Citrus Sinensis ID: 040533
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 364 | 2.2.26 [Sep-21-2011] | |||||||
| Q54MZ3 | 499 | Anaphase-promoting comple | yes | no | 0.873 | 0.637 | 0.465 | 2e-89 | |
| Q12834 | 499 | Cell division cycle prote | yes | no | 0.821 | 0.599 | 0.475 | 7e-83 | |
| Q5H7C0 | 499 | Cell division cycle prote | yes | no | 0.821 | 0.599 | 0.472 | 2e-82 | |
| Q62623 | 499 | Cell division cycle prote | yes | no | 0.821 | 0.599 | 0.472 | 2e-82 | |
| Q9JJ66 | 499 | Cell division cycle prote | yes | no | 0.821 | 0.599 | 0.472 | 3e-82 | |
| Q8LPL5 | 481 | Protein FIZZY-RELATED 3 O | no | no | 0.873 | 0.661 | 0.415 | 3e-73 | |
| Q54KM3 | 754 | Anaphase-promoting comple | no | no | 0.920 | 0.444 | 0.406 | 1e-72 | |
| O13286 | 556 | WD repeat-containing prot | yes | no | 0.810 | 0.530 | 0.441 | 2e-72 | |
| Q9UM11 | 496 | Fizzy-related protein hom | no | no | 0.865 | 0.635 | 0.412 | 2e-71 | |
| Q9R1K5 | 493 | Fizzy-related protein hom | no | no | 0.865 | 0.638 | 0.412 | 2e-71 |
| >sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 329 bits (844), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 155/333 (46%), Positives = 220/333 (66%), Gaps = 15/333 (4%)
Query: 16 YSPRRLLGSPTDFDFQKE--------ARILDAPNLRNDYYSNMMDWGRNNILAIALGLEL 67
YS ++ +PTD +K+ RILDAP++ +DYY N++DW N++AI LG +
Sbjct: 144 YSQNQVGSTPTDQSLKKQFRQIPQQPERILDAPDIVDDYYLNLLDWSSQNVIAIPLGQTV 203
Query: 68 YLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127
YLW E+Q+L +V +DD+ TS+ W++D LAVG + +QLWD +K +R L G
Sbjct: 204 YLWNATTSEIQRLFQVEQQDDYITSLQWTKDGNYLAVGTNSCTIQLWDVAHTKKVRELRG 263
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187
H RV +WN + IL+SGS D +I NHDVRV N+ S ++ H+ EVCGLKWS++G
Sbjct: 264 HAGRVGALAWNDY---ILSSGSSDTNIFNHDVRVQNHHVSTLSGHSQEVCGLKWSHDGGQ 320
Query: 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247
LASGG+DN++++WD + + H F H AAV+ALAWCP+Q N+LA+GGG D I+
Sbjct: 321 LASGGNDNIINIWDINSENFETPAHTFEQHTAAVRALAWCPFQPNLLATGGGAADRTIRF 380
Query: 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307
WN G C+++VDT +Q+C ++W+ ++E++S HG+S + +LC+WKYP M K EL
Sbjct: 381 WNTITGVCLNTVDTMSQVCSIQWSTTYRELVSSHGYSQN----QLCVWKYPSMVKCAELT 436
Query: 308 HQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340
TSR L + SPDG TVVSA+ADETLRFW F
Sbjct: 437 GHTSRALHTAISPDGETVVSASADETLRFWRVF 469
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q12834|CDC20_HUMAN Cell division cycle protein 20 homolog OS=Homo sapiens GN=CDC20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 210/307 (68%), Gaps = 8/307 (2%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N+LA+AL +YLW +G++ +LL++ ++ +S++
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 233
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG ++++QLWD + K +RN+ H RV + S WN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGSRSGHI 290
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS-KCLHR 213
+HDVRV+ + + ++ H+ EVCGL+W+ +G LASGG+DNLV+VW + L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 350
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
F H+ AVKA+AWCP+Q NVLA+GGGT D I+IWNV G C+ +VD +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 410
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333
+KE++SGHGF+ + +L +WKYP M K EL+ TSR+L L+ SPDG TV SAAADET
Sbjct: 411 YKELISGHGFAQN----QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 466
Query: 334 LRFWEAF 340
LR W F
Sbjct: 467 LRLWRCF 473
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Homo sapiens (taxid: 9606) |
| >sp|Q5H7C0|CDC20_PIG Cell division cycle protein 20 homolog OS=Sus scrofa GN=CDC20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 209/307 (68%), Gaps = 8/307 (2%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N+LA+AL +YLW +G++ +LL++ D+ +S++
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVA 233
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG ++++QLWD + K +RN+ H RV + WN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLC---WNSYILSSGSRSGHI 290
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS-KCLHR 213
+HDVRV+ + + ++ H+ EVCGL+W+ +G LASGG+DNLV+VW + L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 350
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
F H+ AVKA+AWCP+Q NVLA+GGGT D I+IWNV G C+ +VD +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 410
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333
+KE++SGHGF+ + +L +WKYP M K EL+ T+R+L L+ SPDG TV SAAADET
Sbjct: 411 YKELISGHGFAQN----QLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADET 466
Query: 334 LRFWEAF 340
LR W F
Sbjct: 467 LRLWRCF 473
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Sus scrofa (taxid: 9823) |
| >sp|Q62623|CDC20_RAT Cell division cycle protein 20 homolog OS=Rattus norvegicus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 210/307 (68%), Gaps = 8/307 (2%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N+LA+AL +YLW +G++ +LL++ D+ +S++
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVA 233
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG +++QLWD + K +RN+ H RV++ S WN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLS---WNSYILSSGSRSGHI 290
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS-KCLHR 213
+HDVRV+ + + ++ H+ EVCGL+W+ +G LASGG+DN+V+VW S L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVPLQT 350
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
F H+ AVKA+AWCP+Q N+LA+GGGT D I+IWNV G C+ +VD +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPH 410
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333
+KE++SGHGF+ + +L +WKYP M K EL+ T+R+L L+ SPDG TV SAAADET
Sbjct: 411 YKELISGHGFAQN----QLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADET 466
Query: 334 LRFWEAF 340
LR W F
Sbjct: 467 LRLWRCF 473
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation (By similarity). Interacts with NEK2. Rattus norvegicus (taxid: 10116) |
| >sp|Q9JJ66|CDC20_MOUSE Cell division cycle protein 20 homolog OS=Mus musculus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 210/307 (68%), Gaps = 8/307 (2%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N+LA+AL +YLW +G++ +LL++ D+ +S++
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVA 233
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG +++QLWD + K +RN+ H RV++ S WN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLS---WNSYILSSGSRSGHI 290
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS-KCLHR 213
+HDVRV+ + + ++ H+ EVCGL+W+ +G LASGG+DN+V+VW S L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWAPLQT 350
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
F H+ AVKA+AWCP+Q N+LA+GGGT D I+IWNV G C+ +VD +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPH 410
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333
+KE++SGHGF+ + +L +WKYP M K EL+ T+R+L L+ SPDG TV SAAADET
Sbjct: 411 YKELISGHGFAQN----QLVIWKYPTMAKVAELKGHTARVLGLTMSPDGATVASAAADET 466
Query: 334 LRFWEAF 340
LR W F
Sbjct: 467 LRLWRCF 473
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Mus musculus (taxid: 10090) |
| >sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana GN=FZR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 210/330 (63%), Gaps = 12/330 (3%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
++LDAP+L++D+Y N++DW N+LA+ LG +YLW N +V KL + G +D S+
Sbjct: 164 KVLDAPSLQDDFYLNVVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDL-GPNDSVCSVQ 222
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W+++ +++G ++Q+WD K +R + GH R +WN IL+SGS+D++I
Sbjct: 223 WTREGSYISIGTSHGQVQVWDGTQCKRVRTMGGHQTRTGVLAWN---SRILSSGSRDRNI 279
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF 214
+ HD+RV ++ S++ H +EVCGLKWS++ LASGG+DN + VW++ S + + +
Sbjct: 280 LQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNH---SQQPILKL 336
Query: 215 RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH 274
+H AAVKA+ W P+Q ++LASGGGT D CI+ WN G ++S+DT +Q+C L W+++
Sbjct: 337 TEHTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKNV 396
Query: 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETL 334
EI+S HG+S + ++ LWKYP M+K L + R+L L+ SPDG T+V+ A DETL
Sbjct: 397 NEIVSTHGYSQN----QIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETL 452
Query: 335 RFWEAFGPSGSGDFVSHLDGLLSLKVSPIR 364
RFW F PS GL SL + IR
Sbjct: 453 RFWNVF-PSVKMQTPVKDTGLWSLGRTQIR 481
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Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q54KM3|CDH1_DICDI Anaphase-promoting complex subunit cdh1 OS=Dictyostelium discoideum GN=cdh1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/379 (40%), Positives = 219/379 (57%), Gaps = 44/379 (11%)
Query: 17 SPRRLLGSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGE 76
SPR+ P + +ILDAP +++D+Y N++DW +NILA+ L +YLW +
Sbjct: 389 SPRK----PQRKISKTPIKILDAPMIKDDFYLNLIDWSSHNILAVGLDTSVYLWNATTSQ 444
Query: 77 VQKLLKVTGEDDFP-TSISWSQDAKT-LAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT 134
V KL ++ E P +S+ W Q LA+G + +WD K IR L+GH+ RV
Sbjct: 445 VSKLCEM--ESGQPVSSVGWIQRGGIHLAIGGTDGVVSIWDVNKKKKIRELQGHNTRVNA 502
Query: 135 ASWNHWNGHILTSGSQDKSIINHDVR-VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193
+WN+ HIL+SG +DK I++HDVR SNN T+R+ H E+CGLKWS +G LASGG+
Sbjct: 503 LAWNN---HILSSGGKDKVILHHDVRDCSNNYTNRLVGHRHEICGLKWSPDGQQLASGGN 559
Query: 194 DNLVHVWDHS----------------------------KMSSSKCLHRFRDHRAAVKALA 225
DNL++VWDHS + ++SK L++F+ H AAVKA+A
Sbjct: 560 DNLLNVWDHSMTQQPQQQHQPPPPPPSSNTSSISQQQQQQNTSKPLYQFKFHYAAVKAIA 619
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285
W P+Q +LASGGGT D CI+ WN G I S+DT +Q+C L W+++ E++S HG+S
Sbjct: 620 WSPHQRGLLASGGGTHDKCIRFWNTTTGQSIQSIDTGSQVCNLAWSKNINELVSTHGYSQ 679
Query: 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345
+ ++ +W YP MT L T R+L L+ SPDG TV + A D +LRFW F +
Sbjct: 680 N----QITVWNYPTMTPVTTLTGHTMRVLYLAVSPDGQTVCTGAGDNSLRFWNLFPSNKE 735
Query: 346 GDFVSHLDGLLSLKVSPIR 364
F S+LD + K IR
Sbjct: 736 SSFSSNLDSFYNKKGLDIR 754
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|O13286|SRW1_SCHPO WD repeat-containing protein srw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srw1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 193/306 (63%), Gaps = 11/306 (3%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
R+LDAP L D+Y N++DWG+ N+LA+AL +YLW + EV + D TS+
Sbjct: 240 RVLDAPGLAGDFYLNLLDWGQCNMLAVALASRVYLWSGISSEVTVMHNFYPTDTV-TSLR 298
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W Q LAVG +++WDA T K R + GH +RV SWN H+L+SG +D I
Sbjct: 299 WVQRGTHLAVGTHNGSVEIWDAATCKKTRTMSGHTERVGALSWN---DHVLSSGGRDNHI 355
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF 214
++ DVR + + AH EVCGL+W++ NLLASGG+DN + VWD + K L+ F
Sbjct: 356 LHRDVRAPEHYFRVLTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFE---EKPLYSF 412
Query: 215 RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH 274
+H AAVKA+ W P+Q +LASGGGT D IK+WN Q+G+ +H++DT +Q+C L W++
Sbjct: 413 HNHIAAVKAITWSPHQRGILASGGGTADRTIKLWNTQRGSMLHNIDTGSQVCNLLWSKQT 472
Query: 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETL 334
E +S HGF + ++ LW YP +++ G L+ T R+L L+ SP+G +V+ AADETL
Sbjct: 473 NEFISTHGFMEN----EVALWNYPSVSRVGTLKGHTDRVLYLAMSPNGENIVTGAADETL 528
Query: 335 RFWEAF 340
RFW+ F
Sbjct: 529 RFWKLF 534
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Has a role in cell differentiation and cell cycling by negatively regulating cig2 and cdc12-associated cdc2. Down-regulates the level of cdc13, particularly in a nitrogen deprived environment. Regulator of cell cycle G1 phase progression. Prevents onset of mitosis during the pre-Start G1 period. Required for degradation of cdc13 mitotic cyclin B during G1 arrest but not during mitotic exit. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9UM11|FZR_HUMAN Fizzy-related protein homolog OS=Homo sapiens GN=FZR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 201/330 (60%), Gaps = 15/330 (4%)
Query: 17 SPRRLLGSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGE 76
SPR+ PT + ++LDAP L++D+Y N++DW N+L++ LG +YLW +
Sbjct: 163 SPRK----PTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQ 218
Query: 77 VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136
V +L ++ E D TS+ WS+ +AVG +Q+WDA K + LEGH RV +
Sbjct: 219 VTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALA 278
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195
WN L+SGS+D+ I+ D+R R+ H EVCGLKWS + LLASGG+DN
Sbjct: 279 ---WNAEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLASGGNDN 335
Query: 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255
+ VW+HS +S + ++ +H AAVKA+AW P+Q +LASGGGT D CI+ WN G
Sbjct: 336 KLLVWNHSSLSP---VQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQP 392
Query: 256 IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILE 315
+ +DT +Q+C L W++H E++S HG+S + ++ +WKYP +T+ +L + R+L
Sbjct: 393 LQCIDTGSQVCNLAWSKHANELVSTHGYSQN----QILVWKYPSLTQVAKLTGHSYRVLY 448
Query: 316 LSQSPDGLTVVSAAADETLRFWEAFGPSGS 345
L+ SPDG +V+ A DETLRFW F + S
Sbjct: 449 LAMSPDGEAIVTGAGDETLRFWNVFSKTRS 478
|
Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis. Homo sapiens (taxid: 9606) |
| >sp|Q9R1K5|FZR_MOUSE Fizzy-related protein homolog OS=Mus musculus GN=Fzr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 201/330 (60%), Gaps = 15/330 (4%)
Query: 17 SPRRLLGSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGE 76
SPR+ PT + ++LDAP L++D+Y N++DW N+L++ LG +YLW +
Sbjct: 163 SPRK----PTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQ 218
Query: 77 VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136
V +L ++ E D TS+ WS+ +AVG +Q+WDA K + LEGH RV +
Sbjct: 219 VTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALA 278
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195
WN L+SGS+D+ I+ D+R R+ H EVCGLKWS + LLASGG+DN
Sbjct: 279 ---WNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLASGGNDN 335
Query: 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255
+ VW+HS +S + ++ +H AAVKA+AW P+Q +LASGGGT D CI+ WN G
Sbjct: 336 KLLVWNHSSLSP---VQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQP 392
Query: 256 IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILE 315
+ +DT +Q+C L W++H E++S HG+S + ++ +WKYP +T+ +L + R+L
Sbjct: 393 LQCIDTGSQVCNLAWSKHANELVSTHGYSQN----QILVWKYPSLTQVAKLTGHSYRVLY 448
Query: 316 LSQSPDGLTVVSAAADETLRFWEAFGPSGS 345
L+ SPDG +V+ A DETLRFW F + S
Sbjct: 449 LAMSPDGEAIVTGAGDETLRFWNVFSKTRS 478
|
Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 364 | ||||||
| 359490104 | 454 | PREDICTED: anaphase-promoting complex su | 0.909 | 0.729 | 0.668 | 1e-129 | |
| 356533257 | 486 | PREDICTED: anaphase-promoting complex su | 0.906 | 0.679 | 0.674 | 1e-128 | |
| 297744965 | 469 | unnamed protein product [Vitis vinifera] | 0.901 | 0.699 | 0.662 | 1e-127 | |
| 255539973 | 459 | cell division cycle, putative [Ricinus c | 0.846 | 0.671 | 0.673 | 1e-124 | |
| 357450999 | 452 | Cell division cycle protein-like protein | 0.909 | 0.732 | 0.632 | 1e-121 | |
| 147799089 | 455 | hypothetical protein VITISV_011377 [Viti | 0.903 | 0.723 | 0.636 | 1e-116 | |
| 356502408 | 308 | PREDICTED: LOW QUALITY PROTEIN: cell div | 0.824 | 0.974 | 0.576 | 3e-99 | |
| 303279881 | 358 | predicted protein [Micromonas pusilla CC | 0.837 | 0.851 | 0.535 | 3e-95 | |
| 302773299 | 419 | hypothetical protein SELMODRAFT_92939 [S | 0.892 | 0.775 | 0.505 | 2e-94 | |
| 302767642 | 475 | hypothetical protein SELMODRAFT_86492 [S | 0.835 | 0.64 | 0.522 | 4e-93 |
| >gi|359490104|ref|XP_002277711.2| PREDICTED: anaphase-promoting complex subunit cdc20-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/335 (66%), Positives = 270/335 (80%), Gaps = 4/335 (1%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
+KE+R+LDAP + +DYY N+MDWG+ NILAIALG +LYLW E G QKL++V ++D+P
Sbjct: 123 KKESRVLDAPRINDDYYLNIMDWGKRNILAIALGSDLYLWNAETGHSQKLMQVDDQEDYP 182
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
TSI+W +D + +AVG+++SKLQLWDAET KLIR+LEGHD RV A+WN G ILTSGS+
Sbjct: 183 TSIAWCEDGRRVAVGHLSSKLQLWDAETFKLIRSLEGHDDRVGIAAWN---GQILTSGSR 239
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DKSIINHDVR N++T R+ H+ EVCGLKWS GN LASGG++NL+++W+ SKM SS
Sbjct: 240 DKSIINHDVRARNSLTCRVQIHSQEVCGLKWSITGNKLASGGNENLIYIWEASKMCSSNF 299
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270
LHRF H+AAVKALAWCPYQ +VLASGGGT DGCIKIWN+QKGTCI+S+ AQICGLEW
Sbjct: 300 LHRFSGHQAAVKALAWCPYQSDVLASGGGTLDGCIKIWNIQKGTCINSIRANAQICGLEW 359
Query: 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA 330
NRHHKEILSGHGFS++G +LCLWKYP M+K GEL+ +SR+L LSQSPDG TVVSA A
Sbjct: 360 NRHHKEILSGHGFSATGHQNELCLWKYPSMSKLGELKCHSSRVLHLSQSPDGSTVVSAGA 419
Query: 331 DETLRFWEAFGPSGS-GDFVSHLDGLLSLKVSPIR 364
DETLRFWE FGP + VS LD LLS K S IR
Sbjct: 420 DETLRFWEVFGPPVTDSSRVSDLDSLLSFKRSLIR 454
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533257|ref|XP_003535182.1| PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/335 (67%), Positives = 266/335 (79%), Gaps = 5/335 (1%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
+KE+RILDAPN+RND+YSN+MDWG NNILAIAL ++YLW EN V KL K T +DFP
Sbjct: 156 KKESRILDAPNIRNDFYSNIMDWGNNNILAIALDSDMYLWNSENKNVFKLFKATN-NDFP 214
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
TS+SWS+D K LA+G+M SKLQLWDAETSK IR L+GH R+AT +WN G ILTSGS
Sbjct: 215 TSVSWSEDTKYLAIGFMNSKLQLWDAETSKPIRILQGHGHRIATIAWN---GQILTSGSH 271
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DK IINHDVR NNV S++ AH AEVCGLKW+ N+LASGG++N ++VWD KMSSS
Sbjct: 272 DKYIINHDVRARNNVISQVKAHKAEVCGLKWTRRSNMLASGGNENHIYVWDLVKMSSSNF 331
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270
LH F+DH AAVKALAWCPY +VLASGGGT+D CIK+WNV+KG+ I S+DTKAQ+CGLEW
Sbjct: 332 LHCFKDHCAAVKALAWCPYDSSVLASGGGTEDSCIKLWNVKKGSSICSIDTKAQVCGLEW 391
Query: 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA 330
NRHHKE+LSGHGFS+S +LC+WKYP MTK G L SR+L L QSPDGLTVVSA A
Sbjct: 392 NRHHKELLSGHGFSTSAHHNQLCMWKYPSMTKVGGLDRHASRVLHLCQSPDGLTVVSAGA 451
Query: 331 DETLRFWEAFGPS-GSGDFVSHLDGLLSLKVSPIR 364
DE+LRFW+ FGP + +S LD LLSLKVSPIR
Sbjct: 452 DESLRFWDVFGPPVNNTSEISDLDNLLSLKVSPIR 486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744965|emb|CBI38557.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/332 (66%), Positives = 267/332 (80%), Gaps = 4/332 (1%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
+KE+R+LDAP + +DYY N+MDWG+ NILAIALG +LYLW E G QKL++V ++D+P
Sbjct: 124 KKESRVLDAPRINDDYYLNIMDWGKRNILAIALGSDLYLWNAETGHSQKLMQVDDQEDYP 183
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
TSI+W +D + +AVG+++SKLQLWDAET KLIR+LEGHD RV A+WN G ILTSGS+
Sbjct: 184 TSIAWCEDGRRVAVGHLSSKLQLWDAETFKLIRSLEGHDDRVGIAAWN---GQILTSGSR 240
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DKSIINHDVR N++T R+ H+ EVCGLKWS GN LASGG++NL+++W+ SKM SS
Sbjct: 241 DKSIINHDVRARNSLTCRVQIHSQEVCGLKWSITGNKLASGGNENLIYIWEASKMCSSNF 300
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270
LHRF H+AAVKALAWCPYQ +VLASGGGT DGCIKIWN+QKGTCI+S+ AQICGLEW
Sbjct: 301 LHRFSGHQAAVKALAWCPYQSDVLASGGGTLDGCIKIWNIQKGTCINSIRANAQICGLEW 360
Query: 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA 330
NRHHKEILSGHGFS++G +LCLWKYP M+K GEL+ +SR+L LSQSPDG TVVSA A
Sbjct: 361 NRHHKEILSGHGFSATGHQNELCLWKYPSMSKLGELKCHSSRVLHLSQSPDGSTVVSAGA 420
Query: 331 DETLRFWEAFGPSGS-GDFVSHLDGLLSLKVS 361
DETLRFWE FGP + VS LD LL +S
Sbjct: 421 DETLRFWEVFGPPVTDSSRVSDLDSLLMFPIS 452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539973|ref|XP_002511051.1| cell division cycle, putative [Ricinus communis] gi|223550166|gb|EEF51653.1| cell division cycle, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/312 (67%), Positives = 257/312 (82%), Gaps = 4/312 (1%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
++E R+LDAPN+ +DYY N++DWG+NN++A+ALG +YLW EN KLL+V + D+P
Sbjct: 129 KRETRVLDAPNIIDDYYVNIIDWGKNNVIAVALGQAIYLWNAENKSTLKLLEVESDSDYP 188
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
TSISWS+D ++LAVGYM SKLQLWD E + +R ++GH RVAT +WN GH LTSGS+
Sbjct: 189 TSISWSEDNRSLAVGYMQSKLQLWDTEALRCVRQMDGHKNRVATLAWN---GHTLTSGSR 245
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DK+I+N DVRV N+ TSRI AHT EVCGLKWS EGNLLASGG++NL+H+W+ SKMSSS
Sbjct: 246 DKTILNRDVRVRNS-TSRILAHTEEVCGLKWSTEGNLLASGGNENLIHIWEASKMSSSNF 304
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270
LH+F+ HR+AVKALAWCPYQFNVLASGGGT+DGCIKIWNV+KG+CIHS+ T +QIC LEW
Sbjct: 305 LHQFKGHRSAVKALAWCPYQFNVLASGGGTKDGCIKIWNVRKGSCIHSIHTNSQICALEW 364
Query: 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA 330
NRHHKEILSGHG+S LCLWKYP +TK GE+Q ++RIL LSQSPDGLTVVSA A
Sbjct: 365 NRHHKEILSGHGYSLGPLQNHLCLWKYPSLTKVGEIQRHSNRILGLSQSPDGLTVVSAGA 424
Query: 331 DETLRFWEAFGP 342
D+TLRFW+ FGP
Sbjct: 425 DQTLRFWDIFGP 436
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450999|ref|XP_003595776.1| Cell division cycle protein-like protein [Medicago truncatula] gi|355484824|gb|AES66027.1| Cell division cycle protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/335 (63%), Positives = 265/335 (79%), Gaps = 4/335 (1%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
+KE+R+LDAP ++NDYY+N++DWG+N+ILA+ALG E+Y W +V +L KV G +++P
Sbjct: 121 KKESRVLDAPKIKNDYYTNLVDWGKNSILAVALGPEIYFWNSVTTDVSRLFKVNG-NNYP 179
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
TS+SWS+DAK +A G++ S+LQ+WDAETSKL+RNLEGH +R+AT +WN N ILTSG
Sbjct: 180 TSVSWSEDAKYVATGFVHSQLQIWDAETSKLVRNLEGHAQRIATLAWN--NNRILTSGGH 237
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DKSIINHDVR N RI H AE+CGLKWS GNLLASGG++N V+VWD +KM+SS
Sbjct: 238 DKSIINHDVRARRNEVLRIKTHRAEICGLKWSKRGNLLASGGNENHVYVWDSNKMNSSNF 297
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270
LH F++H AAVKAL WCPY +VLASGGGT D CIK+WNVQ+GT I S+DTKAQ+CGL+W
Sbjct: 298 LHCFKEHTAAVKALDWCPYDSDVLASGGGTDDRCIKLWNVQRGTNICSIDTKAQVCGLQW 357
Query: 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA 330
NRH+KEILSGHGFS+S + +LCLW+YP MTK G L TSR+L LSQSPDGLTVVSA
Sbjct: 358 NRHYKEILSGHGFSTSPEHNQLCLWQYPSMTKVGGLDPHTSRVLHLSQSPDGLTVVSAGG 417
Query: 331 DETLRFWEAFGPSGSGDFVSHLDG-LLSLKVSPIR 364
DETLRFW+ FGP+ + S + G LLS+K S IR
Sbjct: 418 DETLRFWDIFGPAVNDTRESSVLGNLLSMKASQIR 452
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799089|emb|CAN72563.1| hypothetical protein VITISV_011377 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/338 (63%), Positives = 262/338 (77%), Gaps = 9/338 (2%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
+KE+R+LDAP + +DYY N+MDWG+ NILAIALG +LYLW E G QKL++V ++D+P
Sbjct: 123 KKESRVLDAPRINDDYYLNIMDWGKRNILAIALGSDLYLWNAETGHSQKLMQVDDQEDYP 182
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
TSI+W +D + +AVG+++SKLQLWDAET KLIR+LEGHD RV A+WN G ILTSGS+
Sbjct: 183 TSIAWCEDGRRVAVGHLSSKLQLWDAETFKLIRSLEGHDDRVGIAAWN---GQILTSGSR 239
Query: 151 DKSIINHDVRVSNNVTSRI--NAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSS 207
DKSIINHD ++ +TS+I N C + G N LASGG++NL+++W+ SKM S
Sbjct: 240 DKSIINHDG--TSILTSQIQNNGDNNSKCSCINVHIGRNKLASGGNENLIYIWEASKMCS 297
Query: 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICG 267
S LHRF H+AAVKALAWCPYQ +VLASGGGT DGCIKIWN+QKGTCI+S+ AQICG
Sbjct: 298 SNFLHRFSGHQAAVKALAWCPYQSDVLASGGGTLDGCIKIWNIQKGTCINSIRANAQICG 357
Query: 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327
LEWNRHHKEILSGHGFS++G +LCLWKYP M+K GEL+ +SR+L LSQSPDG TVVS
Sbjct: 358 LEWNRHHKEILSGHGFSATGHQNELCLWKYPSMSKLGELKCHSSRVLHLSQSPDGSTVVS 417
Query: 328 AAADETLRFWEAFGPSGS-GDFVSHLDGLLSLKVSPIR 364
A ADETLRFWE FGP + VS LD LLS K S IR
Sbjct: 418 AGADETLRFWEVFGPPVTDSSRVSDLDSLLSFKRSLIR 455
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502408|ref|XP_003520011.1| PREDICTED: LOW QUALITY PROTEIN: cell division cycle protein 20 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 193/335 (57%), Positives = 231/335 (68%), Gaps = 35/335 (10%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
QKE+RILDA N+RND+YSN+MDWG NNILA+ L LW EN V KL K T + FP
Sbjct: 8 QKESRILDAQNIRNDFYSNIMDWGENNILAVCLTHTCTLWNSENSNVFKLFKAT-NNKFP 66
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
TS+SWS+D LA+GYM S+LQLWDAETSK IR L+
Sbjct: 67 TSVSWSEDTNYLAIGYMNSELQLWDAETSKPIRILQ------------------------ 102
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
VR +NNV S + AH AEVCGLKW+ GN+LASGG++N V+VWD +K SSS
Sbjct: 103 --------VRATNNVISWVKAHKAEVCGLKWT-RGNILASGGNENHVYVWDLAKRSSSNF 153
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270
LH F+DH AAVKAL+WCPY +VLASGGGT+D IK+WNV+KGT I S+D KA +CGLEW
Sbjct: 154 LHCFKDHCAAVKALSWCPYDSSVLASGGGTEDRSIKLWNVKKGTIICSIDPKALVCGLEW 213
Query: 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA 330
NRHHKE+LSGHGFS+S +LC+W +P MTK G L SR+L L QSPDGLTVVS A
Sbjct: 214 NRHHKELLSGHGFSTSAHHNQLCMWTHPSMTKVGGLDCHASRVLHLCQSPDGLTVVSVGA 273
Query: 331 DETLRFWEAFGPS-GSGDFVSHLDGLLSLKVSPIR 364
D+TLRF + FGP + +S+LD LLSL VSPIR
Sbjct: 274 DKTLRFSDVFGPPVNNTSEISNLDNLLSLXVSPIR 308
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|303279881|ref|XP_003059233.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459069|gb|EEH56365.1| predicted protein [Micromonas pusilla CCMP1545] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 225/314 (71%), Gaps = 9/314 (2%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVT--GEDDFPTS 92
RILDAP L +DYY N++DWG +N +A+ALG +YLW E G++Q+L + EDD+ TS
Sbjct: 32 RILDAPELIDDYYLNLIDWGASNQVAVALGCTVYLWNAETGDIQQLCQTNQDNEDDYVTS 91
Query: 93 ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152
+SW D K +AVG +++Q+WDA K +R L GH RV +WN G L +GS+D
Sbjct: 92 VSWGGDGKHVAVGTNGAEVQIWDASRLKQVRTLRGHSARVGALAWN---GTQLATGSRDN 148
Query: 153 SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212
+I+ HDVRV + T+ + +HT EVCGLKW+ GN LASGG+DNL+H++D + +S+S LH
Sbjct: 149 NIMMHDVRVREHCTATLTSHTQEVCGLKWAPSGNQLASGGNDNLLHIYDANSISNSTHLH 208
Query: 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR 272
R H+AAVKALAWCP+Q N+LASGGGT D CIK WN G ++S+DT +Q+C L+WN+
Sbjct: 209 RLDAHQAAVKALAWCPFQSNLLASGGGTADRCIKFWNTNTGAMLNSIDTHSQVCALQWNK 268
Query: 273 HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332
H +E+LS HG+S + +LCLWKYP MTK EL T+R+L ++QSPDG +VVSAAADE
Sbjct: 269 HERELLSSHGYSQN----QLCLWKYPTMTKMAELTGHTARVLHMAQSPDGTSVVSAAADE 324
Query: 333 TLRFWEAFGPSGSG 346
TLRFW+ F S SG
Sbjct: 325 TLRFWKCFSESDSG 338
|
Source: Micromonas pusilla CCMP1545 Species: Micromonas pusilla Genus: Micromonas Family: Order: Mamiellales Class: Mamiellophyceae Phylum: Chlorophyta Superkingdom: Eukaryota |
| >gi|302773299|ref|XP_002970067.1| hypothetical protein SELMODRAFT_92939 [Selaginella moellendorffii] gi|302807054|ref|XP_002985258.1| hypothetical protein SELMODRAFT_121776 [Selaginella moellendorffii] gi|300147086|gb|EFJ13752.1| hypothetical protein SELMODRAFT_121776 [Selaginella moellendorffii] gi|300162578|gb|EFJ29191.1| hypothetical protein SELMODRAFT_92939 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 174/344 (50%), Positives = 233/344 (67%), Gaps = 19/344 (5%)
Query: 6 RLSRLLETDWYSP-----RRLLGSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILA 60
R SRLL ++ +P RR+ Q R LDAP + +DYY N++DWG NNILA
Sbjct: 62 RESRLLYSENTAPGASKPRRMFRQIP----QAPERTLDAPEILDDYYLNLLDWGTNNILA 117
Query: 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120
+ALG +YLW G +++L++V+ +D TS+SW+ D K ++VG + +QLWDA + +
Sbjct: 118 VALGHTVYLWNATTGGIEELMQVSEDDGPVTSVSWAPDGKHISVGLNNADVQLWDAFSLR 177
Query: 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180
+R+L+ H RV + +WN G IL++G +D I NHDVR+ +VT ++ AH EVCGLK
Sbjct: 178 QVRSLKAHTARVGSLAWN---GPILSTGGRDNVIFNHDVRIREHVTGKMAAHQQEVCGLK 234
Query: 181 WSNEGNLLASGGDDNLVHVWDHSKMSS---SKCLHRFRDHRAAVKALAWCPYQFNVLASG 237
WS G LASGG+DNL++VWD + +S S LHR +H+AAVKALAWCP+Q N+LASG
Sbjct: 235 WSPSGQQLASGGNDNLLYVWDAAAAASRGNSTYLHRLDEHQAAVKALAWCPFQSNLLASG 294
Query: 238 GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297
GGT D CIK WN G CI SVDT +Q+C L+W++H +E+LS HGFS + +L LWKY
Sbjct: 295 GGTADRCIKFWNTHTGACIQSVDTASQVCALQWSKHERELLSSHGFSQN----QLILWKY 350
Query: 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341
P M K EL TSR+L ++QSPDG TV SAA DETLRFW+ FG
Sbjct: 351 PSMVKMAELTGHTSRVLHMAQSPDGYTVASAAGDETLRFWQVFG 394
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302767642|ref|XP_002967241.1| hypothetical protein SELMODRAFT_86492 [Selaginella moellendorffii] gi|300165232|gb|EFJ31840.1| hypothetical protein SELMODRAFT_86492 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 164/314 (52%), Positives = 218/314 (69%), Gaps = 10/314 (3%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
Q R LDAP + +DYY N++DWG NN++A+ALG +YLW G +++L++ ED
Sbjct: 143 QAPERTLDAPEILDDYYLNLLDWGSNNVVAVALGHTVYLWNASTGNIEELMQANEEDGPV 202
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
TS++W+ D K ++VG + +QLWD+ + + +R+L+ H RV + +WN G IL++G +
Sbjct: 203 TSVAWAPDGKHISVGLSNADVQLWDSLSLRQVRSLKAHSARVGSLAWN---GPILSTGGR 259
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS--- 207
D I NHDVR+ +VT ++ AH EVCGLKWS G LASGG+DNL+HVWD + S
Sbjct: 260 DNVIFNHDVRIREHVTGKMVAHQQEVCGLKWSPSGQQLASGGNDNLLHVWDAAAAVSGGT 319
Query: 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICG 267
S LHR +H+AAVKALAWCP+Q N+LASGGGT D CIK WN G CI SVDT +Q+C
Sbjct: 320 SSYLHRLDEHQAAVKALAWCPFQSNLLASGGGTADRCIKFWNTHTGACIQSVDTGSQVCA 379
Query: 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327
L+W++H +E+LS HGFS + +L LWKYP M K EL TSR+L L+QSPDG TV S
Sbjct: 380 LQWSKHERELLSSHGFSQN----QLILWKYPSMVKMAELTGHTSRVLHLAQSPDGYTVAS 435
Query: 328 AAADETLRFWEAFG 341
AA DETLRFW+ FG
Sbjct: 436 AAGDETLRFWQVFG 449
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 364 | ||||||
| TAIR|locus:2143636 | 411 | CDC20.5 "AT5G27570" [Arabidops | 0.835 | 0.739 | 0.496 | 1.3e-86 | |
| DICTYBASE|DDB_G0285601 | 499 | cdc20 "cdc20/fizzy domain-cont | 0.873 | 0.637 | 0.465 | 1.3e-84 | |
| TAIR|locus:2144372 | 466 | CDC20.3 "AT5G27080" [Arabidops | 0.832 | 0.650 | 0.498 | 4.4e-84 | |
| TAIR|locus:2148518 | 444 | CDC20.4 "AT5G26900" [Arabidops | 0.832 | 0.682 | 0.496 | 1.2e-83 | |
| TAIR|locus:2119141 | 447 | CDC20.2 "AT4G33260" [Arabidops | 0.835 | 0.680 | 0.495 | 1.5e-83 | |
| TAIR|locus:2119151 | 457 | CDC20.1 "AT4G33270" [Arabidops | 0.835 | 0.665 | 0.495 | 1.5e-83 | |
| FB|FBgn0001086 | 526 | fzy "fizzy" [Drosophila melano | 0.824 | 0.570 | 0.485 | 8.2e-83 | |
| UNIPROTKB|Q5ZI36 | 507 | CDC20 "Uncharacterized protein | 0.821 | 0.589 | 0.487 | 8.5e-81 | |
| UNIPROTKB|Q12834 | 499 | CDC20 "Cell division cycle pro | 0.821 | 0.599 | 0.475 | 2.9e-80 | |
| UNIPROTKB|Q5H7C0 | 499 | CDC20 "Cell division cycle pro | 0.821 | 0.599 | 0.472 | 6e-80 |
| TAIR|locus:2143636 CDC20.5 "AT5G27570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 157/316 (49%), Positives = 217/316 (68%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
Q R+LDAP + +D+Y N++DWG +N+LAIALG +YLW +G KL+ + E+
Sbjct: 78 QNSERVLDAPGIADDFYLNLLDWGSSNVLAIALGDTVYLWDASSGSTYKLVTIDEEEGPV 137
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGS 149
TSI+W+QD LA+G S++QLWD +++ +R L G H+ RV + +WN+ HILT+G
Sbjct: 138 TSINWTQDGLDLAIGLDNSEVQLWDCVSNRQVRTLRGGHESRVGSLAWNN---HILTTGG 194
Query: 150 QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS- 208
D I+N+DVR+ +++ HT EVCGLKWS G LASGG+DN+VH+WDH ++SS
Sbjct: 195 MDGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWDHRSVASSN 254
Query: 209 ---KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI 265
+ LHRF +H AAV+ALAWCP+Q ++LA+GGG DG IK WN G C++SV+T +Q+
Sbjct: 255 PTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVETGSQV 314
Query: 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTV 325
C L W++ +E+LS HGF+ + +L LWKYP M K EL TSR+L ++QSPDG TV
Sbjct: 315 CSLLWSKSERELLSSHGFTQN----QLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTV 370
Query: 326 VSAAADETLRFWEAFG 341
SAA DETLR W FG
Sbjct: 371 ASAAGDETLRLWNVFG 386
|
|
| DICTYBASE|DDB_G0285601 cdc20 "cdc20/fizzy domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 155/333 (46%), Positives = 220/333 (66%)
Query: 16 YSPRRLLGSPTDFDFQKE--------ARILDAPNLRNDYYSNMMDWGRNNILAIALGLEL 67
YS ++ +PTD +K+ RILDAP++ +DYY N++DW N++AI LG +
Sbjct: 144 YSQNQVGSTPTDQSLKKQFRQIPQQPERILDAPDIVDDYYLNLLDWSSQNVIAIPLGQTV 203
Query: 68 YLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127
YLW E+Q+L +V +DD+ TS+ W++D LAVG + +QLWD +K +R L G
Sbjct: 204 YLWNATTSEIQRLFQVEQQDDYITSLQWTKDGNYLAVGTNSCTIQLWDVAHTKKVRELRG 263
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187
H RV +WN + IL+SGS D +I NHDVRV N+ S ++ H+ EVCGLKWS++G
Sbjct: 264 HAGRVGALAWNDY---ILSSGSSDTNIFNHDVRVQNHHVSTLSGHSQEVCGLKWSHDGGQ 320
Query: 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247
LASGG+DN++++WD + + H F H AAV+ALAWCP+Q N+LA+GGG D I+
Sbjct: 321 LASGGNDNIINIWDINSENFETPAHTFEQHTAAVRALAWCPFQPNLLATGGGAADRTIRF 380
Query: 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307
WN G C+++VDT +Q+C ++W+ ++E++S HG+S + +LC+WKYP M K EL
Sbjct: 381 WNTITGVCLNTVDTMSQVCSIQWSTTYRELVSSHGYSQN----QLCVWKYPSMVKCAELT 436
Query: 308 HQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340
TSR L + SPDG TVVSA+ADETLRFW F
Sbjct: 437 GHTSRALHTAISPDGETVVSASADETLRFWRVF 469
|
|
| TAIR|locus:2144372 CDC20.3 "AT5G27080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 158/317 (49%), Positives = 215/317 (67%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
Q R+LDAP L +D+Y N++DWG N+LAIALG +YLW +G +L+ + ED P
Sbjct: 109 QNSERVLDAPGLMDDFYLNLLDWGSANVLAIALGDTVYLWDASSGSTSELVTID-EDKGP 167
Query: 91 -TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL-EGHDKRVATASWNHWNGHILTSG 148
TSI+W+QD LAVG S++QLWD +++ +R L GH+ RV + +WN+ HILT+G
Sbjct: 168 VTSINWTQDGLDLAVGLDNSEVQLWDFVSNRQVRTLIGGHESRVGSLAWNN---HILTTG 224
Query: 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
D I+N+DVR+ +++ HT EVCGLKWS G LASGG+ N+VH+WDH ++SS
Sbjct: 225 GMDGKIVNNDVRIRSSIVGTYLGHTEEVCGLKWSESGKKLASGGNYNVVHIWDHRSVASS 284
Query: 209 K----CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ 264
K LHRF +H AAV+ALAWCP+Q +LA+GGG DG IK WN G C++SV+T +Q
Sbjct: 285 KPTRQWLHRFEEHTAAVRALAWCPFQATLLATGGGVGDGKIKFWNTHTGACLNSVETGSQ 344
Query: 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT 324
+C L W++ +E+LS HGF+ + +L LWKYP M+K EL TSR+L ++QSP+G T
Sbjct: 345 VCSLLWSQRERELLSSHGFTQN----QLTLWKYPSMSKMAELNGHTSRVLFMAQSPNGCT 400
Query: 325 VVSAAADETLRFWEAFG 341
V SAA DE LR W FG
Sbjct: 401 VASAAGDENLRLWNVFG 417
|
|
| TAIR|locus:2148518 CDC20.4 "AT5G26900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 157/316 (49%), Positives = 215/316 (68%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
Q R+LDAP LR+D+ N++DWG N+LAIALG +YLW +G +L+ + ED P
Sbjct: 112 QNSERVLDAPGLRDDFSLNLLDWGSANVLAIALGDTVYLWDASSGSTSELVTID-EDKGP 170
Query: 91 -TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSG 148
TSI+W+QD LAVG S++QLWD +++ +R L G H+ RV + +W++ HILT+G
Sbjct: 171 VTSINWTQDGLDLAVGLDNSEVQLWDCVSNRQVRTLRGGHESRVGSLAWDN---HILTTG 227
Query: 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
D I+N+DVR+ +++ HT EVCGLKWS GN ASGG+DN+VH+WD S SS
Sbjct: 228 GMDGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSK 287
Query: 209 KC---LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI 265
+ LHRF +H AAV+ALAWCP+Q ++LA+GGG DG IK WN G C++SV+T +Q+
Sbjct: 288 QTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVETGSQV 347
Query: 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTV 325
C L W++ +E+LS HGF+ + +L LWKYP M+K EL TSR+L ++QSP+G TV
Sbjct: 348 CSLLWSQSERELLSSHGFTQN----QLTLWKYPSMSKMAELNGHTSRVLFMAQSPNGCTV 403
Query: 326 VSAAADETLRFWEAFG 341
SAA DE LR W FG
Sbjct: 404 ASAAGDENLRLWNVFG 419
|
|
| TAIR|locus:2119141 CDC20.2 "AT4G33260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 156/315 (49%), Positives = 211/315 (66%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
Q R LDAP++ +D+Y N++DWG N+LAIAL +YLW G +L+ + E
Sbjct: 116 QTSERTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTIDEEKGPV 175
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGS 149
TSI+W+ D + +AVG S++QLWD+ +++ +R L+G H RV + +WN+ HILT+G
Sbjct: 176 TSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNN---HILTTGG 232
Query: 150 QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209
D IIN+DVR+ + + HT EVCGLKWS G LASGG+DN+VH+WD S SS+
Sbjct: 233 MDGLIINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNS 292
Query: 210 C---LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQIC 266
LHR +H +AVKALAWCP+Q N+LA+GGG D IK WN G C++SVDT +Q+C
Sbjct: 293 TTQWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVC 352
Query: 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326
L W+++ +E+LS HGF+ + +L LWKYP M K EL TSR+L ++QSPDG TV
Sbjct: 353 SLLWSKNERELLSSHGFTQN----QLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVA 408
Query: 327 SAAADETLRFWEAFG 341
SAA DETLRFW FG
Sbjct: 409 SAAGDETLRFWNVFG 423
|
|
| TAIR|locus:2119151 CDC20.1 "AT4G33270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 156/315 (49%), Positives = 211/315 (66%)
Query: 31 QKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP 90
Q R LDAP++ +D+Y N++DWG N+LAIAL +YLW G +L+ + E
Sbjct: 126 QTSERTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTIDEEKGPV 185
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGS 149
TSI+W+ D + +AVG S++QLWD+ +++ +R L+G H RV + +WN+ HILT+G
Sbjct: 186 TSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNN---HILTTGG 242
Query: 150 QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209
D IIN+DVR+ + + HT EVCGLKWS G LASGG+DN+VH+WD S SS+
Sbjct: 243 MDGLIINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNS 302
Query: 210 C---LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQIC 266
LHR +H +AVKALAWCP+Q N+LA+GGG D IK WN G C++SVDT +Q+C
Sbjct: 303 TTQWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVC 362
Query: 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326
L W+++ +E+LS HGF+ + +L LWKYP M K EL TSR+L ++QSPDG TV
Sbjct: 363 SLLWSKNERELLSSHGFTQN----QLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVA 418
Query: 327 SAAADETLRFWEAFG 341
SAA DETLRFW FG
Sbjct: 419 SAAGDETLRFWNVFG 433
|
|
| FB|FBgn0001086 fzy "fizzy" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 151/311 (48%), Positives = 217/311 (69%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP+ NDYY N+MDW +NI+A+ALG +YLW + G +++L + E D+ S+S
Sbjct: 200 RILDAPDFINDYYLNLMDWSADNIVAVALGSCVYLWNAQTGNIEQLTEFE-EGDYAGSLS 258
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W Q+ + LA+G ++LWD K +R ++GH RV + +WN + +++SGS+D +I
Sbjct: 259 WIQEGQILAIGNSTGAVELWDCSKVKRLRVMDGHSARVGSLAWNSF---LVSSGSRDGTI 315
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM---SSSKCL 211
++HDVR + S ++ HT EVCGLKWS + LASGG+DNLV+VW + +++ L
Sbjct: 316 VHHDVRAREHKLSTLSGHTQEVCGLKWSTDFKYLASGGNDNLVNVWSAASGGVGTATDPL 375
Query: 212 HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWN 271
H+F DH+AAV+ALAWCP+Q + LASGGGT D CIK WNV GT + SVD+K+Q+C L ++
Sbjct: 376 HKFNDHQAAVRALAWCPWQPSTLASGGGTADRCIKFWNVNNGTLMKSVDSKSQVCSLLFS 435
Query: 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD 331
RH+KE++S HGF+++ +L +WKYP M K +L TSR+L+++ SPDG TV+SA AD
Sbjct: 436 RHYKELISAHGFANN----QLTIWKYPTMVKQADLTGHTSRVLQMAMSPDGSTVISAGAD 491
Query: 332 ETLRFWEAFGP 342
ETLR W F P
Sbjct: 492 ETLRLWNCFAP 502
|
|
| UNIPROTKB|Q5ZI36 CDC20 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 150/308 (48%), Positives = 208/308 (67%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N LA+AL +YLW GE+ +LL++ DD+ +S+S
Sbjct: 181 RILDAPEIRNDYYLNLIDWSSQNFLAVALDNCVYLWNHSTGEIIQLLQIENPDDYVSSVS 240
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG +++QLWD + K +R++ H RV + SWN +IL+SGS+ I
Sbjct: 241 WIKEGNYLAVGTRNAEVQLWDVQQQKRLRSMTSHSSRVGSLSWN---SYILSSGSRTGHI 297
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC--LH 212
+HDVRV+ + + + HT EVCGLKWS +G LASGG+DNLV++W + S +
Sbjct: 298 HHHDVRVAEHHVATLTGHTQEVCGLKWSLDGRYLASGGNDNLVNIWPSVQGDSGDFTPVQ 357
Query: 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR 272
F H+ AVKA+AWCP+Q NVLA+GGGT D I+IWNV GTC+ +VD +Q+C + W+
Sbjct: 358 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGTCLSAVDAHSQVCSILWST 417
Query: 273 HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332
+KE +SGHGF+ + +L +WKYP M K EL+ T+R+L L+ SPDG+TV SAAADE
Sbjct: 418 TYKEFISGHGFAQN----QLVIWKYPTMAKVTELRGHTARVLNLTMSPDGVTVASAAADE 473
Query: 333 TLRFWEAF 340
TLR W F
Sbjct: 474 TLRLWRCF 481
|
|
| UNIPROTKB|Q12834 CDC20 "Cell division cycle protein 20 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 146/307 (47%), Positives = 210/307 (68%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N+LA+AL +YLW +G++ +LL++ ++ +S++
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 233
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG ++++QLWD + K +RN+ H RV + SWN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHI 290
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC-LHR 213
+HDVRV+ + + ++ H+ EVCGL+W+ +G LASGG+DNLV+VW + L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 350
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
F H+ AVKA+AWCP+Q NVLA+GGGT D I+IWNV G C+ +VD +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 410
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333
+KE++SGHGF+ + +L +WKYP M K EL+ TSR+L L+ SPDG TV SAAADET
Sbjct: 411 YKELISGHGFAQN----QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 466
Query: 334 LRFWEAF 340
LR W F
Sbjct: 467 LRLWRCF 473
|
|
| UNIPROTKB|Q5H7C0 CDC20 "Cell division cycle protein 20 homolog" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 145/307 (47%), Positives = 209/307 (68%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N+LA+AL +YLW +G++ +LL++ D+ +S++
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVA 233
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG ++++QLWD + K +RN+ H RV + WN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWN---SYILSSGSRSGHI 290
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC-LHR 213
+HDVRV+ + + ++ H+ EVCGL+W+ +G LASGG+DNLV+VW + L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 350
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
F H+ AVKA+AWCP+Q NVLA+GGGT D I+IWNV G C+ +VD +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 410
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333
+KE++SGHGF+ + +L +WKYP M K EL+ T+R+L L+ SPDG TV SAAADET
Sbjct: 411 YKELISGHGFAQN----QLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADET 466
Query: 334 LRFWEAF 340
LR W F
Sbjct: 467 LRLWRCF 473
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 364 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-44 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-29 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-27 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-05 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 6e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.001 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 2e-44
Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 17/273 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W E GE+ + LK G ++ S D LA G ++LWD ET + +R L
Sbjct: 33 IKVWDLETGELLRTLK--GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V++ ++ +G IL+S S+DK+I DV +T+ + HT V + +S +G
Sbjct: 91 GHTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGT 148
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246
+AS D + +WD + + KC+ H V ++A+ P +L+S DG IK
Sbjct: 149 FVASSSQDGTIKLWD---LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIK 202
Query: 247 IWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305
+W++ G C+ ++ + + ++ + SG S DG + +W
Sbjct: 203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG-----SEDG-TIRVWDLRTGECVQT 256
Query: 306 LQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
L T+ + L+ SPDG + S +AD T+R W+
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 5e-33
Identities = 78/274 (28%), Positives = 135/274 (49%), Gaps = 17/274 (6%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
T +++S D K LA G +++WD ET +L+R L+GH V + + ++ SGS
Sbjct: 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA-SGSS 71
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DK+I D+ + + HT+ V + +S +G +L+S D + VWD + + KC
Sbjct: 72 DKTIRLWDLE-TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD---VETGKC 127
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLE 269
L R H V ++A+ P +AS QDG IK+W+++ G C+ ++ ++ +
Sbjct: 128 LTTLRGHTDWVNSVAFSPDG-TFVASSS--QDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW-GELQHQTSRILELSQSPDGLTVVSA 328
++ +++L SSS DG + LW K G L+ + + ++ SPDG + S
Sbjct: 185 FSPDGEKLL-----SSSSDGT-IKLWD-LSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237
Query: 329 AADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
+ D T+R W+ H + + SL SP
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP 271
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-29
Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 15/284 (5%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRN- 124
+ LW G+ L G D +S+++S D L ++LWD T KL+R+
Sbjct: 180 IKLWDLRTGKPLSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH V ++ +G +L SGS D +I D+R S+++ ++ H++ V + +S +
Sbjct: 238 LSGHSDSVVSSF--SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
G LLASG D V +WD + + H V +L++ P ++L SGG DG
Sbjct: 296 GKLLASGSSDGTVRLWD-LETGKLLSSLTLKGHEGPVSSLSFSP-DGSLLVSGGSD-DGT 352
Query: 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304
I++W+++ G + +++ + + + ++ + + SG S DG + LW +
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG-----STDGT-VRLWDLSTGSLLR 406
Query: 305 ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF 348
L TSR+ L SPDG ++ S ++D T+R W+ S F
Sbjct: 407 NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 3e-27
Identities = 82/300 (27%), Positives = 140/300 (46%), Gaps = 17/300 (5%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-SKLQLWDAETSKLIRNL 125
+ LW + + + G + TS+++S D K LA G ++LWD T K + L
Sbjct: 136 VKLWDLST-PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185
GH V++ +++ G ++ SGS D +I D+ + S ++ H+ V +S +G
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDG 253
Query: 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
+LLASG D + +WD SSS L H ++V ++A+ P +LASG DG +
Sbjct: 254 SLLASGSSDGTIRLWDLR--SSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSS--DGTV 308
Query: 246 KIWNVQKGTCIHS---VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302
++W+++ G + S + + L ++ ++SG + + LW
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT-----IRLWDLRTGKP 363
Query: 303 WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
L+ S +L +S SPDG V S + D T+R W+ S + H + SL SP
Sbjct: 364 LKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-24
Identities = 61/243 (25%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180
L R L+GH V +++ + T GS D +I D+ + + + HT V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLAT-GSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVA 58
Query: 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240
S +G LASG D + +WD + + +C+ H + V ++A+ P +L+S
Sbjct: 59 ASADGTYLASGSSDKTIRLWD---LETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSS-- 112
Query: 241 QDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299
+D IK+W+V+ G C+ ++ + + ++ SSS DG + LW
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-----FVASSSQDGT-IKLWDLRT 166
Query: 300 MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLK 359
L T + ++ SPDG ++S+++D T++ W+ G H +G+ S+
Sbjct: 167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226
Query: 360 VSP 362
SP
Sbjct: 227 FSP 229
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.5 bits (171), Expect = 3e-13
Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 11/216 (5%)
Query: 52 DWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKL 111
+ + + + + LW + L ++G S+++S D K LA G +
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSS-SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 112 QLWDAETSKLI--RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169
+LWD ET KL+ L+GH+ V++ S++ +++ GS D +I D+R + +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 170 NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY 229
V + +S +G +++SG D V +WD +S+ L H + V +L + P
Sbjct: 369 GHSN--VLSVSFSPDGRVVSSGSTDGTVRLWD---LSTGSLLRNLDGHTSRVTSLDFSPD 423
Query: 230 QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI 265
LASG D I++W+++ S ++
Sbjct: 424 G-KSLASGS--SDNTIRLWDLKTSLKSVSFSPDGKV 456
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.3 bits (147), Expect = 3e-10
Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 10/223 (4%)
Query: 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199
G + + + V + + + + H + + +S +G LL SG D + +
Sbjct: 32 SLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKL 91
Query: 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259
WD H ++V LA N + + DG +K+W++ +
Sbjct: 92 WDLDNGEKLIKSLEG-LHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 260 --DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317
+ L ++ K + S S + LW L T + L+
Sbjct: 151 LEGHSESVTSLAFSPDGKLL-----ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205
Query: 318 QSPDG-LTVVSAAADETLRFW-EAFGPSGSGDFVSHLDGLLSL 358
SPDG L + S ++D T+R W + G H D ++S
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-06
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201
S + + HT V + +S +G LASG DD + +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 21/174 (12%)
Query: 171 AHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY 229
A +++ G+ W++ + +AS + +V VWD ++ S+ + ++H V ++ +
Sbjct: 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWD---VARSQLVTEMKEHEKRVWSIDYSSA 586
Query: 230 QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289
+LASG + DG +K+W++ +G I ++ TKA IC +++ SG +
Sbjct: 587 DPTLLASG--SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSE-----SGRSLAFGSAD 639
Query: 290 QKLCLW-----KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
K+ + K P T G +T + D T+VS++ D TL+ W+
Sbjct: 640 HKVYYYDLRNPKLPLCTMIG--HSKTVSYVRFV---DSSTLVSSSTDNTLKLWD 688
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-06
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201
+ + HT V + +S +GNLLASG DD V VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-05
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
S + L + H V ++A+ P LASG DG IK+W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDG-KYLASGS--DDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247
L D +VH+ H+K K +++ P NVLAS G D + +
Sbjct: 110 LTQNISDPIVHLQGHTK----KV-----------GIVSFHPSAMNVLASAGA--DMVVNV 152
Query: 248 WNVQKGTCIHSVDTKA-QICGLEWN 271
W+V++G + + + QI LEWN
Sbjct: 153 WDVERGKAVEVIKCHSDQITSLEWN 177
|
Length = 493 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 2e-04
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
K L + H V ++A+ P N+LASG DG +++W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDG-NLLASGSD--DGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 91 TSISWSQDAKT-LAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGS 149
+ I W+ K+ +A +Q+WD S+L+ ++ H+KRV + ++ + +L SGS
Sbjct: 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS 595
Query: 150 QDKSI----INHDVRVSNNVTSRINAHTAEVCGLKW-SNEGNLLASGGDDNLVHVWD 201
D S+ IN V + T A +C +++ S G LA G D+ V+ +D
Sbjct: 596 DDGSVKLWSINQGVSIGTIKTK------ANICCVQFPSESGRSLAFGSADHKVYYYD 646
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 8/154 (5%)
Query: 118 TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVC 177
S I +L+GH K+V S++ ++L S D + DV V I H+ ++
Sbjct: 114 ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV-IKCHSDQIT 172
Query: 178 GLKWSNEGNLLASGGDDNLVHVWD--HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
L+W+ +G+LL + D +++ D + SS H + + W + ++
Sbjct: 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL----WAKRKDLIIT 228
Query: 236 SGGGT-QDGCIKIWNVQKGTCIHSVDTKAQICGL 268
G Q I +W+ +K +S Q L
Sbjct: 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL 262
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 364 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 100.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 100.0 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 100.0 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 100.0 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| PTZ00420 | 568 | coronin; Provisional | 99.98 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.97 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.96 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.96 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.96 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.96 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.96 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.95 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.95 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.95 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.95 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.95 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.95 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.94 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.93 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.93 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.93 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.92 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.92 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.92 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.91 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.91 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.91 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.91 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.91 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.9 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.9 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.89 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.89 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.89 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.88 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.88 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.88 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.88 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.88 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.87 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.87 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.85 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.85 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.85 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.85 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.85 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.84 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.84 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.83 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.83 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.83 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.83 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.83 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.82 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.82 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.82 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.8 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.8 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.8 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.79 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.79 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.78 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.78 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.77 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.77 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.77 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.76 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.76 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.75 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.74 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.74 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.74 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.73 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.72 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.72 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.71 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.71 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.7 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.69 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.69 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.67 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.67 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.67 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.67 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.66 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.62 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.61 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.59 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.53 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.52 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.52 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.52 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.52 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.51 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.48 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.47 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.47 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.47 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.46 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.45 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.44 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.43 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.42 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.41 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.41 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.4 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.39 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.39 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.39 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.36 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.35 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.34 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.32 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.29 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.29 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.28 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.28 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 99.27 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.2 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.2 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.19 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.19 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.19 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.16 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.14 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.11 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.1 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.1 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.08 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.06 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.05 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.05 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.05 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.99 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.98 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.98 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.97 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.97 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.95 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.95 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.89 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.89 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.89 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.89 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.87 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.86 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.86 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.85 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.85 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.83 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.83 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.82 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.81 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.79 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.79 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.76 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.72 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.71 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.68 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.67 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.65 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.63 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.63 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.62 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.59 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.53 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.5 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.49 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.45 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.44 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.44 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.43 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.41 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.4 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.37 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.35 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.31 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.25 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.21 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.19 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.15 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.13 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.13 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.12 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 98.1 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.1 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.02 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.99 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.93 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.93 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.88 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.88 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.88 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.85 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.84 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.79 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.75 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.75 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.73 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.73 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.71 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.67 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.67 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.6 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.57 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.54 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.53 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.51 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.42 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.39 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.38 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.33 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.26 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.23 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.21 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.14 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.12 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.12 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.11 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.09 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.07 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.06 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.05 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.02 | |
| PRK10115 | 686 | protease 2; Provisional | 96.93 | |
| PRK10115 | 686 | protease 2; Provisional | 96.92 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.92 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.9 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.9 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.87 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.72 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.72 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.65 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.65 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.6 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.53 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.5 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.38 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.36 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.3 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.29 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.26 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 96.22 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.21 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.16 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.16 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 96.11 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.09 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.06 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.97 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.94 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.84 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 95.76 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.6 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.52 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.52 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.48 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.39 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.38 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.24 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 95.16 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 95.15 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 95.14 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 95.03 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.97 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 94.89 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.68 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.59 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.59 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.47 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.45 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.31 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 94.27 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.03 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.99 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 93.9 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.86 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.71 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.58 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.49 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 93.48 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 93.37 | |
| COG4880 | 603 | Secreted protein containing C-terminal beta-propel | 93.24 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 93.2 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 92.59 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.59 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 92.57 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.31 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 92.06 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 92.03 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 91.99 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.95 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.71 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 91.67 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.59 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 91.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 91.51 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 91.44 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 91.43 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.42 | |
| PLN02193 | 470 | nitrile-specifier protein | 91.28 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 90.78 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 88.87 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 88.71 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 88.54 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.43 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 88.42 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 88.4 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 88.29 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 88.13 | |
| PLN02153 | 341 | epithiospecifier protein | 88.12 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 88.02 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 87.58 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 87.5 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 86.79 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 86.51 | |
| PF09826 | 521 | Beta_propel: Beta propeller domain; InterPro: IPR0 | 86.25 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 85.84 | |
| PF15525 | 200 | DUF4652: Domain of unknown function (DUF4652) | 85.3 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=334.45 Aligned_cols=301 Identities=24% Similarity=0.411 Sum_probs=265.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee-ee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI-RN 124 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~ 124 (364)
+-++.|+|+ .+++++.|.++++||+.+... .+++++|...|.|++|+|||+.||+|+.||.|++||.++|+++ ..
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc
Confidence 666777774 588888999999999998765 5667799999999999999999999999999999999998765 57
Q ss_pred eecCCCcEEEEEeecC----CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 125 LEGHDKRVATASWNHW----NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
+.+|...|++++|.|- ..++|++++.||.++|||+..+. .+..+.+|..+|+|+.|--+| ++++|+.|++|++|
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw 273 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVW 273 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCCc-eEEecCCCceEEEE
Confidence 8999999999999752 56799999999999999998665 477888999999999998766 99999999999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEc-----------cCCC------------------------cEEEeecCCCCCeE
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWC-----------PYQF------------------------NVLASGGGTQDGCI 245 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~------------------------~~~~~~~g~~d~~i 245 (364)
+... +.....+++|...|+.++.+ |.+. ..+++|+ .|.++
T Consensus 274 ~a~d---G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tl 348 (480)
T KOG0271|consen 274 RALD---GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTL 348 (480)
T ss_pred Eccc---hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceE
Confidence 9665 46688999999999998876 2232 2577766 99999
Q ss_pred EEEECCCC-eEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC
Q 040533 246 KIWNVQKG-TCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL 323 (364)
Q Consensus 246 ~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 323 (364)
.+|+.... +++..+.. ..-|+.+.|||++++++++.- |..|++|+.++|+.+..+++|-+.|+.++|+.|.+
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEEeec------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 99997654 45555544 466999999999999999854 99999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 324 TVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 324 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+|++||.|.++++|++++.+....+.+|.+.|.++.|||.
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 9999999999999999999999999999999999999995
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=344.25 Aligned_cols=313 Identities=48% Similarity=0.883 Sum_probs=293.2
Q ss_pred CCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE
Q 040533 23 GSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL 102 (364)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 102 (364)
++..+.+++.|++++++|.+.+|||.+.++|+..+.++++.+..|++|+..+++...+..+. .+.|+++.|+++|++|
T Consensus 155 r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~L 232 (484)
T KOG0305|consen 155 RKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHL 232 (484)
T ss_pred ccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEE
Confidence 35567999999999999999999999999999999999999999999999999987777753 8899999999999999
Q ss_pred EEEecCCcEEEEecCCcceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEE
Q 040533 103 AVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW 181 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 181 (364)
|+|..+|.|.|||..+.+.+..+.+ |...|.+++| +...+.+|+.++.|..+|++..+.....+.+|...|..++|
T Consensus 233 avG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW---~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 233 AVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW---NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred EEeecCCeEEEEehhhccccccccCCcCceeEEEec---cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 9999999999999999999999998 9999999999 68899999999999999999988766668899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 182 SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 182 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
++|+.++|+|+.|+.+.|||... ..+...+..|.+.|..++|+|....+||+|+|+.|+.|++||..+++.+..+..
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~~---~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGLS---PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCCCCeeccCCCccceEeccCCC---ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 99999999999999999999743 456888899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.++|+.+.|++..+.++++.++. ++.|.||++.+.+++..+.+|...|..++++|||..+++|+.|.++++|++..
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s----~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYS----ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCC----CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 99999999999999999998876 88999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcc
Q 040533 342 PSGSGD 347 (364)
Q Consensus 342 ~~~~~~ 347 (364)
......
T Consensus 463 ~~~~~~ 468 (484)
T KOG0305|consen 463 ERPKST 468 (484)
T ss_pred CCCccc
Confidence 644433
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=314.92 Aligned_cols=266 Identities=22% Similarity=0.403 Sum_probs=249.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
+...+|..+.|++|++.||+|+.+|.++||+..+...+.++.+|...|.++.|+|. ++..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56789999999999999999999999999999999999999999999999999996 36799999999999999998665
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
++..+.+|...|..++|+|+|++|++++.|.+-++||+++... +....+|...|.+++|.|+| .++++|| .|.
T Consensus 253 -~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~iaf~~DG-SL~~tGG--lD~ 325 (459)
T KOG0272|consen 253 -PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFSIAFQPDG-SLAATGG--LDS 325 (459)
T ss_pred -chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh---hHhhcccccccceeEecCCC-ceeeccC--ccc
Confidence 4788899999999999999999999999999999999988644 66678999999999999999 7889987 999
Q ss_pred eEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-C
Q 040533 244 CIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-D 321 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~ 321 (364)
.-+|||+++++++..+..+ .+|.+++|+|+|..+++|+. |++++|||++..+.+..+.+|.+-|+.+.|+| .
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~------Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS------DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCC------CCcEEEeeecccccceecccccchhhheEecccC
Confidence 9999999999999999876 77999999999999999855 99999999999999999999999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 322 GLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|.+|+|++.|++++||...+..+++.+.||.+.|.++..+|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d 441 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPD 441 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccC
Confidence 889999999999999999999999999999999999999986
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=308.20 Aligned_cols=274 Identities=23% Similarity=0.423 Sum_probs=243.0
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
.+.+|.++|.|++|+|+|..||+|+.|.++++||+.+..+..+.++|..-|.|++|+| ++..||+|+.||+|++||.++
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CcceeeeeecccCcEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 162 SNNVTSRINAHTAEVCGLKWSN-----EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+++....+.+|...|++++|.| ..++||+++.||.++|||+.. ..++..+.+|..+|+|+.|-.+ .++.+
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG~--gliyS 263 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGGE--GLIYS 263 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC---ceEEEEeccCccceEEEEEcCC--ceEEe
Confidence 9999999999999999999987 457999999999999999765 4568999999999999999755 58888
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEc-----------CCcccee-------------------eeccCCc
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWN-----------RHHKEIL-------------------SGHGFSS 285 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~-----------~~~~~l~-------------------~~~~~~~ 285 (364)
++ .|++|++|+...|.+.+.+..+ ..|+.++.+ |.++..- .+....+
T Consensus 264 gS--~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 264 GS--QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred cC--CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 76 9999999999999999888776 457777766 3333300 0011234
Q ss_pred cCCCCeEEEeeCCC-CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 286 SGDGQKLCLWKYPH-MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 286 ~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|.++.+|+... .+++..+.+|...|..+.||||++++|++|-|..|++|+-.+++.+.+|.+|-++|+.++||..
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC
Confidence 47799999999754 5588889999999999999999999999999999999999999999999999999999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=312.21 Aligned_cols=276 Identities=18% Similarity=0.368 Sum_probs=250.3
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCccee
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.+..+.++.+ .+++++.+|.+++|+..+... +..+.+|...|.++.|+|. +..+|+|+.||++++|++.+...+
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~--~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l 254 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL--LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL 254 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcce--eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence 3455556654 588899999999999988854 5566799999999999996 568999999999999999999999
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
..+.+|...|..++|+| +|++|++++.|.+-++||++++.. .....+|...|.+++|++||.++++|+.|..-+|||+
T Consensus 255 ~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred hhhhcchhhheeeeecC-CCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 99999999999999999 999999999999999999998876 5567799999999999999999999999999999999
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcC-Cccceeee
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNR-HHKEILSG 280 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~-~~~~l~~~ 280 (364)
+++. ++..+.+|..+|.+++|+|+| +.+++|+ .|++++|||++..+.+.++..+ +-|+.+.|+| .|.+|+++
T Consensus 333 Rtgr---~im~L~gH~k~I~~V~fsPNG-y~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 333 RTGR---CIMFLAGHIKEILSVAFSPNG-YHLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred ccCc---EEEEecccccceeeEeECCCc-eEEeecC--CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 9864 488999999999999999999 8888876 8999999999999998888766 5689999999 67777766
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.. |++++||...++.+++.+.+|.+.|.++++++|++++++++.|.++++|.
T Consensus 407 sy------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SY------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cc------CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 43 99999999999999999999999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=280.87 Aligned_cols=287 Identities=21% Similarity=0.428 Sum_probs=254.2
Q ss_pred CCcEEeeCCCCCCCcceeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC
Q 040533 31 QKEARILDAPNLRNDYYSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA 108 (364)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 108 (364)
....+++.... +. +.+++|+++ ++++++.||.+.|||.-+....+.+.+ ....|..++|+|.|+++|+|+-|
T Consensus 45 ~~~rr~LkGH~--~K--i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 45 MRTRRTLKGHL--NK--IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred eeeEEEecccc--cc--eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEECCCCCeEEecCcC
Confidence 34445555432 22 778889886 588899999999999888766555554 47899999999999999999999
Q ss_pred CcEEEEecCCc------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 109 SKLQLWDAETS------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 109 g~i~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
+...||++.+. +..+.+.+|.+.+.++.|.+ ...|++++.|.+..+||+++++. ...+.+|.+.|.+++++
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLS 195 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecC
Confidence 99999999855 44567889999999999974 66788999999999999998875 77889999999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 183 N-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 183 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
| +++.+++|+-|+..++||+|.+ .+.+.|.+|.+.|+++.|.|+| .-+++|+ .|++.++||++..+.+..+.+
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~---~c~qtF~ghesDINsv~ffP~G-~afatGS--DD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSG---QCVQTFEGHESDINSVRFFPSG-DAFATGS--DDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred CCCCCeEEecccccceeeeeccCc---ceeEeecccccccceEEEccCC-CeeeecC--CCceeEEEeecCCcEEeeecc
Confidence 9 9999999999999999999875 5699999999999999999999 6777765 999999999999999998876
Q ss_pred C---CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 262 K---AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 262 ~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
. .+|++++||..|++|++|.. |..+.+||.-.++.+..+.+|++.|+++..+|||.-+++||.|.+++||.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYD------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcccCCceeEEEcccccEEEeeec------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 5 56999999999999999865 99999999999999999999999999999999999999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=277.66 Aligned_cols=273 Identities=21% Similarity=0.381 Sum_probs=237.9
Q ss_pred CccEEEEEeCCeEEEEECCCCcee---eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCc
Q 040533 55 RNNILAIALGLELYLWKQENGEVQ---KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKR 131 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 131 (364)
++-++.++.|..+.+|++...... ....+.||+..|..+..++||++.++++.|+++++||+.+++..+.|.+|...
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD 107 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc
Confidence 355788889999999998754332 25566799999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCc
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSK 209 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~ 209 (364)
|.+++|+| +...+++|+.|.+|++|+..........-..+...|.|+.|+|+ ..+|++++.|++|++||+++.+
T Consensus 108 Vlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--- 183 (315)
T KOG0279|consen 108 VLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--- 183 (315)
T ss_pred eEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---
Confidence 99999999 99999999999999999987554322222233789999999997 6899999999999999988754
Q ss_pred ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
....+.+|.+.++.++++||| .+.++|+ .||.+.+||++.++.+..+.+...|.+++|+|+...|+++. +
T Consensus 184 l~~~~~gh~~~v~t~~vSpDG-slcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-------~ 253 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTVTVSPDG-SLCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-------A 253 (315)
T ss_pred hhhccccccccEEEEEECCCC-CEEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-------C
Confidence 477788999999999999999 7888887 99999999999999999999999999999999999888876 6
Q ss_pred CeEEEeeCCCCceeeeccc----c-----ccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 290 QKLCLWKYPHMTKWGELQH----Q-----TSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~~----~-----~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
..|+|||+.+...+.++.. . .-...+++|++||..|++|-.|+.|++|.+..
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 7799999999888877652 1 22356789999999999999999999999753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=260.57 Aligned_cols=287 Identities=17% Similarity=0.317 Sum_probs=243.9
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATA 135 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~ 135 (364)
+++++.|.+|++|...+|.+...+. ...+.|..+.+.|+++.||+++ ...|++||+.++. ++.++.+|.+.|+++
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 6677889999999999999866554 5577899999999999999997 5689999998875 578999999999999
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
.|.. +++.+++|++||+++|||++... ......|..+|+++..+|+...|++|..+|.|++||+....... ....
T Consensus 90 gF~~-dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP 164 (311)
T KOG0315|consen 90 GFQC-DGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP 164 (311)
T ss_pred EEee-cCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence 9999 99999999999999999999754 34455688999999999999999999999999999998753311 1122
Q ss_pred ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe------EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCC
Q 040533 216 DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT------CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
....+|.++...|+|..+.+.. ..|..++|++-+.. ++.+++ +.+.+..+.+||++++|++++.
T Consensus 165 e~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss------ 235 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS------ 235 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC------
Confidence 3456899999999996665543 68999999997643 334444 3467999999999999998855
Q ss_pred CCeEEEeeCCCC-ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 289 GQKLCLWKYPHM-TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 289 ~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
|.+++||+.++. +....+++|...+...+||.||+||++|+.|+.+++|++..++.+..+.+|..+..+++..
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999988 6666788999999999999999999999999999999999999999999998888887754
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=264.39 Aligned_cols=270 Identities=20% Similarity=0.362 Sum_probs=245.7
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+++|.+.|.++.|++|.+++++++.||.+.|||.-+......++-....|..++|+| .++++|+|+-|+...||++.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecc
Confidence 55679999999999999999999999999999999999988888888888999999999 99999999999999999998
Q ss_pred cC--c---ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 161 VS--N---NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 161 ~~--~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
+. + +..+.+.+|.+.+.++.|-+|+ .|++++.|.+..+||++++ +.+..+.+|.+.|.+++++|...+.++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEE
Confidence 65 2 3456788999999999998854 7899999999999998875 448999999999999999996668888
Q ss_pred eecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc--ccc
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ--TSR 312 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~ 312 (364)
+|+ -|+..++||++.+.+++++..+ +.|+++.|.|+|.-+++| ++|++.++||++..+.+..+... ..+
T Consensus 204 Sg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG------SDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 204 SGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG------SDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred ecc--cccceeeeeccCcceeEeecccccccceEEEccCCCeeeec------CCCceeEEEeecCCcEEeeeccCcccCC
Confidence 877 8999999999999999999765 779999999999988887 56999999999999988887632 357
Q ss_pred eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 313 ILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 313 i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|++++||..|++|++|..|.++.+||.-.++....+.+|.+.|.+|..+|.
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence 999999999999999999999999999999999999999999999999985
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=274.84 Aligned_cols=304 Identities=20% Similarity=0.395 Sum_probs=251.1
Q ss_pred eecccCCC--ccEEE-EEeCCeEEEEECCCC--ce------eeeeeec----CCCCCceEEEEcCCCCEEEEEecCCcEE
Q 040533 48 SNMMDWGR--NNILA-IALGLELYLWKQENG--EV------QKLLKVT----GEDDFPTSISWSQDAKTLAVGYMASKLQ 112 (364)
Q Consensus 48 ~~~~~~~~--~~~~~-~~~~~~i~iw~~~~~--~~------~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 112 (364)
+.+.+|+| +.+++ ++.+-..++|++... .. ...+... .....|++++|+.+|..||+|..||.++
T Consensus 181 V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 67788999 33555 456778999998741 11 1111111 2246799999999999999999999999
Q ss_pred EEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe
Q 040533 113 LWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 113 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
||+. .|.++.++..|.++|.++.|+. .+++|++++.|+++.+||..++.. ...+..|..+-..+.|-.+ ..+++++
T Consensus 261 iw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~-~~F~ts~ 336 (524)
T KOG0273|consen 261 IWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSN-DEFATSS 336 (524)
T ss_pred EEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecC-ceEeecC
Confidence 9995 5788889999999999999999 999999999999999999987764 6677778888778888754 4789999
Q ss_pred CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEc
Q 040533 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWN 271 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~ 271 (364)
.|+.|+++.+.. ..++.++.+|.+.|.++.|+|.+ .+|++++ .|++++||++........+..+ ..|..+.|+
T Consensus 337 td~~i~V~kv~~---~~P~~t~~GH~g~V~alk~n~tg-~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 337 TDGCIHVCKVGE---DRPVKTFIGHHGEVNALKWNPTG-SLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWS 410 (524)
T ss_pred CCceEEEEEecC---CCcceeeecccCceEEEEECCCC-ceEEEec--CCCeeEeeecCCCcchhhhhhhccceeeEeec
Confidence 999999999765 35688999999999999999998 6888876 8999999999888888777655 579999999
Q ss_pred CCcccee---eeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce
Q 040533 272 RHHKEIL---SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 272 ~~~~~l~---~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 348 (364)
|.|...- .+....+++.|+.|++||...+.++..+..|..+|.+++|+|+|+++|+|+.||.|.+|+.+.++..+.+
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 9765310 1111122345999999999999999999999999999999999999999999999999999999998887
Q ss_pred eccCCceeeeeecc
Q 040533 349 VSHLDGLLSLKVSP 362 (364)
Q Consensus 349 ~~~~~~v~~~~~sp 362 (364)
.+ .+.|..|+|+-
T Consensus 491 ~~-~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 491 QG-TGGIFELCWNA 503 (524)
T ss_pred cC-CCeEEEEEEcC
Confidence 65 66799999974
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=266.55 Aligned_cols=277 Identities=21% Similarity=0.382 Sum_probs=246.0
Q ss_pred ceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 46 YYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 46 ~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
--+++++|+.++ ++++..||.+++|+..... +..+..|.++|.++.|+.+|++|++++.||++.+||..++...+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 358999999754 6667789999999987654 35566899999999999999999999999999999999999999
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+..|..+-..+.|- +...+++++.|+.|+++.+....+ ...+.+|.++|.++.|+|.+.+|++++.|++++||...
T Consensus 313 ~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P-~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRP-VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred eeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCc-ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 999898887888996 677899999999999999986664 77788899999999999999999999999999999965
Q ss_pred CCCCCcceEEecccccceeEEEEccCCC--------cEEEeecCCCCCeEEEEECCCCeEEEEE-ecCCCeEEEEEcCCc
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQF--------NVLASGGGTQDGCIKIWNVQKGTCIHSV-DTKAQICGLEWNRHH 274 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~ 274 (364)
.. .....+.+|...|..+.|+|.++ ..+++++ .|++|++||+..+.++..+ ++..+|.+++|+|+|
T Consensus 390 ~~---~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 390 QS---NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG 464 (524)
T ss_pred CC---cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence 54 45788889999999999998763 4566665 8999999999999999998 677999999999999
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+++++|.. |+.|.+|+.++++..+.+.+. +.|..++|+.+|.+|..+-.||.+++-|++
T Consensus 465 ~ylAsGs~------dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 465 RYLASGSL------DGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cEEEecCC------CCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999965 999999999999999998765 459999999999999999999999999875
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=261.64 Aligned_cols=305 Identities=23% Similarity=0.384 Sum_probs=260.7
Q ss_pred CccccCCCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEE--EeCCeEEEEECCCCceeeeeeecCCCCCceEEE
Q 040533 17 SPRRLLGSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAI--ALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94 (364)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~ 94 (364)
.|....+.+..++|.+|...--. + ....+..+-++|...+.+ +.|++|++||..+++. ...+.+|.+.+.+++
T Consensus 83 ~pt~~~~~~~~wipRp~l~~~l~-g--~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~ 157 (406)
T KOG0295|consen 83 DPTGSKRTPALWIPRPNLVQKLA-G--HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDIS 157 (406)
T ss_pred CCCcCccChhhcCCCCCchhhhh-c--cccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEE
Confidence 45555555666676655442211 1 222366667788764433 3589999999999998 455669999999999
Q ss_pred EcCCCCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc
Q 040533 95 WSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT 173 (364)
Q Consensus 95 ~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 173 (364)
|+..|++||+++.|-.+++||.++ .++++.+.+|...|.++.|-| .++++++++.|.+|+.|++.++.+ +..+.+|.
T Consensus 158 ~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c-v~t~~~h~ 235 (406)
T KOG0295|consen 158 FDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC-VKTFPGHS 235 (406)
T ss_pred EecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEeccccee-EEeccCch
Confidence 999999999999998899999987 577788889999999999999 899999999999999999998876 78899999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC--------------CcEEEeecC
Q 040533 174 AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ--------------FNVLASGGG 239 (364)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~~~~g 239 (364)
..|..+..+.||.++++++.|.+|++|-+.+. ++...++.|..+|.+++|.|.. ..++.+++
T Consensus 236 ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~---~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S- 311 (406)
T KOG0295|consen 236 EWVRMVRVNQDGTIIASCSNDQTLRVWVVATK---QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS- 311 (406)
T ss_pred HhEEEEEecCCeeEEEecCCCceEEEEEeccc---hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-
Confidence 99999999999999999999999999997764 3466778899999999997742 24666655
Q ss_pred CCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEee
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
.|++|++||+.++.++.++..+ ..|..++|+|.|+||++. .+|+++++||+++++++..+..|..-++++.|
T Consensus 312 -rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc------aDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 312 -RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC------ADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred -ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE------ecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 9999999999999999998765 779999999999999987 45999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEe
Q 040533 319 SPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+.+..++++|+-|.++++|..
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 999999999999999999974
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=286.92 Aligned_cols=245 Identities=23% Similarity=0.408 Sum_probs=221.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-------------------------------ceeeeeecCCCcEE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-------------------------------KLIRNLEGHDKRVA 133 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------------~~~~~~~~~~~~v~ 133 (364)
.....++|..|++|+.+||.|..|..|++|.+... ...+++.+|.++|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 33556899999999999999999999999988631 12344678999999
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE
Q 040533 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR 213 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 213 (364)
.+.|+| +.++|+++++|+++++|.+.+... ...+.+|..+|..+.|+|-|.++|+++.|++.++|.... ..+++.
T Consensus 456 g~sFsP-d~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~---~~PlRi 530 (707)
T KOG0263|consen 456 GCSFSP-DRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH---NKPLRI 530 (707)
T ss_pred eeeecc-cccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc---CCchhh
Confidence 999999 999999999999999999998776 666779999999999999999999999999999999665 466888
Q ss_pred ecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeE
Q 040533 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 214 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i 292 (364)
+.+|.+.|.|+.|+|+. .++++|+ .|.++++||..+|..++.+.++ ++|.+++|||+|++|++|. +|+.|
T Consensus 531 faghlsDV~cv~FHPNs-~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~------ed~~I 601 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNS-NYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD------EDGLI 601 (707)
T ss_pred hcccccccceEEECCcc-cccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc------cCCcE
Confidence 99999999999999998 6777765 9999999999999999999765 8899999999999999985 49999
Q ss_pred EEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 293 CLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 293 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.+||+.+++.+..+.+|.+.|.++.|+.+|..||+|+.|++|++||+....
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999999999999999999999999999999999999987543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=272.82 Aligned_cols=283 Identities=20% Similarity=0.430 Sum_probs=242.2
Q ss_pred CCcceeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 43 RNDYYSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 43 ~~~~~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
.....++.+.|.|+ ++++++..|.+.+|+..+-.... .+..|...|.++.|++++.++++|+.+|.|++|+..-.
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt--ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn- 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET--ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN- 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHH--HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-
Confidence 33445788999996 48899999999999985544332 24489999999999999999999999999999997643
Q ss_pred eeeeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 121 LIRNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 121 ~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
.++.+.+| ...|++++|+| ++..|++++.||+|+|||.....+ ...+.+|.-.|.+++|+|...++++++.|..|++
T Consensus 171 nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 44455554 49999999999 999999999999999999986664 5567899999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCcccee
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 278 (364)
||.+++ .++.++.+|...|..+.|+|++ .+|++++ .|..++++|+++.+.++.+. +...+.++.|+|-..-|+
T Consensus 249 WDprSg---~cl~tlh~HKntVl~~~f~~n~-N~Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 249 WDPRSG---SCLATLHGHKNTVLAVKFNPNG-NWLLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred ecCCCc---chhhhhhhccceEEEEEEcCCC-CeeEEcc--CCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 997764 5699999999999999999999 6777766 99999999999888888887 457799999999877776
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+.. +.||.|..|.+...+++..+. +|...|++++|+|-|.+|++|+.|.++++|.-..
T Consensus 323 tsg-----g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 323 TSG-----GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eec-----cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 543 459999999999777776664 6999999999999999999999999999997543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=272.51 Aligned_cols=262 Identities=21% Similarity=0.431 Sum_probs=231.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
+..|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|+.+|+++.|++ ++.++++|+.+|.|++|+..... +
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnn--V 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNN--V 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhh--h
Confidence 45789999999999999999999999999865555556778999999999999 99999999999999999987544 4
Q ss_pred eeeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 167 SRINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 167 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
..+..|. ..|.+++|+|+...++++++||+|+|||...... ...+.+|.-.|.++.|+|.. .++++++ .|..|
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke---e~vL~GHgwdVksvdWHP~k-gLiasgs--kDnlV 246 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE---ERVLRGHGWDVKSVDWHPTK-GLIASGS--KDNLV 246 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch---hheeccCCCCcceeccCCcc-ceeEEcc--CCcee
Confidence 4455554 8999999999999999999999999999877544 55668999999999999986 7888876 89999
Q ss_pred EEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-CCC
Q 040533 246 KIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-DGL 323 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~ 323 (364)
++||.+++.++.++..+ ..|..+.|+|++++|++++ .|..++++|+++.+.+..+++|...++++.|+| ...
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s------kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS------KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc------CCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence 99999999999988654 6799999999999999984 499999999999999999999999999999999 456
Q ss_pred EEEEEeCCCcEEEEEeeCCCCCccee-ccCCceeeeeeccC
Q 040533 324 TVVSAAADETLRFWEAFGPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 324 ~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
+|.+|+.||.|..|.+...+++..+. .|...|++++|+|+
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred ceeeccCCCceEEEeccccccccCCCcccccceeeeecccc
Confidence 88999999999999999666655554 89999999999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=256.54 Aligned_cols=283 Identities=21% Similarity=0.314 Sum_probs=235.8
Q ss_pred CCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 42 LRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+....|..++..+.+-.++++.|..-.+|+..+++. ..++.+|++.|+++.||.+|.+||+|+.+|.|+||+..++..
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence 344544555544222355667889999999999984 566779999999999999999999999999999999999998
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
...+...-..+.-+.|+| .+.+|+.|+.||.+.+|.+.++. ..+.+.+|+.++++-.|.|+|+.++++..||+|++||
T Consensus 141 ~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 888876667888999999 99999999999999999998764 5788899999999999999999999999999999999
Q ss_pred CCCCCCCcceEEec---------------------------------------------------ccccceeEEEEccCC
Q 040533 202 HSKMSSSKCLHRFR---------------------------------------------------DHRAAVKALAWCPYQ 230 (364)
Q Consensus 202 ~~~~~~~~~~~~~~---------------------------------------------------~~~~~v~~~~~~~~~ 230 (364)
..+... +..+. .+...+.++.+.|..
T Consensus 219 ~ktg~p---~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 219 PKTGQP---LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred cCCCce---eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 876432 22222 111222333333332
Q ss_pred C--cEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 231 F--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 231 ~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
. -++++| +.||+|.|||+...+..+...+...|..+.|-+ ..+|+++.. +|.|+.||.++|+++..+.+
T Consensus 296 s~lpL~A~G--~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~------~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 296 SKLPLAACG--SVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA------NGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred cccchhhcc--cccceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc------CceEEeeeccccceEEEEec
Confidence 2 244554 499999999999999999999999999999999 778887755 99999999999999999999
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|...|.+++++|++++++|+|.|++.+||++.
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999864
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=263.15 Aligned_cols=276 Identities=20% Similarity=0.310 Sum_probs=245.2
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
...+.+|..+|+.+-|+|+-..++++++|++|++||..+++..+.+++|...+..++|+. .|.+|++++.|-.+.+||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeH
Confidence 344558999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
.+.....+...+|+..|.+++|-|.|.++++++.|.+|+.|++.++ .++.++.+|...|..+..+.|| .++++++
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DG-ti~As~s- 254 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDG-TIIASCS- 254 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc---eeEEeccCchHhEEEEEecCCe-eEEEecC-
Confidence 8765567778899999999999999999999999999999998875 5599999999999999999998 7888876
Q ss_pred CCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccce----eeec-----cCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 240 TQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEI----LSGH-----GFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l----~~~~-----~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
.|.++++|-+.++++...+. ++.++.+++|.|...+- +++. ....++.|++|++||+.++.++.++.+|
T Consensus 255 -~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 255 -NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred -CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 99999999999997776664 44678888888753321 1110 1123466999999999999999999999
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.+.|..++|+|.|+||+++.+|+++++||+++.+.++.+..|..-|+++.|.-
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=244.71 Aligned_cols=269 Identities=18% Similarity=0.295 Sum_probs=226.5
Q ss_pred eeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecC-----CcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 79 KLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAE-----TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 79 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
..-.+++|.+.|+.++..+. .+.+++++.|..+.+|++. .|..++.+.+|...|..+..++ ++++.++++.|+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~ 85 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDG 85 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccc
Confidence 34567799999999999886 5688999999999999975 3567889999999999999999 999999999999
Q ss_pred cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc--ccceeEEEEccCC
Q 040533 153 SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH--RAAVKALAWCPYQ 230 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~ 230 (364)
++++||+.+++ ....+.+|...|.+++|++|++.+++|+.|.+|++|++... +..+...+ .+.|.++.|+|..
T Consensus 86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~----ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV----CKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred eEEEEEecCCc-EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc----EEEEEecCCCcCcEEEEEEcCCC
Confidence 99999999885 47888999999999999999999999999999999997642 34444333 7899999999985
Q ss_pred -CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 231 -FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 231 -~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
+-++++++ .|++|++||+++.+....+..+ +.++.+++||||...++| +.||.+.+||++.++.+..+.
T Consensus 161 ~~p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG------gkdg~~~LwdL~~~k~lysl~- 231 (315)
T KOG0279|consen 161 SNPIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG------GKDGEAMLWDLNEGKNLYSLE- 231 (315)
T ss_pred CCcEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC------CCCceEEEEEccCCceeEecc-
Confidence 45677766 9999999999999888877654 679999999999999987 559999999999999988775
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee----cc-----CCceeeeeeccC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV----SH-----LDGLLSLKVSPI 363 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~----~~-----~~~v~~~~~sp~ 363 (364)
|...|.+++|+|+.-.|+.+. +..|+|||+.++..+..+. +. .-...+++||+.
T Consensus 232 a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d 294 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD 294 (315)
T ss_pred CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC
Confidence 678999999999986666554 4569999999988876654 21 122457788753
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=261.28 Aligned_cols=303 Identities=19% Similarity=0.296 Sum_probs=245.8
Q ss_pred eeecccCCCc---cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGRN---NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~~---~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.++++++-|. ++++++.|+.|.+|+-..-+. ...+..|...|.|+.|+|||.++|+++.||+|.+||-.+++.+.
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF--k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF--KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCCCeee--eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE
Confidence 3566777664 478888999999998655444 34455899999999999999999999999999999999999999
Q ss_pred eee---cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc-------------------------------------
Q 040533 124 NLE---GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------------------------------------- 163 (364)
Q Consensus 124 ~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------------------------------- 163 (364)
.+. +|.+.|.+++|+| ++..+++++.|.++++||+.+..
T Consensus 227 ~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred EecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 998 8999999999999 99999999999999999987543
Q ss_pred -----ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcc--------e-------------------
Q 040533 164 -----NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC--------L------------------- 211 (364)
Q Consensus 164 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------~------------------- 211 (364)
.+...+.+|...|+++..+|++++|++|+.||.|.-||...+...+. +
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence 12334578999999999999999999999999999999765321100 0
Q ss_pred -------------------------------------------EEeccc--------ccceeEEEEccCCCcEEEeecCC
Q 040533 212 -------------------------------------------HRFRDH--------RAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 212 -------------------------------------------~~~~~~--------~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
..++.+ .-...+++++|++ ..++.|+
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG-- 462 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGG-- 462 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEec--
Confidence 000000 1124567788887 5566666
Q ss_pred CCCeEEEEECCCCeE---EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee-ccccccceeEE
Q 040533 241 QDGCIKIWNVQKGTC---IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILEL 316 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~i 316 (364)
.|+.|++|.+..+.. ....++.++++.+++||++.+|+++.. .+.+.+||..+.+.... +.-|...|.++
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da------~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA------SRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc------CCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 999999999987553 344567899999999999999999966 89999999998877433 34599999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-ccCCceeeeeec
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-SHLDGLLSLKVS 361 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s 361 (364)
+|+|+..++|+|+.|-.|.||+++.+......+ .|...|+.|.|-
T Consensus 537 aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred EeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe
Confidence 999999999999999999999999887654443 688889999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=272.55 Aligned_cols=288 Identities=17% Similarity=0.352 Sum_probs=243.6
Q ss_pred eeecccCCC-ccEEEEEeC--CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGR-NNILAIALG--LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~-~~~~~~~~~--~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.+..++|+. +..+|.++. |.+.||+.++... ++..++|...+++++++|||+++|+|++||+|+|||..++-+..
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV 386 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE
Confidence 345566664 345555554 5999999988765 45556999999999999999999999999999999999999999
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC-eEEEEeC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN-LVHVWDH 202 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~ 202 (364)
++..|...|+.+.|+. .++.+++.+-||+|+.||+..................|++..|.|.+++.|+.|. .|.+|++
T Consensus 387 TFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~ 465 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV 465 (893)
T ss_pred EeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEe
Confidence 9999999999999999 9999999999999999999877764443334445678999999999999998876 6999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
.++ +.+..+.+|.++|.+++|+|.+ .++++++ .|.+|++||+-.. ..+.+++....+..++|.|+|+.++++.
T Consensus 466 qTG---qllDiLsGHEgPVs~l~f~~~~-~~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 466 QTG---QLLDILSGHEGPVSGLSFSPDG-SLLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred ecC---eeeehhcCCCCcceeeEEcccc-CeEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE
Confidence 775 5588899999999999999999 5888876 9999999998653 4667788889999999999999999987
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccc--------------------cccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQH--------------------QTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~--------------------~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
. ||.|.+||...+..+..+.+ .....+.+++++||..+++|+..+.|++|++.+
T Consensus 540 l------dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 540 L------DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred e------cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 6 99999999987666544331 235689999999999999999999999999999
Q ss_pred CCCCccee
Q 040533 342 PSGSGDFV 349 (364)
Q Consensus 342 ~~~~~~~~ 349 (364)
+-.++.+.
T Consensus 614 ~vllkkfq 621 (893)
T KOG0291|consen 614 GVLLKKFQ 621 (893)
T ss_pred hheeeeEE
Confidence 87776554
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=238.99 Aligned_cols=269 Identities=17% Similarity=0.282 Sum_probs=241.3
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
...+..++++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|..++.+. +...|++|+.|..+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEc
Confidence 344568899999999999999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
.+++. .+.+.+|.+.|+.+.|+.+...+++|+.|..+++||.+... .++++.+......|.++..+. ..+++|+
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v~~---heIvaGS- 162 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDVAE---HEIVAGS- 162 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC-CCccchhhhhcCceeEEEecc---cEEEeec-
Confidence 98885 78899999999999999999999999999999999999754 578888888889999999875 4566654
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce--eEEe
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI--LELS 317 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~i~ 317 (364)
.||+++.||++.|+....+ ...+|+++.|+++++..+++.. ++.+++.|-.+++.+..+++|.+.- ...+
T Consensus 163 -~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l------~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 163 -VDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSL------DSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred -cCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeec------cceeeecccchhHHHHHhcccccceeeeeee
Confidence 9999999999999765443 4578999999999999999865 9999999999999999999997654 3556
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCc-eeeeeeccC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDG-LLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-v~~~~~sp~ 363 (364)
++.....+++|++||.|++||+.....+..+..+... |.+++++|.
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 7777789999999999999999999999888888877 899999986
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=237.40 Aligned_cols=279 Identities=21% Similarity=0.394 Sum_probs=227.6
Q ss_pred eeecccCCCcc---EEEEEeCCeEEEEECCCCceeeee--eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--
Q 040533 47 YSNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLL--KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-- 119 (364)
Q Consensus 47 ~~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-- 119 (364)
.+-.++|+|.. +.+++.|+.|++|+...+...... .-.+|+..|.+++|+|.|++||+|+.|.++.||.-..+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 37778999973 555678899999998853321111 12389999999999999999999999999999986644
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
+++..+++|...|.+++|++ +|++||++++|+.|.+|.+.... .....++.|...|..+.|+|...+|++++.|.+|
T Consensus 96 ecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred eEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence 67889999999999999999 99999999999999999988544 3466788999999999999988899999999999
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccce
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI 277 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l 277 (364)
++|+-.......++.++.+|...|.+++|+|.| .-+++++ .|++++||-..+.- ...+..++..+.|. ...+
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~s--dD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCS--DDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred EEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEec--CCcceEeeeeccCc---chhcccceEeeeec--ccce
Confidence 999877566678899999999999999999999 4555655 89999999866321 11234678889998 4556
Q ss_pred eeeccCCccCCCCeEEEeeCCCC------ceee-eccccccceeEEeecCC-CCEEEEEeCCCcEEEEEee
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHM------TKWG-ELQHQTSRILELSQSPD-GLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~------~~~~-~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~ 340 (364)
+++.+ |+.|++|.-... +.+. .-..|...|++++|+|. ..+|++|+.||.|++|.+.
T Consensus 247 aS~gg------D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGG------DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccC------CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 66644 999999976542 1122 23468889999999994 6799999999999999875
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=278.35 Aligned_cols=265 Identities=25% Similarity=0.498 Sum_probs=237.3
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
+...|.++.|+++|+.+++++.++.+++|+...++ ..+.+.+|...|..++|+| ++.++++++.|++|++||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCC
Confidence 37889999999999999999999999999998777 7777889999999999999 99999999999999999996665
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
..++.+.+|...|++++|+|+++++++|+.|++|++||+++ .+++..+.+|.+.|.+++|++++ .++++++ .|+
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s--~d~ 310 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDG-NLLVSAS--YDG 310 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCC-CEEEEcC--CCc
Confidence 66888999999999999999999999999999999999887 46699999999999999999999 4555555 899
Q ss_pred eEEEEECCCCe--EEEEEecC--C-CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc---eeE
Q 040533 244 CIKIWNVQKGT--CIHSVDTK--A-QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR---ILE 315 (364)
Q Consensus 244 ~i~i~d~~~~~--~~~~~~~~--~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---i~~ 315 (364)
.|++||+.++. +...+... . +++.+.|+|++.+++++.. |+.+++||+..+..+..+.+|... +.+
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~------d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL------DRTLKLWDLRSGKSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC------CCeEEEEEccCCcceeeecccCCcceeEec
Confidence 99999999998 45555432 2 5899999999999999865 999999999999999999988764 445
Q ss_pred EeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc-CCceeeeeeccC
Q 040533 316 LSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH-LDGLLSLKVSPI 363 (364)
Q Consensus 316 i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~v~~~~~sp~ 363 (364)
...++.+.++++|+.|+.|++|++.++..+..+.+| ...+..+.++|.
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 566789999999999999999999999999999999 888999998874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=235.24 Aligned_cols=262 Identities=16% Similarity=0.238 Sum_probs=227.6
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
.++.+...|+ ..+|++....|++||+.++...++.++.+|...|+++.|..+|+++++|++||+++|||++...+.+.+
T Consensus 42 qVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~ 121 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY 121 (311)
T ss_pred ceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc
Confidence 4888888886 478888899999999999998889999999999999999999999999999999999999997776666
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
+ |..+|+++..+| +...|++|..+|.|++||+................|.++...|||.+++.+...|+.++|++...
T Consensus 122 ~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 122 Q-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH 199 (311)
T ss_pred c-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence 6 789999999999 99999999999999999998776545555556678999999999999999999999999998753
Q ss_pred C---CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecC-CCeEEEEEcCCccceeee
Q 040533 206 S---SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTK-AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 206 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 280 (364)
. ...++.+++.|++.+..+.++|+++++.+++ .|.+++||+..+. +....++.+ ..+...+||.+|+||+++
T Consensus 200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s---sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS---SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred CccccceEhhheecccceEEEEEECCCCcEEEeec---CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence 2 2356778889999999999999996555544 6999999999987 444445544 579999999999999998
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
.. |+..++|++..++.+....+|.....+++..
T Consensus 277 ss------d~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 277 SS------DHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CC------CCceeecccccCceeeecCCcccccEEEEee
Confidence 54 9999999999999999999998887777653
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=249.80 Aligned_cols=263 Identities=21% Similarity=0.361 Sum_probs=235.1
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
+.+|.+.|.|+++.|..+++++|+.|++|.|||+.+|++..++.+|...|..+++++ -..++++++.|+.|+.||++..
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhh
Confidence 458999999999999999999999999999999999999999999999999999999 8899999999999999999966
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
+ +++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++... +..+.+|..+|.++.+.|.++.++. |+.|
T Consensus 226 k-vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---V~~l~GH~~~V~~V~~~~~dpqvit---~S~D 298 (460)
T KOG0285|consen 226 K-VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---VHVLSGHTNPVASVMCQPTDPQVIT---GSHD 298 (460)
T ss_pred h-hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce---EEEecCCCCcceeEEeecCCCceEE---ecCC
Confidence 5 5888899999999999999888999999999999999998654 8999999999999999998877665 3489
Q ss_pred CeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCC
Q 040533 243 GCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++|++||++.|+...++.++ ..+.+++.+|....++++. ...|+-|++..+..+..+.+|...|.+++.+.|
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-------~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD 371 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-------PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD 371 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-------CccceeccCCccchhhccccccceeeeeeeccC
Confidence 99999999999988887665 6699999999999988875 678999999999999999999999999999888
Q ss_pred CCEEEEEeCCCcEEEEEeeCCCCCccee--------ccCCceeeeeec
Q 040533 322 GLTVVSAAADETLRFWEAFGPSGSGDFV--------SHLDGLLSLKVS 361 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~--------~~~~~v~~~~~s 361 (364)
| ++++|+++|.+.+||.+++-..+... ....+|.+.+|.
T Consensus 372 ~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 372 G-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred c-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 7 88999999999999999987655442 124456666664
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=263.38 Aligned_cols=295 Identities=21% Similarity=0.409 Sum_probs=253.6
Q ss_pred ccEEEEEeCCeEEEEECCC-----------------------Cce-------e--eeeeecCCCCCceEEEEcCCCCEEE
Q 040533 56 NNILAIALGLELYLWKQEN-----------------------GEV-------Q--KLLKVTGEDDFPTSISWSQDAKTLA 103 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~-----------------------~~~-------~--~~~~~~~~~~~v~~~~~s~~~~~l~ 103 (364)
..+++++.||.+.+|.... ++. . ...-+......|++.+|++..+.||
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 4589999999999998761 110 0 0111223347899999999999999
Q ss_pred EEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC-CcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 104 VGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD-KSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 104 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
+|-.+|...+|.+..-.+++.+.-...+|..++|+. .|+.|+.|+.. |.+.+|++.+.. .+...++|...+++++++
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEs-YVlKQQgH~~~i~~l~YS 359 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSES-YVLKQQGHSDRITSLAYS 359 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccc-eeeeccccccceeeEEEC
Confidence 999999999999999999999998889999999998 89999988754 899999998766 466678999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 262 (364)
|||+++++|++||.|++||... +-++.++..|++.|+.+.|+..+. .+++.+ .||+|+.||+...+..+++..+
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~-~llssS--LDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGN-VLLSSS--LDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCC-EEEEee--cCCeEEeeeecccceeeeecCC
Confidence 9999999999999999999665 467999999999999999999985 555554 8999999999999999999876
Q ss_pred CC--eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 263 AQ--ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 263 ~~--v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.+ ..+++..|.|..+.+|.. +.-.|.+|++++|+.+..+.+|+++|.+++|+|+|..|+++|.|.+|++||+.
T Consensus 434 ~p~QfscvavD~sGelV~AG~~-----d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQ-----DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred CceeeeEEEEcCCCCEEEeecc-----ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 55 678899999999988853 34579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeccCCceeeeeeccC
Q 040533 341 GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.......-..+...+++++|+|.
T Consensus 509 ~s~~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 509 SSSGTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred ccCceeeeEeeccceeEEEEcCC
Confidence 87655554567788999999985
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=239.36 Aligned_cols=283 Identities=18% Similarity=0.340 Sum_probs=238.6
Q ss_pred CCCCCCcceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 39 APNLRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
.+.+..++ ..+.|+|++ +++++.|..|.+|+... .+.....+++|.+.|..+.|.+|++.+++++.|.+|+.||.
T Consensus 43 l~gh~geI--~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 43 LPGHKGEI--YTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred cCCCcceE--EEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 34555554 445566654 77888999999999654 34455667799999999999999999999999999999999
Q ss_pred CCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCe
Q 040533 117 ETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
++|+.++.+++|..-|+++.-+..+..++.+++.||++++||+++... ++.+ ....+++++.|..++..+.+|+-|+.
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTF-ENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhcc-ccceeEEEEEecccccceeeccccCc
Confidence 999999999999999999985544556888999999999999997764 3333 34567999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC----eEEEEEecC-----CCeEE
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG----TCIHSVDTK-----AQICG 267 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~-----~~v~~ 267 (364)
|++||++... ....+.+|.++|+.+..+|+|.+++.- +.|.++++||++-. +++..+..+ .....
T Consensus 198 ikvWd~r~~d---~~~~lsGh~DtIt~lsls~~gs~llsn---sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 198 IKVWDLRKND---GLYTLSGHADTITGLSLSRYGSFLLSN---SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred eeeeccccCc---ceEEeecccCceeeEEeccCCCccccc---cccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 9999988754 489999999999999999999766653 38999999999753 445555443 34677
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.+|+|++..+.+|.. |..+++||......+..+.+|.+.|.+++|+|...+|.+++.|.+|++=+
T Consensus 272 cswsp~~~~i~ags~------dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSA------DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeccCCCCccccccc------cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 899999999988865 99999999999999999999999999999999999999999999998743
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=256.30 Aligned_cols=276 Identities=26% Similarity=0.487 Sum_probs=238.8
Q ss_pred eeecccCCCc-c-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRN-N-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~-~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+++ . +++++.++.+.+|+..+++.. ..+..|...+..+.|+|+++++++++.+|.|++|++.+++....
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence 3778888885 3 555666999999999887643 33457888899999999999999999999999999999888888
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+..|...+.++.|+| ++.++++++.+|.+.+||+++.+. ...+..|...+.+++|+|++.++++++.++.|++||++.
T Consensus 89 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 89 LTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 888999999999999 788888888899999999986554 556668889999999999988998888899999999875
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE-ecCCCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV-DTKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
. +.+..+..|...+.++.|+|++..+++++ .++.+++||+++++.+..+ .+...+.++.|+|++.+++++.
T Consensus 167 ~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 238 (289)
T cd00200 167 G---KCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-- 238 (289)
T ss_pred c---ccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc--
Confidence 4 34666777888999999999986555543 5999999999998888888 4556899999999988887764
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.++.|++|++.+++....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 239 ----~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 239 ----EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 389999999999999999999999999999999999999999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=241.16 Aligned_cols=271 Identities=21% Similarity=0.356 Sum_probs=231.7
Q ss_pred eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC-CcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE-TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 78 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
.++..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+ +++.+++++.|.+++.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEE
Confidence 3455677999999999999999999999999999999954 3455667889999999999999 9999999999999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
||.++++. ...++.|..-|+.+.-+.-| .++.+++.|+++++||+|+... ++++. ..-+++++.|...+..++.
T Consensus 117 wD~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---~~t~~-~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 117 WDAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---IKTFE-NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred Eeccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch---hhccc-cceeEEEEEecccccceee
Confidence 99999886 77788999999998844433 4778889999999999987543 44443 3567899999998866655
Q ss_pred eecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC----Cceeeeccccc
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH----MTKWGELQHQT 310 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~~~~ 310 (364)
|+ -|+.|++||++.+.....+.++ .+|+.+..+|+|.++++-. .|..+++||++- .+++..+++|.
T Consensus 192 -gg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns------Md~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 192 -GG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS------MDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred -cc--ccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc------ccceEEEEEecccCCCCceEEEeecch
Confidence 43 8999999999999999998876 7799999999999998764 499999999864 34466666653
Q ss_pred ----cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 311 ----SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 311 ----~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.....++|+|+++.+.+|+.|..+++||......+..+.+|.+.|++++|+|.
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPT 319 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCC
Confidence 23467899999999999999999999999999999999999999999999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=245.80 Aligned_cols=277 Identities=20% Similarity=0.358 Sum_probs=242.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++..|.+ +++++.|+++.|||+.++++. .++.+|...|..+++|+-..||++++.|+.|+.||++..+.++.
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH
Confidence 47777777743 777889999999999999874 45669999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|-..|.|++.+| .-+.|++|+.|.++++||+++... +..+.+|..+|..+.+.|-...+++|+.|++|++||++.
T Consensus 231 YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a 308 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA 308 (460)
T ss_pred hccccceeEEEeccc-cceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc
Confidence 999999999999999 999999999999999999998876 778899999999999999888999999999999999887
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~ 283 (364)
+.. ...+..|...|++++.+|.. +++++++ ...|+-|++..|..+..+..+ .-+.+++.+.++-++..
T Consensus 309 gkt---~~tlt~hkksvral~lhP~e-~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G---- 377 (460)
T KOG0285|consen 309 GKT---MITLTHHKKSVRALCLHPKE-NLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSG---- 377 (460)
T ss_pred Cce---eEeeecccceeeEEecCCch-hhhhccC---CccceeccCCccchhhccccccceeeeeeeccCceEEEc----
Confidence 644 78888899999999999987 7888875 456999999999988887665 45788998888766543
Q ss_pred CccCCCCeEEEeeCCCCceeeeccc--------cccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQH--------QTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+++|.+.+||.+++...+..+. .+..|++.+|...|..|++|..|.+|++|.-..
T Consensus 378 ---~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 378 ---GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ---CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 4589999999998876655421 245689999999999999999999999998554
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=273.46 Aligned_cols=281 Identities=23% Similarity=0.439 Sum_probs=239.6
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec-CCcceeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA-ETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~-~~~~~~~~ 124 (364)
+.++++++++ +++++.++.+++|+..+.+......+.+|...|.+++|+|+++++++|+.|++|+|||+ ..+..+++
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE
Confidence 5557777753 56666899999999976662223344699999999999999999999999999999999 55688999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...|++++|+| .++++++|+.|++|++||++++. +...+.+|.+.|++++|++++++|++++.|+.|++||+.+
T Consensus 242 l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~ 319 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET 319 (456)
T ss_pred ecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC
Confidence 999999999999999 77999999999999999999855 5888999999999999999999999999999999999887
Q ss_pred CCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC----CeEEEEEcCCcccee
Q 040533 205 MSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA----QICGLEWNRHHKEIL 278 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~ 278 (364)
+... +...+..+.. +++++.|+|++.+++... .|+.+++||+..+.....+..+. .+.+...++.+.+++
T Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 320 GSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred Ccee-eeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence 6521 2344444444 599999999997666643 79999999999998888876542 345556688999999
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEEe--CCCcEEEEEee
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSAA--ADETLRFWEAF 340 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~--~dg~i~vw~~~ 340 (364)
+|.. |+.|++|++.++..+..+.+| ...+..+.++|...++++++ .|+.+++|...
T Consensus 396 sg~~------d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 396 SGSE------DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeC------CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 8854 999999999999999999999 88999999999999999998 78999999754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=263.88 Aligned_cols=267 Identities=17% Similarity=0.305 Sum_probs=246.4
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
..+.+.|.++.|+|...+++++-.+|.|.||+.++...++.+.-...+|++..|-+ ..+.+++|+.|..|++|+..+.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccce
Confidence 35789999999999999999999999999999999999999999999999999999 99999999999999999999988
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
+ +..+.+|.+.|.+++.+|...++++++.|-.|++||.+.. ..+.+++.+|...|++++|+|.+.+.+++++ .|+
T Consensus 89 k-V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s--LDr 163 (794)
T KOG0276|consen 89 K-VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASAS--LDR 163 (794)
T ss_pred e-eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeee--ccc
Confidence 6 7889999999999999999999999999999999998764 5678999999999999999999999999987 999
Q ss_pred eEEEEECCCCeEEEEEecC-CCeEEEEEcCCc--cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 244 CIKIWNVQKGTCIHSVDTK-AQICGLEWNRHH--KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
+|++|.+....+..+++.+ ..|+++.+-+.| +++++| ++|..++|||.++..++.++.+|...|..+.|+|
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg------aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG------ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec------CCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 9999999999999998865 669999998866 678877 5699999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 321 DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 321 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.-.++++||+||+++||+..+-+...++.-..+.|++++-.+
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k 279 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK 279 (794)
T ss_pred CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence 999999999999999999999888888776677888877443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=270.92 Aligned_cols=239 Identities=23% Similarity=0.394 Sum_probs=210.0
Q ss_pred eecccCCCcc-EEEE-EeCCeEEEEECCCCce-----------------------------eeeeeecCCCCCceEEEEc
Q 040533 48 SNMMDWGRNN-ILAI-ALGLELYLWKQENGEV-----------------------------QKLLKVTGEDDFPTSISWS 96 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~-~~~~~i~iw~~~~~~~-----------------------------~~~~~~~~~~~~v~~~~~s 96 (364)
++|..++++. ++|. -.|..|++|.+...+. ....++.+|.++|..+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 5777888864 4444 4688999999874221 0122356999999999999
Q ss_pred CCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE
Q 040533 97 QDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV 176 (364)
Q Consensus 97 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v 176 (364)
|+.++|+++++|+++++|.+.+...+..+++|..+|+.+.|+| .|.+||+++.|++.++|...... +.+.+.+|.+.|
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~-PlRifaghlsDV 538 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSDV 538 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCC-chhhhccccccc
Confidence 9999999999999999999999999999999999999999999 99999999999999999988655 478889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
.|+.|+|+.+++++|+.|.+|++||+.++.. ++.|.+|.++|.+++|+|+| ..+++|+ .||.|.+||+.+++.+
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~~~V~al~~Sp~G-r~LaSg~--ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---VRIFTGHKGPVTALAFSPCG-RYLASGD--EDGLIKIWDLANGSLV 612 (707)
T ss_pred ceEEECCcccccccCCCCceEEEEEcCCCcE---EEEecCCCCceEEEEEcCCC-ceEeecc--cCCcEEEEEcCCCcch
Confidence 9999999999999999999999999887654 99999999999999999999 5677766 9999999999999998
Q ss_pred EEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 257 HSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 257 ~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
..+.. .+.+.++.|+.+|..|++++. |+.|++||+...
T Consensus 613 ~~l~~Ht~ti~SlsFS~dg~vLasgg~------DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 613 KQLKGHTGTIYSLSFSRDGNVLASGGA------DNSVRLWDLTKV 651 (707)
T ss_pred hhhhcccCceeEEEEecCCCEEEecCC------CCeEEEEEchhh
Confidence 87754 477999999999999999865 999999998653
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=266.12 Aligned_cols=307 Identities=19% Similarity=0.305 Sum_probs=258.3
Q ss_pred cceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 45 DYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
+-.+.+++..|++ ++++.....+++|+++++++.+.... .|+.+|.-++|+|.+..|++|+.||.++|||+..+.+.
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa-~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKA-IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhh-ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 3346677777753 67777888999999999987655543 49999999999999999999999999999999999999
Q ss_pred eeeecCCCcEEEEEeecCCC--CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 123 RNLEGHDKRVATASWNHWNG--HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
..+++|.+.|.++.|+| +. .+|++|..|+.+++||++........+..|.+.|++++|++|+..+++++.|..+.+|
T Consensus 141 h~fkG~gGvVssl~F~~-~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHP-HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred EEecCCCceEEEEEeCC-ccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 99999999999999998 44 4689999999999999997776677788999999999999999999999999999999
Q ss_pred eCCC----------------------------------------------------------------------------
Q 040533 201 DHSK---------------------------------------------------------------------------- 204 (364)
Q Consensus 201 d~~~---------------------------------------------------------------------------- 204 (364)
|+..
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 9754
Q ss_pred ---------------------------------C-----------------------------------------CC---
Q 040533 205 ---------------------------------M-----------------------------------------SS--- 207 (364)
Q Consensus 205 ---------------------------------~-----------------------------------------~~--- 207 (364)
+ ..
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 0 00
Q ss_pred ---------------------CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE---EEE----
Q 040533 208 ---------------------SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI---HSV---- 259 (364)
Q Consensus 208 ---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~---- 259 (364)
..++....+|...|.+++++..+..++++++ .|+++++|++...+.. ..+
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS--~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS--QDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec--CCceEEEecCCCcccccccceehhhH
Confidence 0001112346666777777777777788876 9999999999772221 111
Q ss_pred ---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 260 ---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 260 ---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
.|+..|++++++|+.+++++|+ .|.+.+||+++..+....+.+|...|.++.|+|..+.++|+|.|++|+|
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~S------qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGS------QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred HHHhhcccccceEecCCCceEEecc------cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence 2557899999999999999885 4999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCcceeccCCceeeeeec
Q 040533 337 WEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 337 w~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
|.+.+...+++|.||...|..++|-
T Consensus 532 W~is~fSClkT~eGH~~aVlra~F~ 556 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSAVLRASFI 556 (775)
T ss_pred EEeccceeeeeecCccceeEeeeee
Confidence 9999999999999999999988873
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=253.33 Aligned_cols=268 Identities=28% Similarity=0.521 Sum_probs=237.5
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
.+.+|.++|++++|+|++++|++++.+|.|.+|++.+++....+..|...+..+.|+| +++++++++.+|.|++||+..
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCc
Confidence 3458999999999999999999999999999999999888888888999999999999 889999999999999999987
Q ss_pred CcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
.+. ...+..|...+.++.|+++++++++++.++.+.+||+++. +....+..|...+.+++|+|++ .++++++ .
T Consensus 83 ~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~ 155 (289)
T cd00200 83 GEC-VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSPDG-TFVASSS--Q 155 (289)
T ss_pred ccc-eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---EEEEEeccCCCcEEEEEEcCcC-CEEEEEc--C
Confidence 553 5667788889999999999888988888999999998753 4466777788899999999986 5666654 6
Q ss_pred CCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 242 DGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
++.|++||+++++.+..+..+ ..+.++.|+|+++.++++.. ++.|++||+.+++.+..+..|...+.++.|+|
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC------CCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 999999999988888877655 48999999999988888754 99999999999999999988999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 321 DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 321 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.++++++.||.|++|++.+++....+..|...|.+++|+|.
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence 9989998888999999999988888888889999999999984
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=241.18 Aligned_cols=274 Identities=19% Similarity=0.336 Sum_probs=227.3
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
+..+..|.+.|.+++.+|+.+++|+|+.|..-.+|++.++.....+.+|+..|+++.|+. ++.+||+|+-+|.|+||+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEc
Confidence 345669999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
.++... ..+...-..+.-+.|+|.+..|+.|+.||.+.+|.+.+. ...+.+.+|+.++++-.|.|+|+.++. +
T Consensus 136 stg~~~-~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr~~t-g-- 208 (399)
T KOG0296|consen 136 STGGEQ-WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKRILT-G-- 208 (399)
T ss_pred ccCceE-EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc---ceeeEecCCCCCcccccccCCCceEEE-E--
Confidence 988753 334345577889999999999999999999999998774 347888999999999999999966555 3
Q ss_pred CCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeec------------------------------------
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGH------------------------------------ 281 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~------------------------------------ 281 (364)
+.||+|++||+.+++++..+.. +.+..++.++..+..++.|.
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 3899999999999998877751 11122222221111111110
Q ss_pred -----------cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 282 -----------GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 282 -----------~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
..+.++-||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.++++.+..+.+
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 01234669999999998877766664 778899999988 67999999999999999999999999999
Q ss_pred cCCceeeeeeccC
Q 040533 351 HLDGLLSLKVSPI 363 (364)
Q Consensus 351 ~~~~v~~~~~sp~ 363 (364)
|..+|.+++.+|.
T Consensus 367 H~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 367 HQMGILDFALSPQ 379 (399)
T ss_pred CchheeEEEEcCC
Confidence 9999999999985
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=260.77 Aligned_cols=295 Identities=22% Similarity=0.380 Sum_probs=256.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEE-cCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISW-SQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT 134 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 134 (364)
..++++..+..+.++|.++.+... .+-|..+.|.+++| .|+.++||+++..+.+++|++.+..+. .+.+|...|.+
T Consensus 294 ~~~l~vtaeQnl~l~d~~~l~i~k--~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlS 370 (775)
T KOG0319|consen 294 SQLLLVTAEQNLFLYDEDELTIVK--QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLS 370 (775)
T ss_pred CceEEEEccceEEEEEccccEEeh--hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheee
Confidence 568899999999999998887643 34488899999997 467789999999999999998877765 78999999999
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcc
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~ 210 (364)
++... ++.+|++|+.|.++++|.++.+. .+.....+|...|.+++++..+ .+|++++.|+++++|++...+....
T Consensus 371 L~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 371 LDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred eeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 99444 67899999999999999884432 2345667899999999997744 5899999999999999987322221
Q ss_pred --eE----EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccC
Q 040533 211 --LH----RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 211 --~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.. ....|...|++++.+|+. .++++|+ +|.+.++|++.......++.++ ..+.++.|+|..+.++++++
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg- 525 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPND-KLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG- 525 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCC-ceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccC-
Confidence 22 234689999999999987 7999987 9999999999999999999876 56999999999999998865
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|.+|+||.+.+..++.++.+|...|..+.|-.+|..|++++.||.|++|++++.+.+.++..|.+.|++++-+|.
T Consensus 526 -----D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 526 -----DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL 600 (775)
T ss_pred -----CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=226.90 Aligned_cols=270 Identities=20% Similarity=0.397 Sum_probs=225.9
Q ss_pred eeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCc---ceeeee-ecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 78 QKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETS---KLIRNL-EGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 78 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
.....+++|.+.+..++|+|- |..||+|+.|..|+||+...+ .+...+ .+|+..|++++|+| .+++|++++.|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccc
Confidence 345667799999999999997 889999999999999998853 233233 36999999999999 999999999999
Q ss_pred cEEEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC
Q 040533 153 SIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 153 ~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
++.||.-..+. ..+..+.+|...|.+++|+++|++||+++.|+.|-||.+.......+...+++|...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~- 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE- 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-
Confidence 99999865443 4577889999999999999999999999999999999999877888899999999999999999976
Q ss_pred cEEEeecCCCCCeEEEEECC---CCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 232 NVLASGGGTQDGCIKIWNVQ---KGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~---~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
.+|++++ .|++|++|+-. ...+.+++..+ ..|.+++|++.|..|+++ ++|++++||...+.- -.
T Consensus 163 dlL~S~S--YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~------sdD~tv~Iw~~~~~~----~~ 230 (312)
T KOG0645|consen 163 DLLFSCS--YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC------SDDGTVSIWRLYTDL----SG 230 (312)
T ss_pred ceeEEec--cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe------cCCcceEeeeeccCc----ch
Confidence 6888876 99999999876 34678888765 589999999999988887 459999999865211 12
Q ss_pred ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc-------ceeccCCceeeeeeccC
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG-------DFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-------~~~~~~~~v~~~~~sp~ 363 (364)
.|...++.+.|. ...|++++.|+.|++|.-....... .-..|...|++++|.|.
T Consensus 231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC
Confidence 367889999998 4489999999999999877542211 22368889999999993
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=246.55 Aligned_cols=267 Identities=17% Similarity=0.214 Sum_probs=231.8
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc---ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
+..|.+.|.-+.||++|++||+++.|.+..||++... +..+++.+|..+|..+.|+| +.++|++++.+..+.+||+
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccC
Confidence 4589999999999999999999999999999997654 34678889999999999999 9999999999999999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc-ccceeEEEEccCCCcEEEeec
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH-RAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ 238 (364)
.++......-.++...+.+++|.|||..+++|+.|+.+..||+.... +...++. ...|.+++..+||+++++.+
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~- 373 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLVT- 373 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEEe-
Confidence 99986555545566889999999999999999999999999987432 3344433 24689999999999988887
Q ss_pred CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc--eeEE
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR--ILEL 316 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--i~~i 316 (364)
.|..|++++..+......+..+.++++++.|.+++++++.-. +..+.+||+...+.+..+.+|... +..-
T Consensus 374 --~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~------~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 374 --VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ------DQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred --cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc------cCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 599999999988877777788899999999999999998754 999999999999999999998754 3333
Q ss_pred eecC-CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 317 SQSP-DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 317 ~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+|-- +..++++||+|+.|+||+..+++++..+.||...|++|+|+|.
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 4543 4479999999999999999999999999999999999999995
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=227.81 Aligned_cols=265 Identities=22% Similarity=0.386 Sum_probs=220.6
Q ss_pred eCCeEEEEECCCCc-eeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEEEeec
Q 040533 63 LGLELYLWKQENGE-VQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 63 ~~~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~ 139 (364)
..|.+.|.++...+ ......+ .-.+.+..++|+++ .+.+++++.||+++|||+.. ..++..++.|...|.++.|++
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNT 114 (311)
T ss_pred cCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccc
Confidence 36899999996443 3333333 55788999999995 46788888999999999643 367788999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccc
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR 218 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 218 (364)
..++.+++++.|++|++|+...++. +.++.+|...|....|+| ..+++++++.|+.+++||++... +.+. +..|.
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--k~~~-i~ah~ 190 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--KFMS-IEAHN 190 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--ceeE-EEecc
Confidence 8889999999999999999986665 777999999999999999 67899999999999999998763 3333 77899
Q ss_pred cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 219 AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 219 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
..+.++.|+....+++++|+ .|+.|+.||+++- .++..+..+ -.|..+.|||...-+++.. +-|-+++|||
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa-----sYDmT~riw~ 263 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA-----SYDMTVRIWD 263 (311)
T ss_pred ceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc-----cccceEEecc
Confidence 99999999999999999987 9999999999984 445555443 5699999999877666543 4499999999
Q ss_pred CCC-CceeeeccccccceeEEeecC-CCCEEEEEeCCCcEEEEEe
Q 040533 297 YPH-MTKWGELQHQTSRILELSQSP-DGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 297 ~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~vw~~ 339 (364)
... ...+.+...|..-+..+.||+ ++.++|+++.|+.++||+.
T Consensus 264 ~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 974 445666778899999999998 5679999999999999984
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=233.99 Aligned_cols=280 Identities=18% Similarity=0.315 Sum_probs=249.2
Q ss_pred eecccCCC---cc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 48 SNMMDWGR---NN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 48 ~~~~~~~~---~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
+..++|+| ++ +++++.|+.-.+-+-++|..+..+ .+|.+.|.+.+++.+....|+++.|-+-+|||.-+|..+
T Consensus 17 vvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf--eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF--EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred eeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee--eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 55667766 33 677788999888888999886555 499999999999999989999999999999999999999
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
..+. |..-|.+++|+. +.++|++|+.+..+++||++..+.+...+.+|.+.|..+.|....+.++++..|++|++||.
T Consensus 95 hsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 95 HSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 9987 889999999999 99999999999999999999888778889999999999999998889999999999999999
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeecc
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
+++.. ++.+. .+.+|+++..+++|. ++.++ ..+.|.+||..+...++.++.+..|.+...+|+...+++|
T Consensus 173 rTgt~---v~sL~-~~s~VtSlEvs~dG~-ilTia---~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaG-- 242 (334)
T KOG0278|consen 173 RTGTE---VQSLE-FNSPVTSLEVSQDGR-ILTIA---YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAG-- 242 (334)
T ss_pred ccCcE---EEEEe-cCCCCcceeeccCCC-EEEEe---cCceeEEeccccccceeeccCccccccccccCCCceEEec--
Confidence 88654 66654 467899999999995 55544 4688999999999999999999999999999999888887
Q ss_pred CCccCCCCeEEEeeCCCCceeeec-cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGEL-QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
++|..++.||..+++.+..+ ++|.++|.++.|+|+|...++||.||+|++|.+..++..
T Consensus 243 ----ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 243 ----GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ----CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 45999999999999999986 899999999999999999999999999999998877654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=249.86 Aligned_cols=276 Identities=18% Similarity=0.323 Sum_probs=232.6
Q ss_pred eecccCCCc--c-EEEEEeCCeEEEEECCC-CceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 48 SNMMDWGRN--N-ILAIALGLELYLWKQEN-GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~--~-~~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
++++.|.|. . +++++.|+.|+||++-. +++ +.++.+|..+|.+++|+++|..+++++.|+.|++||+++|+++.
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~--lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~ 294 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC--LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS 294 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcce--ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE
Confidence 788899883 2 66778899999999877 444 45566999999999999999999999999999999999999999
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+. ....++|+.|+|++.+.+++|+.|+.|+.||+++++ ++..+..|-+.|..+.|-++|+++++.++|++++||+.+
T Consensus 295 ~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 295 RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcC
Confidence 988 567889999999555999999999999999999887 577788899999999999999999999999999999988
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEEec---CCCeEEEEEcCCccce
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSVDT---KAQICGLEWNRHHKEI 277 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~---~~~v~~~~~~~~~~~l 277 (364)
.+...+.+.... .....++..+|+++.+++ - +.|+.|.++.+...-. ...++. .+.-..+.|||+|.+|
T Consensus 373 ~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~a-Q--s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l 447 (503)
T KOG0282|consen 373 IPVPIKNIADPE--MHTMPCLTLHPNGKWFAA-Q--SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTL 447 (503)
T ss_pred CCccchhhcchh--hccCcceecCCCCCeehh-h--ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeE
Confidence 765433333332 334568899999965554 3 3899999998754221 122222 3567889999999999
Q ss_pred eeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEEEEeCCCcEEEEE
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLRFWE 338 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~ 338 (364)
++|.+ +|.+.+||.++-+.+..++.|.+++..+.|+|.. ..+|+++.||.|++|+
T Consensus 448 ~SGds------dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 448 CSGDS------DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeecC------CccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99976 9999999999999999999999999999999965 5799999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=246.31 Aligned_cols=271 Identities=19% Similarity=0.436 Sum_probs=231.7
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.++.+..+.++++..|++|+|||.++..+... +.||.+.|.|+.| +.+.+++|+.|.+|+|||.++++++.++-.
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 567778888899999999999999988877544 4499999999999 456999999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
|.+.|..+.| ++.++++++.|.++.+||+.... .+...+.+|...|+.+.|+ .+++++++.|.+|++|++.+.
T Consensus 276 HceaVLhlrf---~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 276 HCEAVLHLRF---SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred hcceeEEEEE---eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 9999999999 67899999999999999998664 2345678999999999996 459999999999999997765
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC-eEEEEEcCCccceeeeccCC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~ 284 (364)
..+.++.+|...|-|+.+.. .++++|+ .|.+|++||+..|.+++.++++.. |.++.|. .+.+++|.-
T Consensus 351 ---efvRtl~gHkRGIAClQYr~---rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaY-- 418 (499)
T KOG0281|consen 351 ---EFVRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAY-- 418 (499)
T ss_pred ---eeehhhhcccccceehhccC---eEEEecC--CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccc--
Confidence 55899999999998888753 6888866 999999999999999999987754 8888885 456676643
Q ss_pred ccCCCCeEEEeeCCCCce---------eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 285 SSGDGQKLCLWKYPHMTK---------WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~---------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
||.|++||+..+.. +..+..|.+.|..+.| |...+++++.|.+|-|||+..+..-
T Consensus 419 ----DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 419 ----DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ----cceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 99999999976543 3445578899999999 6678999999999999999877654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=254.24 Aligned_cols=269 Identities=19% Similarity=0.322 Sum_probs=233.0
Q ss_pred eeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEE
Q 040533 80 LLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINH 157 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 157 (364)
+..+.+|...|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|++ .+..+++++.|+.+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLW 285 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeee
Confidence 456779999999999999 889999999999999999876 899999999999999999999 99999999999999999
Q ss_pred EcccCcceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 158 DVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 158 d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
|+++++.. ..+ .....++|+.|+|++ +.+++|+.|+.|+.||+|.++ .++.+..|-+.|..+.|-+++..++.+
T Consensus 286 DtETG~~~-~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 286 DTETGQVL-SRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred ccccceEE-EEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999863 333 234567999999988 899999999999999998864 588888899999999999999776665
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC---ceeeeccccc-
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM---TKWGELQHQT- 310 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~---~~~~~~~~~~- 310 (364)
. .|++++||+.+..-.+..+... ....++..+|+++++++-+. |+.|.+|.+... .....+++|.
T Consensus 361 S---Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~------dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 361 S---DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM------DNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred c---cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc------CceEEEEecccccccCHhhhhcceec
Confidence 4 7999999999988776554332 45778999999999988744 999999987543 2334566775
Q ss_pred -cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 311 -SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 311 -~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+.-..+.|||||++|++|+.||.+.+||.++.+.+..+..|..++..+.|+|.
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 45678899999999999999999999999999999999999999999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=243.70 Aligned_cols=254 Identities=19% Similarity=0.375 Sum_probs=221.5
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
....|+|+.+ |...+++|..|.+|+|||..+..+.+.+.+|.+.|.|+.| +.+.+++|+.|.+|++||+++++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge~- 269 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGEP- 269 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCch-
Confidence 3567999998 5567999999999999999999999999999999999999 778999999999999999999886
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
+..+-.|...|..+.|+. .++++++.|.++.+||+..+......+.+.+|...|+.+.|+. .++++++ .|.+|
T Consensus 270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsAS--gDRTi 342 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSAS--GDRTI 342 (499)
T ss_pred hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEec--CCceE
Confidence 666778999999999974 4999999999999999988776666777889999999999975 3666665 69999
Q ss_pred EEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE
Q 040533 246 KIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT 324 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 324 (364)
++|++.+++.++++..+ ..|.++.+ .++++++|+. |++|++||+..|.++..+++|+.-|.++.| |.+.
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS------DntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~kr 412 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 412 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCC------CceEEEEeccccHHHHHHhchHHhhhheee--cCce
Confidence 99999999999998765 45777665 5788888754 999999999999999999999999999999 6678
Q ss_pred EEEEeCCCcEEEEEeeCCCCC---------cceeccCCceeeeeecc
Q 040533 325 VVSAAADETLRFWEAFGPSGS---------GDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 325 l~~~~~dg~i~vw~~~~~~~~---------~~~~~~~~~v~~~~~sp 362 (364)
+++|+.||+|+|||+..+... ..+..|.+.|..+.|..
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 999999999999999887654 24456888898888853
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=250.59 Aligned_cols=276 Identities=15% Similarity=0.247 Sum_probs=246.9
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++++|.. ++++-.+|.|.|||.++....+.++. ...+|.+..|-+..+++++|+.|..|+||+..+++.+..
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEecccceeeEE
Confidence 37888899853 77888899999999999988766664 477899999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 203 (364)
+.+|..-|++++.+| ...++++++.|-+|++||.+..-...+.+.+|...|.+++|+| |.+.+++++-|++|++|.+.
T Consensus 93 FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg 171 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG 171 (794)
T ss_pred eeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC
Confidence 999999999999999 8999999999999999999988888899999999999999999 77899999999999999976
Q ss_pred CCCCCcceEEecccccceeEEEEccCC-CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeec
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQ-FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 281 (364)
.. .+..++.+|...|+++.+-+.| +-.+++|+ .|.++++||.++..++++++++ ..|..+.|+|.-..+++|
T Consensus 172 s~---~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg- 245 (794)
T KOG0276|consen 172 SP---HPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG- 245 (794)
T ss_pred CC---CCceeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe-
Confidence 54 5588999999999999998755 23566655 8999999999999999999866 679999999999999988
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
++||+++||+..+.+...++.-....+.+++-.+.++.++.|..+|.|.+
T Consensus 246 -----sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 246 -----SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -----cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 55999999999999998888888889999999998888888887777643
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=237.89 Aligned_cols=299 Identities=16% Similarity=0.281 Sum_probs=243.7
Q ss_pred eecccCCCccEEEEEe--CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--CcEEEEecCCcceee
Q 040533 48 SNMMDWGRNNILAIAL--GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--SKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~ 123 (364)
++...++|.+...++. .|.|+|||....+.....+++.-.++|..++|++|++++++.++. ...+++-.++|..+.
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG 141 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG 141 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc
Confidence 5666778876555544 489999998876665556666778999999999999998887643 223344445788889
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+.+|...|++++|-|...-.+++|+.|++|.+|+-... ++...+..|..-|.++.|+|||+++++++.||++.+||
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD-- 218 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD-- 218 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-eeeecccccccceeeEEECCCCCeEEEecCCccEEEEc--
Confidence 999999999999999977789999999999999985422 34556778999999999999999999999999999999
Q ss_pred CCCCCcceEEec---ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC----eEEEEEcCCccc
Q 040533 204 KMSSSKCLHRFR---DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ----ICGLEWNRHHKE 276 (364)
Q Consensus 204 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----v~~~~~~~~~~~ 276 (364)
+..++.+..+. +|.+.|.+++|+||+..++.++ .|.+++|||..+.++++++..... ...+.|- +..
T Consensus 219 -Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~ 292 (603)
T KOG0318|consen 219 -GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDH 292 (603)
T ss_pred -CCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCe
Confidence 44455577776 8999999999999997776655 599999999999999999876543 3445554 344
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-eccCCce
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF-VSHLDGL 355 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v 355 (364)
|++... +|.|.+++...+.++..+.+|...|+++..+|++.+|++|+.||.|.-|+..++..-+.. .+|...|
T Consensus 293 lItVSl------~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 293 LITVSL------SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEEEEc------CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 444433 999999999999999999999999999999999999999999999999999988765443 5688888
Q ss_pred eeeeec
Q 040533 356 LSLKVS 361 (364)
Q Consensus 356 ~~~~~s 361 (364)
.+++-+
T Consensus 367 ~~~~~~ 372 (603)
T KOG0318|consen 367 KGMAAS 372 (603)
T ss_pred EEEeec
Confidence 877654
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=239.33 Aligned_cols=301 Identities=17% Similarity=0.229 Sum_probs=236.8
Q ss_pred CCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCCEE
Q 040533 24 SPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAKTL 102 (364)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l 102 (364)
.....+|.+..+++. .+.+++....++-++..+++++.|.+..+|++... +.....++.+|..+|..+.||||.++|
T Consensus 207 c~~~qip~qt~qil~--~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryL 284 (519)
T KOG0293|consen 207 CGRLQIPSQTWQILQ--DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYL 284 (519)
T ss_pred cCcccCCchhhhhHh--hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeE
Confidence 344556666666665 34455444444433345777888999999997543 344456677999999999999999999
Q ss_pred EEEecCCcEEEEecCCcceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cCcEEEEE
Q 040533 103 AVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TAEVCGLK 180 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~v~~~~ 180 (364)
++++.+..+.+||+.+|.....+.. +...+.+++|.| ++..+++|+.|+++..||++... .....+- ...|.+++
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLA 361 (519)
T ss_pred EecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEE
Confidence 9999999999999999998877763 457899999999 99999999999999999997443 3333332 25689999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
.++||+++++.+.|..|++++...... .. +.....+|++++.+.++++.++.- .+..+++||++..+.++.+.
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~d---r~-lise~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVD---RG-LISEEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhh---hc-cccccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhhHHHHhh
Confidence 999999999999999999999765432 11 223467899999999997777754 69999999999888887776
Q ss_pred cCCC---eEEEEEcCCc-cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEEEEeCCCcEE
Q 040533 261 TKAQ---ICGLEWNRHH-KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLR 335 (364)
Q Consensus 261 ~~~~---v~~~~~~~~~-~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~ 335 (364)
++.. +..-+|--.. .++++| ++|+.|+||+..+++++.++.+|...|.+++|+|.. .++|+||.||+|+
T Consensus 435 Ghkq~~fiIrSCFgg~~~~fiaSG------SED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 435 GHKQGHFIIRSCFGGGNDKFIASG------SEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred cccccceEEEeccCCCCcceEEec------CCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEE
Confidence 5532 4444555444 566665 669999999999999999999999999999999955 5789999999999
Q ss_pred EEEeeCC
Q 040533 336 FWEAFGP 342 (364)
Q Consensus 336 vw~~~~~ 342 (364)
||.....
T Consensus 509 IWg~~~~ 515 (519)
T KOG0293|consen 509 IWGPSDN 515 (519)
T ss_pred EecCCcc
Confidence 9987654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=270.76 Aligned_cols=280 Identities=17% Similarity=0.273 Sum_probs=224.5
Q ss_pred cceeecccCCCcc--EEEEEeCCeEEEEECCCCc----e--eeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEe
Q 040533 45 DYYSNMMDWGRNN--ILAIALGLELYLWKQENGE----V--QKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~----~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 115 (364)
.-.+.+++|++++ +++++.|+.|+||+..... . .....+ .+...+.+++|+| ++.+|++++.||.|++||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 3347888998854 6677889999999975421 1 112223 3356799999987 478999999999999999
Q ss_pred cCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc-CCCCEEEEEeCC
Q 040533 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS-NEGNLLASGGDD 194 (364)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 194 (364)
+.+++.+..+.+|...|++++|+|.++.+|++|+.||.|++||++++.. ...+.. ...+.++.|+ +++.+|++|+.|
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~-~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKT-KANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEec-CCCeEEEEEeCCCCCEEEEEeCC
Confidence 9999999999999999999999976789999999999999999987664 444443 4679999995 478999999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC------eEEEEEecC-CCeEE
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG------TCIHSVDTK-AQICG 267 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------~~~~~~~~~-~~v~~ 267 (364)
|.|++||++... ..+..+.+|...|.++.|. ++ ..+++++ .|++|++||++.+ .++..+..+ ..+..
T Consensus 640 g~I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 640 HKVYYYDLRNPK--LPLCTMIGHSKTVSYVRFV-DS-STLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred CeEEEEECCCCC--ccceEecCCCCCEEEEEEe-CC-CEEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 999999987643 2356677899999999997 44 4566665 7999999999743 456666544 56889
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec-------------cccccceeEEeecCCCCEEEEEeCCCcE
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL-------------QHQTSRILELSQSPDGLTVVSAAADETL 334 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-------------~~~~~~i~~i~~~~~~~~l~~~~~dg~i 334 (364)
+.|+|++.++++|.. |+.|++|+.....++..+ ..+...|.+++|+|++..|++|+.||.|
T Consensus 714 v~~s~~~~~lasgs~------D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 714 VGLSVSDGYIATGSE------TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred EEEcCCCCEEEEEeC------CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 999999999998854 999999998765443221 2345679999999999999999999999
Q ss_pred EEEEe
Q 040533 335 RFWEA 339 (364)
Q Consensus 335 ~vw~~ 339 (364)
+||++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 99986
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=270.30 Aligned_cols=285 Identities=14% Similarity=0.191 Sum_probs=225.6
Q ss_pred CCeEEEEECCCCceeeee---eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc----c----eeeeeecCCCcE
Q 040533 64 GLELYLWKQENGEVQKLL---KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----K----LIRNLEGHDKRV 132 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~----~~~~~~~~~~~v 132 (364)
+|.+++|+....+..... .+..|.+.|.+++|+|++++||+|+.|+.|+||++... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 567788887765543332 23368999999999999999999999999999997542 1 122233 45679
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcce
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 211 (364)
.+++|+|..+.+|++++.||+|++||+.+++ ....+.+|...|++++|+| ++.+|++|+.|+.|++||++... .+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~---~~ 611 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV---SI 611 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---EE
Confidence 9999998668899999999999999998765 4667789999999999997 78899999999999999987643 35
Q ss_pred EEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 212 HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 212 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
..+.. ...+.++.|++....++++|+ .|+.|++||+++.+ .+..+. +...|..+.|. ++.+++++.. |
T Consensus 612 ~~~~~-~~~v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~------D 681 (793)
T PLN00181 612 GTIKT-KANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST------D 681 (793)
T ss_pred EEEec-CCCeEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC------C
Confidence 55554 367899999765557788876 89999999998765 344444 44679999997 5677777644 9
Q ss_pred CeEEEeeCCC------CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcc-------------eec
Q 040533 290 QKLCLWKYPH------MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD-------------FVS 350 (364)
Q Consensus 290 ~~i~i~d~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~-------------~~~ 350 (364)
+.|++||+.. ..++..+.+|...+..++|+|++.+|++|+.||.|++|+......... ...
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 9999999974 356788899999999999999999999999999999999765543211 123
Q ss_pred cCCceeeeeeccC
Q 040533 351 HLDGLLSLKVSPI 363 (364)
Q Consensus 351 ~~~~v~~~~~sp~ 363 (364)
+...|.+++|+|.
T Consensus 762 ~~~~V~~v~ws~~ 774 (793)
T PLN00181 762 ASQFISSVCWRGQ 774 (793)
T ss_pred CCcEEEEEEEcCC
Confidence 4567999999984
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=231.40 Aligned_cols=265 Identities=21% Similarity=0.354 Sum_probs=228.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~ 162 (364)
-|.+.|.++... ++.+++|++||.+++||. .|+....+.+|.++|.+++|.-.+ ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 688899988887 689999999999999996 588899999999999999885412 236999999999999998876
Q ss_pred cce---eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------------------CCCcceEEeccc
Q 040533 163 NNV---TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM----------------------SSSKCLHRFRDH 217 (364)
Q Consensus 163 ~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------------------~~~~~~~~~~~~ 217 (364)
... .....+|...|-+++..++|..+++|+.|.+|.+|+.... ....++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 532 2344589999999999999999999999999999993221 113457778899
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
..+|.++.|++. ..+.+++ .|.+|+.||+.++..+..+.....+.++..+|...+|++|.. |..+++||.
T Consensus 260 t~~Vs~V~w~d~--~v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss------dr~irl~DP 329 (423)
T KOG0313|consen 260 TEPVSSVVWSDA--TVIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS------DRHIRLWDP 329 (423)
T ss_pred ccceeeEEEcCC--CceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC------CCceeecCC
Confidence 999999999984 4666665 999999999999999999999999999999999999999855 999999999
Q ss_pred CCCc---eeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCC-CCcceeccCCceeeeeecc
Q 040533 298 PHMT---KWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPS-GSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 298 ~~~~---~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~v~~~~~sp 362 (364)
+++. ...++.+|.+.|.++.|+|... +|++|+.||++++||+++.+ .+..+.+|.+.|.++.|+-
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~ 399 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE 399 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC
Confidence 8753 3457889999999999999654 68999999999999999988 8889999999999999974
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=220.62 Aligned_cols=268 Identities=18% Similarity=0.332 Sum_probs=229.5
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
..+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+... ...+|.+.|-.++|+|...+.|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3455889999999999999999999999999999998775544 34679999999999998999999999999999999
Q ss_pred cccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
++.+++... .....+. .-+.|+|+|++++.++.|..|.+.|.++... ... ......+..++|+.++..++++.|
T Consensus 94 ~r~~k~~~~-i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~---~~~-~~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGKCTAR-IETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKI---VNE-EQFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred eccCcEEEE-eeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccce---eeh-hcccceeeeeeecCCCCEEEEecC
Confidence 998886443 3333333 4578999999999999999999999887432 222 224556788999877766777664
Q ss_pred CCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEe
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 317 (364)
.|+|.|.....-+++.+++.+ ....++.|+|+|+++++|.. |-.+.+||+...-+++.+..+.-+|+.+.
T Consensus 168 ---lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA------DAlvSLWD~~ELiC~R~isRldwpVRTlS 238 (313)
T KOG1407|consen 168 ---LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA------DALVSLWDVDELICERCISRLDWPVRTLS 238 (313)
T ss_pred ---CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc------cceeeccChhHhhhheeeccccCceEEEE
Confidence 799999999999999988755 67899999999999999965 99999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccCC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPIR 364 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~~ 364 (364)
||-||++||+||+|..|-|=+++++..+..+. +.++...|+|+|.|
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR 284 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC
Confidence 99999999999999999999999999988765 68899999999986
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=220.04 Aligned_cols=264 Identities=17% Similarity=0.201 Sum_probs=222.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVS 162 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~ 162 (364)
.....|.++.|+++|..|++++.|..++|||..+++.++++..+.-.+..++|.. ..+.++.++. |.+|+..++.+.
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecC
Confidence 3477899999999999999999999999999999999999998888899999987 5556666655 889999999876
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
+ .++.+.+|...|++++.+|-+..+++++.|++|++||++..+. ...+. ...-..++|+|+| .++|++. ..
T Consensus 91 k-ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c---qg~l~--~~~~pi~AfDp~G-LifA~~~--~~ 161 (311)
T KOG1446|consen 91 K-YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC---QGLLN--LSGRPIAAFDPEG-LIFALAN--GS 161 (311)
T ss_pred c-eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC---ceEEe--cCCCcceeECCCC-cEEEEec--CC
Confidence 6 5889999999999999999889999999999999999986433 33332 2223458899998 6777765 34
Q ss_pred CeEEEEECCCC--eEEEEEec----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce---
Q 040533 243 GCIKIWNVQKG--TCIHSVDT----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI--- 313 (364)
Q Consensus 243 ~~i~i~d~~~~--~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--- 313 (364)
..|++||++.- .+..++.. ..+.+.+.|+|+|++++.+.. .+.+++.|.-+|..+..+..+...-
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~------~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN------ASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC------CCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 49999999873 34444432 367899999999999998865 8999999999999988887765432
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec-cCCceeeeeeccCC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS-HLDGLLSLKVSPIR 364 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~sp~~ 364 (364)
....|+||++++++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|.+
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence 5788999999999999999999999999999999988 68999999999974
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=224.56 Aligned_cols=267 Identities=19% Similarity=0.328 Sum_probs=241.3
Q ss_pred eeecCCCCCceEEEEcC---CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEE
Q 040533 81 LKVTGEDDFPTSISWSQ---DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINH 157 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 157 (364)
+...+|..+|..++||| +|-+|++++.||.-.+-+-++|..+.++.+|.+.|++...+. +....++++.|-+-++|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhh
Confidence 44569999999999996 888999999999999999999999999999999999999987 78888999999999999
Q ss_pred EcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 158 DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 158 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
|.-++..+ ..+ .|..-|.+++|+.|.++|++|+.+..+++||++..+. +...+.+|.+.|..+.|+.....+|.+
T Consensus 87 ~a~tgdel-hsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v~wc~eD~~iLSS- 161 (334)
T KOG0278|consen 87 DAVTGDEL-HSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTVLWCHEDKCILSS- 161 (334)
T ss_pred hhhhhhhh-hhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--CchhhcCCCCcceeEEEeccCceEEee-
Confidence 99888753 333 6888999999999999999999999999999987653 466778999999999999888666665
Q ss_pred cCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEe
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 317 (364)
. .|++||+||.++++.++++....+|+++.++++|+++.++. .+.|.+||..+..+++.++.. ..|.+..
T Consensus 162 a--dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-------gssV~Fwdaksf~~lKs~k~P-~nV~SAS 231 (334)
T KOG0278|consen 162 A--DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-------GSSVKFWDAKSFGLLKSYKMP-CNVESAS 231 (334)
T ss_pred c--cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-------CceeEEeccccccceeeccCc-ccccccc
Confidence 3 79999999999999999999999999999999999998876 789999999999999887654 4588999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-eccCCceeeeeeccC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDF-VSHLDGLLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~sp~ 363 (364)
.+|+..++++|++|+.++.||+.+++.+..+ ++|.++|.||.|||.
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence 9999999999999999999999999999886 799999999999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=253.92 Aligned_cols=265 Identities=17% Similarity=0.327 Sum_probs=233.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
.....|..++|+|...+++++-.+|.|++||.+-+.++..|..|.++|..++|+| ...++++|+.|..|++|+..+.++
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEeccccee
Confidence 4567899999999999999999999999999999999999999999999999999 999999999999999999997775
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
+.++.+|-+.|..+.|++.-.++++++.|.+|+||+..+ .+++..+.+|+..|.|..|+|.. .++++++ .|.+
T Consensus 86 -lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs---r~~iavltGHnHYVMcAqFhptE-DlIVSaS--LDQT 158 (1202)
T KOG0292|consen 86 -LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS---RKCIAVLTGHNHYVMCAQFHPTE-DLIVSAS--LDQT 158 (1202)
T ss_pred -hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC---CceEEEEecCceEEEeeccCCcc-ceEEEec--ccce
Confidence 778889999999999999999999999999999999655 56799999999999999999976 6788876 9999
Q ss_pred EEEEECCCCe-----------------------------EEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 245 IKIWNVQKGT-----------------------------CIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 245 i~i~d~~~~~-----------------------------~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
|++||+..-+ ..+.++++ ..|+-++|+|.-..+++| ++|..|++
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG------~DDRqVKl 232 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG------ADDRQVKL 232 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec------CCcceeeE
Confidence 9999985311 01122223 458889999999999988 56999999
Q ss_pred eeCCCCce--eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 295 WKYPHMTK--WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 295 ~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|.+...+. +.+.++|.+.|.++-|+|...++++.|+|++|+|||+...+.++++....+..+.++-+|.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~ 303 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPE 303 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCC
Confidence 99976554 3467899999999999999999999999999999999999999999877888888888874
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=213.43 Aligned_cols=271 Identities=19% Similarity=0.286 Sum_probs=228.9
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.++.++.+ ..++++.|.+|++|+...+.+.+. +.+|..+|..++.+.|...+++|+.|..+.+||+++|+..+.+
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt--YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT--YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeee--ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec
Confidence 666667654 478889999999999999987554 4599999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.+|...|+.++|+. +...+++|+.|.++++||.++.. .+++.+......|.++..+ +..+++|+.||+++.||++.
T Consensus 98 rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRK 174 (307)
T ss_pred ccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeec
Confidence 99999999999998 88999999999999999998764 3567777788889999876 45799999999999999998
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC---eEEEEEcCCccceeeec
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ---ICGLEWNRHHKEILSGH 281 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~ 281 (364)
+.. ... ....+|++++|+++++..++.. .|+++++.|-.+|+.+..+..+.. -...+++.....+++|
T Consensus 175 G~l---~sD--y~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg- 245 (307)
T KOG0316|consen 175 GTL---SSD--YFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG- 245 (307)
T ss_pred cee---ehh--hcCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec-
Confidence 643 222 2457899999999998777744 799999999999999988876532 4556777777777777
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccc-eeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSR-ILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
++||.+++||+.....+..+..+... |+++.++|.-.-++++.. +.+.+|.
T Consensus 246 -----SEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 246 -----SEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred -----cCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 56999999999999999999988887 899999998877777754 4455664
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=235.95 Aligned_cols=263 Identities=18% Similarity=0.310 Sum_probs=226.9
Q ss_pred CCCCCceEEEEcCCCCE-EEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKT-LAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
...+.|.+++|+|...+ +|+.+ .-.+.||+..+....+++......|.+++|.. +|.+|++|+..|.|++||+.+ +
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~-r 100 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKS-R 100 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEecccc-H
Confidence 34568999999996543 44443 46799999998888887877889999999998 999999999999999999654 4
Q ss_pred ceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
..+..+.+|+.++..+.|+| ++..+++|++|+.+++||+.+.. ....+.+|.+.|.+.+|+|....++++|+ .|
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGs--YD 175 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGS--YD 175 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCCeEEEecC--CC
Confidence 46788899999999999999 55678888999999999988754 35678899999999999999989999987 99
Q ss_pred CeEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeeccccccceeEEeecC
Q 040533 243 GCIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQHQTSRILELSQSP 320 (364)
Q Consensus 243 ~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~ 320 (364)
|.|++||++.. ..+.++.++.+|..+.+-|.|..++++. .+.+++||+.+|.. +..+..|...|+|+++..
T Consensus 176 g~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 176 GKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred ceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 99999999987 8889999999999999999999998875 78999999996554 445555999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 321 DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 321 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++..|++|+-|+.|++||+.+-+.+..+. ..++|.+++.||.
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~d 290 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPD 290 (487)
T ss_pred CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCC
Confidence 99999999999999999988777666553 5789999999983
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=232.75 Aligned_cols=279 Identities=19% Similarity=0.317 Sum_probs=236.6
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|. .-+++++.-.+.+|+..+....+.+. ...+.++++.|-.||++||+|...|.|+|||..+...++.
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s--rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS--RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH--hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 3788888884 46677777899999998877655332 4577899999999999999999999999999887778889
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 203 (364)
+.+|+.+|..+.|+|+++..|++|+.|+.+++||+.+... ...+.+|++.|.|.+|+| ++..+++|+.||.|++||++
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 9999999999999998999999999999999999987763 667889999999999999 45689999999999999998
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEe-cCCCeEEEEEcCCccceeeec
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVD-TKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 281 (364)
... ..+..+ .|..+|..+.+-|.| .++++++ ...+++||+.+| +.+..+. ++..|+|+.+..++..|+++.
T Consensus 185 ~~~--~~v~el-nhg~pVe~vl~lpsg-s~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 185 SLT--SRVVEL-NHGCPVESVLALPSG-SLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred cCC--ceeEEe-cCCCceeeEEEcCCC-CEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 753 335555 489999999999998 5666665 578999999965 4444444 778899999999999999886
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
. |+.+++||+.+.+.+..+. ..++|.+++.+|+++.++.|-.||.+.+=+....
T Consensus 258 L------D~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 258 L------DRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred c------ccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 5 9999999999999888876 4578999999999999999999999877654433
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=243.68 Aligned_cols=286 Identities=21% Similarity=0.365 Sum_probs=245.8
Q ss_pred eCCCCCCCcceeecccCCCccE-EEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEe
Q 040533 37 LDAPNLRNDYYSNMMDWGRNNI-LAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 115 (364)
++.+.++.+ +..++++.+++ ++.+.++.+++|+..+.++...+. .+.+.+..|-|.++++++|..+|.+.+||
T Consensus 367 i~~~GHR~d--VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~----~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSD--VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT----CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhh--eeEEEeecCceeeeecCCCcEEEEEccCcceeEEec----cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 445566666 66777777764 455567899999999998866665 33788999999999999999999999999
Q ss_pred cCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc----eee-------eeecccCcEEEEEEcCC
Q 040533 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN----VTS-------RINAHTAEVCGLKWSNE 184 (364)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~-------~~~~~~~~v~~~~~~~~ 184 (364)
+.+...+.++++|.+.+++++.+| ++..+++|+.|.+|++||...-.. ..+ ..-.....|.|+++|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 999999999999999999999999 999999999999999999752211 001 11124567999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCC
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKA 263 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~ 263 (364)
+++|+++--|.+|++|-+.+. +....+.+|.-||.|+..+|++ .++++|+ .|..|++|-+.-|.+.+++- |+.
T Consensus 520 gk~LaVsLLdnTVkVyflDtl---KFflsLYGHkLPV~smDIS~DS-klivTgS--ADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTL---KFFLSLYGHKLPVLSMDISPDS-KLIVTGS--ADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred CcEEEEEeccCeEEEEEecce---eeeeeecccccceeEEeccCCc-CeEEecc--CCCceEEeccccchhhhhhhcccC
Confidence 999999999999999998775 4477788999999999999998 6777876 89999999999999988864 557
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.|.++.|.|....++++ +.|+.|+-||-...+.+..+.+|...|++++.+|+|.+++++|.|.+|++|....
T Consensus 594 Svm~V~F~P~~~~FFt~------gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTC------GKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ceeEEEEcccceeEEEe------cCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 89999999988888776 5599999999999999999999999999999999999999999999999998665
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=228.61 Aligned_cols=278 Identities=20% Similarity=0.337 Sum_probs=241.6
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeec------CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVT------GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET 118 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 118 (364)
++-+..|+|++ +++++.||.|.+||..+|+..+-..+. -+.++|.|+.||.|..+||+|+.||.|+||.+++
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 45566778864 778889999999999999876554433 4678999999999999999999999999999999
Q ss_pred cceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 119 SKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 119 ~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
|.+++.+. +|...|+|+.|+. ++..+++++.|.++++.-+.+++. ++.+.+|.+.|+...|.++|..+++++.||+|
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred chHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 99999987 8999999999999 899999999999999999998875 77789999999999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec----CCCeEEEEEc
Q 040533 198 HVWDHSKMSSSKCLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----KAQICGLEWN 271 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~v~~~~~~ 271 (364)
++|+..+. .++.+++. ...+|.++-.-|.++.-++.+. ..+++.+.++. |+.++++.. .+...+.+.+
T Consensus 373 kvW~~Ktt---eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 373 KVWHGKTT---ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred EEecCcch---hhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 99996654 44555543 4567888888887766666654 78999999985 778888754 3567888999
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
|.|.++++. ++|+.++.|...+|+....+.-|...+..++-+|..+.||+-++||.+++|.
T Consensus 447 pkGewiYci------gED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCI------GEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEE------ccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999987 4599999999999999999999999999999999999999999999999995
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=228.75 Aligned_cols=275 Identities=18% Similarity=0.307 Sum_probs=236.8
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++..+ +.+++++.|..+.++|...++...+ ++||...|+.+.++|+...+++++.|-.|+||...........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~--~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILAT--LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhh--ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45555555 5688999999999999999887544 5599999999999999999999999999999999888778888
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA-HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
..|.++|+.+..+| +++||++++.||+..+.|++++..+...... ..-.+++.+|+|||.+|.+|..||.|++||+..
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 89999999999999 9999999999999999999988865444321 234589999999999999999999999999887
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccceeeecc
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~ 282 (364)
.. .+..|.+|.++|..++|+.+| +.++++. .|+.|++||++.-+...++... .++.++.|.+.|.+|+.+
T Consensus 379 ~~---~~a~Fpght~~vk~i~FsENG-Y~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-- 450 (506)
T KOG0289|consen 379 QT---NVAKFPGHTGPVKAISFSENG-YWLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-- 450 (506)
T ss_pred cc---ccccCCCCCCceeEEEeccCc-eEEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee--
Confidence 65 488899999999999999999 7777766 8999999999998888887655 459999999999999988
Q ss_pred CCccCCCCeEEEeeCC----CCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 283 FSSSGDGQKLCLWKYP----HMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
...++||-.. ++.++..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus 451 ------g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 ------GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ------cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 4445555544 67788888889989999999999999999999999888754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=215.19 Aligned_cols=285 Identities=16% Similarity=0.270 Sum_probs=234.6
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
++.+.++.+ -+++++.|....+|-..+|+. +-++.+|.+.|.|+..+.+.+.|++|+.|.++++||+++|+++..+
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGer--lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGER--LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCce--eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence 555666654 377888999999999888875 4556699999999999999999999999999999999999999998
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeC-----CCcEEEEEcccCc------ceeeeeecccCcEEEEEEcCCCCEEEEEeCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQ-----DKSIINHDVRVSN------NVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
+ ...+|..+.|++ ++++++.... .+.|.++|++... .+...+..+.+.++.+-|.|-++.|++|.+|
T Consensus 91 k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 91 K-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred e-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 8 678899999999 8888777654 3679999988322 2345566778899999999999999999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCc
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH 274 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 274 (364)
|.|..||++++. +.+...+.|...|+.++++|+. .++++++ .|.+-++||.++-+.++++....++++.+++|..
T Consensus 169 G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s--~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 169 GSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDR-TYFITGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred CcEEEEEcccCc--eeeechhhhccccccccccCCc-ceEEecc--cCccceeeeccceeeEEEeeecccccceeccccc
Confidence 999999998763 3455667789999999999998 4566655 9999999999999999999999999999999998
Q ss_pred cceeeeccCC------ccCCCC--eEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 275 KEILSGHGFS------SSGDGQ--KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 275 ~~l~~~~~~~------~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
..++.|.+.. +....| .-++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++..+..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 8888875421 001111 123444444556677889999999999999999999999999999987654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=240.26 Aligned_cols=266 Identities=16% Similarity=0.239 Sum_probs=205.5
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCcee----------e-eeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEE
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEVQ----------K-LLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLW 114 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~----------~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw 114 (364)
.+...+|+..++++++.+.....|+...+... . ...+.+|.+.|.+++|+| ++++|++|+.||+|++|
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW 103 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 35556677666777776666666765443211 1 123558999999999999 88999999999999999
Q ss_pred ecCCc-------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE
Q 040533 115 DAETS-------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (364)
|+.++ +.+..+.+|...|.+++|+|..+++|++++.|++|++||++++.. ...+..|...|.+++|+|++.+
T Consensus 104 di~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 104 GIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred ecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEEEEECCCCE
Confidence 99765 346678899999999999994457999999999999999987764 6677889999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEecccccc-eeEEEEccCCCcEEEeec-CCCCCeEEEEECCCCe-EEEEEec--C
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA-VKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKGT-CIHSVDT--K 262 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~-~~~~~~~--~ 262 (364)
|++++.|+.|++||+++.. .+..+.+|.+. +..+.|.+++..++++|. ++.|+.|++||+++.. +...... .
T Consensus 183 Latgs~Dg~IrIwD~rsg~---~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~ 259 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGT---IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259 (493)
T ss_pred EEEecCCCEEEEEECCCCc---EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence 9999999999999988753 46777777664 456789988866666552 2358999999998754 3333332 2
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPD 321 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~ 321 (364)
..+....|++++..++++. ..|+.|++||+.+++.+..... +..++..++|.|.
T Consensus 260 ~~~~~~~~d~d~~~L~lgg-----kgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 260 SALFIPFFDEDTNLLYIGS-----KGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CceEEEEEcCCCCEEEEEE-----eCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 4466678999999888763 2399999999999887766543 4456788888885
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=222.54 Aligned_cols=279 Identities=19% Similarity=0.358 Sum_probs=227.5
Q ss_pred CcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC---CEEEEEecCCcEEEEecCCcc
Q 040533 44 NDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA---KTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~ 120 (364)
++-.+.++.-.+..+++++.||.+++||..... ...+.+|.++|.+++|.-.. ..+++++.|.++++|..+.++
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~---~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKS---IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCce---EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 444577787777889999999999999987554 34445999999988885433 369999999999999988774
Q ss_pred ee----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC------------------------cceeeeeecc
Q 040533 121 LI----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS------------------------NNVTSRINAH 172 (364)
Q Consensus 121 ~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------------------~~~~~~~~~~ 172 (364)
.. ....+|...|-+++..+ ++..+++|+.|..|.+|+.... +.++..+.+|
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 33 33458999999999999 9999999999999999993211 1245678899
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 173 TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
..+|.++.|++ ...+++++.|.+|+.||+..+.. ..++. .+..+.++..+|.. .++++|+ .|..+++||.++
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---~~~~~-~~ksl~~i~~~~~~-~Ll~~gs--sdr~irl~DPR~ 331 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---KSTLT-TNKSLNCISYSPLS-KLLASGS--SDRHIRLWDPRT 331 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccc---eeeee-cCcceeEeeccccc-ceeeecC--CCCceeecCCCC
Confidence 99999999998 56899999999999999987654 44443 35678999999966 7888876 899999999988
Q ss_pred Ce---EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc-eeeeccccccceeEEeecCCCCEEEE
Q 040533 253 GT---CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT-KWGELQHQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 253 ~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~ 327 (364)
+. ..+++. +.+.|.++.|+|...+.++.. +.|+++++||+++.+ ++..+.+|...|.++.|+ ++.++++
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~-----S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvS 405 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG-----SYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVS 405 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEE-----ecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEe
Confidence 53 233443 457799999999988877654 449999999999887 999999999999999997 5569999
Q ss_pred EeCCCcEEEEEee
Q 040533 328 AAADETLRFWEAF 340 (364)
Q Consensus 328 ~~~dg~i~vw~~~ 340 (364)
|+.|++|+|+.-.
T Consensus 406 GGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 406 GGADNKLRIFKGS 418 (423)
T ss_pred ccCcceEEEeccc
Confidence 9999999998643
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=246.39 Aligned_cols=280 Identities=21% Similarity=0.338 Sum_probs=242.5
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
.+.+..|.++.+++++.+..|.+||..++..... .+.+|.+.|.++++..-+.+|++|+.|.++++||..+|++...+.
T Consensus 210 ~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~-~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~ 288 (537)
T KOG0274|consen 210 VVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILT-RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ 288 (537)
T ss_pred hhhhheeecCeEEecCCCceeEEeecccceEEEe-eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec
Confidence 4666777777888999999999999998876433 366999999999998778899999999999999999999999999
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
+|.+.|.++.. .+..+++|+.|.+|++|+++++.. +..+.+|..+|.++..+ +.++++|+.|++|++||+..
T Consensus 289 gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-- 360 (537)
T KOG0274|consen 289 GHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-- 360 (537)
T ss_pred CCCceEEEEEc---cCceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh--
Confidence 99999999988 678889999999999999997764 67777799999999987 77999999999999999875
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeeccCCc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
.+++..+.+|...|.++.+.+. ..+.+|+ .|++|++||+++. +++.++.++..+. -.....+++++++..
T Consensus 361 -~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~a--- 431 (537)
T KOG0274|consen 361 -GKCLKSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSA--- 431 (537)
T ss_pred -ceeeeeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEeccc---
Confidence 5679999999999999988775 5666665 8999999999999 8999988776544 334456777777754
Q ss_pred cCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
|+.|++||..+++++..+.+ |...|+.+++. ...+++++.||.+++||+++++....+.
T Consensus 432 ---D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 432 ---DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred ---cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhh
Confidence 99999999999999999998 67888888886 4678999999999999999998877663
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=214.18 Aligned_cols=263 Identities=20% Similarity=0.358 Sum_probs=216.4
Q ss_pred eEEEEcCC-CCEEEEEe-------cCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 91 TSISWSQD-AKTLAVGY-------MASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 91 ~~~~~s~~-~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.++.|||- .++||++. ..|++.|.++...+-+.... .-...+..++|++...+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889992 33444432 36899999987554444433 2457899999999888999999999999999988
Q ss_pred cCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
....++..++.|...|.++.|++ .+..+++++.|++|++|+...+ +.+.++.+|+..|...+|+|....++++++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~---~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S- 167 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP---NSVQTFNGHNSCIYQAAFSPHIPNLFASAS- 167 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC---cceEeecCCccEEEEEecCCCCCCeEEEcc-
Confidence 77778899999999999999999 5668888899999999996654 459999999999999999999999999987
Q ss_pred CCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEe
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELS 317 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~ 317 (364)
.|+++++||++..-....++. ..++.++.|+.-...+++.. +.|+.|+.||+++. .++.++.+|.-.|+.+.
T Consensus 168 -gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg-----~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk 241 (311)
T KOG0277|consen 168 -GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG-----GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVK 241 (311)
T ss_pred -CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec-----CCCceEEEEehhhccccceeecCCceEEEEEe
Confidence 799999999987433333554 46899999999777666543 45999999999874 56788999999999999
Q ss_pred ecCCC-CEEEEEeCCCcEEEEEeeCC-CCCcceeccCCceeeeeeccC
Q 040533 318 QSPDG-LTVVSAAADETLRFWEAFGP-SGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~-~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|||.. ..||+++.|-+++|||...+ ..+.+...|..-|.++.||+-
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc
Confidence 99954 58999999999999999854 445666788999999999874
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=239.59 Aligned_cols=268 Identities=19% Similarity=0.267 Sum_probs=203.2
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCc----------cee---eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETS----------KLI---RNLEGHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
.|.....++++..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|+|.++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444555556555555555555555554332 221 246789999999999996778999999999999
Q ss_pred EEEcccCc------ceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEcc
Q 040533 156 NHDVRVSN------NVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP 228 (364)
Q Consensus 156 ~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 228 (364)
+||+.... ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++. +.+..+..|...|.+++|+|
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg---~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---KAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---eEEEEEcCCCCceEEEEEEC
Confidence 99997643 2355678999999999999975 69999999999999998764 44777888999999999999
Q ss_pred CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eee
Q 040533 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGE 305 (364)
Q Consensus 229 ~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~ 305 (364)
++ .++++++ .|+.|++||+++++.+..+..+. ....+.|.+++..++++.. +.+.|+.|++||+++... +..
T Consensus 179 dG-~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~--s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 179 DG-SLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC--SKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CC-CEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEec--CCCCCCeEEEEeCCCCCCceeE
Confidence 98 5666765 89999999999999888876553 3457789998877765431 124489999999987553 333
Q ss_pred cccc-ccceeEEeecCCCCEEEEEe-CCCcEEEEEeeCCCCCccee-ccCCceeeeeeccCC
Q 040533 306 LQHQ-TSRILELSQSPDGLTVVSAA-ADETLRFWEAFGPSGSGDFV-SHLDGLLSLKVSPIR 364 (364)
Q Consensus 306 ~~~~-~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 364 (364)
...+ ...+....|++++++|++++ .||.|++||+.+++...... .+..++.+++|.|.|
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 3323 34566678999999999887 59999999999887655443 346678899999875
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=246.48 Aligned_cols=245 Identities=18% Similarity=0.301 Sum_probs=199.8
Q ss_pred eec-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--------------------------------c---------
Q 040533 82 KVT-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--------------------------------S--------- 119 (364)
Q Consensus 82 ~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--------------------------------~--------- 119 (364)
.+. .|.+.|.++.||+||+|||+|+.||.|+||.+.. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 8999999999999999999999999999998754 0
Q ss_pred -------------------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE
Q 040533 120 -------------------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180 (364)
Q Consensus 120 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 180 (364)
+++..+.+|...|..+.|+ ..++|++++.|.+|++|++....+ +..+ .|...|+|++
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~C-L~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKEC-LKVF-SHNDFVTCVA 416 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcce-eeEE-ecCCeeEEEE
Confidence 1123456799999999999 578999999999999999986665 4544 7999999999
Q ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 181 WSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 181 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
|+| |.+++++|+-||.++||++...+ +..+..-..-|++++|.|+|+..++ |+.+|.+++|++...+.....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEee
Confidence 999 88999999999999999987532 4444455688999999999966555 459999999999987776554
Q ss_pred ec---------CCCeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCCCceeeecccccc--ceeEEeecCCCCEEEE
Q 040533 260 DT---------KAQICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS--RILELSQSPDGLTVVS 327 (364)
Q Consensus 260 ~~---------~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~ 327 (364)
.. +..|+++.+.|...- +++. +.|..|+|||.++..++..++++.. .-....|+.||++|++
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT------SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVT------SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEe------cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 21 236999999986652 4443 2399999999999999999887543 3356789999999999
Q ss_pred EeCCCcEEEEEeeCCC
Q 040533 328 AAADETLRFWEAFGPS 343 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~ 343 (364)
+++|..|++|++....
T Consensus 564 ~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSFN 579 (712)
T ss_pred eecCceEEEEeCCCCc
Confidence 9999999999985543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=243.34 Aligned_cols=280 Identities=18% Similarity=0.299 Sum_probs=238.2
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+..++|+|.+ ++++--.|.|.+||..-+.+.. .+..|.++|..++|+|++.++++|+.|-.|+||+.++.+++.++
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHh--hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 6778999965 7777789999999998777644 45599999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+|-..|..+.|++ .-..++++|.|.+|+||+..++.. +..+.+|+..|.|..|+|...++++++-|-+|++||+...
T Consensus 90 ~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred ccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 99999999999999 899999999999999999998775 8889999999999999998899999999999999998532
Q ss_pred CCC--------------------------cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--E
Q 040533 206 SSS--------------------------KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--H 257 (364)
Q Consensus 206 ~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~ 257 (364)
... -.-+.+.+|...|+-++|+|.- -++++|+ .|..|++|.+...+.- .
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~--DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGA--DDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecC--CcceeeEEEeccccceeeh
Confidence 110 1123456899999999999987 4777776 9999999998654322 2
Q ss_pred EE-ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 258 SV-DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 258 ~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
+. .+.+.|.++-|+|....+++. ++|+.|++||+...+.+.+++...+..+.++-+|..+++++| .|+-+.|
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSn------sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~V 317 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSN------SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIV 317 (1202)
T ss_pred hhhcccCCcceEEecCccceeEec------CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEE
Confidence 22 345789999999999999887 569999999999999999998777888999999999877765 4555667
Q ss_pred EEeeC
Q 040533 337 WEAFG 341 (364)
Q Consensus 337 w~~~~ 341 (364)
|.++.
T Consensus 318 FkleR 322 (1202)
T KOG0292|consen 318 FKLER 322 (1202)
T ss_pred EEEcc
Confidence 77764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=229.00 Aligned_cols=289 Identities=15% Similarity=0.239 Sum_probs=229.3
Q ss_pred eeecccCCC--ccEEEEEeCCeEEEEECCCCcee--eeeee-cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGR--NNILAIALGLELYLWKQENGEVQ--KLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~--~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
.+.+++..| .++++++.|..|++||+...... ....+ +.....|.++.|++.|..|++.+.....+|+|-...+.
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~ 248 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI 248 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee
Confidence 356666666 46899999999999999865321 11111 23355799999999999988888888999999764443
Q ss_pred eee------------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-----cccCcEEEEEEcCC
Q 040533 122 IRN------------LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-----AHTAEVCGLKWSNE 184 (364)
Q Consensus 122 ~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~ 184 (364)
... .++|...++|.+|+|.+.+.+++++.||++++||+.........+. +..-+++.++|+++
T Consensus 249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd 328 (641)
T KOG0772|consen 249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD 328 (641)
T ss_pred eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence 332 3578899999999998899999999999999999986654333332 23457899999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEEe-
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSVD- 260 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~- 260 (364)
+++||+|..||.|.+|+............-.+|.. .|+|++|+++|++|+. -+ .|+++++||++..+ ++....
T Consensus 329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS-Rg--~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS-RG--FDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh-cc--CCCceeeeeccccccchhhhcC
Confidence 99999999999999999865544333444456776 8999999999965555 43 79999999998754 443332
Q ss_pred --cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 261 --TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 261 --~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
...+-+.++|||+.+++++|.....+...+.+.+||..+...+.++.-....|..+.|+|.-+.|++|+.||++++|=
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 335578899999999999999887778888999999999999999888888999999999999999999999998863
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=220.99 Aligned_cols=265 Identities=18% Similarity=0.311 Sum_probs=225.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee--------ecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL--------EGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
+...-+.|..|||||++|++|+.||.|.+||..+|+..+.+ --+..+|.|++|+. +..++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 55677899999999999999999999999999998765543 34778999999999 9999999999999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
|.++++.++.+.-.+|...|+|+.|+.|+..+++++.|.++++.-+.. +++++.+++|.+.|+...|.++|..++.+
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---GK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS---GKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc---chhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999986665569999999999999999999999999999998665 46699999999999999999999766654
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccc---c
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---Q 309 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~ 309 (364)
. .||+|++|+..+.+++.+++.. .+|.++..-|.+. .++++. ..++++|.++. |+.++.+.. .
T Consensus 367 S---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN------rsntv~imn~q-GQvVrsfsSGkRE 436 (508)
T KOG0275|consen 367 S---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN------RSNTVYIMNMQ-GQVVRSFSSGKRE 436 (508)
T ss_pred c---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc------CCCeEEEEecc-ceEEeeeccCCcc
Confidence 4 6999999999999999888653 4688887777654 344443 37889998874 566666643 2
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+...+.+.+|.|.++++.++|+.++.|.+.+++...++..|...|.+++-+|-
T Consensus 437 gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence 345667789999999999999999999999999999999999888888888774
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=234.27 Aligned_cols=303 Identities=16% Similarity=0.259 Sum_probs=253.3
Q ss_pred eeecccCCCc----cEEEEEeCCeEEEEECCC-Cce------eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEe
Q 040533 47 YSNMMDWGRN----NILAIALGLELYLWKQEN-GEV------QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 47 ~~~~~~~~~~----~~~~~~~~~~i~iw~~~~-~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 115 (364)
-+..++|-|. +.+..-.++.+..|.++. +.. ....++.+|...|.++++|.+...+++|+ .+.++||+
T Consensus 322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn 400 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWN 400 (888)
T ss_pred heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEE
Confidence 3566666552 234445678888887765 211 22356679999999999999888777775 67899999
Q ss_pred cCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
..+.++++++... .+.+..|-| .++++++|...|.+.+||+.+.. +.....+|.+.|.+++.+||++.+++|+.|.
T Consensus 401 ~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~-l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 401 RDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASAS-LVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred ccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhh-hhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 9999999999853 889999999 99999999999999999998776 4777789999999999999999999999999
Q ss_pred eEEEEeCCCCCC--C--cceEEe-----cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCe
Q 040533 196 LVHVWDHSKMSS--S--KCLHRF-----RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQI 265 (364)
Q Consensus 196 ~i~iwd~~~~~~--~--~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v 265 (364)
+|++||+.-... + +.+..+ -.-...|.|++++|+++++.+ +- .|.++++|-+.+-+..-++.+ .-||
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV-sL--LdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV-SL--LDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE-Ee--ccCeEEEEEecceeeeeeecccccce
Confidence 999999753211 1 111111 123567999999999965555 33 799999999999887776654 4799
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
.++.++|+++.+++|+. |.+|++|-++-|.+-+.+-+|...|.++.|-|+...+.++|.|+.|+-||-...+.+
T Consensus 554 ~smDIS~DSklivTgSA------DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSA------DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred eEEeccCCcCeEEeccC------CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence 99999999999999865 999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCceeeeeeccC
Q 040533 346 GDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 346 ~~~~~~~~~v~~~~~sp~ 363 (364)
+.+.+|...|++++.+|.
T Consensus 628 q~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred eeeccchheeeeeEEcCC
Confidence 999999999999999985
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=211.29 Aligned_cols=266 Identities=18% Similarity=0.290 Sum_probs=221.2
Q ss_pred EEEEEeCCeEEEEECCC----------CceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 58 ILAIALGLELYLWKQEN----------GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+++++....|.-+++.- ..+.+++.+..|.++|++++. ++.++|+|+.|-+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 67777777777776542 223456778899999999998 589999999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCC--EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 128 HDKRVATASWNHWNGH--ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
|.+.|+++.|.+ .-. .|++|+.||.|.+|+...- .....+++|.+.|+.++.+|.+++.++.+.|+.++.||+-.+
T Consensus 82 HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 82 HAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred cccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 999999999987 443 8999999999999998765 458889999999999999999999999999999999998876
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCc
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
.... +..+. ..-..+.|+|.|.++++.+ ...|-+|.+.+......+..+..+.++.|...+.+ ++|
T Consensus 160 r~a~-v~~L~---~~at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L-~vG----- 225 (362)
T KOG0294|consen 160 RVAF-VLNLK---NKATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFLDGSEL-LVG----- 225 (362)
T ss_pred ccce-eeccC---CcceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeecCCceE-EEe-----
Confidence 5422 22332 2234499999998777764 46799999999888877777777888888765554 444
Q ss_pred cCCCCeEEEeeCCCCceeeeccccccceeEEee--cCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ--SPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
++++.|.+||..+..+...+.+|...|.++.+ .|++.+|+++|.||.|+|||++..
T Consensus 226 -~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 226 -GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 34899999999999999999999999999984 567889999999999999999876
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=204.58 Aligned_cols=278 Identities=18% Similarity=0.249 Sum_probs=226.6
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec--CCcEEEEecCCccee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM--ASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~ 122 (364)
.+++++|++++ +++.+.|..+++||..+++..+... .++-.+..++|......++.++. |.+|+..++.+.+.+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 37889998864 5666778899999999998766655 45566888888877777777765 889999999999999
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
+.+.+|...|..++.+| -++.+++++.|++|++||++..++. ..+.... -...+|.|+|-++|++.....|++||+
T Consensus 94 RYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cq-g~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQ-GLLNLSG--RPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred EEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCc-eEEecCC--CcceeECCCCcEEEEecCCCeEEEEEe
Confidence 99999999999999999 7799999999999999999977653 3332222 235789999999999988889999999
Q ss_pred CCCCCCcceEEec---ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC----eEEEEEcCCcc
Q 040533 203 SKMSSSKCLHRFR---DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ----ICGLEWNRHHK 275 (364)
Q Consensus 203 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----v~~~~~~~~~~ 275 (364)
|....+ +..++. +.....+.+.|+|+|+.++++. ..+.+++.|.-+|....++..... -...+|+|+++
T Consensus 170 Rs~dkg-PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 170 RSFDKG-PFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred cccCCC-CceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 976442 333333 3356789999999999999875 589999999999998888865422 25789999999
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
++++|.. ||.|.+|+++++..+..+++ +.+++.++.|+|.-.++++++ ..+.+|-....
T Consensus 246 Fvl~gs~------dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 246 FVLSGSD------DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred EEEEecC------CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence 9999854 99999999999999999998 688999999999877777665 57888866543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=226.24 Aligned_cols=273 Identities=19% Similarity=0.280 Sum_probs=231.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+..+.|-++ .+.+++.|..|++|+...++......+.+..+.|+++.|.+++..+++++.|+.+++|++.+.+...++
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh
Confidence 566666654 578899999999999988886666677788899999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+|.+.|+++.|.. ....+++|+.|.+|+.||+....+....+. ...+..+..+ ...+++|..|++|++||.+..
T Consensus 258 sGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred cccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc--cccccceEec--ceeeeecccccceEEEeccCC
Confidence 99999999999987 555699999999999999987665433332 3445666665 457899999999999998875
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-----CCCeEEEEEcCCccceeee
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-----KAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~ 280 (364)
.. ......+ +.|+++..++++..++.++ .|.++.+.|+++.+....+.. ....+.+.|||++.|+++|
T Consensus 333 ~~---~~sv~~g-g~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 333 DK---TRSVPLG-GRVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred ce---eeEeecC-cceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 43 5555544 5899999999998888774 799999999999988877753 3568999999999999999
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeecccccc--ceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTS--RILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+. ||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 406 S~------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 406 SA------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cC------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 65 99999999999999988876554 499999999999999999999999993
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=212.30 Aligned_cols=282 Identities=17% Similarity=0.315 Sum_probs=228.6
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCC------------C----ceeeeeeecCCCCCceEEEEcCCCCEEEEEecC
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQEN------------G----EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA 108 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~------------~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 108 (364)
.+.+-+|++++ +.+++.|-.|+|+|.+. + ....+.++..|.++|+++.|+|....|++|+.|
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 36778889876 34466789999999861 1 112345677899999999999999999999999
Q ss_pred CcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee--eecccCcEEEEEEcCC
Q 040533 109 SKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNE 184 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~ 184 (364)
++|++||+......+-++ ....+|.++.|+| .|++|+.|....++++||+++.++.+.. -..|.+.|+++.+++.
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t 272 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST 272 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC
Confidence 999999987543322221 2457899999999 9999999999999999999988865443 3468899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-c-ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-H-RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 262 (364)
+++.++++.||.|++|| +-..+++.++.. | ...|.+..|..+++++|.+| .|..+++|.+.+++++..+.+.
T Consensus 273 ~~lYvTaSkDG~IklwD---GVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG---~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 273 GSLYVTASKDGAIKLWD---GVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG---KDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ccEEEEeccCCcEEeec---cccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC---CcceeeeeeecCCceEEEEecC
Confidence 99999999999999999 555566766642 4 35799999999998877776 7999999999999999988654
Q ss_pred C------CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCCcEE
Q 040533 263 A------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADETLR 335 (364)
Q Consensus 263 ~------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 335 (364)
+ .-+...|+....+++.-. ...+.+.-||.++...+..+. +|.+.+..+.-||.+.-+++|+.|-.++
T Consensus 347 g~tgrq~~rtqAvFNhtEdyVl~pD-----Eas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 347 GTTGRQKHRTQAVFNHTEDYVLFPD-----EASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR 421 (430)
T ss_pred CcccchhhhhhhhhcCccceEEccc-----cccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence 2 134566777777777653 236789999999987776654 7999999999999999999999999999
Q ss_pred EEEee
Q 040533 336 FWEAF 340 (364)
Q Consensus 336 vw~~~ 340 (364)
+|--+
T Consensus 422 FWyrr 426 (430)
T KOG0640|consen 422 FWYRR 426 (430)
T ss_pred eeeec
Confidence 99643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=231.25 Aligned_cols=250 Identities=16% Similarity=0.227 Sum_probs=189.5
Q ss_pred EecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc-------eeeeeecccCcEE
Q 040533 105 GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN-------VTSRINAHTAEVC 177 (364)
Q Consensus 105 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~v~ 177 (364)
|+.++.|++|+......+..+.+|...|.+++|+|.++++|++|+.||+|++||+.++.. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556788999998877788889999999999999995589999999999999999976431 2345678999999
Q ss_pred EEEEcCCCCE-EEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 178 GLKWSNEGNL-LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 178 ~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
+++|+|++.. |++++.|+.|++||+++... +..+. +...|.+++|+|+|. ++++++ .|+.|++||+++++.+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~-~~~~V~SlswspdG~-lLat~s--~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIKGN-LLSGTC--VGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCCCC-EEEEEe--cCCEEEEEECCCCcEE
Confidence 9999998865 57899999999999987542 44443 567899999999995 556654 7999999999999998
Q ss_pred EEEecCC-Ce-----EEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeeecc--ccccceeEEeecCCCCEEEE
Q 040533 257 HSVDTKA-QI-----CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQ--HQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 257 ~~~~~~~-~v-----~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~ 327 (364)
..+..+. .+ ....|++++.+++++..- ...++.|+|||++. .+++..+. .+.+.+......++|.++++
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d--~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS--KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcC--CCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence 8886553 22 223456888888876420 01125899999985 55555443 23333333444556889999
Q ss_pred EeCCCcEEEEEeeCCCCCccee--ccCCceeeeeeccCC
Q 040533 328 AAADETLRFWEAFGPSGSGDFV--SHLDGLLSLKVSPIR 364 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~sp~~ 364 (364)
|+.|+.|++|++..+. +..+. .+..++.+++|.|.|
T Consensus 281 GkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 9999999999997653 22222 357789999999986
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=240.26 Aligned_cols=270 Identities=20% Similarity=0.344 Sum_probs=226.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEe--cCCcEEEEecCC------------cceeeeeecCCCcEEEEEeecCCCCEEEEeeC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGY--MASKLQLWDAET------------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 150 (364)
.+...|.++..+|||..+|+|+ .||.++||+.+. .+.+.++..|.+.|+|+.|+| ++.+||+|+.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSD 89 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSD 89 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccC
Confidence 3456789999999999999999 899999998742 234556778999999999999 9999999999
Q ss_pred CCcEEEEEccc------Cc-----------ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE
Q 040533 151 DKSIINHDVRV------SN-----------NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR 213 (364)
Q Consensus 151 dg~i~~~d~~~------~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 213 (364)
|+.|.+|.... .. .....+.+|...|..++|+|++.+|++++.|++|.+|+.++. +.+..
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF---~~~~v 166 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF---ELLKV 166 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---eeeee
Confidence 99999999872 00 245677899999999999999999999999999999997775 55889
Q ss_pred ecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-------CCeEEEEEcCCccceeeeccCCcc
Q 040533 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------AQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 214 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
+.+|.+.|..+.|+|-|+ ++++-+ .|++|++|++.+....+.+..+ .....+.|||||.+|++...+.
T Consensus 167 l~~H~s~VKGvs~DP~Gk-y~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n-- 241 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGK-YFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN-- 241 (942)
T ss_pred eecccccccceEECCccC-eeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc--
Confidence 999999999999999995 455544 7999999998887676666432 3478999999999999987654
Q ss_pred CCCCeEEEeeCCCCceeeeccccccceeEEeecCC-----CC------------EEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD-----GL------------TVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-----~~------------~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+...++.|.+..+.+.-..+-+|.+++.++.|+|. .+ .+|+|+.|++|.||.....+++....
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~ 321 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH 321 (942)
T ss_pred CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence 55678999999999988899999999999999981 11 57899999999999997777765543
Q ss_pred -ccCCceeeeeeccC
Q 040533 350 -SHLDGLLSLKVSPI 363 (364)
Q Consensus 350 -~~~~~v~~~~~sp~ 363 (364)
-....|.+++|||.
T Consensus 322 ~lf~~SI~DmsWspd 336 (942)
T KOG0973|consen 322 NLFNKSIVDMSWSPD 336 (942)
T ss_pred hhhcCceeeeeEcCC
Confidence 34678999999985
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=223.16 Aligned_cols=266 Identities=18% Similarity=0.294 Sum_probs=227.2
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
+.+..|.+.+..+.|-++...|++|+.|..|++|+....+ .+.++.+..++|+.+.|.+ ++..+++++.|+.+++|+
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeee
Confidence 3455889999999999998999999999999999987665 6777888889999999999 899999999999999999
Q ss_pred cccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
+...+ ...++.+|.+.|+++.|......+++|+.|.+|++||+.+... ..++. ..+.+..|..++ ..+++|.
T Consensus 248 vd~~r-~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C---~kt~l-~~S~cnDI~~~~---~~~~SgH 319 (459)
T KOG0288|consen 248 VDSLR-LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC---SKTVL-PGSQCNDIVCSI---SDVISGH 319 (459)
T ss_pred ccchh-hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe---ecccc-ccccccceEecc---eeeeecc
Confidence 98766 4778899999999999988777799999999999999877433 33332 234456666553 5677765
Q ss_pred CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc----cccee
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ----TSRIL 314 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~ 314 (364)
.|++|++||.++..+...++.++.|+++..++++..+++... |..+.+.|+++.+....+... ....+
T Consensus 320 --~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssR------Ddtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 320 --FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSR------DDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred --cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecC------CCceeeeecccccEEEEeeccccccccccc
Confidence 899999999999999999999999999999999999998754 999999999998887776532 23478
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCC--ceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD--GLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--~v~~~~~sp~ 363 (364)
.+.|||++.|+++||.||.|+||++.+++....+..... .|++++|+|.
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 999999999999999999999999999999888875544 4999999985
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=196.87 Aligned_cols=270 Identities=19% Similarity=0.280 Sum_probs=224.2
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
+.+.+|+.+++.+.++.+|.+|.+++.|.++.||-..+|+.+.++.+|.+.|+|++.+. +.+.+++|+.|.++++||++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcC
Confidence 34569999999999999999999999999999999889999999999999999999988 89999999999999999999
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCC----CCcceEEecccccceeEEEEccCCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-----DNLVHVWDHSKMS----SSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
++++ +..+ ....+|..+.|+++|++++...+ .+.|.++|++... ...+...+..+.+.++.+-|.|-++
T Consensus 83 tGk~-la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TGKQ-LATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCcE-EEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 9986 3333 35678999999999998887754 3679999998543 4456777778889999999999996
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEE--ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSV--DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
.+++ |. .||.|.+||+++++..... .+...|+.++++++..++++++. |.+-++||..+.+.++++..
T Consensus 161 ~ii~-Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~------Dttakl~D~~tl~v~Kty~t- 230 (327)
T KOG0643|consen 161 TIIA-GH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK------DTTAKLVDVRTLEVLKTYTT- 230 (327)
T ss_pred EEEE-ec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc------CccceeeeccceeeEEEeee-
Confidence 5555 44 8999999999998655433 34578999999999999998854 99999999999999998864
Q ss_pred ccceeEEeecCCCCEEEEEeCCCc--------------EEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 310 TSRILELSQSPDGLTVVSAAADET--------------LRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~--------------i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..+|++.+++|....++.|+.... -++|++--.+.+..+++|-++|++|+|+|.
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 568999999998777777654322 233333333446677899999999999995
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=196.17 Aligned_cols=267 Identities=15% Similarity=0.313 Sum_probs=227.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
+.+++|+.+ .+..++.|+.+.+|+++..+........+|.+.|-.++|+| ..+.+++++.|.+|++||+..+++...
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 778889875 47788899999999999887766677779999999999998 457899999999999999999999998
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+....+.+ .+.|+| ++++++.++.|..|...|.++.+. .. -......++.++|+.++.+++....-|.|.|.....
T Consensus 103 i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~-~~-~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 103 IETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKI-VN-EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred eeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccce-ee-hhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 88655554 578999 999999999999999999987663 22 224456688899998787777777779999998664
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.+++..+++|+....|+.|+|+|+ .+++|+ .|..+.+||+..--+++.+. ..-+|..+.|+.+|++|+++
T Consensus 179 ---Lkpv~si~AH~snCicI~f~p~Gr-yfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa--- 249 (313)
T KOG1407|consen 179 ---LKPVQSIKAHPSNCICIEFDPDGR-YFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA--- 249 (313)
T ss_pred ---cccccccccCCcceEEEEECCCCc-eEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc---
Confidence 466999999999999999999995 566655 89999999999988888875 45789999999999999988
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
++|..|-|-++++|..+.+++ +.++...++|+|...+||-+..|
T Consensus 250 ---SEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 250 ---SEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ---CccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 559999999999999999986 67888999999999999887655
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=209.35 Aligned_cols=273 Identities=18% Similarity=0.305 Sum_probs=222.9
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc------------------ceeeeeecCCCcEEEEEeecCC
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS------------------KLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
...+..|+.++.+.+|+|||.++|+|+.|..|+|.|++.. -.++++..|..+|+++.|+| .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 3445689999999999999999999999999999998621 24567778999999999999 9
Q ss_pred CCEEEEeeCCCcEEEEEcccCcceeee--eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc
Q 040533 142 GHILTSGSQDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 142 ~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
..+|++|+.|++|+++|+..... .+. ......+|.+++|+|.|.+|+.|.....+++||+++.+.......-..|.+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~sa-KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSA-KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHH-HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999999874431 111 113456899999999999999999999999999887543222223346889
Q ss_pred ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
.|+++.+++.+ .+.++++ .||.|++||--+++++.++. .+..|++..|..+++++++. +.|..+++|.
T Consensus 263 ai~~V~Ys~t~-~lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS------G~DS~vkLWE 333 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS------GKDSTVKLWE 333 (430)
T ss_pred ceeEEEecCCc-cEEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec------CCcceeeeee
Confidence 99999999998 6888876 99999999999999998885 24679999999999999987 4599999999
Q ss_pred CCCCceeeeccccc-----cceeEEeecCCCCEEEEEeC-CCcEEEEEeeCCCCCccee-ccCCceeeeeeccC
Q 040533 297 YPHMTKWGELQHQT-----SRILELSQSPDGLTVVSAAA-DETLRFWEAFGPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 297 ~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
+.+++++.++.+-. .--+...|+....|++.-.+ .+.+.-||.++...+..+. +|.+.+..+.-||.
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence 99999999886531 12345567777777776543 4679999999988877665 89999999998885
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=225.10 Aligned_cols=296 Identities=23% Similarity=0.308 Sum_probs=240.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATA 135 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 135 (364)
+.++.++.+|.+.+|++.+++.. .+++++...|+++.=+|--+.+|.|..+|+|.|++++.++.+.+++...++|+++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v--~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vtsl 250 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVV--YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSL 250 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEE--EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEE
Confidence 45888899999999999999874 5555888999999999999999999999999999999999999999556999999
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK----------- 204 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------- 204 (364)
+|.-+...++++|+..|.+.+||++..+........|.+.|....|.|....+++++.|..+++|=.++
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence 998844457778888899999999876654445556777777777777777777777777666553321
Q ss_pred --------------------------------------------------------------------------------
Q 040533 205 -------------------------------------------------------------------------------- 204 (364)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (364)
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence
Q ss_pred ------------------------------------------------------------------CCCCcceEEe---c
Q 040533 205 ------------------------------------------------------------------MSSSKCLHRF---R 215 (364)
Q Consensus 205 ------------------------------------------------------------------~~~~~~~~~~---~ 215 (364)
.+.+.....+ .
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 0000001111 2
Q ss_pred ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEe
Q 040533 216 DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~ 295 (364)
.|.++|+.++...-+ .++++++ .+|.+.+||..+...+..+.....+..+..+.....++.+. +|-.|.++
T Consensus 491 ah~~~V~gla~D~~n-~~~vsa~--~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~------ddf~I~vv 561 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTN-RLLVSAG--ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL------DDFSIRVV 561 (910)
T ss_pred cccCceeEEEecCCC-ceEEEcc--CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc------CceeEEEE
Confidence 356677777776655 4555554 79999999999999999999999999999999888887774 49999999
Q ss_pred eCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 296 KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 296 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|..+.+.++++.+|.+.|++++|||||++|++++.|++|++||+.++..+-.+. -..+.+++.|||.
T Consensus 562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPn 628 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPN 628 (910)
T ss_pred EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCC
Confidence 999999999999999999999999999999999999999999999998877664 4778999999995
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=236.45 Aligned_cols=291 Identities=19% Similarity=0.295 Sum_probs=228.5
Q ss_pred cceeecccCCCcc--EEEEE--eCCeEEEEECCCC----------ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCc
Q 040533 45 DYYSNMMDWGRNN--ILAIA--LGLELYLWKQENG----------EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110 (364)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~~--~~~~i~iw~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 110 (364)
+..+.+++-+|+. +.+++ .|+.+.||+.+.- -...+.+...|.+.|+|+.|+|||++||+|++|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 3346677778875 55556 5788889986521 12345666789999999999999999999999999
Q ss_pred EEEEecCC------------------cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc
Q 040533 111 LQLWDAET------------------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH 172 (364)
Q Consensus 111 i~iw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 172 (364)
|.||.... .+....+.+|...|..++|+| ++.+|++++.|++|.+||..+. .....+.+|
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H 170 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGH 170 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc-eeeeeeecc
Confidence 99999762 135667889999999999999 9999999999999999999988 568899999
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc------ccceeEEEEccCCCcEEEeec-CCCCCeE
Q 040533 173 TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH------RAAVKALAWCPYQFNVLASGG-GTQDGCI 245 (364)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~-g~~d~~i 245 (364)
.+.|..+.|.|-|++||+-+.|++|++|++.+... .+.+.++ ...+..+.|+|||.++.+..+ ...-.++
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i---~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI---EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEccccee---eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 99999999999999999999999999999765333 3333322 335788999999976655432 0023468
Q ss_pred EEEECCCCeEEEEE-ecCCCeEEEEEcCC------c---------cceeeeccCCccCCCCeEEEeeCCCCceeeeccc-
Q 040533 246 KIWNVQKGTCIHSV-DTKAQICGLEWNRH------H---------KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH- 308 (364)
Q Consensus 246 ~i~d~~~~~~~~~~-~~~~~v~~~~~~~~------~---------~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~- 308 (364)
.|.+-.+.+.-..+ .|..++.++.|+|. . .|.+++ .++.|++|.||.....+++.....
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A----vgSqDrSlSVW~T~~~RPl~vi~~l 323 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA----VGSQDRSLSVWNTALPRPLFVIHNL 323 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE----EecCCccEEEEecCCCCchhhhhhh
Confidence 88888777765555 45688999999972 1 111111 336799999999988888776543
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
....|.+++|+|||..|+++|.||+|.+..++..+.
T Consensus 324 f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 324 FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 456899999999999999999999999999887543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=214.38 Aligned_cols=250 Identities=23% Similarity=0.434 Sum_probs=208.4
Q ss_pred cCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCcc----------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 84 TGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETSK----------LIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
..|.+.|+.+..-|+. ..+|+++..+.|.|||..+.. .-..+.+|...-..++|++...-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3789999999999955 567778889999999986431 11267789887888999998888999999999
Q ss_pred cEEEEEcccCcc------eeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEE
Q 040533 153 SIINHDVRVSNN------VTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225 (364)
Q Consensus 153 ~i~~~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 225 (364)
.|++||+..... ....+.+|...|..++|++ +..+|++++.|+.+.|||+|.. ..++.....+|.+.|.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEE
Confidence 999999976543 3557889999999999999 5678999999999999999974 5566778889999999999
Q ss_pred EccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC---
Q 040533 226 WCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM--- 300 (364)
Q Consensus 226 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~--- 300 (364)
|+|.+.++||+|+ .|++|++||+|+- +++.++.. ...|..+.|+|....+++.+ +.|+.+.+||+..-
T Consensus 280 fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS-----g~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 280 FNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS-----GTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec-----ccCCcEEEEeccccccc
Confidence 9999999999987 9999999999984 45566654 47799999999988877654 46999999998642
Q ss_pred -----------ceeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeC
Q 040533 301 -----------TKWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFG 341 (364)
Q Consensus 301 -----------~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~ 341 (364)
+++..-.+|...|..+.|+|+.. .|++.+.|+.+.||++..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 23345568999999999999887 467889999999999863
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-31 Score=202.03 Aligned_cols=260 Identities=17% Similarity=0.255 Sum_probs=207.3
Q ss_pred CCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCC-ccee-eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 85 GEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAET-SKLI-RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 85 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
..++.|.+++||| ...++++|+.||+|++|+++. |... +....|.++|.+++|+. ++..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccC
Confidence 4578899999999 556777999999999999986 3332 34456999999999999 999999999999999999998
Q ss_pred CcceeeeeecccCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGN--LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
++ ...+..|.++|..+.|-+... .|++|+.|.+|+.||.|.. .++.++. -++.++++..-. -+++.+.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~---~pv~t~~-LPeRvYa~Dv~~---pm~vVat- 173 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS---NPVATLQ-LPERVYAADVLY---PMAVVAT- 173 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC---Ceeeeee-ccceeeehhccC---ceeEEEe-
Confidence 86 566778999999999988555 8999999999999998864 3455554 356677665533 2444443
Q ss_pred CCCCeEEEEECCCCeEEEE-Ee--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC--ceeeeccccc----
Q 040533 240 TQDGCIKIWNVQKGTCIHS-VD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM--TKWGELQHQT---- 310 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~-~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~---- 310 (364)
.++.|.+|+++++..... ++ ..-++.+++..++....+.|.. +|.+.|..+..+ +.-..++.|.
T Consensus 174 -a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi------EGrv~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 174 -AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI------EGRVAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred -cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee------cceEEEEecCCCCccCceeEEEeccCCC
Confidence 689999999987644322 22 2356889998888887777754 999999998876 3334455554
Q ss_pred -----cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 311 -----SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 311 -----~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
..|.+|+|+|.-..|+|++.||++.+||-.....++....|..+|++.+|+-
T Consensus 247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~ 303 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR 303 (347)
T ss_pred CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC
Confidence 2578899999999999999999999999999999998889999999999874
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=199.73 Aligned_cols=265 Identities=16% Similarity=0.229 Sum_probs=206.9
Q ss_pred eeecccCCC--ccEE-EEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 47 YSNMMDWGR--NNIL-AIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~--~~~~-~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.+.+++||| ++++ |++.|++|++|+++.. .... .....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~ 106 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-V 106 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-e
Confidence 488899999 3455 7789999999999874 4433 3445889999999999999999999999999999999994 5
Q ss_pred eeeecCCCcEEEEEeecCCCC--EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 123 RNLEGHDKRVATASWNHWNGH--ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
..+..|..+|.++.|-+ ... .|++|+.|.+|+.||.+...+ +..+ .....+.++..- ..+++++..++.|.+|
T Consensus 107 ~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~-~LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNP-VATL-QLPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred eeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCe-eeee-eccceeeehhcc--CceeEEEecCCcEEEE
Confidence 66777999999999987 554 899999999999999997665 3333 234556666543 4588889999999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC--eEEEEEecCC----------CeEEE
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG--TCIHSVDTKA----------QICGL 268 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~----------~v~~~ 268 (364)
+++++....... ...-.-.++|++..++.... +.|+ -+|.+.+..+..+ +.-.+++.+. .|.++
T Consensus 182 nL~n~~te~k~~-~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 182 NLENPPTEFKRI-ESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EcCCCcchhhhh-cCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 997653311111 11123457899988887655 4444 8999999999876 3233333321 37789
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 328 (364)
+|+|....|++.++ ||...+||-.....+.+.+.|..+|++..|+.+|.++|-+
T Consensus 258 ~FhP~hgtlvTaGs------DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGS------DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EeecccceEEEecC------CceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999888887754 9999999999999999999999999999999999988665
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=211.50 Aligned_cols=286 Identities=18% Similarity=0.274 Sum_probs=231.4
Q ss_pred CeEEEEECCCCceeeeeeecCC-CCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGE-DDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
..+.+||+.+|.... ++++. ...-.++..- .+.+++++. ....|.+|.+..........--.++|.+++-+| .|
T Consensus 18 ~~~~~~dl~TGt~~~--~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G 93 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLL--QYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSN-LG 93 (476)
T ss_pred cceeEEecCCCceeE--EecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCC-Cc
Confidence 469999999997533 33232 1111112111 235677665 345799999876655554444678899999999 99
Q ss_pred CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------CCCcceEEecc
Q 040533 143 HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM------SSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~ 216 (364)
.+|+.|+..|.+++|.+.++.. +..+.+|-..|+++.|+.||.+|++|+.||.|.+|++... ...++++.+..
T Consensus 94 ~~l~ag~i~g~lYlWelssG~L-L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGIL-LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred eEEEeecccCcEEEEEeccccH-HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 9999999999999999998874 6667899999999999999999999999999999986431 24567889999
Q ss_pred cccceeEEEEccCC-CcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEe
Q 040533 217 HRAAVKALAWCPYQ-FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 217 ~~~~v~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~ 295 (364)
|.-+|+++...+.+ ...+++++ .|.++++||+..+..+.++..+..+.+++.+|.+..+++|.. +|.|.+.
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~------~G~I~~~ 244 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTAS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE------EGKIFQN 244 (476)
T ss_pred CcceeEEEEecCCCccceEEEec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC------cceEEee
Confidence 99999999987753 34566655 899999999999999999999999999999999999999965 9999988
Q ss_pred eCCC----------------Cceeeecccccc--ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceee
Q 040533 296 KYPH----------------MTKWGELQHQTS--RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLS 357 (364)
Q Consensus 296 d~~~----------------~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~ 357 (364)
++.. +..+..+.+|.+ .|+|++++-||..|++|+.||.|+|||+.+.+.++++....++|+-
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccce
Confidence 8743 234455678887 9999999999999999999999999999999999988877899999
Q ss_pred eeeccC
Q 040533 358 LKVSPI 363 (364)
Q Consensus 358 ~~~sp~ 363 (364)
+.+.|.
T Consensus 325 L~i~~~ 330 (476)
T KOG0646|consen 325 LQINPL 330 (476)
T ss_pred eEeecc
Confidence 998653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-29 Score=209.91 Aligned_cols=285 Identities=14% Similarity=0.178 Sum_probs=214.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE-EEEecCCcEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
+++.+.|+.|++||..+++....+. .+ ..+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 4566779999999999888655443 33 346789999999876 5667789999999999888777765443 56789
Q ss_pred eecCCCCEEEE-eeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCCCCcceEEe
Q 040533 137 WNHWNGHILTS-GSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN-LVHVWDHSKMSSSKCLHRF 214 (364)
Q Consensus 137 ~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~ 214 (364)
|+| +++.+++ ++.++.+++||+++.+. +..+. +...+.+++|+|++++++++..++ .+..||.++.. .....
T Consensus 80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~ 153 (300)
T TIGR03866 80 LHP-NGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNV 153 (300)
T ss_pred ECC-CCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEE
Confidence 999 7776654 55689999999987553 33333 234468899999999999988765 46778976532 23222
Q ss_pred cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CCeEEEEEcCCccceeeeccCCcc
Q 040533 215 RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 215 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
. .......++|+|++..+++++. .++.|++||+++++.+..+... .....++|+|++++++++.
T Consensus 154 ~-~~~~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~----- 225 (300)
T TIGR03866 154 L-VDQRPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL----- 225 (300)
T ss_pred E-cCCCccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc-----
Confidence 2 2334578999999977766654 6899999999999887766422 1235688999999866543
Q ss_pred CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE-eCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA-AADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
..++.+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+++.+..+... ...++++|+|
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 226789999999888776553 34578999999999999886 46899999999999988888754 5669999987
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-30 Score=200.45 Aligned_cols=287 Identities=15% Similarity=0.259 Sum_probs=235.8
Q ss_pred CCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec----
Q 040533 41 NLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA---- 116 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~---- 116 (364)
++.+.++-.+.+-...-+-+++.|.+..||.++++.+. .++.+|.+.|++++|++.+.++++++.|++.+||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL--~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL--ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccce--eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 34444443333322222445667899999999999974 455699999999999999999999999999999962
Q ss_pred --CC------------------------------c----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 117 --ET------------------------------S----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 117 --~~------------------------------~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.. + .++..+.+|...|.+..|.. .++.+++++.|.+..+||++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVE 302 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceeeeec
Confidence 10 0 12345778999999999998 99999999999999999999
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
++.. +..+.+|....+.++-+|..+++++.+.|.+.++||++. ....+..|++|...|+++.|..+. -+++|+
T Consensus 303 tge~-v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd--~vVSgS-- 375 (481)
T KOG0300|consen 303 TGEV-VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD--RVVSGS-- 375 (481)
T ss_pred cCce-eccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC--ceeecC--
Confidence 8874 788999999999999999999999999999999999984 346688899999999999999875 455654
Q ss_pred CCCeEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee----eccccccceeE
Q 040533 241 QDGCIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG----ELQHQTSRILE 315 (364)
Q Consensus 241 ~d~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~i~~ 315 (364)
.|.+|++||+++. .++.++...++++.++.+..++.++.-.. +..|++||+...+... .-++|...|+|
T Consensus 376 DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD------NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD------NRQVRLFDLNGNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC------CceEEEEecCCCccccCCcccccccceeeee
Confidence 9999999999985 56788999999999999999999988754 8899999997544322 34589999999
Q ss_pred EeecCCCC--EEEEEeCCCcEEEEEeeCCC
Q 040533 316 LSQSPDGL--TVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 316 i~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 343 (364)
++|..+-. -|++++-|..+.=|++..+.
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeccccCcccccccccccceeeeeEecccC
Confidence 99986543 48899999999999988654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-29 Score=221.44 Aligned_cols=245 Identities=17% Similarity=0.240 Sum_probs=184.0
Q ss_pred eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCcc--------eeeeeecCCCcEE
Q 040533 63 LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETSK--------LIRNLEGHDKRVA 133 (364)
Q Consensus 63 ~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~v~ 133 (364)
..+.|.+|+..... .+..+.+|.+.|.+++|+|+ +++||+|+.||.|+|||+.++. .+..+.+|...|.
T Consensus 52 ~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 52 LIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred ceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 45688899876543 45566799999999999996 7899999999999999997642 2346788999999
Q ss_pred EEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 134 TASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 134 ~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
+++|+| ++. +|++++.|++|++||++++.. ...+. |...|.+++|+|+|.+|++++.|+.|++||+++. ..+.
T Consensus 130 sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg---~~i~ 203 (568)
T PTZ00420 130 IIDWNP-MNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ---EIAS 203 (568)
T ss_pred EEEECC-CCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC---cEEE
Confidence 999999 555 567999999999999997764 33343 5678999999999999999999999999998875 3467
Q ss_pred EecccccceeEE-----EEccCCCcEEEeecC-CCCCeEEEEECCC-CeEEEEEecCCCe---EEEEEcCCccceeeecc
Q 040533 213 RFRDHRAAVKAL-----AWCPYQFNVLASGGG-TQDGCIKIWNVQK-GTCIHSVDTKAQI---CGLEWNRHHKEILSGHG 282 (364)
Q Consensus 213 ~~~~~~~~v~~~-----~~~~~~~~~~~~~~g-~~d~~i~i~d~~~-~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~ 282 (364)
.+.+|.+.+... .|++++..++++|.. ..+++|++||+++ ++++..+..+... ......++|.++++|.+
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 788887765432 345777666666530 0125899999995 5666665544332 23333445777777755
Q ss_pred CCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCC
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDG 322 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~ 322 (364)
|+.|++|++..+. +..+. .+..++.+++|.|..
T Consensus 284 ------D~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 ------DGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ------CCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 9999999997764 22222 255678899999964
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-28 Score=183.05 Aligned_cols=264 Identities=18% Similarity=0.341 Sum_probs=213.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC------cc---------eeeeeecCCCcEEEEEeecCCCCEEEEee
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET------SK---------LIRNLEGHDKRVATASWNHWNGHILTSGS 149 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~------~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 149 (364)
.....|.+++|+|.|.+.|+|+...+.+|..... +. ..+.-+.|.+.|.|.+|+| .++++++|+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecC
Confidence 4567899999999999999999999988875421 10 1122345889999999999 999999999
Q ss_pred CCCcEEEEEcccCcc----eeeeeecccCcEEEEEEcCC----CCEEEEEe-CCCeEEEEeCCCCCCCcceEEecccccc
Q 040533 150 QDKSIINHDVRVSNN----VTSRINAHTAEVCGLKWSNE----GNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRDHRAA 220 (364)
Q Consensus 150 ~dg~i~~~d~~~~~~----~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 220 (364)
.|.+|++.-++.... .-..+..|.+.|..++|-.+ +.+|++++ .|..|++-|...+ +..+.+.+|.+-
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g---~~~~a~sghtgh 185 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG---QGFHALSGHTGH 185 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC---CcceeecCCccc
Confidence 999999976654321 12356679999999999653 45777765 4667787786554 558888999998
Q ss_pred eeEEE-EccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CCeEEEEEcCCccceeeeccCCccCCCCe
Q 040533 221 VKALA-WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQICGLEWNRHHKEILSGHGFSSSGDGQK 291 (364)
Q Consensus 221 v~~~~-~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (364)
|.++- |+ + .++++|+ .|.+|++||++-..++.++... +.|.+++..|.|++|++|.. |..
T Consensus 186 ilalyswn--~-~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~------dss 254 (350)
T KOG0641|consen 186 ILALYSWN--G-AMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA------DSS 254 (350)
T ss_pred EEEEEEec--C-cEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC------CCc
Confidence 87763 43 2 7888876 9999999999999888887531 56899999999999999976 999
Q ss_pred EEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC----CcceeccCCceeeeeeccC
Q 040533 292 LCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG----SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~v~~~~~sp~ 363 (364)
..+||++.++.++.+..|...|.++.|+|...|+++++.|..|++-|+...-. .-....|.+.+..+.|+|.
T Consensus 255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 99999999999999999999999999999999999999999999999875321 2234478999999999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=209.73 Aligned_cols=263 Identities=14% Similarity=0.296 Sum_probs=221.1
Q ss_pred eeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 81 LKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..+..++.+|.+.|..+++. ...+++++.|.+|+.|.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~---~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT---QTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec---ccceEEecCCcceeeeec
Confidence 3456999999999999976 789999999999999999999999999999999999994 477889999999999998
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
+.. +...+.+ ...+..+.-+..+..+++++++ |.|||.+.. .++..+.-....|.++.|+|-...+|++++
T Consensus 137 ~~~--p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~- 207 (433)
T KOG0268|consen 137 DGP--PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCA- 207 (433)
T ss_pred cCC--cceeeec-cccccccccccccccccccCce--eeecccccC---CccceeecCCCceeEEecCCCcchheeeec-
Confidence 753 3444433 4556777777777889999865 999997653 457777767788999999999999999987
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEee
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQ 318 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~ 318 (364)
.|+.|.+||++.+.+++.+.....-+.++|+|.+-.+.++ ++|..++.||++.. .++....+|.+.|.+++|
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a------~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAA------NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred -cCCceEEEecccCCccceeeeeccccceecCccccceeec------cccccceehhhhhhcccchhhcccceeEEEecc
Confidence 8999999999999999999888889999999966555555 56999999999864 566778899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeCCCCCcceec-cCCceeeeeecc
Q 040533 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDFVS-HLDGLLSLKVSP 362 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~sp 362 (364)
||.|+-+++||.|.+|+||.+..+.....+.. --..|.+|.||-
T Consensus 281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM 325 (433)
T ss_pred CCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec
Confidence 99999999999999999999988766544432 234588888874
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=224.37 Aligned_cols=253 Identities=28% Similarity=0.436 Sum_probs=222.6
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee-eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
+...+.+..|. ..++++++.+++|++||..++..+.. +.+|.+.|.++++.. .+++|++|+.|.++++||..++.+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcE
Confidence 56678888887 56899999999999999999998888 999999999999976 799999999999999999888875
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
...+.+|...+.++...+ ..+++|+.|.+|++|++.++ ..+..+.+|.++|.++..+ + .++++|+ .|++
T Consensus 284 -~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~---~~l~l~~~h~~~V~~v~~~--~-~~lvsgs--~d~~ 352 (537)
T KOG0274|consen 284 -THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG---ACLNLLRGHTGPVNCVQLD--E-PLLVSGS--YDGT 352 (537)
T ss_pred -EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc---ceEEEeccccccEEEEEec--C-CEEEEEe--cCce
Confidence 778889999999987654 47888999999999998864 5588888899999999998 3 5677765 8999
Q ss_pred EEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEeecCCC
Q 040533 245 IKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
|++||..+++++.++..+ ..|.++.+.+. ..++.|.. |+.|++||+.+. +++..+.+|.+-+..+.+ .+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~------D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL------DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee------ccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence 999999999999999765 77999988776 77777744 999999999999 999999999998877766 67
Q ss_pred CEEEEEeCCCcEEEEEeeCCCCCcceec-cCCceeeeeec
Q 040533 323 LTVVSAAADETLRFWEAFGPSGSGDFVS-HLDGLLSLKVS 361 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s 361 (364)
++|++++.||+|++||..+++.+.++.+ |...|..+++.
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 7999999999999999999999999988 67889888874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=195.35 Aligned_cols=257 Identities=15% Similarity=0.221 Sum_probs=208.1
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
.++.|.++.|+|.++.|++++.||.+++||+........+. |..++.+++|. +...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeecc--CCceEEEeccCceEEEEEecCCc--
Confidence 36789999999999999999999999999999887776766 89999999998 57789999999999999999877
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
...+..|..+|.|+.+++....+++|+.|++|++||.+... ....+. ....|.++....+ .|++ |+ .|..+
T Consensus 87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~---~~~~~d-~~kkVy~~~v~g~--~LvV-g~--~~r~v 157 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV---VVGTFD-QGKKVYCMDVSGN--RLVV-GT--SDRKV 157 (323)
T ss_pred ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc---cccccc-cCceEEEEeccCC--EEEE-ee--cCceE
Confidence 45577899999999999988899999999999999988522 233322 3447888877642 4444 33 79999
Q ss_pred EEEECCCCeEEEEE---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC----ceeeeccccc--------
Q 040533 246 KIWNVQKGTCIHSV---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM----TKWGELQHQT-------- 310 (364)
Q Consensus 246 ~i~d~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~-------- 310 (364)
.+||+++.....+. ...-++.+++.-|++.-.++++. +|.|.+=.++.. +.-..++.|.
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi------eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI------EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee------cceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 99999987654432 23456899999997776666644 999988777655 3334455553
Q ss_pred -cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 311 -SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 311 -~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
-+|.+|+|+|--..||||+.||.|.+||+.+.+.+..+......|.+++|+-
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 3799999999999999999999999999999999999988778899998874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=191.43 Aligned_cols=264 Identities=16% Similarity=0.208 Sum_probs=209.2
Q ss_pred eeecccCCC--ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGR--NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+..+.|+| +.++++++||.+++||....+....+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~---~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF---KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe---ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 366777776 46999999999999999988654443 6789999999996 4578899999999999999887654
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+..|..+|.|+.+++ ....+++|+.|++|++||.+.... ...+ .....|.++..+ ++.|++|+.+..+.+||+++
T Consensus 90 igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~-~~~~-d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVV-VGTF-DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccc-cccc-ccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 455999999999999 888999999999999999986432 2223 233478887765 66899999999999999998
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC----eEEEEEecC----------CCeEEEEE
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG----TCIHSVDTK----------AQICGLEW 270 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~----------~~v~~~~~ 270 (364)
...... ..-..-.-.++++++.|++..++++. -||.|.+=.+... +....++.| -+|++++|
T Consensus 165 ~~~~~q-~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 165 LDEPFQ-RRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred ccchhh-hccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 765331 12223456789999999776666643 7999988766654 222333332 36899999
Q ss_pred cCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC
Q 040533 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 330 (364)
+|-...+++|.. ||.|.+||+.+.+.+.++......|.+++|+.+|..||+++.
T Consensus 241 hp~~~tfaTgGs------DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HPIHGTFATGGS------DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccccceEEecCC------CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999998855 999999999999999999888788999999999999999864
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=212.09 Aligned_cols=256 Identities=23% Similarity=0.413 Sum_probs=215.7
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec
Q 040533 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA 171 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 171 (364)
-+.|+ ..+.||+|. ...|++|+..+++.......+...|+++.|++ +|.+|++|..+|.|.|||....+. ...+..
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~ 257 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKK-TRTLRG 257 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccc-cccccC
Confidence 35666 455788775 55899999999987766666689999999999 999999999999999999987765 455556
Q ss_pred -ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 172 -HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 172 -~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
|...|-+++|+ +..+.+|+.|+.|..+|++..+.. ...+.+|...|..++|++++ ..+++|+ .|+.+.|||.
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~--~~~~~~H~qeVCgLkws~d~-~~lASGg--nDN~~~Iwd~ 330 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV--VSTLQGHRQEVCGLKWSPDG-NQLASGG--NDNVVFIWDG 330 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh--hhhhhcccceeeeeEECCCC-CeeccCC--CccceEeccC
Confidence 99999999998 568999999999999999976542 22478899999999999999 6788877 9999999999
Q ss_pred CCCeEEEEE-ecCCCeEEEEEcCCc-cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE
Q 040533 251 QKGTCIHSV-DTKAQICGLEWNRHH-KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 251 ~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 328 (364)
....+...+ ++...|.+++|+|-. ..||+|.+ ..|+.|++||..++..+..+.. .+.|.+|.|++..+-|+++
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG----s~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG----SADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLST 405 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCccCceEEcCC----CcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEe
Confidence 777766666 456889999999964 55666655 5599999999999999988864 4679999999998766664
Q ss_pred --eCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 329 --AADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 329 --~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..++.|.||++.+.+.+..+.+|...|..+++||.
T Consensus 406 hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 406 HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence 45778999999999999999999999999999995
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=202.22 Aligned_cols=276 Identities=20% Similarity=0.306 Sum_probs=225.7
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCcee-ee-------------eee--cCCCCCceEEEEcCCCCEEEEEecCC
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQ-KL-------------LKV--TGEDDFPTSISWSQDAKTLAVGYMAS 109 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~-~~-------------~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg 109 (364)
+.+++.+++ ..+.++.+++|.-|+..+++.. .+ ... .+|...+.+++.|+||++||+|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 677777776 6888999999999999887632 11 111 27888999999999999999999999
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEE
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
.|.||+.++.+.++.+.+|.+.|.+++|-. ..+.|++++.|+.|++|+++... .+.++.+|.+.|.++.-..-++.+-
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL~reR~vt 302 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDALSRERCVT 302 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechhcccceEE
Confidence 999999999999999999999999999988 78889999999999999998665 4778889999999999888888888
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--------
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-------- 261 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------- 261 (364)
+|+.|+++++|++... ....+.++.+.+.|++|-.+. -+++|+ .+|.|.+|++.+.+++.+...
T Consensus 303 VGgrDrT~rlwKi~ee----sqlifrg~~~sidcv~~In~~--HfvsGS--dnG~IaLWs~~KKkplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEE----SQLIFRGGEGSIDCVAFINDE--HFVSGS--DNGSIALWSLLKKKPLFTSRLAHGVIPEL 374 (479)
T ss_pred eccccceeEEEecccc----ceeeeeCCCCCeeeEEEeccc--ceeecc--CCceEEEeeecccCceeEeeccccccCCc
Confidence 8889999999998432 244566788899999998764 455654 999999999999988877632
Q ss_pred -----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC----ceeeeccccccceeEEeecCCCCEEEEE-eCC
Q 040533 262 -----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM----TKWGELQHQTSRILELSQSPDGLTVVSA-AAD 331 (364)
Q Consensus 262 -----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d 331 (364)
+..|++++..|...++++|.. +|.|++|.+..+ +++..+. -.+.|++++|+++|+.|++| +..
T Consensus 375 ~~~~~~~Witsla~i~~sdL~asGS~------~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 375 DPVNGNFWITSLAVIPGSDLLASGSW------SGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred cccccccceeeeEecccCceEEecCC------CCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccc
Confidence 126899999999999998855 999999998776 3444444 45789999999999966555 555
Q ss_pred CcEEEEEee
Q 040533 332 ETLRFWEAF 340 (364)
Q Consensus 332 g~i~vw~~~ 340 (364)
..+--|-..
T Consensus 448 hRlGRW~~~ 456 (479)
T KOG0299|consen 448 HRLGRWWCL 456 (479)
T ss_pred cccceeeEe
Confidence 556555443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=206.05 Aligned_cols=242 Identities=23% Similarity=0.455 Sum_probs=196.8
Q ss_pred eecccCCCc--cEEEE-EeCCeEEEEECCCC--------ceeeeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEe
Q 040533 48 SNMMDWGRN--NILAI-ALGLELYLWKQENG--------EVQKLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWD 115 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~-~~~~~i~iw~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~ 115 (364)
++.+..-|+ .++|. +..+.|+|||..+. +..+...+.+|...=++++|++.. -.|++|+.|+.|++||
T Consensus 127 VnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwd 206 (422)
T KOG0264|consen 127 VNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWD 206 (422)
T ss_pred chhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEe
Confidence 444444443 35554 45689999997643 333445777999988999999854 4788999999999999
Q ss_pred cCCcc-------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc-CcceeeeeecccCcEEEEEEcC-CCC
Q 040533 116 AETSK-------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV-SNNVTSRINAHTAEVCGLKWSN-EGN 186 (364)
Q Consensus 116 ~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~ 186 (364)
+.... ....+.+|...|..++|+|.+.++|++++.|+.+.|||+++ ..+......+|.++|+|++|+| ++.
T Consensus 207 i~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ 286 (422)
T KOG0264|consen 207 INAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEF 286 (422)
T ss_pred ccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCc
Confidence 97542 34567889999999999999999999999999999999996 3344667789999999999999 677
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-----------
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC----------- 255 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----------- 255 (364)
.||+|+.|++|.+||+|+.. +++..+.+|...|..+.|+|....++++++ .|+.+.+||+..-..
T Consensus 287 ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda~dgp 362 (422)
T KOG0264|consen 287 ILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDAEDGP 362 (422)
T ss_pred eEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhhccCC
Confidence 99999999999999999875 478999999999999999999999999987 999999999965211
Q ss_pred ---EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 256 ---IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 256 ---~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
+.... +...|..+.|+|....+++.. ++|+.+.||.+.
T Consensus 363 pEllF~HgGH~~kV~DfsWnp~ePW~I~Sv-----aeDN~LqIW~~s 404 (422)
T KOG0264|consen 363 PELLFIHGGHTAKVSDFSWNPNEPWTIASV-----AEDNILQIWQMA 404 (422)
T ss_pred cceeEEecCcccccccccCCCCCCeEEEEe-----cCCceEEEeecc
Confidence 12222 235699999999999988754 679999999976
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=202.40 Aligned_cols=277 Identities=12% Similarity=0.219 Sum_probs=216.4
Q ss_pred eecccCCCcc---EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
+.+++-+|+. +++++.||.|++||+...++.. .+..|.+.|..+++.. ..+++++.|.+|+.|.++. ..+.+
T Consensus 69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~--~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~t 143 (433)
T KOG0268|consen 69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR--TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHT 143 (433)
T ss_pred cchhhcCcchhhhhhccccCceEEEEehhhhhhhh--eeecccCceeeEEecc--cceEEecCCcceeeeeccC-Cccee
Confidence 6677777754 6788899999999999887644 4559999999999986 5677888899999999865 46666
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 203 (364)
+. ....+..+.-+. .++.+++++++ |.|||.+-.. ++..+.--...|.++.|+|. ...|++++.|+.|.+||++
T Consensus 144 il-g~s~~~gIdh~~-~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R 218 (433)
T KOG0268|consen 144 IL-GKSVYLGIDHHR-KNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR 218 (433)
T ss_pred ee-cccccccccccc-ccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence 65 345677777766 77889988874 8999987555 46667667788999999994 4688888899999999998
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEEe-cCCCeEEEEEcCCccceeeec
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSVD-TKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 281 (364)
.... ++... ....-+.|+|+|.. +.++++. +|..++.||++.-+ ++.... +.+.|.++.|||.|+.+++|+
T Consensus 219 ~~~P---l~KVi-~~mRTN~IswnPea-fnF~~a~--ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 219 QASP---LKKVI-LTMRTNTICWNPEA-FNFVAAN--EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred cCCc---cceee-eeccccceecCccc-cceeecc--ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 7644 33332 23455789999955 6666655 99999999998743 444443 447899999999999999885
Q ss_pred cCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcc
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD 347 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 347 (364)
- |.+|+||..+.+.....+. .-.+.|.++.||.|.+|+++||.|+.|++|.....+.+..
T Consensus 292 y------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 292 Y------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred c------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 4 9999999998765544332 1236799999999999999999999999999877665543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=220.45 Aligned_cols=288 Identities=20% Similarity=0.362 Sum_probs=227.6
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeec--C---CCCCceEEEEcC-CCCEEEEEecCCcEEEEecCC--
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVT--G---EDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAET-- 118 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~--~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~-- 118 (364)
.++++-.++ .-++++....+.+|.+............ . -...+..+.|+. +.++||+++.+|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 344555554 3455556677888877654332222111 1 122455778875 568999999999999999987
Q ss_pred -cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCe
Q 040533 119 -SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNL 196 (364)
Q Consensus 119 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 196 (364)
.+.+..+..|...++++.|++...++|++|+.||.|++||++.... ...+.+....|..+.|+| .+..++++.+.|.
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccchhhhceeeccCCCceEEEecCCce
Confidence 5677788999999999999998899999999999999999998775 556667888999999999 6789999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC--eEEEEEecCCCeEEEEEcCCc
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG--TCIHSVDTKAQICGLEWNRHH 274 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~~ 274 (364)
+.+||+|... ++...+.+|.++|.++.|+|++ .++|+|| .|+.|+|||+.+. +...++....++..+.|-|..
T Consensus 201 lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhPnr-~~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~ 275 (839)
T KOG0269|consen 201 LQLWDLRQPD--RCEKKLTAHNGPVLCLNWHPNR-EWLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPAR 275 (839)
T ss_pred EEEeeccCch--hHHHHhhcccCceEEEeecCCC-ceeeecC--CCccEEEEeccCCCccceeEEeecceeeeeeeccCc
Confidence 9999999764 5677888999999999999955 7899987 9999999999865 445667778999999999998
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEeecC-CCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQSP-DGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
++.++... ...|-.|+|||++.. -+...+..|...++.++|.. |-..|.+++.||+|..-.+++...
T Consensus 276 ~~hLAtcs---mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 276 SYHLATCS---MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred cchhhhhh---ccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 87665432 234889999999754 45667888999999999966 445789999999987766665543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=208.27 Aligned_cols=272 Identities=15% Similarity=0.234 Sum_probs=208.0
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc----eeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK----LIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
..+++|...|.++++.|.|-.|++|+.|-.|++||+.... ..+.+. .....|.+++|++ +++.|++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCccee
Confidence 4566889999999999999999999999999999997542 222222 2345799999999 888888888888999
Q ss_pred EEEcccCccee------------eeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecc---ccc
Q 040533 156 NHDVRVSNNVT------------SRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRD---HRA 219 (364)
Q Consensus 156 ~~d~~~~~~~~------------~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~ 219 (364)
++|-.... .. ...++|...++|.+|+|.. ..+++++.||++++||+.+......+...+. ..-
T Consensus 240 l~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 99865322 22 2345799999999999954 5899999999999999987654333333222 234
Q ss_pred ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEE-e-c--CCCeEEEEEcCCccceeeeccCCccCCCCeEE
Q 040533 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSV-D-T--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~-~-~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 293 (364)
+++.++|+|+++. +++|. .||.|.+|+..+.... ..+ + | +..|+++.||++|++|++-+ .|+.++
T Consensus 319 ~~tsC~~nrdg~~-iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg------~D~tLK 389 (641)
T KOG0772|consen 319 PVTSCAWNRDGKL-IAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG------FDDTLK 389 (641)
T ss_pred CceeeecCCCcch-hhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc------CCCcee
Confidence 6889999999965 66655 8999999998654322 112 1 2 24799999999999999874 499999
Q ss_pred EeeCCCCc-eeeecccc--ccceeEEeecCCCCEEEEEe------CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 294 LWKYPHMT-KWGELQHQ--TSRILELSQSPDGLTVVSAA------ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 294 i~d~~~~~-~~~~~~~~--~~~i~~i~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+||++..+ ++....+- ..+-+.++|||+.++|++|+ ..|++.+||..+...+..+.-....|..+.|+|.
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 99998754 44443332 23457899999999999985 3578999999998888887777888999999985
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=215.31 Aligned_cols=277 Identities=15% Similarity=0.227 Sum_probs=226.5
Q ss_pred cEEEEEeCCeEEEEECCCCceeee-----------------------------------eeecCCCCCceEEEEcCCCCE
Q 040533 57 NILAIALGLELYLWKQENGEVQKL-----------------------------------LKVTGEDDFPTSISWSQDAKT 101 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~s~~~~~ 101 (364)
-+++++.|++|++|++..+....+ ...-+....+.+++.||+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 378889999999999876221110 001123456899999999999
Q ss_pred EEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecC--CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEE
Q 040533 102 LAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW--NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179 (364)
Q Consensus 102 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~ 179 (364)
||+|..-|+++||++.+-+....+..|...|.|+.|+.. ..++|++++.|..|.+||+...-.+...+.+|...|+++
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 999999999999999999999999999999999999742 347899999999999999987777788899999999999
Q ss_pred EEcCCC--CEEEEEeCCCeEEEEeCCCCCCCcceE--EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 180 KWSNEG--NLLASGGDDNLVHVWDHSKMSSSKCLH--RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 180 ~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.|-.+| ..+++++.|..|.+--.++...+.... +-......++.++..|..+ ++++++ .|..|+|||+.+++.
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~c--QDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVC--QDRNIRIFDIESGKQ 630 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEe--cccceEEEeccccce
Confidence 998877 688999999877654333222211110 0011234688999999885 455554 899999999999999
Q ss_pred EEEEec----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC
Q 040533 256 IHSVDT----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 256 ~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
.+.++. .+....+...|.|.|+++... |.++.++|..+++++.++.+|...|+.+.|.+|.+.|++.+.|
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScs------dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCS------DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeec------CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence 999964 366888999999999999865 9999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeeCC
Q 040533 332 ETLRFWEAFGP 342 (364)
Q Consensus 332 g~i~vw~~~~~ 342 (364)
|.|.||.+...
T Consensus 705 gCIFvW~lp~~ 715 (1080)
T KOG1408|consen 705 GCIFVWKLPLT 715 (1080)
T ss_pred ceEEEEECchh
Confidence 99999998653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-27 Score=175.23 Aligned_cols=284 Identities=17% Similarity=0.250 Sum_probs=217.4
Q ss_pred CCcceeecccCCCc-cEEEEEeC-CeEEEEECCC------C----c---eeeeeeecCCCCCceEEEEcCCCCEEEEEec
Q 040533 43 RNDYYSNMMDWGRN-NILAIALG-LELYLWKQEN------G----E---VQKLLKVTGEDDFPTSISWSQDAKTLAVGYM 107 (364)
Q Consensus 43 ~~~~~~~~~~~~~~-~~~~~~~~-~~i~iw~~~~------~----~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 107 (364)
.+...+.+++|+|. ++.+++++ .+++|..... + + ......-+.|.+.|+|.+|+|+|+++|+|+.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 34445889999996 57777654 5666654321 1 1 1122233478999999999999999999999
Q ss_pred CCcEEEEecCCcce-----eeeeecCCCcEEEEEeec--C-CCCEEEEee-CCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 108 ASKLQLWDAETSKL-----IRNLEGHDKRVATASWNH--W-NGHILTSGS-QDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 108 dg~i~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~--~-~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
|.+|++.-++.... -..+..|.+.|..++|.. . .+.+|++++ .|..|++-|...++. ...+.+|.+-|.+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghila 188 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHILA 188 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEEE
Confidence 99999987654322 234667999999999953 1 345666665 466777778776665 6778899999987
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 179 LKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 179 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
+ ++-++-++++|+.|.+|++||++-... +..+.. ..+.|.+++..|.| .++++|- .|....+||++
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~---v~~l~~~~~~~glessavaav~vdpsg-rll~sg~--~dssc~lydir 261 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSC---VNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGH--ADSSCMLYDIR 261 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccce---eeeccCcccCCCcccceeEEEEECCCc-ceeeecc--CCCceEEEEee
Confidence 6 455788999999999999999986543 333321 23679999999999 6888876 89999999999
Q ss_pred CCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC----ceeeeccccccceeEEeecCCCCEEE
Q 040533 252 KGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM----TKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 252 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
.++.++.+..+ ..|.++.|+|...|++++.- |..|++-|+... -++.....|...+..+.|+|..-.++
T Consensus 262 g~r~iq~f~phsadir~vrfsp~a~yllt~sy------d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY------DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred CCceeeeeCCCccceeEEEeCCCceEEEEecc------cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceee
Confidence 99999988654 77999999999999998854 999999998632 22334456888899999999998999
Q ss_pred EEeCCCcEEEEEee
Q 040533 327 SAAADETLRFWEAF 340 (364)
Q Consensus 327 ~~~~dg~i~vw~~~ 340 (364)
+.+.|.++.+|-+.
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 99999999999764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=200.31 Aligned_cols=260 Identities=17% Similarity=0.271 Sum_probs=218.9
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
..++++...|....+++|+.|..+.++|..+++.+..+++|...|+.+.|+| +...+++++.|..|++|....... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~-~~ 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSE-PT 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccC-cc
Confidence 4678888888878999999999999999999999999999999999999999 999999999999999999876664 56
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
....|..+|+.+..+|.|.||++++.|++..+.|++.+.. +..... ..-.+++.+|+||| .++.+|. .|+.|
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~---lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt--~d~~v 371 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ---LTVVSDETSDVEYTSAAFHPDG-LIFGTGT--PDGVV 371 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE---EEEEeeccccceeEEeeEcCCc-eEEeccC--CCceE
Confidence 6778999999999999999999999999999999887654 333222 23458999999999 7888866 99999
Q ss_pred EEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc-cceeEEeecCCCC
Q 040533 246 KIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-SRILELSQSPDGL 323 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~ 323 (364)
++||+.++..+..+..+ ++|..++|+.+|-+|+++. +|+.|++||++..+...++.... .++.++.|.+.|.
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a------dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA------DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe------cCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 99999999988888765 7899999999999999985 48899999999988777776433 4799999999999
Q ss_pred EEEEEeCCCcEEEEEee--CCCCCcceeccCCceeeeeec
Q 040533 324 TVVSAAADETLRFWEAF--GPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 324 ~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~v~~~~~s 361 (364)
+|+.++.|=.|++++-. +-.....+..|.+..+++.|.
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred eEEeecceeEEEEEecccccceeeehhhhcccccceeeec
Confidence 99999776555555532 334455666777778888775
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=209.87 Aligned_cols=303 Identities=15% Similarity=0.222 Sum_probs=236.1
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCCc-eeeeeeecCCCCCceEEEEcCC-----------CCEEEEEecCCcEEE
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENGE-VQKLLKVTGEDDFPTSISWSQD-----------AKTLAVGYMASKLQL 113 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~i 113 (364)
..++.|++ +.+.++-.|..++|||+..-. +-+...+-.|..-|..+.--|. ...+.+++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 34455665 457777889999999997643 2233333467777777665541 125889999999999
Q ss_pred EecCCcceeee-------------------------------------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 114 WDAETSKLIRN-------------------------------------LEGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 114 w~~~~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
|+++.+..-.. .-.....+.+++.+| ++++|++|...|.+++
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRV 485 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEE
Confidence 99975211000 011235789999999 9999999999999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC--C
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSN---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ--F 231 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~ 231 (364)
|++...+. ...+.+|+..|.|+.|+. ..++||+++.|..|.+||+... ...++++.+|...|+++.|...| .
T Consensus 486 y~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 486 YDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--YDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred EEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--cchhhhhcccccceeEEEEeecCCce
Confidence 99986664 667889999999999986 3579999999999999998653 56688899999999999998776 3
Q ss_pred cEEEeecCCCCCeEEEEECCC---CeEEEEE---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee
Q 040533 232 NVLASGGGTQDGCIKIWNVQK---GTCIHSV---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~---~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 305 (364)
.++.+| .|..|.+--.++ +.....- -.+..+..++..|..++++++.. |..|+||++.++++.+.
T Consensus 563 ~MiscG---ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ------Drnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 563 KMISCG---ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ------DRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EEEecc---CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec------ccceEEEeccccceeee
Confidence 444444 577665433332 2222111 12356899999999999999855 99999999999999999
Q ss_pred ccc---cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 306 LQH---QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 306 ~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|++ |++....+...|.|-|||+...|.++.++|+.+++.+....+|...|++|.|++.
T Consensus 634 FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 875 6677888999999999999999999999999999999999999999999999985
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=187.34 Aligned_cols=243 Identities=22% Similarity=0.389 Sum_probs=197.9
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCce-eeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCcce--e
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEV-QKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETSKL--I 122 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~--~ 122 (364)
-..+++...+++++++|+.|+|+....+.. ..+.++.+|.++|..++|.. .|.+||+++.||.|.||.-+.++- .
T Consensus 16 da~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 16 DAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA 95 (299)
T ss_pred HhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence 445777778899999999999999987655 67788999999999999986 899999999999999999887743 3
Q ss_pred eeeecCCCcEEEEEeecCC-CCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCC---C-----------
Q 040533 123 RNLEGHDKRVATASWNHWN-GHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNE---G----------- 185 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~---~----------- 185 (364)
.....|...|++++|.|.+ +-.|++++.||.|.+.+.+... ........|.-.|++++|.|. |
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 4556799999999999832 4588999999999999988662 223456689999999999995 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC---CcEEEeecCCCCCeEEEEECCCCeE--EEEE-
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ---FNVLASGGGTQDGCIKIWNVQKGTC--IHSV- 259 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~- 259 (364)
+.|++|+.|..|+||+.... ......++.+|.+.|+.++|.|.- ...+++++ +||++.||..+.... ..++
T Consensus 176 krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll 252 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLL 252 (299)
T ss_pred ceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCccccccc
Confidence 57999999999999998875 345556689999999999999964 45677876 999999998763211 1111
Q ss_pred -ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 260 -DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 260 -~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
+....+..+.||..|..|+++.+ |+.+.+|.-..
T Consensus 253 ~~f~~~~w~vSWS~sGn~LaVs~G------dNkvtlwke~~ 287 (299)
T KOG1332|consen 253 EEFPDVVWRVSWSLSGNILAVSGG------DNKVTLWKENV 287 (299)
T ss_pred ccCCcceEEEEEeccccEEEEecC------CcEEEEEEeCC
Confidence 23466999999999999999866 99999997543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=214.09 Aligned_cols=259 Identities=16% Similarity=0.258 Sum_probs=215.0
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.|....+.++|.|+|.+|++++.||.|++|+.... +....+..+...|.+++- ...+|++|+.+++|.+|.+.++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCCC
Confidence 67888999999999999999999999999997766 555555558888988887 66799999999999999998776
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
. -..+....-++.+++|+.+|+++|.|+.|-.|++.++..... ...+++|.++|.++.|+|.+. ++++.+ -||
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~---~~~lrgh~apVl~l~~~p~~~-fLAvss--~dG 160 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ---EKVLRGHDAPVLQLSYDPKGN-FLAVSS--CDG 160 (933)
T ss_pred c-cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch---heeecccCCceeeeeEcCCCC-EEEEEe--cCc
Confidence 4 334555678899999999999999999999999999876544 778899999999999999995 555544 699
Q ss_pred eEEEEECCCCeEEEEEec---------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccc
Q 040533 244 CIKIWNVQKGTCIHSVDT---------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSR 312 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~ 312 (364)
.|++||+.++.+..++.. ...+..++|+|+|..+++... ++.|++|+..+++....+.. +...
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~------d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV------DNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc------CCeEEEEccCCceeheeecccccccc
Confidence 999999999887776642 234678999999766665543 99999999999998888764 4455
Q ss_pred eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 313 ILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 313 i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+..++|+|+|+|||+++.||.|.|||+++-.. ......|.+++|-|.
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPN 281 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCC
Confidence 89999999999999999999999999998322 223567899999874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=199.46 Aligned_cols=267 Identities=18% Similarity=0.263 Sum_probs=218.8
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee----e-------------e-ecCCCcEEEEEeecCCC
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR----N-------------L-EGHDKRVATASWNHWNG 142 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~~ 142 (364)
.....|.-+|.+++++|+..+.++++.+|+|.=|++.+++..+ . - +.|...+.+++.++ ++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dg 214 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DG 214 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CC
Confidence 3455899999999999999999999999999999998876431 0 1 26778899999999 99
Q ss_pred CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 143 HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 143 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
++|++|+.|..|.||+.++.+. +..+.+|.+.|.+++|-.....+++++.|+.|++|++... ..+.++.+|.+.|.
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~---s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL---SYVETLYGHQDGVL 290 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhHh---HHHHHHhCCcccee
Confidence 9999999999999999998886 6678999999999999988889999999999999997764 34778889999999
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
++....-+ .++.+|+ .|+++++|++.....+-...+.+.+-+++|-.+..+ ++| +++|.|.+|++.+.++
T Consensus 291 ~IdaL~re-R~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~~Hf-vsG------SdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 291 GIDALSRE-RCVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHF-VSG------SDNGSIALWSLLKKKP 360 (479)
T ss_pred eechhccc-ceEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecccce-eec------cCCceEEEeeecccCc
Confidence 99877655 5666665 899999999965544444445568888888766554 444 5699999999999888
Q ss_pred eeecc-cc-----------ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC----CcceeccCCceeeeeeccC
Q 040533 303 WGELQ-HQ-----------TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG----SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 303 ~~~~~-~~-----------~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~v~~~~~sp~ 363 (364)
+...+ +| ...|++++..|...++|+|+.+|.|++|.+..+.. +..+. -.+.|++|+|++.
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNS 436 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccC
Confidence 87654 12 12799999999999999999999999999998843 22222 4678999998864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=214.00 Aligned_cols=243 Identities=20% Similarity=0.308 Sum_probs=208.6
Q ss_pred EEEEc-CCCCEEEEEecCCcEEEEecCCcc------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc-
Q 040533 92 SISWS-QDAKTLAVGYMASKLQLWDAETSK------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN- 163 (364)
Q Consensus 92 ~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~- 163 (364)
.+..+ |.+++|++|+.||.|++|+..... .+..++.|...|+.+.... +++.|++++.|-+|++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcc
Confidence 34443 467789999999999999986432 3667888999999999887 88999999999999999998764
Q ss_pred ceeeeeecccCcEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCCC-------CcceEEec-ccccceeEEEEccCCCcEE
Q 040533 164 NVTSRINAHTAEVCGLKW-SNEGNLLASGGDDNLVHVWDHSKMSS-------SKCLHRFR-DHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 234 (364)
.....+..|.+.|.|+++ -++..++|+|+-|+.|.+||++.+.. ......+. ++...|++++.++.+ .++
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~i 186 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TII 186 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEE
Confidence 446778899999999999 77888999999999999999986522 11222333 678899999999988 788
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI 313 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 313 (364)
++|+ .++.+++||.++++.+..+.++ ..|..+..+++|..+++++. ||+|++||+...+++.++..|...|
T Consensus 187 vsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS------DgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 187 VSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS------DGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred EecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC------CceEEeeeccccceeeeEEeccCce
Confidence 8876 8999999999999988888765 67999999999999999855 9999999999999999999999999
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
.++..+|+-..+++|+.||.|..=|+.+...
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 9999999999999999999999999988644
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=208.28 Aligned_cols=269 Identities=20% Similarity=0.339 Sum_probs=222.0
Q ss_pred ecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceE-EEEcC-CCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 49 NMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTS-ISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
..++..++ -+++++.|+++++|+-..++......+.+|.+.|.+ +++-+ ++-.+++|+.|+.|.+|......+...+
T Consensus 18 r~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L 97 (745)
T KOG0301|consen 18 RAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL 97 (745)
T ss_pred heeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh
Confidence 33333344 377788899999999988887777777788888877 88875 4556999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+|...|.+++... ++. +++||.|.++++|.... +...+.+|+..|.+++.-|++ .+++|+.|.+|++|.-
T Consensus 98 kgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--- 168 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--- 168 (745)
T ss_pred hccccceeeeecCC-cCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---
Confidence 99999999998764 444 99999999999998642 355688999999999999987 8999999999999983
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
.+.++++.+|.+.|+.+++-+++ .++.++ .||.|++|++ +++++..+. +.+-+.++....++..++++
T Consensus 169 --~~~l~tf~gHtD~VRgL~vl~~~-~flScs---NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~---- 237 (745)
T KOG0301|consen 169 --GTLLKTFSGHTDCVRGLAVLDDS-HFLSCS---NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST---- 237 (745)
T ss_pred --CchhhhhccchhheeeeEEecCC-CeEeec---CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe----
Confidence 35688999999999999999986 455443 7999999999 566666554 45779999988888887776
Q ss_pred ccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
++|++++||+.. ++.+.+......|+++.+-++|. +++|++||.||||.....
T Consensus 238 --gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 238 --GEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred --cCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 569999999977 66777766667899999988885 778899999999987743
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=215.53 Aligned_cols=239 Identities=15% Similarity=0.260 Sum_probs=190.8
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCC--------------------------------Cc----------------
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQEN--------------------------------GE---------------- 76 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~--------------------------------~~---------------- 76 (364)
.+-++.||+++ ++++|.|+.|+||.+.. ..
T Consensus 269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~ 348 (712)
T KOG0283|consen 269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV 348 (712)
T ss_pred cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence 36677888864 66778899999998765 00
Q ss_pred ----------eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEE
Q 040533 77 ----------VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILT 146 (364)
Q Consensus 77 ----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 146 (364)
..++..+.||.+.|.++.||.+ ++|++++.|.+|++|++...++++.|. |..-|+|++|+|.|.++|+
T Consensus 349 ~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFi 426 (712)
T KOG0283|consen 349 LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFI 426 (712)
T ss_pred cCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEe
Confidence 0122345689999999999965 589999999999999999999999998 9999999999999999999
Q ss_pred EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc------cccc
Q 040533 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD------HRAA 220 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~ 220 (364)
+|+-||.|+||++...+ +.....-..-|++++|.|+|+..++|+.+|.+++|+....+... -..+.. ....
T Consensus 427 SGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~-~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 427 SGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS-DFHIRLHNKKKKQGKR 503 (712)
T ss_pred ecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE-eeeEeeccCccccCce
Confidence 99999999999997554 44444555889999999999999999999999999987643211 111111 1237
Q ss_pred eeEEEEccCCCc-EEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 221 VKALAWCPYQFN-VLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 221 v~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
|+.+.|.|.... +|++. .|..|+|||.++..++..+++. ..-....|+.+|++++++ ++|..|++|+
T Consensus 504 ITG~Q~~p~~~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~------seDs~VYiW~ 574 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA------SEDSWVYIWK 574 (712)
T ss_pred eeeeEecCCCCCeEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe------ecCceEEEEe
Confidence 999999987665 66654 6999999999988888777643 335667899999999998 4599999999
Q ss_pred CCC
Q 040533 297 YPH 299 (364)
Q Consensus 297 ~~~ 299 (364)
+..
T Consensus 575 ~~~ 577 (712)
T KOG0283|consen 575 NDS 577 (712)
T ss_pred CCC
Confidence 743
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=186.74 Aligned_cols=253 Identities=21% Similarity=0.315 Sum_probs=199.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc---ceeeeeecCCCcEEEEEe-ecCCCCEEEEeeCCCcEEEEEcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIRNLEGHDKRVATASW-NHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.|++.|.++...-.|++||+++.|++|+|+..... +++.++.+|.++|..++| +|.-|.+|++++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 78999999998889999999999999999998765 467889999999999999 57779999999999999999987
Q ss_pred cCcc-eeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccC---C----
Q 040533 161 VSNN-VTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY---Q---- 230 (364)
Q Consensus 161 ~~~~-~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~---- 230 (364)
+++- .......|...|++++|.|. |-.|++++.||.|.+.+.+.............|.-.|++++|.|. |
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence 6641 13345679999999999994 568999999999999998875333344555679999999999986 3
Q ss_pred ------CcEEEeecCCCCCeEEEEECCCCeE--EEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-
Q 040533 231 ------FNVLASGGGTQDGCIKIWNVQKGTC--IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM- 300 (364)
Q Consensus 231 ------~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~- 300 (364)
..-|++|+ .|+.|+||+..+++- .+++.. ...|+.++|.|.-.+.-.. ++++++||.+.||-....
T Consensus 169 ~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~--iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST--IASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee--eEEecCCCcEEEEEecCcc
Confidence 13478877 899999999988632 233443 4669999999976432221 334577999999987632
Q ss_pred ce--eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 301 TK--WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 301 ~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
++ ...+......+..+.||+.|.+|+.++.|+.|.+|.-..
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 11 112333457799999999999999999999999998553
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=209.35 Aligned_cols=272 Identities=16% Similarity=0.313 Sum_probs=226.4
Q ss_pred EEEEEeCCeEEEEECCCCce----eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--ceeeeeecCCCc
Q 040533 58 ILAIALGLELYLWKQENGEV----QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--KLIRNLEGHDKR 131 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~ 131 (364)
+++++.||.|++|+...... .....++.|.+.|..+....+++.|++++.|-+|++|+...+ -+..++..|...
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY 119 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY 119 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence 89999999999999865433 135566789999999999999999999999999999999877 567788899999
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---------eeeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNN---------VTSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
|.|++.-..+..++|+|+-|+.|.+||++++.. ....+. ++..+|.+++.++.|..+++|+..+.+++||
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 999999433899999999999999999996622 111222 7888999999999999999999999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 280 (364)
.++.. .+..+++|...|..+..+++|..++.++ .||+|++||+...+++.++..+ ..+.++..+|+-..+++|
T Consensus 200 prt~~---kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 200 PRTCK---KIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred ccccc---ceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec
Confidence 87754 4888899999999999999997766643 6999999999999999998655 559999999999999988
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.. |+.|+.=|+++......+-....+|..+..+...+-+-+++.|+.|+-|....
T Consensus 274 ~r------d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 274 GR------DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred CC------CCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 55 99999999988654444444556777787776555557778899999997654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=188.17 Aligned_cols=282 Identities=13% Similarity=0.256 Sum_probs=228.4
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL 145 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 145 (364)
.|..|...+-.......+.+|.+.|..++-......+.+++.|.+.+||.+++++++.++.+|.+.|+++.|++ .+.++
T Consensus 127 ivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~ 205 (481)
T KOG0300|consen 127 IVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLL 205 (481)
T ss_pred heeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceE
Confidence 33344433333444556779999999999888788999999999999999999999999999999999999999 99999
Q ss_pred EEeeCCCcEEEEEc------ccC---------------------------------cceeeeeecccCcEEEEEEcCCCC
Q 040533 146 TSGSQDKSIINHDV------RVS---------------------------------NNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 146 ~~~~~dg~i~~~d~------~~~---------------------------------~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
++++.|++..||.. ... ..++..+.+|...|.+..|-..|+
T Consensus 206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 99999999999962 110 023456778999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecC-CC
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTK-AQ 264 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~ 264 (364)
.+++++.|.+..+||++++ .++..+.+|....+.++-+|.. .++++.+ .|.+.++||++.. ..+..++++ ..
T Consensus 286 Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQ-rLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQ-RLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred eeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcc-eEEEEec--cCceeEeccchhhcceeeeecccccc
Confidence 9999999999999998875 4588899999999999999987 6777766 8999999999853 234455554 67
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc-eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT-KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
|++..|..+.+.+ +| ++|.+|++||+++.+ ++.+++ ..+++..++.+..+..++.--.+..|++||+....
T Consensus 360 VTS~vF~~dd~vV-Sg------SDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 360 VTSVVFNTDDRVV-SG------SDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eeEEEEecCCcee-ec------CCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 9999998876644 33 669999999998754 455554 45788999999888899998888999999998765
Q ss_pred CCc----ceeccCCceeeeeecc
Q 040533 344 GSG----DFVSHLDGLLSLKVSP 362 (364)
Q Consensus 344 ~~~----~~~~~~~~v~~~~~sp 362 (364)
... .-.+|...|.|++|..
T Consensus 432 laRlPrtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 432 LARLPRTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred cccCCcccccccceeeeeeeccc
Confidence 432 2348999999999973
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=197.42 Aligned_cols=276 Identities=18% Similarity=0.254 Sum_probs=220.5
Q ss_pred eecccCCC-ccEEEEEeCCeEEEEECCCCce-eeeee--ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee-
Q 040533 48 SNMMDWGR-NNILAIALGLELYLWKQENGEV-QKLLK--VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI- 122 (364)
Q Consensus 48 ~~~~~~~~-~~~~~~~~~~~i~iw~~~~~~~-~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~- 122 (364)
+.++..+. .+.+-.+..|.|+|||+..... ..+.. +......|.++.+.|||+.|++|++-.++.|||+......
T Consensus 422 VcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri 501 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI 501 (705)
T ss_pred EEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch
Confidence 44455544 4455556679999999875422 11222 2234678999999999999999999999999999765433
Q ss_pred -eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 123 -RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 123 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
..+........+++.+| +.++.+++..||.|.|||+.+.. ++..+++|.+.+.|+..+++|..|-+|+-|.+|+.||
T Consensus 502 kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 502 KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence 33443445677889999 99999999999999999998554 6889999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
++.+.. +... ...+.|.++..+|.+..+++ |- .++.+.+......+..+...+.+-|.++.|.+.|+++++.
T Consensus 580 lregrq---lqqh-dF~SQIfSLg~cP~~dWlav-GM--ens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt- 651 (705)
T KOG0639|consen 580 LREGRQ---LQQH-DFSSQIFSLGYCPTGDWLAV-GM--ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST- 651 (705)
T ss_pred hhhhhh---hhhh-hhhhhheecccCCCccceee-ec--ccCcEEEEecCCccceeecccccEEEEEEecccCceeeec-
Confidence 987543 2221 23578999999999965554 43 7889999888766655555667889999999999999887
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+.|+.+..|...-|..+.+.+. .+.|.++.+|.|.++++||+.|....||.+
T Consensus 652 -----GkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 652 -----GKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -----CchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4599999999999988887764 467999999999999999999999888876
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=194.86 Aligned_cols=292 Identities=14% Similarity=0.177 Sum_probs=224.0
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE--ecCCcEEEEecCCcc---eeeeeecCCCc
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG--YMASKLQLWDAETSK---LIRNLEGHDKR 131 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~---~~~~~~~~~~~ 131 (364)
++.+++....+++||+...+....+.-......+.++.|+.... |+++ +.|..+++|.-. |+ ....-......
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~ 81 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDN 81 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEeccc-CCCCccceeeccccch
Confidence 46777888899999998766544333222234488999987654 5444 357788898643 33 22111111223
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcce
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 211 (364)
-.|++... ...++++|+..+.|+|||++ .+.+.+.+.+|...|+++.++....+||+++..|.|.+..+.+... .
T Consensus 82 ~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~---t 156 (673)
T KOG4378|consen 82 AFCVACAS-QSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK---T 156 (673)
T ss_pred HHHHhhhh-cceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc---c
Confidence 34444444 45799999999999999999 4556788899999999999999999999999999999999877544 3
Q ss_pred EEeccc-ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE--ecCCCeEEEEEcCCccceeeeccCCccCC
Q 040533 212 HRFRDH-RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV--DTKAQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 212 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
..+... ...|+-+.|+|..+.+|.+++ .+|.|.+||+....++..+ .+..+...++|+|....|++..+ .
T Consensus 157 t~f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-----~ 229 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-----Y 229 (673)
T ss_pred cceecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-----c
Confidence 333322 345678999999999999987 9999999999887777655 35578899999999988887654 4
Q ss_pred CCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC-CCcceeccCCceeeeeeccC
Q 040533 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS-GSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 289 ~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~v~~~~~sp~ 363 (364)
|..|.+||.........+. ...+...++|+++|.+|+.|+..|.|..||++..+ ++.++..|...|++++|-|.
T Consensus 230 Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 9999999998766665554 34678999999999999999999999999998654 56777799999999999875
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=198.69 Aligned_cols=278 Identities=19% Similarity=0.279 Sum_probs=209.3
Q ss_pred cEEEEE-eCCeEEEEECCCCcee----eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee--eecCC
Q 040533 57 NILAIA-LGLELYLWKQENGEVQ----KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN--LEGHD 129 (364)
Q Consensus 57 ~~~~~~-~~~~i~iw~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~ 129 (364)
.+|+++ .+|.|.++|....... ++.....|...|..+.|.|....|++++.|.++++||+++.++... +.+|.
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 466666 5799999998765433 2334458999999999999667899999999999999999988876 88999
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc--------------------------eeeeeecccCcEEE---EE
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN--------------------------VTSRINAHTAEVCG---LK 180 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------------------------~~~~~~~~~~~v~~---~~ 180 (364)
..|.+++|.|.+...|++|+.||.|.|||++.... ......++...|.+ +.
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 99999999998999999999999999999874320 01111233444444 45
Q ss_pred EcCCCCEEEEEeC-CCeEEEEeCCCCCCC-----cceEEeccc---ccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 181 WSNEGNLLASGGD-DNLVHVWDHSKMSSS-----KCLHRFRDH---RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 181 ~~~~~~~l~~~~~-d~~i~iwd~~~~~~~-----~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
+..|...||+++. |+.|++||+++.... .....+..| .-.+.++..+..|.++++++ .|+.|++||+.
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm~ 301 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNMR 301 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEecc
Confidence 5567789999887 999999999975331 112222223 33577888888889999987 49999999998
Q ss_pred CCe--EEEEEecC---CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeeccccccceeEEeecCCC-CE
Q 040533 252 KGT--CIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQHQTSRILELSQSPDG-LT 324 (364)
Q Consensus 252 ~~~--~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~-~~ 324 (364)
+.. ++..+.+. ..-..-..+|++.++++|.. |...++|.+.+.+. ...+.+|...|++++|.|.. .-
T Consensus 302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs------d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS------DEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP 375 (720)
T ss_pred ccCcCchhhccCcccceeeeeeecCCCCceEeccCC------CcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC
Confidence 643 23333222 11233467899999999865 99999999987654 45677999999999998843 34
Q ss_pred EEEEeCCCcEEEEEeeCCC
Q 040533 325 VVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 325 l~~~~~dg~i~vw~~~~~~ 343 (364)
+++++.|..+++|++..+-
T Consensus 376 v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 376 VATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ceeeccCcceEEEeccCch
Confidence 7778999999999996653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=187.23 Aligned_cols=224 Identities=25% Similarity=0.497 Sum_probs=181.4
Q ss_pred ccEEEEE--eCCeEEEEECCC--------------CceeeeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCC
Q 040533 56 NNILAIA--LGLELYLWKQEN--------------GEVQKLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAET 118 (364)
Q Consensus 56 ~~~~~~~--~~~~i~iw~~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~ 118 (364)
+..++++ ..|.|+||++.. .+..+++++.+|...=+.++|||-. ..|++|.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 4455554 468999999752 2345677888999999999999932 3588888888999999988
Q ss_pred ccee---eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCC
Q 040533 119 SKLI---RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 119 ~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
+... ..+.+|...|-.++|+|.....|++|+.||+|+|||++.+. ......+.|.+.|+.++|+....+||+|+.|
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 7543 34567999999999999888999999999999999999873 2233447899999999999988899999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-------------------E
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-------------------C 255 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-------------------~ 255 (364)
|+++|||+|..+..+++..++-|..+|+++.|+|.....+++++ .|.+|.+||+.... +
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQL 401 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQL 401 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccccchhcCCcee
Confidence 99999999999988999999999999999999999888888876 89999999985321 1
Q ss_pred EEEEecCCCeEEEEEcCCccceeeec
Q 040533 256 IHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
+.....+..+..+.|+++-.-+++.+
T Consensus 402 LFVHqGQke~KevhWH~QiPG~lvsT 427 (440)
T KOG0302|consen 402 LFVHQGQKEVKEVHWHRQIPGLLVST 427 (440)
T ss_pred EEEecchhHhhhheeccCCCCeEEEe
Confidence 22223345678888988776665543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-25 Score=181.95 Aligned_cols=294 Identities=15% Similarity=0.201 Sum_probs=228.5
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCCceeeeeee-c-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENGEVQKLLKV-T-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~~~~~~-~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
+....|+| .+++.....+.+++|+.+++.+.+...+ + ..+..|.|++|.++|+ +++|.++|.|.||+..+.+..+
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k 281 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISK 281 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEe
Confidence 45567777 4688888889999999998876544332 1 2247899999999987 7899999999999998888877
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
....|++.|.+++... +|.+| +|+.|..|..||-.-.......+....++|..++=... -|+.|...+.|..=.+.
T Consensus 282 ~~~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG--DILVGTTRNFILQGTLE 357 (626)
T ss_pred EeeecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCC--cEEEeeccceEEEeeec
Confidence 7779999999999987 67655 59999999999943222222334455677887764332 37778777777665555
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccC
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
+.- .....+|......++.+|+.+. +++++ .|+.+++|+ ..+++.+.....+..++.|+|.| .+++|..
T Consensus 358 ~~f----~~~v~gh~delwgla~hps~~q-~~T~g--qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~- 426 (626)
T KOG2106|consen 358 NGF----TLTVQGHGDELWGLATHPSKNQ-LLTCG--QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTA- 426 (626)
T ss_pred CCc----eEEEEecccceeeEEcCCChhh-eeecc--CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeec-
Confidence 432 3445678889999999998854 55554 899999999 67777777788999999999999 8888865
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee--ccCCceeeeeec
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV--SHLDGLLSLKVS 361 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~s 361 (364)
.|...+.|.++...+..-.. ..+++.++|+|+|.+||.|+.|+.|++|.+.......... -+..+|+.+.||
T Consensus 427 -----~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 427 -----TGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred -----cceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 89999999999666555444 7899999999999999999999999999998766543332 345899999999
Q ss_pred cC
Q 040533 362 PI 363 (364)
Q Consensus 362 p~ 363 (364)
+.
T Consensus 501 ~D 502 (626)
T KOG2106|consen 501 SD 502 (626)
T ss_pred CC
Confidence 85
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=179.50 Aligned_cols=241 Identities=18% Similarity=0.331 Sum_probs=200.3
Q ss_pred EEEEEecCCcEEEEecCCc------------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee
Q 040533 101 TLAVGYMASKLQLWDAETS------------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 168 (364)
.+++|++...|.=+++.-. ..+..+..|.+++++++. ++.++++|+.|-+|+|||++...+ ...
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~q-lg~ 78 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQ-LGI 78 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhh-hcc
Confidence 3567777766666665321 124556789999999999 899999999999999999997765 666
Q ss_pred eecccCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 169 INAHTAEVCGLKWSNEGN--LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
+..|.+.|+++.|.+.-. .|++|+.||.|.+|+... ...+..+++|.+.|+.++.+|.++.-+..+ .|+.++
T Consensus 79 ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr 152 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---WELLKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLR 152 (362)
T ss_pred eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---eEEeeeecccccccceeEecCCCceEEEEc---CCceee
Confidence 778999999999998654 899999999999999655 467999999999999999999996555555 599999
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
.||+-+|+.-.........+.+.|+|.|.+++.+. .+.|-+|.+.+.....++... ..+.++.|. ++..|+
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~-------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~ 223 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG-------RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELL 223 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEe-------ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEE
Confidence 99999999888877777777799999999777664 788999999888777766544 456677775 567899
Q ss_pred EEeCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 327 SAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
+|+.|+.|.+||..+......+.+|...|-++.+
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred EecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 9999999999999998889999999999988873
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=175.90 Aligned_cols=265 Identities=19% Similarity=0.303 Sum_probs=202.0
Q ss_pred CCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCcce----------ee-----eeecCCCcEEEEEeecCCCCEEEEe
Q 040533 85 GEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKL----------IR-----NLEGHDKRVATASWNHWNGHILTSG 148 (364)
Q Consensus 85 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~----------~~-----~~~~~~~~v~~~~~~~~~~~~l~~~ 148 (364)
.|.+.|+++...+ .|+++++|+.||.|.+||++.... +. .-.+|.-.|..+.|-|.+..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6889999999988 689999999999999999975421 11 1134778899999999889999999
Q ss_pred eCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEE
Q 040533 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 225 (364)
+.|.++++||..+.+. ...+ ..++.|.+-+++| ...++|+|..|-.|++.|+..+ ...+.+.+|.+.|.++.
T Consensus 121 SFDhtlKVWDtnTlQ~-a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---s~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQE-AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---SFSHTLSGHRDGVLAVE 195 (397)
T ss_pred cccceEEEeeccccee-eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---cceeeeccccCceEEEE
Confidence 9999999999988764 3333 3567788888888 3458889999999999998775 45889999999999999
Q ss_pred EccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEe---------------cCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 226 WCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVD---------------TKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 226 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
|+|..++++++|+ .||.|++||++.. .+...++ +.+.+..++|+.++.++++... |
T Consensus 196 Wsp~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt------d 267 (397)
T KOG4283|consen 196 WSPSSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT------D 267 (397)
T ss_pred eccCceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC------c
Confidence 9999999999987 9999999999864 3443332 2356899999999999988744 9
Q ss_pred CeEEEeeCCCCceeeecc---ccccc---eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 290 QKLCLWKYPHMTKWGELQ---HQTSR---ILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~---~~~~~---i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..+++|+..+|+....-- .|... -..+. +.+...++---.++.+.++.+-++..+..+.+|...|.+.++.|.
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPD 346 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCc
Confidence 999999998775432211 11111 01122 223333443445578888888888888888888777887777663
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=206.18 Aligned_cols=224 Identities=18% Similarity=0.384 Sum_probs=185.8
Q ss_pred eeecccCCC--cc-EEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGR--NN-ILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~--~~-~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
.++.+.|+. .+ +++++..|.|.+||+... +...+..+..|+..++++.|++. ..+|++|+.||.|++||++..+-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 366788885 24 455667899999999862 22334456699999999999984 56899999999999999999998
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
..++.+..+.|+.+.|+|..++.|+++...|.+.+||++........+.+|.++|.|+.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 88999889999999999988999999999999999999998888888999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecC-CCeEEEEEcC
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTK-AQICGLEWNR 272 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~v~~~~~~~ 272 (364)
...... +...++. ...+|..+.|-|...+.|++++--.|-.|+|||++.. -+..++..+ ..++.++|..
T Consensus 249 ~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 249 MTDSRA-KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCCCc-cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 876443 3344443 3578999999999999999876446889999999864 344555444 5678888876
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=188.18 Aligned_cols=284 Identities=13% Similarity=0.179 Sum_probs=215.6
Q ss_pred eeecccCCCc---cEEEEE-eCCeEEEEECCCCc--eeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCc
Q 040533 47 YSNMMDWGRN---NILAIA-LGLELYLWKQENGE--VQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 47 ~~~~~~~~~~---~~~~~~-~~~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~ 119 (364)
.+.+++|+|. .+++++ ..|.|-+||+.+.+ ......+..|..+|.++.|+|. ...+++.+.||+|++-|++.+
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence 3688999993 355544 56899999995332 2334455689999999999994 467888899999999999876
Q ss_pred ceee--eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCe
Q 040533 120 KLIR--NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNL 196 (364)
Q Consensus 120 ~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 196 (364)
..-. ........+..+.|+. +...++.+..=|...+||+++++.....+..|...|..++++| ...+|++++.|++
T Consensus 268 i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 268 ISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred hhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 4333 3333455677888888 6666666776679999999998876777888999999999999 4568999999999
Q ss_pred EEEEeCCCCCCCc-ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC----CCCeEEEEEecCC------Ce
Q 040533 197 VHVWDHSKMSSSK-CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV----QKGTCIHSVDTKA------QI 265 (364)
Q Consensus 197 i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~----~~~~~~~~~~~~~------~v 265 (364)
++|||+|...... ++.....|...|.+..|+|.+..++.++ .|..|+|||. ....+..++.|.. ..
T Consensus 347 ~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~ 423 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTP 423 (498)
T ss_pred eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccccc
Confidence 9999999876544 3444557999999999999998866654 7999999998 3445556665542 24
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc-ceeE-EeecCCCCEEEEE-eCCCcEEEEEee
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS-RILE-LSQSPDGLTVVSA-AADETLRFWEAF 340 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~-i~~~~~~~~l~~~-~~dg~i~vw~~~ 340 (364)
....|.|+..++++|.. -..|-|+|-..++.+.++..... .|.+ ..|+|-+..+++| +..|.|+||--+
T Consensus 424 fKA~W~P~~~li~vg~~------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 424 FKAAWDPDYNLIVVGRY------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred hhheeCCCccEEEEecc------CcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 56789999999998864 67799999988887877654433 4444 4899988745554 567888888543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=177.23 Aligned_cols=282 Identities=14% Similarity=0.233 Sum_probs=214.1
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
..++.|++. .++.++.+|.|.|||+.+....+.+ .+|..+|++++||+||+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l--saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML--SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh--hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 667778874 3555668999999999998765444 489999999999999999999999999999999999999988
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec---ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA---HTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
. ...+|+.+.|+|.+.+..++.-.+..-.+-++..+......... .+....+..|.+.|+++++|...|.+.++|.
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 8 77899999999966666666655555555555432211111100 1112233468899999999999999999997
Q ss_pred CCCCCCcceEEecccc-cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-------eEE--EEE---ecCCCeEEEE
Q 040533 203 SKMSSSKCLHRFRDHR-AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-------TCI--HSV---DTKAQICGLE 269 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------~~~--~~~---~~~~~v~~~~ 269 (364)
.+. +++..++-.. ..|..+.++..|+.++.-. .|..|+.|+++.- ++. +.+ -...+-.+++
T Consensus 183 ~t~---e~vas~rits~~~IK~I~~s~~g~~liiNt---sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 183 ETL---ECVASFRITSVQAIKQIIVSRKGRFLIINT---SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred chh---eeeeeeeechheeeeEEEEeccCcEEEEec---CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 764 4466655444 6788999999997666643 6999999998631 111 111 1234567889
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc-cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-SRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
|+.+|.|+++++ .....++||....|..++.+.+.. .....+.|+|-...+++- ..|.+++|.....+.
T Consensus 257 fs~dgeYv~a~s-----~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 257 FSGDGEYVCAGS-----ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred ecCCccEEEecc-----ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 999999999886 347889999999999999998877 567889999998888887 678999999876543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=186.80 Aligned_cols=263 Identities=16% Similarity=0.281 Sum_probs=215.5
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCC--cceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCc
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAET--SKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~ 163 (364)
.+.|+++.|+|..+.|++|+.||+++||.++. ...++.+.-...+|.+.+|.| +|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 56799999999999999999999999998863 345666666678999999999 777 99999999999999998765
Q ss_pred ce-eeeeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 164 NV-TSRINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 164 ~~-~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
.. +....++. ..+..+..++++++|+..+..|.|.+.-..+. +.+..++ -++.|..++|+.+++.++++++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~---eli~s~K-ieG~v~~~~fsSdsk~l~~~~~--- 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK---ELITSFK-IEGVVSDFTFSSDSKELLASGG--- 364 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh---hhhheee-eccEEeeEEEecCCcEEEEEcC---
Confidence 21 22233333 45677889999999999999999999886554 3355554 4688999999999988888875
Q ss_pred CCeEEEEECCCCeEEEEEecCCCe--EEEEEcCCccceeeeccCCccCCCCeEEEeeCCC------Cceeeeccccccce
Q 040533 242 DGCIKIWNVQKGTCIHSVDTKAQI--CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH------MTKWGELQHQTSRI 313 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i 313 (364)
+|.|.+||++...+++.+...+.+ ++++.++++.++++|+ +.|.|.|||.++ .+++..+..-...|
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc------CcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 899999999999999998776665 6678889999999984 599999999753 57777777777889
Q ss_pred eEEeecCCCCEEEEEeC--CCcEEEEEeeCCCCCcceec---cCCceeeeeeccC
Q 040533 314 LELSQSPDGLTVVSAAA--DETLRFWEAFGPSGSGDFVS---HLDGLLSLKVSPI 363 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~---~~~~v~~~~~sp~ 363 (364)
++++|++|+++||.+|. +..+++-.+.+......+.. .-+.|+||+|||.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence 99999999999988874 67899999988877666653 3456899999994
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=184.63 Aligned_cols=282 Identities=17% Similarity=0.242 Sum_probs=223.4
Q ss_pred cceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcce
Q 040533 45 DYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~ 121 (364)
.-.++++.|+|.. +++++.|+.++||.+.......+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3357889999964 7888899999999987665444444444577899999999998 888888888999999998765
Q ss_pred ee--eeecCC-CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 122 IR--NLEGHD-KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 122 ~~--~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
.+ ...++. ..+.....+| ++++|+..+..|.|.+....+++. +..+ .-++.|..++|+.+++.|++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~el-i~s~-KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKEL-ITSF-KIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhh-hhee-eeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 43 233333 3567778889 999999999999999999887764 4434 3467899999999999999999999999
Q ss_pred EEeCCCCCCCcceEEecccccce--eEEEEccCCCcEEEeecCCCCCeEEEEECCC------CeEEEEEe-cCCCeEEEE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAV--KALAWCPYQFNVLASGGGTQDGCIKIWNVQK------GTCIHSVD-TKAQICGLE 269 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~------~~~~~~~~-~~~~v~~~~ 269 (364)
+||++.. .+++++.. .+.| ++++.++++ .++++|+ ..|.|.|||..+ .+++..+. ....|+++.
T Consensus 370 v~nl~~~---~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS--~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 370 VWNLRQN---SCLHRFVD-DGSVHGTSLCISLNG-SYLATGS--DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred EEecCCc---ceEEEEee-cCccceeeeeecCCC-ceEEecc--CcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 9999875 45776654 3334 466777888 4788866 999999999754 34444443 346799999
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc---ccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ---TSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|+++.+.|+.++. ..++.+++-.+++......+... -+.|+|++|||.+.+||.|..+|.+.+|.+.
T Consensus 443 Fn~d~qiLAiaS~----~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 443 FNHDAQILAIASR----VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eCcchhhhhhhhh----ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999998765 44889999999988877776543 3568999999999999999999999999875
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=174.07 Aligned_cols=277 Identities=18% Similarity=0.279 Sum_probs=203.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceee--eeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCc---
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQK--LLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETS--- 119 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~--- 119 (364)
+++++|+.+ .+++++.|+.|++|++..-.... .+...-.-+-.+.+.|+||.+-++... ...++++|.+...
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 677888775 48888999999999987643211 111111223578899999988666554 4457999986432
Q ss_pred ceeee---------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEE
Q 040533 120 KLIRN---------LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLAS 190 (364)
Q Consensus 120 ~~~~~---------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (364)
..... -+.|.-.+..+-..- ++.+|++++.|..|.+|+++ ++ .+..+......-...+.||+|+++++
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aavSP~GRFia~ 245 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAVSPDGRFIAV 245 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceeeCCCCcEEEE
Confidence 11111 122455566666655 88999999999999999998 44 46666555566677889999999999
Q ss_pred EeCCCeEEEEeCCCCC-----CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-------eEEEE
Q 040533 191 GGDDNLVHVWDHSKMS-----SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-------TCIHS 258 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------~~~~~ 258 (364)
++..-.|++|.+--.. ....+..+++|.+.|..++|+++...+ ++.+ .||++++||+.-. +.++.
T Consensus 246 ~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~-vtvS--kDG~wriwdtdVrY~~~qDpk~Lk~ 322 (420)
T KOG2096|consen 246 SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRA-VTVS--KDGKWRIWDTDVRYEAGQDPKILKE 322 (420)
T ss_pred ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCccee-EEEe--cCCcEEEeeccceEecCCCchHhhc
Confidence 9999999999864222 223466788999999999999998655 4544 8999999998531 11222
Q ss_pred E-----ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCC
Q 040533 259 V-----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 259 ~-----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
. ...+....++.+|.|+.|++.. ...+.+|..++++...+++ .|...|.+|+|+++|+++++++ |.
T Consensus 323 g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 323 GSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred CCcchhhcCCCceEEEeCCCCcEEEeec-------CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 1 1124455899999999999876 7889999999998887775 5889999999999999999987 56
Q ss_pred cEEEEE
Q 040533 333 TLRFWE 338 (364)
Q Consensus 333 ~i~vw~ 338 (364)
.++++.
T Consensus 395 ~vrv~~ 400 (420)
T KOG2096|consen 395 YVRVIR 400 (420)
T ss_pred eeeeec
Confidence 777775
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=195.97 Aligned_cols=256 Identities=20% Similarity=0.333 Sum_probs=211.2
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--eeecCCCcEEE-EEeecCCCCEEEEeeCCCcEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NLEGHDKRVAT-ASWNHWNGHILTSGSQDKSIINH 157 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~~~ 157 (364)
..+.+|...|..++..+ +..+++++.||++++|+-..++.+. .+.+|.+-|.. +++.+.++..+++|+.|..+.+|
T Consensus 8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 45669999999998775 4478999999999999976655443 46667777777 88876466779999999999999
Q ss_pred EcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 158 DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 158 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
.+.+..+ ...+.+|+..|++++...++. +++|+.|.++++|-... ....+.+|+..|++++.-|++ .+++|
T Consensus 87 ~~~~~~P-~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~--~~vTg 157 (745)
T KOG0301|consen 87 KLSQAEP-LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-----LVYSLQGHTASVWAVASLPEN--TYVTG 157 (745)
T ss_pred ecCCCCc-hhhhhccccceeeeecCCcCc-eEecccccceEEecchh-----hhcccCCcchheeeeeecCCC--cEEec
Confidence 9987765 788999999999999877776 99999999999998543 356689999999999999986 66776
Q ss_pred cCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEE
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
+ .|.+|++|.- ++.++++..| ..|+.+++-+++.++-++ .||.|++|++ +++.+.++.+|.+.|+++
T Consensus 158 s--aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScs-------NDg~Ir~w~~-~ge~l~~~~ghtn~vYsi 225 (745)
T KOG0301|consen 158 S--ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCS-------NDGSIRLWDL-DGEVLLEMHGHTNFVYSI 225 (745)
T ss_pred c--CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeec-------CCceEEEEec-cCceeeeeeccceEEEEE
Confidence 5 8999999975 7778888766 669999999887776554 4999999999 899999999999999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
....++..++++++|++++||+.. +..+.+....-.|+++.+
T Consensus 226 s~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 226 SMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred EecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 988888899999999999999977 444444444446666654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=196.90 Aligned_cols=271 Identities=16% Similarity=0.241 Sum_probs=212.6
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+.|.++ .+++++.|+.|++|+.... +...... .+...|.+++. ++.+|++|+.+++|.+|.+.+++.-..
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEee--cccceEEeeccceEEEeeCCCCCccce
Confidence 445566554 4778889999999997665 3222222 36777777775 456999999999999999998877666
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+....-++++++|+- +|++++.|+.|-.|++-++..... ...+.+|.++|.++.|+|++++||+.+-||.|++||+.+
T Consensus 92 L~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred eeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 666778899999999 999999999999999999987765 677889999999999999999999999999999999987
Q ss_pred CCCCcceEEeccc-----ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccc
Q 040533 205 MSSSKCLHRFRDH-----RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKE 276 (364)
Q Consensus 205 ~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~ 276 (364)
......+..+... ...+..++|+|++..+++.+ .|+.|.+|+..++.....+... ..+..++|+|.|+|
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 5443222222211 34567899999987888776 5999999999999888777532 44899999999999
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
|+++.. +|.|.|||.++... ......|.+++|.|++.-+-.-...|...+|
T Consensus 247 iAAs~~------~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTL------DGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred Eeeecc------CCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 999865 99999999988322 2234679999999998766554444544444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=177.86 Aligned_cols=262 Identities=19% Similarity=0.251 Sum_probs=197.2
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 169 (364)
..|+.|++.|.+||+|+.||.|.|||+.+....+.+.+|..+|.+++|++ +|+.|++++.|..|.+||+..+.. ...+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~-l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSP-LKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCc-eeEE
Confidence 68999999999999999999999999999998899999999999999999 999999999999999999998874 4433
Q ss_pred ecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEec-c-cccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 170 NAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFR-D-HRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
...++|....|+|.. +..++.-.+..-.+-++..+.. ..+..-. + .+..-.+..|.+.|+++++ |+..|.+.
T Consensus 104 -rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIit---GtsKGkll 178 (405)
T KOG1273|consen 104 -RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIIT---GTSKGKLL 178 (405)
T ss_pred -EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEE---ecCcceEE
Confidence 467899999999933 3333333333344555443211 1111000 0 0111223458888865555 34799999
Q ss_pred EEECCCCeEEEEEecC--CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC---------ceeeeccc--cccce
Q 040533 247 IWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM---------TKWGELQH--QTSRI 313 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~---------~~~~~~~~--~~~~i 313 (364)
++|..+.+++..+... ..|..+.++..|+.++.... |..|+.|++..- ++..+++. ..-.-
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts------DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS------DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecC------CceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 9999999999887654 57999999999999998755 999999998631 11122221 12234
Q ss_pred eEEeecCCCCEEEEEeC-CCcEEEEEeeCCCCCcceeccC-CceeeeeeccCC
Q 040533 314 LELSQSPDGLTVVSAAA-DETLRFWEAFGPSGSGDFVSHL-DGLLSLKVSPIR 364 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~-~~v~~~~~sp~~ 364 (364)
.+++|+.+|.|++.++. -..++||.-..+..++.+.|.. ....++.|+|.|
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce
Confidence 57899999999988874 4569999999999999998766 568899999976
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=207.23 Aligned_cols=247 Identities=21% Similarity=0.442 Sum_probs=217.0
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCC
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH 143 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (364)
.-.+++||.+. ...|...+.++..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.++.|++ ...
T Consensus 13 ~t~Lr~~~~~~--------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~ 83 (825)
T KOG0267|consen 13 ATKLRVWDTRE--------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SER 83 (825)
T ss_pred eeccccccchh--------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chh
Confidence 44566777532 236788899998877889999999999999999988777778999999999999999 999
Q ss_pred EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 144 ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 144 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
+|++|+.+|+|++||++... .+..+.+|...+.++.|+|-+.+.+.|+.|+.+.+||.+.. .+.+.+.+|...+..
T Consensus 84 LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~---Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 84 LLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK---GCSHTYKSHTRVVDV 159 (825)
T ss_pred hhcccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhcc---CceeeecCCcceeEE
Confidence 99999999999999999666 46788899999999999999999999999999999998864 458888999999999
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
+.|+|+| .+++.++ .|..+++||+..|+....|. +...+..+.|+|..-+++.|.. |+.+++||+++.+.
T Consensus 160 l~lsP~G-r~v~~g~--ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~------d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 160 LRLSPDG-RWVASGG--EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS------DRTVRFWDLETFEV 230 (825)
T ss_pred EeecCCC-ceeeccC--CcceeeeecccccccccccccccccccccccCchhhhhccCCC------CceeeeeccceeEE
Confidence 9999999 5677765 79999999999999999998 5588999999999888888754 99999999999999
Q ss_pred eeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 303 WGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 303 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
+.........|.+.+|+|++..+++|..+.
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCchhh
Confidence 988888888999999999999998886553
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=186.99 Aligned_cols=272 Identities=17% Similarity=0.214 Sum_probs=211.0
Q ss_pred ecCCCCCceEEEEcCCC--CEEEEEecCCcEEEEecCCc----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 83 VTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
..-+..+|++++|+|.. +++|+|...|.|-+||+.+. ..+..+..|..+|.++.|+|.+...+++.+.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 33578899999999955 58899999999999999522 3345677899999999999988899999999999999
Q ss_pred EEcccCcc-eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 157 HDVRVSNN-VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 157 ~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
-|++.... .+.........+..+.|+.+...++.+..=|...+||++.... ....+.-|...|.+++++|..+++++
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc--cchhhhhhhcccceeecCCCCchhee
Confidence 99986542 1122222445677888988888888888888999999998654 24445567889999999999999999
Q ss_pred eecCCCCCeEEEEECCCCe-----EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC----CCCceeeec
Q 040533 236 SGGGTQDGCIKIWNVQKGT-----CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY----PHMTKWGEL 306 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~----~~~~~~~~~ 306 (364)
+++ .|++.+|||++.-. .+..+.+...|.+..|||.+..|++... |+.|+|||. ....+..++
T Consensus 340 T~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~------D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 340 TAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ------DNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred ecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc------CCceEEeecccccccCCcccee
Confidence 987 99999999998632 2556677888999999999888887754 999999998 334444444
Q ss_pred cccc---c--ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCC-ceeee-eeccCC
Q 040533 307 QHQT---S--RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD-GLLSL-KVSPIR 364 (364)
Q Consensus 307 ~~~~---~--~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~v~~~-~~sp~~ 364 (364)
.... . ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ +|+|.|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 3211 1 234678999999999999988999999888876666554333 45544 677764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=175.26 Aligned_cols=281 Identities=17% Similarity=0.280 Sum_probs=214.0
Q ss_pred eecccCCC--c-cEEEEEeCCeEEEEECCCCce-------------eeeeeecCCCCCceEEEEcC-CCCEEEEEecCCc
Q 040533 48 SNMMDWGR--N-NILAIALGLELYLWKQENGEV-------------QKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASK 110 (364)
Q Consensus 48 ~~~~~~~~--~-~~~~~~~~~~i~iw~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 110 (364)
+++++..+ . .++.++.||.|.+||++.... +....-.+|.-.|.++.|-| |.-++.+++-|.+
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDht 125 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHT 125 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccce
Confidence 56666655 2 378899999999999875431 01112237888999999999 5668889999999
Q ss_pred EEEEecCCcceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-E
Q 040533 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-L 187 (364)
Q Consensus 111 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 187 (364)
++|||..+-+....|+ ..+.|.+-+++|-. ..++|+|..+-.|++.|+.++.. ...+.+|.+.|.++.|+|... .
T Consensus 126 lKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~v 203 (397)
T KOG4283|consen 126 LKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWV 203 (397)
T ss_pred EEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeE
Confidence 9999999988887777 56788888888843 34788888999999999998874 788999999999999999665 6
Q ss_pred EEEEeCCCeEEEEeCCCCC------------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 188 LASGGDDNLVHVWDHSKMS------------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
|++|+.||.|++||++... ....++.-..|.+.|..++|..++.+++.++ .|..+++|+..+|+.
T Consensus 204 LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 204 LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNMESGRN 280 (397)
T ss_pred EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeecccCcc
Confidence 8899999999999998641 1122222346888999999999997777765 599999999998764
Q ss_pred EEEEe---cCCCeEEEEE---cCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 256 IHSVD---TKAQICGLEW---NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 256 ~~~~~---~~~~v~~~~~---~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
...-. .+..-..+++ +-+.. ++++. -.++.+.++.+-++..+..+..|...|.+.++-|+=+.+.+|.
T Consensus 281 tl~~~g~~~~n~~~~~~~~~~~~~s~-vfv~~-----p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 281 TLREFGPIIHNQTTSFAVHIQSMDSD-VFVLF-----PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cccccccccccccccceEEEeecccc-eEEEE-----ecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 32210 0111111111 11111 11221 1279999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEe
Q 040533 330 ADETLRFWEA 339 (364)
Q Consensus 330 ~dg~i~vw~~ 339 (364)
.|+.|..|-.
T Consensus 355 ~d~ni~~w~p 364 (397)
T KOG4283|consen 355 MNGNIYMWSP 364 (397)
T ss_pred cCCccccccc
Confidence 9999999987
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=171.73 Aligned_cols=251 Identities=15% Similarity=0.310 Sum_probs=189.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc----ceeeeeecCCCcEEEEEe-ecCCCCEEEEeeCCCcEEEEEc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----KLIRNLEGHDKRVATASW-NHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
+|.+-|.++.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.| +|.-|+.+|+++.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 88999999999999999999999999999996543 445567889999999999 4556899999999999999975
Q ss_pred ccCc--------ceeeeeecccCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCC---CcceEEec-------cccc
Q 040533 160 RVSN--------NVTSRINAHTAEVCGLKWSN--EGNLLASGGDDNLVHVWDHSKMSS---SKCLHRFR-------DHRA 219 (364)
Q Consensus 160 ~~~~--------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~-------~~~~ 219 (364)
.... .....+......|+.+.|.| -|-.||+++.||.++||+...... ......+. .+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 2111 12345566778999999999 567899999999999998765322 11122222 3556
Q ss_pred ceeEEEEccCC--CcEEEeecCCCC-----CeEEEEECCCCe----EEEEE-ecCCCeEEEEEcCCc----cceeeeccC
Q 040533 220 AVKALAWCPYQ--FNVLASGGGTQD-----GCIKIWNVQKGT----CIHSV-DTKAQICGLEWNRHH----KEILSGHGF 283 (364)
Q Consensus 220 ~v~~~~~~~~~--~~~~~~~~g~~d-----~~i~i~d~~~~~----~~~~~-~~~~~v~~~~~~~~~----~~l~~~~~~ 283 (364)
+..|+.|+|.. +.+++.|+ .+ +.+.||....+. .+.++ .+..+|+.++|.|.- ..++++.
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~-- 246 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT-- 246 (361)
T ss_pred cceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--
Confidence 77899998753 35677765 22 478888875532 22233 345889999999963 3455553
Q ss_pred CccCCCCeEEEeeCCCC--------------------ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 284 SSSGDGQKLCLWKYPHM--------------------TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~--------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.|| |+||.+... +.+.++..|.++|..+.|+-.|..|++.|.||.|++|...-..
T Consensus 247 ----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 247 ----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred ----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 488 999998631 2345577899999999999999999999999999999865443
Q ss_pred C
Q 040533 344 G 344 (364)
Q Consensus 344 ~ 344 (364)
.
T Consensus 322 ~ 322 (361)
T KOG2445|consen 322 L 322 (361)
T ss_pred h
Confidence 3
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=192.03 Aligned_cols=262 Identities=16% Similarity=0.255 Sum_probs=213.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc---ceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
.|..-|.++++|...+.+.+|+ .|.|+|||+... ..+..+. .....|+++...| +++.|++|++-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeec
Confidence 6888899999999999999997 578999998643 2222222 2456789999999 9999999999999999999
Q ss_pred ccCcceee-eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 160 RVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 160 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
......+. .+....-...+++.+||.+..+++..||.|.|||+.+. ..++.+++|.+.+.||..+++|. -+-+|+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq---~~VrqfqGhtDGascIdis~dGt-klWTGG 570 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISKDGT-KLWTGG 570 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc---eeeecccCCCCCceeEEecCCCc-eeecCC
Confidence 87653222 22222345677899999999999999999999999875 44899999999999999999994 556665
Q ss_pred CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEee
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
.|++|+.||++.++.+...+..++|.++..+|.+..+++|-. ++.+.+..... .....+.-|++.|.++.|
T Consensus 571 --lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMe------ns~vevlh~sk-p~kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 571 --LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGME------NSNVEVLHTSK-PEKYQLHLHESCVLSLKF 641 (705)
T ss_pred --CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecc------cCcEEEEecCC-ccceeecccccEEEEEEe
Confidence 899999999999999998888899999999999999999864 77777776543 334456678999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.+.|+++++.+.|+.+..|...-+..+...+ ..++|.++.+|-
T Consensus 642 a~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ 684 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF 684 (705)
T ss_pred cccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc
Confidence 9999999999999999999988777655443 356677766653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=190.14 Aligned_cols=314 Identities=19% Similarity=0.306 Sum_probs=242.0
Q ss_pred CCCcceeecccCCCcc--EEEEEeCCeEEEEECCCC--ceeeeee---ecCCCCCceEEEEcCCCCEEEEEecCCcEEEE
Q 040533 42 LRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENG--EVQKLLK---VTGEDDFPTSISWSQDAKTLAVGYMASKLQLW 114 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~--~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 114 (364)
+-.+-.+.++.|+|.. +|+++.|.++.+|...+. -...... ..+.........|+|+++.+++-+..|-.++|
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 3455578999999964 899999999999987654 3333333 33444567899999999999999999999999
Q ss_pred ecCCc---ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEEEEEEcCCCCEE
Q 040533 115 DAETS---KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 115 ~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
..+.. .....+.+|...|..++|+| .|++|++.+.|.+-+++-.-..+ ..+...+-|...++|++|-+....+
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred eccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 84332 23345678999999999999 99999999999999998754222 1233455688889999998866688
Q ss_pred EEEeCCCeEEEEeCCCC-------------------------------------------C-------------------
Q 040533 189 ASGGDDNLVHVWDHSKM-------------------------------------------S------------------- 206 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~-------------------------------------------~------------------- 206 (364)
++|.+...+++|+.... .
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 89999999999985430 0
Q ss_pred -----------CCcceEEecccccceeEEEEccCCCcEEEeecCC---CCCeEEEEECCCCeEEEEEecC-CCeEEEEEc
Q 040533 207 -----------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT---QDGCIKIWNVQKGTCIHSVDTK-AQICGLEWN 271 (364)
Q Consensus 207 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~ 271 (364)
....++++.+|...|.+++.+|++ ++++++..+ ....|++|+..+......+..+ -.|+.++||
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 001123345688899999999998 677776522 2345999999998888777655 569999999
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCce----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC--CCC
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTK----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP--SGS 345 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~--~~~ 345 (364)
|+|++|++.+. |..+.+|....... ....+.|..-|.+..|+|++.+++|+|.|.+|+||..... +.+
T Consensus 582 pdg~~LLsvsR------DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 582 PDGRYLLSVSR------DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred CCCcEEEEeec------CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhh
Confidence 99999999855 99999998754321 2336789999999999999999999999999999999887 333
Q ss_pred cc--eeccCCceeeeeeccC
Q 040533 346 GD--FVSHLDGLLSLKVSPI 363 (364)
Q Consensus 346 ~~--~~~~~~~v~~~~~sp~ 363 (364)
.. ...+..+|+.++|.|.
T Consensus 656 ~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 656 SRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred hhhchhccCCceeeEEeecc
Confidence 33 2357889999999874
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=186.61 Aligned_cols=262 Identities=18% Similarity=0.296 Sum_probs=211.2
Q ss_pred eecccCCCcc-EEEEE--eCCeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 48 SNMMDWGRNN-ILAIA--LGLELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~--~~~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
+..+.|+..+ +++++ .|..+++|.-.. +++..+....+ +.-.|++......++++|+..+.|+|||++...+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 6778998876 44433 466888886432 23333333323 24556666666689999999999999999988888
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEEEEe
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVHVWD 201 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 201 (364)
+.+++|...|+++.++- ++.+||+++..|.|.+..+.++......-.+....|.-+.|+|..+ +|.+++.+|.|.+||
T Consensus 115 r~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 88999999999999998 8999999999999999999887753322223345667899999655 677889999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
+.... ....-...|..+...++|+|..+.++++.| .|..|.+||.+..+....+....+...++|+++|.+|++|.
T Consensus 194 v~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 194 VQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ccCCC--cccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence 87543 223444578999999999999999999988 99999999999988888888899999999999999999996
Q ss_pred cCCccCCCCeEEEeeCCC-CceeeeccccccceeEEeecCCC
Q 040533 282 GFSSSGDGQKLCLWKYPH-MTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
. .|.|..||++. ..++..+..|...|++++|-|..
T Consensus 270 s------~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 S------KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred C------CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 6 99999999985 56778888999999999998764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=179.80 Aligned_cols=269 Identities=25% Similarity=0.405 Sum_probs=199.6
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcC-------CCCEEEEEecCCcEEEEecCCcce-----------------
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-------DAKTLAVGYMASKLQLWDAETSKL----------------- 121 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iw~~~~~~~----------------- 121 (364)
.++||+-....+..-..+ --.....|++|.. .|+++|.|+.|..|.|||+.-...
T Consensus 153 EvYVyn~~e~nlYvHHD~-ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k 231 (463)
T KOG0270|consen 153 EVYVYNEEEENLYVHHDF-ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK 231 (463)
T ss_pred EEEEEcCCCcceeEecce-eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh
Confidence 567776554332111000 1134456777753 367999999999999999852110
Q ss_pred ----eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCe
Q 040533 122 ----IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNL 196 (364)
Q Consensus 122 ----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 196 (364)
-....+|+..|..++|+....+.||+|+.|.+|++||+.++++ ...+..|...|.++.|+| ....|++|+.|++
T Consensus 232 ~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 232 KGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred hcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccce
Confidence 0112358888999999887788999999999999999998886 677778999999999999 5679999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEec-CCCeEEEEEcCCc
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDT-KAQICGLEWNRHH 274 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~ 274 (364)
|.+.|.|.......... ..+.|-.++|.|.....+.++. .||+|+-+|+|+. +++.++.. ..+|.++++++..
T Consensus 311 V~l~D~R~~~~s~~~wk---~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWK---FDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred EEeeeccCccccCceEE---eccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEeccCCcceEEecCCC
Confidence 99999996433222222 3577999999999988888876 9999999999985 88888764 5789999999988
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCceeee--ccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCCCCc
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGE--LQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
+.+++. ++.++.|++|++..-.+... -.-.-+...|.++.|+-. +++.|+..+.++|||+.+...+.
T Consensus 386 p~~l~t-----~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 386 PGLLST-----ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred Ccceee-----ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 776654 25699999999865443221 111123466778888665 56778888889999998876543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=188.67 Aligned_cols=298 Identities=18% Similarity=0.265 Sum_probs=227.7
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC---EEEEEecCCcEEEEecCCcc-----------------
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK---TLAVGYMASKLQLWDAETSK----------------- 120 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~~----------------- 120 (364)
++.+..|.++.-...+......+.||.+.|.+++|...+. +||+++.|..|+||.+.-+.
T Consensus 165 Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 165 GGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred cCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 3455678888877778888899999999999999987544 88999999999999874221
Q ss_pred ----ee----------eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee------eeeecccCcEEEEE
Q 040533 121 ----LI----------RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT------SRINAHTAEVCGLK 180 (364)
Q Consensus 121 ----~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------~~~~~~~~~v~~~~ 180 (364)
.. ..+.+|..-|+++.|+| .+..|++++.|.++.+|.......+. -...+.........
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l 323 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL 323 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEE
Confidence 01 11247999999999999 88899999999999999877553211 11223344578889
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--------
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-------- 252 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------- 252 (364)
|+|+++.+++-+..|-.++|.............+.+|.+.|..++|+|.|.+++.++ .|.+-|+|-.-.
T Consensus 324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs---~DQTTRlFa~wg~q~~wHEi 400 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS---LDQTTRLFARWGRQQEWHEI 400 (764)
T ss_pred EcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec---cccceeeecccccccceeee
Confidence 999999999999999999998444333344555678999999999999998776655 576666653210
Q ss_pred ---------------------------CeEEEEE----------------------------------------------
Q 040533 253 ---------------------------GTCIHSV---------------------------------------------- 259 (364)
Q Consensus 253 ---------------------------~~~~~~~---------------------------------------------- 259 (364)
.+.++.+
T Consensus 401 aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~ 480 (764)
T KOG1063|consen 401 ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN 480 (764)
T ss_pred cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence 0000000
Q ss_pred ------------------------------------------ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 260 ------------------------------------------DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 260 ------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.+...|.+++.+|++++++++.. +..-+...|++|+.
T Consensus 481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCK-S~~~ehAvI~lw~t 559 (764)
T KOG1063|consen 481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACK-SSLKEHAVIRLWNT 559 (764)
T ss_pred cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhh-hCCccceEEEEEec
Confidence 01125889999999999998753 22233567999999
Q ss_pred CCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC----CcceeccCCceeeeeeccC
Q 040533 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG----SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~v~~~~~sp~ 363 (364)
.+......+.+|.-.|+.++|||||++|++.|.|.++.+|....... ....+.|..-|++..|+|.
T Consensus 560 ~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 560 ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred cchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 99999999999999999999999999999999999999999865433 2335689999999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-25 Score=179.45 Aligned_cols=294 Identities=16% Similarity=0.234 Sum_probs=223.6
Q ss_pred ceeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce---
Q 040533 46 YYSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--- 121 (364)
Q Consensus 46 ~~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--- 121 (364)
-++.++.|.++ .++++.++|.|.||+..+.+..+... .|.+.|.+++.-.+|.+|- |+.|..|..||-. -+.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~ 322 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRE 322 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEecCccEee-cCccceEEecccc-cccccc
Confidence 47889999986 58899999999999997776654443 8999999999999997555 9999999999832 110
Q ss_pred --------------------------------------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 122 --------------------------------------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 122 --------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.....+|......++.+| +.+.+++++.|+.+++|+ ..+
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k 399 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHK 399 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCc
Confidence 011245777888899999 999999999999999999 222
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
..--.....++.|+.|+|.| .+|.|...|...+.|.++.. +.++...+.++.+++|+|+| .+++.|+ .|+
T Consensus 400 --~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~----lv~~~~d~~~ls~v~ysp~G-~~lAvgs--~d~ 469 (626)
T KOG2106|consen 400 --LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD----LVTIHTDNEQLSVVRYSPDG-AFLAVGS--HDN 469 (626)
T ss_pred --eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce----eEEEEecCCceEEEEEcCCC-CEEEEec--CCC
Confidence 22223456788999999999 99999999999999987632 33333348899999999999 5666655 999
Q ss_pred eEEEEECCCCeEE-EEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-------------
Q 040533 244 CIKIWNVQKGTCI-HSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ------------- 307 (364)
Q Consensus 244 ~i~i~d~~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~------------- 307 (364)
.|++|.+...... .... ..++|+.+.|++|++++.+.+. |-.|..|....-+.+...+
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~------d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF 543 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG------DYEILYWKPSECKQITSVKDVKWATYTCTLGF 543 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC------ceEEEEEccccCcccceecceeeeeeEEEEEE
Confidence 9999998754332 2221 2388999999999999998755 8899999543322222111
Q ss_pred -----ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC---CCcceeccCCceeeeeecc
Q 040533 308 -----HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS---GSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 308 -----~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~v~~~~~sp 362 (364)
.+...|..++-+.+.+++|+|...|.|++|...-.+ ....+.+|.+-|++++|.-
T Consensus 544 ~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~ 606 (626)
T KOG2106|consen 544 EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC 606 (626)
T ss_pred EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEee
Confidence 233456666677788899999999999999875433 3456678999999999973
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=181.94 Aligned_cols=238 Identities=21% Similarity=0.354 Sum_probs=188.2
Q ss_pred cEEEEE-eCCeEEEEECCCCc-eeeeee------------------ecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEe
Q 040533 57 NILAIA-LGLELYLWKQENGE-VQKLLK------------------VTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWD 115 (364)
Q Consensus 57 ~~~~~~-~~~~i~iw~~~~~~-~~~~~~------------------~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~ 115 (364)
+++|++ .+..|.|||+.-.. ..+.+. ..+|++.|.+++|+.. .+.||+|+.|.+|.+||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 466654 68899999975221 111111 2379999999999875 46899999999999999
Q ss_pred cCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC-CCEEEEEeCC
Q 040533 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE-GNLLASGGDD 194 (364)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 194 (364)
+.++++..++..|.+.|.++.|+|....+|++|+.|++|.+.|.+.....-..+ ...+.|-.++|.|. ...++++..|
T Consensus 273 ~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 273 VDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred cCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecCC
Confidence 999999999999999999999999899999999999999999998544322223 34578999999994 4578888899
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEc
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWN 271 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~ 271 (364)
|+|+-+|+|+.. +++.+++.|.++|.++++++.-+.++++++ .|+.|++|++..........+. +...++++.
T Consensus 352 G~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 352 GTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999864 789999999999999999999999999987 8999999999765443222221 346778888
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCceee
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~ 304 (364)
|+-.++++.+ +..+.+++||+.+...+.
T Consensus 428 ~~~a~~la~G-----G~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 428 PDVAFTLAFG-----GEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CCcceEEEec-----CccceEEEeecccChhHH
Confidence 8876665543 446789999998765543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-27 Score=203.26 Aligned_cols=244 Identities=21% Similarity=0.396 Sum_probs=208.8
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~ 179 (364)
.+++.+..+-.+++|+.+. +..|...|.++..-. ..+.+++|+.|..+-+|.+..... ...+.+|..+|.++
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeec-cceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 3444555556677887542 345777788887755 889999999999999999876654 44588999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 180 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
.|+++..+|++|+.+|+|++||+... +.++++.+|...+.++.|+|.+. +.+.+ +.|..+.+||.+...+...+
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeA---k~vrtLtgh~~~~~sv~f~P~~~-~~a~g--Stdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEA---KIVRTLTGHLLNITSVDFHPYGE-FFASG--STDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhh---hhhhhhhccccCcceeeeccceE-Eeccc--cccccceehhhhccCceeee
Confidence 99999999999999999999998764 45889999999999999999984 44554 49999999999988888888
Q ss_pred ecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 260 DTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 260 ~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
..+ ..+..+.|+|+|++++.+. +|..++|||...|+.+.+|..|.+.+..+.|+|..-++++|+.|++|++||
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~------ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGG------EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD 224 (825)
T ss_pred cCCcceeEEEeecCCCceeeccC------CcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeec
Confidence 765 4478889999999999884 489999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCcceeccCCceeeeeeccC
Q 040533 339 AFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++.+.+........+|.+++|+|.
T Consensus 225 letfe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 225 LETFEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred cceeEEeeccCCccCCceeeeecCC
Confidence 9988887777777889999999985
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=181.70 Aligned_cols=251 Identities=20% Similarity=0.249 Sum_probs=201.4
Q ss_pred cEEEEEe-CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEE
Q 040533 57 NILAIAL-GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATA 135 (364)
Q Consensus 57 ~~~~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 135 (364)
.++++.. ...|.+|.+....... ...--.+.|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+++
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred heeeecccCccccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 3444443 4588999987654333 112336789999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEccc--------CcceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRV--------SNNVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.|+- |+.+|++|+.||.|.+|.+.. ...+...+..|.-+|+++...+. ..++++++.|.++++||+..+
T Consensus 130 ~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 130 KFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred EEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 9999 999999999999999998742 12346678899999999988764 358999999999999998875
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe----------------EEEEEecC---CCeE
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT----------------CIHSVDTK---AQIC 266 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----------------~~~~~~~~---~~v~ 266 (364)
. .+.++. .+..+.+++.+|.+.. +.+| +.+|.|.+.++.+.. .+..+.++ .+|+
T Consensus 209 ~---LLlti~-fp~si~av~lDpae~~-~yiG--t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 209 V---LLLTIT-FPSSIKAVALDPAERV-VYIG--TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred e---eeEEEe-cCCcceeEEEcccccE-EEec--CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 3 344443 4678999999998854 4454 489999998875422 22223222 4799
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL 323 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 323 (364)
+++++-||..|++|.. ||.++|||+.+.++++++....++|+.+.+.|-.+
T Consensus 282 cLais~DgtlLlSGd~------dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDE------DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred EEEEecCccEEEeeCC------CCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 9999999999999955 99999999999999999987788999999976543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=169.26 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=196.3
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee--eeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEE
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI--RNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINH 157 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 157 (364)
.+++|.+.|++++|+.||++||+++.|+.|+||+++.-... +.++ -.-+..+.+.|.|+-..+++++-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 46699999999999999999999999999999999764221 1111 0112457889999555666666677789999
Q ss_pred EcccCcc-----------eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEE
Q 040533 158 DVRVSNN-----------VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226 (364)
Q Consensus 158 d~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 226 (364)
.+..... -...-..|.-.+..+-...++.+|++++.|..|.+|+++ + +.+..+......-+..+.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G---q~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G---QLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C---ceeeeeccccccccceee
Confidence 8753321 011223456677777777788999999999999999987 3 447777666677788899
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECC---CCe-----EEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQ---KGT-----CIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~---~~~-----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
+|+|++++++| ..--|++|..- .|. .+..+.+ .+.|..++|+++...+++.+ .||.+++||.
T Consensus 237 SP~GRFia~~g---FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS------kDG~wriwdt 307 (420)
T KOG2096|consen 237 SPDGRFIAVSG---FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS------KDGKWRIWDT 307 (420)
T ss_pred CCCCcEEEEec---CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe------cCCcEEEeec
Confidence 99997666665 46779999863 222 2233443 46799999999999999874 4999999997
Q ss_pred CC-------Cceeeec----cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-ccCCceeeeeeccC
Q 040533 298 PH-------MTKWGEL----QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 298 ~~-------~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
+- .+.+++. ....+....+..+|.|+.||.+. ...++++..+.++....+. .|...|.+++|+|.
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 42 2222222 11223345899999999888764 4579999999988887776 68999999999984
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=183.08 Aligned_cols=279 Identities=17% Similarity=0.285 Sum_probs=216.4
Q ss_pred eecccCCCc-cEEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN-NILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++++.+ +.+|++ .+|.|-+|++..+-.....-..+....|.+++|++ +..|.+.+.+|.|.-||+.+++....+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEe
Confidence 677777763 445554 78999999998865443332224567899999995 556777778999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
....+.|++++.+| .+..++.|+.||.+..++...+.-. ...+...+++|.+++|+|++..++.|+.||.|++||...
T Consensus 107 d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 107 DSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred cCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 99999999999999 8999999999997777776655422 223334568999999999999999999999999999887
Q ss_pred CCCCcceEE-----ecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccce
Q 040533 205 MSSSKCLHR-----FRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEI 277 (364)
Q Consensus 205 ~~~~~~~~~-----~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 277 (364)
+.... +.+ +.. ...-|+++.|-.++ .+++|. ..|+|.+||...+..++.+.. ...|.+++..+++..+
T Consensus 186 ~~t~~-~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 186 GQTLH-IITMQLDRLSKREPTIVWSVLFLRDS--TIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred CceEE-EeeecccccccCCceEEEEEEEeecC--cEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 65422 111 111 33457888887654 667754 899999999999999988865 4789999999999998
Q ss_pred eeeccCCccCCCCeEEEeeCCCCce----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTK----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
++++. |+.|..|...+.+. ......|...|.+++..++ .|++|+.|..+.+-....
T Consensus 261 fsaGv------d~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGV------DPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEccC------CCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 88754 88888888766543 2234568888999999877 899999999888766554
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=185.85 Aligned_cols=269 Identities=16% Similarity=0.263 Sum_probs=208.8
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
+.+.+|.+.|.++...|.|.+||+|+.||+|+||.+.+|.+++++. ..+.|.|++|+|....-++++..+..+.+.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3456999999999999999999999999999999999999999988 567899999999433333333333334444322
Q ss_pred cC------------------------------------cceeeeeecccCcEEEEEEcCCCCEEEEEeCC---CeEEEEe
Q 040533 161 VS------------------------------------NNVTSRINAHTAEVCGLKWSNEGNLLASGGDD---NLVHVWD 201 (364)
Q Consensus 161 ~~------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd 201 (364)
-+ +.-+...-.|...|..+.|+..|.+|++...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 11 00012233577889999999999999998754 4688999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 280 (364)
+..... ...|....+.|.++.|+|...+++++ ....|++||+..+..+..+... ..+..++.+|.|..|+++
T Consensus 553 LSK~~s---Q~PF~kskG~vq~v~FHPs~p~lfVa----Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 553 LSKRKS---QSPFRKSKGLVQRVKFHPSKPYLFVA----TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred cccccc---cCchhhcCCceeEEEecCCCceEEEE----eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 876544 34444456789999999999888876 3688999999987777665444 568999999999999988
Q ss_pred ccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC------C---CCcceec
Q 040533 281 HGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP------S---GSGDFVS 350 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~------~---~~~~~~~ 350 (364)
+. |+.+..||+.-. ++.+++..|...+++++|++.-.++++|+.||++.|+.-.-- . .++.+.+
T Consensus 626 s~------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 626 SY------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred cC------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 54 999999999754 677888999999999999999999999999999999853211 1 2456667
Q ss_pred cCCc----eeeeeeccC
Q 040533 351 HLDG----LLSLKVSPI 363 (364)
Q Consensus 351 ~~~~----v~~~~~sp~ 363 (364)
|... |.++.|+|.
T Consensus 700 H~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPR 716 (733)
T ss_pred ceeecccceEeecccCC
Confidence 7544 999999996
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=176.86 Aligned_cols=255 Identities=11% Similarity=0.098 Sum_probs=186.9
Q ss_pred eecccCCCcc--EEE-EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCCcceee
Q 040533 48 SNMMDWGRNN--ILA-IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~~--~~~-~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 123 (364)
...++|++++ +++ ++.++.|++||..+++...... .+. .+..++|+|+++.++++ ..++.|++||+.+++.+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 3457788764 333 4467899999999887644332 333 35788999999977655 468999999999888777
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCC-cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE-eCCCeEEEEe
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDK-SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG-GDDNLVHVWD 201 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd 201 (364)
.+.. ...+.+++|+| ++.++++++.++ .+.+||..+.... ... .....+..++|+|++++++++ ..++.|++||
T Consensus 110 ~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~-~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 110 EIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIV-DNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred EeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEE-EEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 7653 34568899999 999999888775 4667898765532 222 223345789999999988654 4689999999
Q ss_pred CCCCCCCcceEEeccc-------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCc
Q 040533 202 HSKMSSSKCLHRFRDH-------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH 274 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 274 (364)
+++.+. +..+..+ ......++|+|+++.++++.+ .++.+.+||+++++.+..+.....+.+++|+|+|
T Consensus 186 ~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g 260 (300)
T TIGR03866 186 VATRKV---IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDE 260 (300)
T ss_pred cCccee---eeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCC
Confidence 886533 3332211 112346889999987666544 4678999999998888776666789999999999
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
++|+++. +.++.|.+||+.+++.+..++.. ...+.++++|
T Consensus 261 ~~l~~~~-----~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 261 KYLLTTN-----GVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CEEEEEc-----CCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9998763 23899999999999999988755 4558888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=181.53 Aligned_cols=295 Identities=20% Similarity=0.330 Sum_probs=220.8
Q ss_pred CccEEEEEeCCeEEEEECCCCcee---eeeeecCCCCCceEEEEcCCC--CEEEEEecCCcEEEEecCCcceeeeeecCC
Q 040533 55 RNNILAIALGLELYLWKQENGEVQ---KLLKVTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
++.++++..++.+.+|+..+.+.. +..-.+...+.|+++. +|.. +.++.|+..|.+.||++++++.+.+++++.
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~ 202 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF 202 (910)
T ss_pred cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccc
Confidence 356788888999999998874211 1111222233377774 6643 678999999999999999999999999999
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~ 208 (364)
..|+++.-+| --+.++.|..+|+|.+++++.++. +..++...++|+.++|..||+ .+++|+..|.+.+||++.....
T Consensus 203 s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 203 SRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI 280 (910)
T ss_pred cceeEeccCC-cceEEEEeccCceEEEEEcccCcE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence 9999999999 899999999999999999998775 555654469999999999987 5666667799999999864321
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--C---------------------------------
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--G--------------------------------- 253 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~--------------------------------- 253 (364)
......|.+.|....|.|.. -++++++ .|+.+++|=..+ |
T Consensus 281 --~v~~nah~~sv~~~~fl~~e-pVl~ta~--~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 --NVTRNAHYGSVTGATFLPGE-PVLVTAG--ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred --eeeeccccCCcccceecCCC-ceEeecc--CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEeccc
Confidence 11222466666666666654 3444443 355544442210 0
Q ss_pred -----------------------------------------------------------------------------eE-
Q 040533 254 -----------------------------------------------------------------------------TC- 255 (364)
Q Consensus 254 -----------------------------------------------------------------------------~~- 255 (364)
..
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G 435 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG 435 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc
Confidence 00
Q ss_pred EEEEecC------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec---cccccceeEEeecCCCCEEE
Q 040533 256 IHSVDTK------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL---QHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 256 ~~~~~~~------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~ 326 (364)
...+++. ..+++++.++.|++.+.|.. .|.|-+|++++|-....+ ..|.++|++++...-++.++
T Consensus 436 ~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S------~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v 509 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS------KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV 509 (910)
T ss_pred cEEecCccccccCcceEEEEEeccCceEEEecc------CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE
Confidence 0011111 24678888888998888865 999999999999998888 58999999999999899999
Q ss_pred EEeCCCcEEEEEeeCCCC-----------------------------------------CcceeccCCceeeeeeccC
Q 040533 327 SAAADETLRFWEAFGPSG-----------------------------------------SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~-----------------------------------------~~~~~~~~~~v~~~~~sp~ 363 (364)
+++.+|.+++||+.+... ++.|.+|.+.|++++|||.
T Consensus 510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence 999999999999887652 1256689999999999995
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=167.03 Aligned_cols=265 Identities=17% Similarity=0.272 Sum_probs=202.5
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcc------------eeeeee-cCCCcEEEEEee-------cCCCCEEEEe
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSK------------LIRNLE-GHDKRVATASWN-------HWNGHILTSG 148 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~-~~~~~v~~~~~~-------~~~~~~l~~~ 148 (364)
....+.|+|||..|++-+.|..+++|++...- ....++ .....|...+|- | +..++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeec
Confidence 34578999999999999999999999985211 011111 134567777774 5 77899999
Q ss_pred eCCCcEEEEEcccCcceeeeeec--ccC---cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-----ccc
Q 040533 149 SQDKSIINHDVRVSNNVTSRINA--HTA---EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-----DHR 218 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~ 218 (364)
+.+.-|.+||.-+++. ...+.+ |.. ...+++|+|||.+|++|. ...|+++|+......-.+.... +..
T Consensus 130 sr~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999988763 333322 332 356899999999998775 6789999994332222222222 236
Q ss_pred cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 219 AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 219 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
+.+.+++|+|....+++.++ ...++-||.-..+.++..+-. .+.|+.+.|.++|+.+++|. -.+..|..||+
T Consensus 208 giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa-----Rk~dkIl~WDi 280 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-----RKDDKILCWDI 280 (406)
T ss_pred ceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc-----cCCCeEEEEee
Confidence 77899999999988999976 889999999888888887754 47899999999999999886 34888999999
Q ss_pred CC-Cceeeecccccc-ceeE--EeecCCCCEEEEEeCCCcEEEEEeeC-CCCCcceeccCCceeeeeeccC
Q 040533 298 PH-MTKWGELQHQTS-RILE--LSQSPDGLTVVSAAADETLRFWEAFG-PSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 298 ~~-~~~~~~~~~~~~-~i~~--i~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+. ..++..+..|.. .-.. ....|++++|++|+.||.|++||++. +..+..+..+.+.++.++++|+
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 75 566677777654 2233 44568999999999999999999998 6667788889999999999996
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=171.70 Aligned_cols=244 Identities=21% Similarity=0.370 Sum_probs=186.6
Q ss_pred CCCCCceEEEEcCCCC--EEEEEecCCcEEEEecCC----------------cceeeeeecCCCcEEEEEeecCCCCEEE
Q 040533 85 GEDDFPTSISWSQDAK--TLAVGYMASKLQLWDAET----------------SKLIRNLEGHDKRVATASWNHWNGHILT 146 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 146 (364)
.|.+.+..+.-++-++ +.|+=+..|.|+||++.. .+.+.++.+|...=+.++|+|.....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 6777777777777554 555556889999999842 2456778889999999999996667799
Q ss_pred EeeCCCcEEEEEcccCcce--eeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 147 SGSQDKSIINHDVRVSNNV--TSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
+|..-+.|++|...++.-. ...+.+|+..|..++||| ....|++|+-||+|+|||+|......++.. +.|.+.|+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNV 307 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNV 307 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceee
Confidence 9999999999998876522 234567999999999999 456999999999999999998765444544 889999999
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCC---CeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQK---GTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
|.|+.... +|++|+ .||+++|||++. ++++..++. ..+|+++.|+|...-+++.. +.|..|.+||+..
T Consensus 308 ISWnr~~~-lLasG~--DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas-----g~D~QitiWDlsv 379 (440)
T KOG0302|consen 308 ISWNRREP-LLASGG--DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS-----GEDNQITIWDLSV 379 (440)
T ss_pred EEccCCcc-eeeecC--CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec-----cCCCcEEEEEeec
Confidence 99999886 889987 999999999986 567777764 58899999999766554432 5599999999853
Q ss_pred Cce-----------eeec-----ccc--ccceeEEeecCCC-CEEEEEeCCCcEEEEE
Q 040533 300 MTK-----------WGEL-----QHQ--TSRILELSQSPDG-LTVVSAAADETLRFWE 338 (364)
Q Consensus 300 ~~~-----------~~~~-----~~~--~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~ 338 (364)
..- +..+ --| ...+..+.|+++- .+|++.+.||. .||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEEE
Confidence 211 1111 113 3457788999864 37888888874 4443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=168.88 Aligned_cols=273 Identities=19% Similarity=0.299 Sum_probs=204.6
Q ss_pred cEEEEEeCCeEEEEECCCCceeee---eeecCCCCCceEEEEcCC----CCEEEEEecCCcEEEEecCCcceeeeeecCC
Q 040533 57 NILAIALGLELYLWKQENGEVQKL---LKVTGEDDFPTSISWSQD----AKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~---~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
.++|....+.+.+|+....-...+ ..-..|......++|+-+ ..++|+|+.-|.|+|.|+.+++....+.+|.
T Consensus 56 ~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG 135 (385)
T KOG1034|consen 56 QVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG 135 (385)
T ss_pred ceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC
Confidence 577777778999998765432222 222357788889999864 3489999999999999999999999999999
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee--eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS--RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
..|+.+.+.|...+++++++.|..|++|++++...+.. -..+|.+.|.++.|+++|.++++++.|..+++|++...+.
T Consensus 136 ~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 136 GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHH
Confidence 99999999998889999999999999999998775322 3457999999999999999999999999999999884211
Q ss_pred Ccc----------------------eE---EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-CCeE------
Q 040533 208 SKC----------------------LH---RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTC------ 255 (364)
Q Consensus 208 ~~~----------------------~~---~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~------ 255 (364)
... .. +-.-|...|.|+.|-- .++++-+ -++.|..|... -++.
T Consensus 216 ~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSks--cenaI~~w~pgkl~e~~~~vkp 290 (385)
T KOG1034|consen 216 KNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKS--CENAIVCWKPGKLEESIHNVKP 290 (385)
T ss_pred hhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecc--cCceEEEEecchhhhhhhccCC
Confidence 100 00 1123667777777764 3444443 58899999872 1221
Q ss_pred -------EEEEecC-CCe--EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee--ecc--ccccceeEEeecCC
Q 040533 256 -------IHSVDTK-AQI--CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG--ELQ--HQTSRILELSQSPD 321 (364)
Q Consensus 256 -------~~~~~~~-~~v--~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~--~~~~~i~~i~~~~~ 321 (364)
+..++.+ ..+ ...+|+|-++.|+.|.. .|.|++||++..++.. ++. .....|...+|+.|
T Consensus 291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq------~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d 364 (385)
T KOG1034|consen 291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ------SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD 364 (385)
T ss_pred CccceeeeeEeccCccceEEEEEeecHHHHHHhhccC------CCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence 1222222 223 34567788999998865 9999999998776632 121 12357899999999
Q ss_pred CCEEEEEeCCCcEEEEEee
Q 040533 322 GLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~ 340 (364)
|.+|+...+|++|.-||.-
T Consensus 365 gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 365 GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEEeCCCcEEEEEee
Confidence 9999999999999999864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=176.59 Aligned_cols=262 Identities=19% Similarity=0.340 Sum_probs=206.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee-eeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI-RNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
...|.+++++.+.+.||.+-.+|.|.||++..+-.. ..+.++ +..|.+++|. ++..|++.+.+|.|.-||+.+.++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEEEecccCce
Confidence 567999999999999999999999999999876433 334443 5679999998 466788889999999999998875
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
...+....+.|++++.+|.+..++.|++||.+..++..... ...-..+....+.|.+++|+|++.. ++.| +.||.
T Consensus 103 -~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLslsw~~~~~~-i~~G--s~Dg~ 177 (691)
T KOG2048|consen 103 -KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSLSWNPTGTK-IAGG--SIDGV 177 (691)
T ss_pred -eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-EEEEeecccccceEEEEEecCCccE-EEec--ccCce
Confidence 56677788999999999999999999999977777765432 1222334445689999999999844 4554 49999
Q ss_pred EEEEECCCCeEEEEEec-----C----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeE
Q 040533 245 IKIWNVQKGTCIHSVDT-----K----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILE 315 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~-----~----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 315 (364)
|++||..++..+..... . .-|.++.+-.++ .+++|.. .|.|.+||...+..+..+..|.+.|.+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS------~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS------AGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC------CceEEEEcccCcchhhhhhhhhcceeE
Confidence 99999999887763321 1 126777777555 4556643 899999999999999999999999999
Q ss_pred EeecCCCCEEEEEeCCCcEEEEEeeCCCCC----cceeccCCceeeeeecc
Q 040533 316 LSQSPDGLTVVSAAADETLRFWEAFGPSGS----GDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 316 i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~v~~~~~sp 362 (364)
++..+++.++++++.|+.|.-+...+.... .....|...|.+++..+
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999999999999999999999888776441 12235666677766543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=181.71 Aligned_cols=262 Identities=18% Similarity=0.315 Sum_probs=193.4
Q ss_pred EEEEcC---CCCEEEEEecCCcEEEEecCCcce------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 92 SISWSQ---DAKTLAVGYMASKLQLWDAETSKL------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 92 ~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
+..|++ ....|+.+.++|.|.++|...... +.....|.+.|..+.|.| ....|++++.|.++++||+++.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccc
Confidence 456665 346899999999999999865432 345567999999999999 8999999999999999999977
Q ss_pred cceee--eeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCC------------------------CcceEEec
Q 040533 163 NNVTS--RINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSS------------------------SKCLHRFR 215 (364)
Q Consensus 163 ~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~------------------------~~~~~~~~ 215 (364)
+. .. .+.+|...|.+++|.| +...|++|+.||.|.|||++.... .+.+....
T Consensus 133 ~l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 RL-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ee-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 64 33 3779999999999999 556899999999999999875320 01112222
Q ss_pred ccccceeE---EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------cC----CCeEEEEEcCCccceeee
Q 040533 216 DHRAAVKA---LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------TK----AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 216 ~~~~~v~~---~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~----~~v~~~~~~~~~~~l~~~ 280 (364)
.+...|.+ +.+..|. ..|+++++ .|+.|++||+++........ .+ -.+.++.....|.+|++.
T Consensus 212 A~s~ti~ssvTvv~fkDe-~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDE-STLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccCceeeeeEEEEEecc-ceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 34444444 4444555 45555542 69999999999765433221 11 237788888889999887
Q ss_pred ccCCccCCCCeEEEeeCCCCc--eeeeccccccc--eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC-CcceeccCCce
Q 040533 281 HGFSSSGDGQKLCLWKYPHMT--KWGELQHQTSR--ILELSQSPDGLTVVSAAADETLRFWEAFGPSG-SGDFVSHLDGL 355 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~v 355 (364)
.. |+.|++|++.+.. ++..+.++... -..-..+||+.+|++|+.|...++|.+.+.+. ...+.+|.-.|
T Consensus 290 Ct------D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 290 CT------DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred ec------CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence 54 9999999997643 34444443321 12235689999999999999999999998876 44566999999
Q ss_pred eeeeeccC
Q 040533 356 LSLKVSPI 363 (364)
Q Consensus 356 ~~~~~sp~ 363 (364)
++++|.|.
T Consensus 364 t~V~w~pS 371 (720)
T KOG0321|consen 364 TTVRWLPS 371 (720)
T ss_pred EEEeeccc
Confidence 99999884
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=200.19 Aligned_cols=265 Identities=23% Similarity=0.426 Sum_probs=204.0
Q ss_pred eEEEEcCCCC-EEEEEec----------CCcEEEEecC--Ccc----eeeeeecCCCcEEEEEeecCCCC----EEEEee
Q 040533 91 TSISWSQDAK-TLAVGYM----------ASKLQLWDAE--TSK----LIRNLEGHDKRVATASWNHWNGH----ILTSGS 149 (364)
Q Consensus 91 ~~~~~s~~~~-~l~~~~~----------dg~i~iw~~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~ 149 (364)
-.++|+|++. ++|+|.. +.++-||.+. +.+ ....+. -..+.+.++|.+ .+. +|+.|.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~-~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGS-YGSHSHGLIAGGL 87 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecc-cCCCccceeeccc
Confidence 3578999886 5665532 4456666553 222 233333 356788999988 554 499999
Q ss_pred CCCcEEEEEcccC-----cceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 150 QDKSIINHDVRVS-----NNVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 150 ~dg~i~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
+||.|.+||...- ...+.....|.+.|..+.|++. +++||+|+.||.|.|||+.+.+..-..- -....+.|.+
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~ 166 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKC 166 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceE
Confidence 9999999998652 2345667789999999999994 5599999999999999998854422111 1224678999
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCC
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
++|+..-.++|++++ .+|++.|||++..+++-.+... ..+..++|+|++.. ++++.. ....-.|.+||++.
T Consensus 167 lsWNrkvqhILAS~s--~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~---dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGS--PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG---DDSAPVIQLWDLRF 241 (1049)
T ss_pred eccchhhhHHhhccC--CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecC---CCCCceeEeecccc
Confidence 999999889999987 8999999999998887766544 34889999998743 222221 02245799999875
Q ss_pred -CceeeeccccccceeEEeecCCC-CEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 300 -MTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 300 -~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..+++.+++|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+....+.+..+.|+|.
T Consensus 242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence 45677888999999999999966 89999999999999999999999999888899999999985
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=179.29 Aligned_cols=179 Identities=19% Similarity=0.258 Sum_probs=127.5
Q ss_pred CCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeC---CeEEEEECCC--CceeeeeeecCCCCCceEEEEcC
Q 040533 23 GSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALG---LELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQ 97 (364)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~ 97 (364)
+......|+..+.+++.+...-..+-+.+.-| ..++|...+ +.+-|.-+.. .+...+-.+.+|.+.|+.+.|+|
T Consensus 11 knt~p~vPk~E~~i~di~vG~~~~~~n~I~aS-~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~Fsp 89 (1012)
T KOG1445|consen 11 KNTTPKVPKKEETIFDIPVGNLSCTNNGIHAS-ADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSP 89 (1012)
T ss_pred ccCCCCCCchhhheeecccccccccCCCcccc-cceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccc
Confidence 34455667777777777654433333333322 234554433 3566655432 22333445569999999999999
Q ss_pred -CCCEEEEEecCCcEEEEecCCccee------eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee
Q 040533 98 -DAKTLAVGYMASKLQLWDAETSKLI------RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN 170 (364)
Q Consensus 98 -~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 170 (364)
+..+||+|+.|..|+||.+..+... ..+.+.+-.|.++.|+|+.+.++++ +..|.+++||+.+.+. ...+.
T Consensus 90 F~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v~i~D~stqk~-~~el~ 167 (1012)
T KOG1445|consen 90 FADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSVYITDISTQKT-AVELS 167 (1012)
T ss_pred cchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCceEEEEEcccCce-eeccc
Confidence 4568999999999999999854221 1233345578899999955555555 5678999999998775 66788
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 171 AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+|...|.++.|+.||.+|++++.|..|+|||-+.
T Consensus 168 ~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 168 GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred CCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 9999999999999999999999999999999775
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-25 Score=195.86 Aligned_cols=249 Identities=20% Similarity=0.403 Sum_probs=198.8
Q ss_pred CCCCceEEEEcCCCCE----EEEEecCCcEEEEecCC---c---ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 86 EDDFPTSISWSQDAKT----LAVGYMASKLQLWDAET---S---KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~----l~~~~~dg~i~iw~~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
-....+.++|.+.|.. ||.|.+||.|.+||... + ..+.+...|.+.|..+.|++..+++||+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3567889999997765 88889999999999765 2 345667789999999999997778999999999999
Q ss_pred EEEcccCcceeee-eecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc--ceeEEEEccCCC
Q 040533 156 NHDVRVSNNVTSR-INAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA--AVKALAWCPYQF 231 (364)
Q Consensus 156 ~~d~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~ 231 (364)
|||+...+..... -....+.|.+++|+. ....|++++.+|.+.|||++..+ ++..+..+.. .+..++|+|+..
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~---pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK---PIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC---cccccccCCCccceeeeeeCCCCc
Confidence 9999876543322 223557899999988 45688999999999999998753 3555554433 477899999987
Q ss_pred cEEEeecC-CCCCeEEEEECCCC-eEEEEEec-CCCeEEEEEcCCc-cceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 232 NVLASGGG-TQDGCIKIWNVQKG-TCIHSVDT-KAQICGLEWNRHH-KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 232 ~~~~~~~g-~~d~~i~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
.-++++++ ...-.|.+||+|.. .+++.+++ ...|.++.|++.+ .+++++ +.|+.|.+|+.++++.+.++.
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs------gkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS------GKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc------cCCCCeeEecCCCceEeeecC
Confidence 66666542 12346999999864 45666654 4679999999988 455544 569999999999999999999
Q ss_pred ccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCC
Q 040533 308 HQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~ 343 (364)
...+.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8889999999999776 78888999999999998765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=178.71 Aligned_cols=277 Identities=18% Similarity=0.314 Sum_probs=210.5
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
++..++|.|++ -+..+.+..+.+||.+.|... .++++|.+.|+|++|+.||+.+|+|+.|..|.+|+.+-.. +-.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee
Confidence 56778888865 555666789999999999864 4566999999999999999999999999999999854322 2233
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.|...|.|+.|+| -...|++++-. ..-+|....... .. ......+.+.+|..||.+++.|-.+|+|.+-+-..
T Consensus 91 -SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V--~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g- 163 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSV--SK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG- 163 (1081)
T ss_pred -ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhH--Hh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCC-
Confidence 4999999999999 88888888754 466887664432 11 12346789999999999999999999999886432
Q ss_pred CCCcceEEecccccceeEEEEccCCC----cEEEeecCCCCCeEEEEECCCCeEEE-EEecCCCeEEEEEcCCccceeee
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQF----NVLASGGGTQDGCIKIWNVQKGTCIH-SVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
+....+....+.+++|.+++|+|... .+++... ...++.+|.+. |+.+. .-...-...++.+.++|.+++.|
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEc
Confidence 22233444456788999999999742 2344433 45566666653 33333 22334557889999999999998
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
+. ++.+.+|- +.|-.+.++......|+.++..|++++++.|+.||+|.-|++-...
T Consensus 241 Gs------dk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 241 GS------DKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred cC------CCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 55 99999986 5667777777778899999999999999999999999999876543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=164.98 Aligned_cols=274 Identities=14% Similarity=0.245 Sum_probs=196.1
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCcceeeee--ecCC-CcE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETSKLIRNL--EGHD-KRV 132 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~-~~v 132 (364)
++++.+.|.|++||..+++... .++++...+..+.|.. ....+.+|+.||+|++||+++......+ ..+. .+.
T Consensus 43 vav~lSngsv~lyd~~tg~~l~--~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLE--EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred EEEEecCCeEEEEeccchhhhh--eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5556678999999999987644 4458888899999987 4568899999999999999877555433 3343 467
Q ss_pred EEEEeecCCCCEEEEee----CCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCC
Q 040533 133 ATASWNHWNGHILTSGS----QDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
.+++.+. +++++++|. .+-.|.+||++..++ +......|...|+++.|+| +.++|++|+.||.|.+||+....
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7777776 778888885 356799999998887 4445667999999999999 56799999999999999998765
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-------------CeEEEEEcCC
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-------------QICGLEWNRH 273 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------------~v~~~~~~~~ 273 (364)
....+...-.+...|.++.|...+..-+.+-+ ...+..+|+++.+.+...++.+. .+.. ..+|.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCC
Confidence 54455555557788999999988733344443 78999999999887654443220 0111 12232
Q ss_pred c-cceeeeccCCccCCCCeEEEee-CC---CCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 274 H-KEILSGHGFSSSGDGQKLCLWK-YP---HMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 274 ~-~~l~~~~~~~~~~~~~~i~i~d-~~---~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+ ...+.+.+ +...+.+.... .. ..+.+..+++ |..-|+++.|...+.++.||++||.+.+|...
T Consensus 277 ~~~~~~l~g~---~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 277 DKDTCALAGT---DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CcceEEEecc---ccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 2 22222211 11233333332 22 2445556666 66778999999999999999999999999953
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=172.59 Aligned_cols=271 Identities=16% Similarity=0.236 Sum_probs=205.3
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC--EEEEEecCCcEEEEecCCc------
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK--TLAVGYMASKLQLWDAETS------ 119 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~------ 119 (364)
+.+++++...++.++.||+|+||.+.++.+.....+ .+.|.|++|+|.+. .||++-. ..+.|-+..-|
T Consensus 405 ~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 405 SISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVG 480 (733)
T ss_pred EEEecCCcceeeecCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhc
Confidence 444445445678888999999999999999888876 45799999999765 4555433 33444433211
Q ss_pred -------------------------------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcce
Q 040533 120 -------------------------------KLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNV 165 (364)
Q Consensus 120 -------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~ 165 (364)
.-++..-.|...|..+.|+. .|++|++...+ ..|.|+++.....
T Consensus 481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~s- 558 (733)
T KOG0650|consen 481 PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKS- 558 (733)
T ss_pred chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccc-
Confidence 00122334788999999999 99999998654 4688999875543
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
...+....+.|.++.|+|...+|++++. ..|++||+... ..++.+......|..++.+|.|.++++ |+.|+.+
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~---gs~d~k~ 631 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLIL---GSYDKKM 631 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEE---ecCCCee
Confidence 3455556678999999999888988875 57999998763 345666666778999999999988888 4489999
Q ss_pred EEEECCCC-eEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-------C--Cceeeeccccccc--
Q 040533 246 KIWNVQKG-TCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-------H--MTKWGELQHQTSR-- 312 (364)
Q Consensus 246 ~i~d~~~~-~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-------~--~~~~~~~~~~~~~-- 312 (364)
..+|+.-. ++.+++..+ ..+++++|++.-.+++++ ++|+.+.|+.-. + --++..+++|...
T Consensus 632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~------sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG------SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee------cCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 99999754 455556554 679999999999999887 458999988632 1 2356678888765
Q ss_pred --eeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 313 --ILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 313 --i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
|....|+|...+|++++.||+|++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 8899999999999999999999998
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=158.19 Aligned_cols=271 Identities=16% Similarity=0.281 Sum_probs=203.9
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCc------------eeeeeeecCCCCCceEEEEc-------CCCCEEEEE
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGE------------VQKLLKVTGEDDFPTSISWS-------QDAKTLAVG 105 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~------------~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~ 105 (364)
+.....|+|++ +++-+.|+.+.+|++...- ....... .....|...+|- |+..++|+.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeec
Confidence 47778999986 8888999999999975321 0111111 234567777775 577899999
Q ss_pred ecCCcEEEEecCCcceeeeeec--CCC---cEEEEEeecCCCCEEEEeeCCCcEEEEEc-ccCcce-eee-----eeccc
Q 040533 106 YMASKLQLWDAETSKLIRNLEG--HDK---RVATASWNHWNGHILTSGSQDKSIINHDV-RVSNNV-TSR-----INAHT 173 (364)
Q Consensus 106 ~~dg~i~iw~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~dg~i~~~d~-~~~~~~-~~~-----~~~~~ 173 (364)
+.+.-|++||.-+|+....+.+ |.. ...+++|+| +|..|++|.. ..|+++|+ +.+... ... -.+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999999998877654 332 456899999 9999988764 68999998 433311 111 12336
Q ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 174 AEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 174 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
+-+.+++|+| +...+++|+....+-||.-.. ..++..+.+|.+.|+.+.|.++|+.++.-+ ..|..|..||++.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---~~pl~llggh~gGvThL~~~edGn~lfsGa--Rk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---RRPLQLLGGHGGGVTHLQWCEDGNKLFSGA--RKDDKILCWDIRY 282 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCC---CCceeeecccCCCeeeEEeccCcCeecccc--cCCCeEEEEeehh
Confidence 7789999999 556999999888887776433 456888889999999999999997655533 3789999999986
Q ss_pred C-eEEEEEecC----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-CceeeeccccccceeEEeecCCCCEEE
Q 040533 253 G-TCIHSVDTK----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 253 ~-~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
- .++..+..+ .+-.-....|.++.|++|.. +|.|++||+++ +..+..+..+...+..++++|--.++|
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t------dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpila 356 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDT------DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILA 356 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeeccCC------CccEEEEecCCCCCcccccccccccccceecCcccceee
Confidence 4 334443322 23344567799999998854 99999999998 677888888999999999999988888
Q ss_pred EEeCC
Q 040533 327 SAAAD 331 (364)
Q Consensus 327 ~~~~d 331 (364)
+++..
T Consensus 357 tssGq 361 (406)
T KOG2919|consen 357 TSSGQ 361 (406)
T ss_pred eccCc
Confidence 88754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-21 Score=163.15 Aligned_cols=271 Identities=11% Similarity=0.167 Sum_probs=181.8
Q ss_pred EEEEeCCeEEEEECCC-CceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC-cce--eeeeecCCCcEE
Q 040533 59 LAIALGLELYLWKQEN-GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET-SKL--IRNLEGHDKRVA 133 (364)
Q Consensus 59 ~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~-~~~--~~~~~~~~~~v~ 133 (364)
++...++.|.+|++.+ ++...+..+ .+.+.+..++++|++++|++++ .++.|.+|+++. ++. ..... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 4445689999999964 444333333 3345678899999999987765 578899999873 332 22222 334567
Q ss_pred EEEeecCCCCEEEEee-CCCcEEEEEcccCcce---eeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCC
Q 040533 134 TASWNHWNGHILTSGS-QDKSIINHDVRVSNNV---TSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSS 208 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 208 (364)
.++|+| ++++|++++ .++.|.+|+++..... .... .+.....+++++|+++++++++ .++.|.+||+......
T Consensus 84 ~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 84 HISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 899999 888777765 4889999999743321 1222 2233467788999998886555 5689999998753211
Q ss_pred cc----eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--Ce--EEEEEec-------CCCeEEEEEcCC
Q 040533 209 KC----LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--GT--CIHSVDT-------KAQICGLEWNRH 273 (364)
Q Consensus 209 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~--~~~~~~~-------~~~v~~~~~~~~ 273 (364)
.. ..... .......+.|+|++++++++.. .++.|.+|++.. ++ .+..+.. ......+.++|+
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 10 01111 1334678999999988777654 589999999973 32 2333321 112346889999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCCCceeeecccc---ccceeEEeecCCCCEEEEEeC-CCcEEEEEeeC
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ---TSRILELSQSPDGLTVVSAAA-DETLRFWEAFG 341 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~ 341 (364)
+++++++. ..++.|.+|++.......++..+ ......+.++|+|++|++++. +++|.+|+++.
T Consensus 239 g~~lyv~~-----~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 239 GRHLYACD-----RTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCEEEEec-----CCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 99999874 23789999998654322222222 124568999999999998775 89999999864
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-24 Score=176.21 Aligned_cols=260 Identities=15% Similarity=0.207 Sum_probs=199.5
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--------cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
+++..|.+.|+.++|.|....|++++.||.|.+|+++. -+.+.++.+|.++|.|++..+ +++.+++|+-||
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDG 366 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCc
Confidence 35668899999999999999999999999999999932 256778999999999999999 999999999999
Q ss_pred cEEEEEcccC---------cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 153 SIINHDVRVS---------NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 153 ~i~~~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
+|+.|++... ..+...+.+|.+.++.+++|+....|++++.||+++.|+...... +........+...+
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcce
Confidence 9999966422 134557789999999999999888999999999999999765432 12222222334455
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CCeEEEEEcCCccceeeeccCCccCCCCeEEEe
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~ 295 (364)
+.+-.......++.. .-+.-.++++.....+..+... ..+..+.++|.+...+++.. ++.|+++
T Consensus 445 vd~~ss~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he------d~~Ir~~ 516 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE------DRSIRFF 516 (577)
T ss_pred EeeccchhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc------CCceecc
Confidence 665444322333211 2333334444444444444321 34778899999988888754 9999999
Q ss_pred eCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc
Q 040533 296 KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 296 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
|..+++.+.....|...++++++.|+|.+|++++.||.+++|.+...........|
T Consensus 517 dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 517 DNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999999999999999999999999999999999999999998776655544444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=163.13 Aligned_cols=278 Identities=16% Similarity=0.230 Sum_probs=200.2
Q ss_pred cEEEEEeCCeEEEEECCCCc-------eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--------C---
Q 040533 57 NILAIALGLELYLWKQENGE-------VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE--------T--- 118 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--------~--- 118 (364)
.+.+++.|..|++|.+..++ +.....+..|...|+++.|+|+|+.||+|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 46778899999999876433 33445577999999999999999999999999999999765 2
Q ss_pred -----cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC
Q 040533 119 -----SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 119 -----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
....+.+.+|...|..++|+| ++.++++++-|..+++||+..+. +...+..|...+..++|.|-++++++-+.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred hCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce-eEeeccccccccceeecchhhhhhhhhcc
Confidence 223456678999999999999 99999999999999999999776 47788899999999999999999999998
Q ss_pred CCeEEEEeCCCCCCCcceE------------------Eecc--cccceeEEEEccCCCcEEEeecCCC-------CCeEE
Q 040533 194 DNLVHVWDHSKMSSSKCLH------------------RFRD--HRAAVKALAWCPYQFNVLASGGGTQ-------DGCIK 246 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~------------------~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~-------d~~i~ 246 (364)
|...+.+.+........+. .+.. -......++|+|+|. ++++.+|.. -+..+
T Consensus 186 dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tY 264 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSY 264 (434)
T ss_pred CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeE
Confidence 8877776654322211111 1100 112345678999994 555543211 12334
Q ss_pred EEECCC-CeEEEEEecC-CCeEEEEEcC------------------CccceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 247 IWNVQK-GTCIHSVDTK-AQICGLEWNR------------------HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 247 i~d~~~-~~~~~~~~~~-~~v~~~~~~~------------------~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
+|+-.. .++...+... .+...+.++| -+..++.+. .+.+++||.++..++...
T Consensus 265 vfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-------~~svyvydtq~~~P~~~v 337 (434)
T KOG1009|consen 265 VFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-------KNSVYVYDTQTLEPLAVV 337 (434)
T ss_pred eeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-------cceEEEeccccccceEEE
Confidence 444332 1222222221 2233333333 222233332 789999999998888776
Q ss_pred c-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 307 Q-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 307 ~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
. -|-..|+.++|++||..|+..|.||...+-.++..++
T Consensus 338 ~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 338 DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 5 4888999999999999999999999988887776554
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-22 Score=152.61 Aligned_cols=243 Identities=16% Similarity=0.310 Sum_probs=181.8
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECC--CCceeeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCC----
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQE--NGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAET---- 118 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~---- 118 (364)
....+++++.++++++.|+.|+|||.. ++..........|.+.|..+.|.+ -|+.+|+++.|+++.||.-..
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~ 96 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE 96 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence 345566666789999999999999964 344555556678999999999976 689999999999999997521
Q ss_pred -----cceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCcce------------eeeeecccCcEEEEE
Q 040533 119 -----SKLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNV------------TSRINAHTAEVCGLK 180 (364)
Q Consensus 119 -----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~------------~~~~~~~~~~v~~~~ 180 (364)
.....++......|+.+.|.|. -|-.|++++.||.++||+......+ ......+..+..|+.
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 1233456667889999999983 3558899999999999987543211 112224667889999
Q ss_pred EcCC---CCEEEEEeCC-----CeEEEEeCCCCC-CCcceEEecccccceeEEEEccCC---CcEEEeecCCCCCeEEEE
Q 040533 181 WSNE---GNLLASGGDD-----NLVHVWDHSKMS-SSKCLHRFRDHRAAVKALAWCPYQ---FNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 181 ~~~~---~~~l~~~~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~ 248 (364)
|+|. ..+||+|+.+ +.+.||...... ....+..+.+|..+|+.++|.|+- .+++++++ .|| |+||
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v~I~ 253 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-VRIF 253 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-EEEE
Confidence 9983 4688888866 478899866543 344566777899999999999963 35788876 899 9999
Q ss_pred ECCCC--------------------eEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 249 NVQKG--------------------TCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 249 d~~~~--------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
.++.. +.+..+. +.++|..+.|+-.|..|.+. ++||.|++|...
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt------GdDG~VRLWkan 318 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST------GDDGCVRLWKAN 318 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec------CCCceeeehhhh
Confidence 98731 1122233 44689999999988888776 569999999864
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=174.38 Aligned_cols=267 Identities=18% Similarity=0.244 Sum_probs=199.6
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCcce--eee----eecCCCcEEEEEe
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKL--IRN----LEGHDKRVATASW 137 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~v~~~~~ 137 (364)
+.+.+|++.... .+...+ .-...|+|++|+| +..++|.|+.+|.|.+||+..+.. ... ...|..++..+.|
T Consensus 222 ~~~~vW~~~~p~-~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCC-CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 479999998772 222223 3477899999999 567888899999999999987755 222 2358899999999
Q ss_pred ecCCC--CEEEEeeCCCcEEEEEcccCcceeee-----ee------cccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 040533 138 NHWNG--HILTSGSQDKSIINHDVRVSNNVTSR-----IN------AHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 138 ~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 203 (364)
.. +. .-+++++.||.|..|+++.-..+... .. .-...+++++|.+ +...+++|+++|.|.--+-.
T Consensus 300 ~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 65 43 44899999999999988644321111 11 1224678999988 55689999999998773322
Q ss_pred CCCC-C----cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-CCeEEEEEecC-CCeEEEEEcCCccc
Q 040533 204 KMSS-S----KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDTK-AQICGLEWNRHHKE 276 (364)
Q Consensus 204 ~~~~-~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~-~~v~~~~~~~~~~~ 276 (364)
.... . +....+..|.++|+++.++|.+..++.+++ |.+++||... ...++..+... ..+++++|||....
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 2111 1 224455668899999999999988888886 9999999988 66677666554 44999999999877
Q ss_pred eeeeccCCccCCCCeEEEeeCCC--CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPH--MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+++.. ..+|.+.+||+.. ..++.+...+....+.+.|++.|+.|++|...|.+.+|++...
T Consensus 456 vF~~~-----d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 VFATV-----DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEEE-----cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 66543 4599999999854 4555555555666788899999999999999999999999643
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-22 Score=153.02 Aligned_cols=268 Identities=16% Similarity=0.279 Sum_probs=202.0
Q ss_pred CCCceEEEEcC--C-CCEEEEEe----cCCcEEEEecC--Ccceeeee-ecCCCcEEEEEeecCCC-----CEEEEeeCC
Q 040533 87 DDFPTSISWSQ--D-AKTLAVGY----MASKLQLWDAE--TSKLIRNL-EGHDKRVATASWNHWNG-----HILTSGSQD 151 (364)
Q Consensus 87 ~~~v~~~~~s~--~-~~~l~~~~----~dg~i~iw~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~-----~~l~~~~~d 151 (364)
.-.++++.|+. + +.+||.|+ ..+.|.|..+. +++.+..- ..|.-+++.+.|.| +. ++||+++.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiP-d~~g~~pdlLATs~D- 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIP-DSKGVYPDLLATSSD- 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecC-CccccCcchhhcccC-
Confidence 34577888884 2 34788887 34667776654 44443322 24889999999999 44 46666543
Q ss_pred CcEEEEEcccCcceee--------eeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 152 KSIINHDVRVSNNVTS--------RINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 152 g~i~~~d~~~~~~~~~--------~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
.+++|.+...+.... .-..+..+++++.|+. +.+++.+++-|-+..|||+..+..+.....+-+|...|.
T Consensus 122 -~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 122 -FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred -eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 799999874321111 1234667999999998 778999999999999999998755555667778999999
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-c---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-T---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
.++|...+..++++.| .||.+++||++..+.-..+. . ..+...++|++....+++... -+...|.|.|++
T Consensus 201 DIaf~~~s~~~FASvg--aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~----~dS~~V~iLDiR 274 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVG--ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA----MDSNKVVILDIR 274 (364)
T ss_pred EEEeccCccceEEEec--CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh----cCCceEEEEEec
Confidence 9999999999999988 89999999999865544432 2 356889999998776665543 347889999998
Q ss_pred C-CceeeeccccccceeEEeecCC-CCEEEEEeCCCcEEEEEeeCCCCC------cceeccCCceeeeeeccCC
Q 040533 299 H-MTKWGELQHQTSRILELSQSPD-GLTVVSAAADETLRFWEAFGPSGS------GDFVSHLDGLLSLKVSPIR 364 (364)
Q Consensus 299 ~-~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~------~~~~~~~~~v~~~~~sp~~ 364 (364)
. ..++.++++|.+.|..|+|.|. ...|++++.|..+-+||+...... -.+ .-.+.|+.+.|+|.+
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQ 347 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccC
Confidence 6 4678899999999999999995 468999999999999999865441 112 246779999999864
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-21 Score=149.54 Aligned_cols=281 Identities=17% Similarity=0.282 Sum_probs=204.4
Q ss_pred cceeecccCCC----ccEEEEEe-----CCeEEEEEC--CCCceeeeeeecCCCCCceEEEEcCCC-----CEEEEEecC
Q 040533 45 DYYSNMMDWGR----NNILAIAL-----GLELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQDA-----KTLAVGYMA 108 (364)
Q Consensus 45 ~~~~~~~~~~~----~~~~~~~~-----~~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~d 108 (364)
.+...+++|+. ...+|.++ .+.|.|..+ .+++.....++ .|.-+++.+.|.|+. ++||+.+
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC-CCCCCccceEecCCccccCcchhhccc--
Confidence 34577888883 33555553 356666544 45555544443 789999999999976 3566654
Q ss_pred CcEEEEecCCc--cee--e-----eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEE
Q 040533 109 SKLQLWDAETS--KLI--R-----NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVC 177 (364)
Q Consensus 109 g~i~iw~~~~~--~~~--~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~ 177 (364)
..+++|.+... +.. . +-..+..++++..|+..+.+++.+++-|-+..|||++++. .+...+-+|..+|.
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 47999998732 111 1 1123567999999998889999999999999999999863 35667779999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeE
Q 040533 178 GLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTC 255 (364)
Q Consensus 178 ~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~ 255 (364)
.++|...+ ..+|+.+.||.|++||+|..+....+..-.....+...++|+++..+++++-. -....|.+.|++. ..+
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTP 279 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcc
Confidence 99999854 58999999999999999987765555544433567889999999989888764 2456799999987 455
Q ss_pred EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce------eeeccccccceeEEeecC-CCCEEEE
Q 040533 256 IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK------WGELQHQTSRILELSQSP-DGLTVVS 327 (364)
Q Consensus 256 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~i~~i~~~~-~~~~l~~ 327 (364)
+..+. +.+.|++++|.|....-++. +++|....+||+...-. +..+. ..++|..+.|++ .+..++.
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hict-----aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICT-----AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred eehhhcCcccccceEecCCCCceeee-----cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEE
Confidence 66665 45789999999987655443 36799999999975332 22222 457899999996 4557776
Q ss_pred EeCCCcEEE
Q 040533 328 AAADETLRF 336 (364)
Q Consensus 328 ~~~dg~i~v 336 (364)
+.. +++.+
T Consensus 354 ~~~-kklei 361 (364)
T KOG0290|consen 354 CFG-KKLEI 361 (364)
T ss_pred Eec-CeeeE
Confidence 654 34443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=154.66 Aligned_cols=230 Identities=19% Similarity=0.315 Sum_probs=175.1
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc------ceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCe
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------NVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNL 196 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 196 (364)
.+.+|.++|..++|+|.+.+.||+|++|.+|.||.+..+. ..+..+.+|...|--++|+| -.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4568999999999999999999999999999999986543 34667889999999999999 4568999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCc
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHH 274 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~ 274 (364)
|.+||+.++.. +.++. |.+.|+++.|+.+|. ++++.+ .|..|+|||.++++.+..-..+ ..-..+.|-.+|
T Consensus 156 v~iWnv~tgea---li~l~-hpd~i~S~sfn~dGs-~l~Ttc--kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 156 VSIWNVGTGEA---LITLD-HPDMVYSMSFNRDGS-LLCTTC--KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred EEEEeccCCce---eeecC-CCCeEEEEEeccCCc-eeeeec--ccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 99999888654 66665 999999999999995 555554 8999999999999998776433 335667788888
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCcee---eeccccccceeEEeecCCCCEEEEE-eCCCcEEEEEeeCCCCCcce-e
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKW---GELQHQTSRILELSQSPDGLTVVSA-AADETLRFWEAFGPSGSGDF-V 349 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~-~ 349 (364)
..+.+|.. --.+..+.+||..+.+.. .++. ..+.|.---|.+|...++.+ -.|+.|+.|.+......-.+ .
T Consensus 229 ~i~tTGfs---r~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 229 KIFTTGFS---RMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN 304 (472)
T ss_pred ceeeeccc---cccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec
Confidence 85555542 234788999998765443 2333 33456667788888887655 46999999999886642211 1
Q ss_pred --ccCCceeeeeeccCC
Q 040533 350 --SHLDGLLSLKVSPIR 364 (364)
Q Consensus 350 --~~~~~v~~~~~sp~~ 364 (364)
...++=.++.|-|.|
T Consensus 305 ~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 305 TFSSKEPQRGMGFMPKR 321 (472)
T ss_pred ccccCCccccccccccc
Confidence 124455566666654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=149.18 Aligned_cols=269 Identities=15% Similarity=0.222 Sum_probs=188.0
Q ss_pred eecccCCC--ccEEEEEeC--------CeEEEEECCCCce-------eeeeeec-CCCCCceEEEEcCCCCEEEEEecCC
Q 040533 48 SNMMDWGR--NNILAIALG--------LELYLWKQENGEV-------QKLLKVT-GEDDFPTSISWSQDAKTLAVGYMAS 109 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~--------~~i~iw~~~~~~~-------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 109 (364)
+-.++-+| .++++.... ..+.||.+....- ..+..+. .+-+.|.|+.|.|++..+++-. |.
T Consensus 66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn 144 (370)
T KOG1007|consen 66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DN 144 (370)
T ss_pred eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cC
Confidence 34455555 345554432 3678998764321 1122222 3445899999999999998875 88
Q ss_pred cEEEEecCCcce-eeeee-----cCCCcEEEEEeec-CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 110 KLQLWDAETSKL-IRNLE-----GHDKRVATASWNH-WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 110 ~i~iw~~~~~~~-~~~~~-----~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
.|.+|+++.+.. ...+. .+....++-+|+| .+++.+++. .|+++..||+++..+....-.+|...|..+.|+
T Consensus 145 ~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfN 223 (370)
T KOG1007|consen 145 NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFN 223 (370)
T ss_pred ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCC
Confidence 999999988765 33332 2556788889998 466666654 578999999998887777778899999999999
Q ss_pred CCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 183 NEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 183 ~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
|+. .+|++|+.||.|++||.|+.+ .+++.+.+|...|+++.|+|....++.+++ .|..|.+|....-.....+..
T Consensus 224 pnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~~ 299 (370)
T KOG1007|consen 224 PNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGHSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCASSVSSEQQIEF 299 (370)
T ss_pred CCceEEEEEcCCCccEEEEeccCCC--ccccccCCCceEEEEEEecCccceEEEecC--CCceeEEEecccccccccccc
Confidence 965 478999999999999998764 568899999999999999999999999987 899999998754322212211
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEee
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAF 340 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~ 340 (364)
......- ++ .+..=++= .-....+.++..|...|++++||.-.. .+|+-+.||.+.|=.+.
T Consensus 300 ~~dese~---e~--------------~dseer~k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 300 EDDESES---ED--------------EDSEERVK-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccC---cc--------------hhhHHhcc-cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1000000 00 00000000 111223456678999999999998666 56778999999886654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=154.86 Aligned_cols=269 Identities=17% Similarity=0.276 Sum_probs=197.6
Q ss_pred CCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcc---------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 87 DDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSK---------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 87 ~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
..++.++.|.++.. .+|+|+.|..|+||.+..+. ....+..|...|+++.|+| ++++|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 45789999998766 99999999999999886432 2345678999999999999 9999999999999999
Q ss_pred EEcc--------c-----C--cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccce
Q 040533 157 HDVR--------V-----S--NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAV 221 (364)
Q Consensus 157 ~d~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 221 (364)
|-.. + . -.....+.+|...|..++|+|++.++++++.|..+++||+..+ +....+..|...+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG---QLLAILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc---eeEeecccccccc
Confidence 9765 2 1 1234566789999999999999999999999999999998875 4488888999999
Q ss_pred eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------------------cC----CCeEEEEEcCCccce
Q 040533 222 KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------------------TK----AQICGLEWNRHHKEI 277 (364)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------------------~~----~~v~~~~~~~~~~~l 277 (364)
..++|.|.+.++..-+ .|...+.+++...+.+.... +. .-...++|+|+|.++
T Consensus 169 qgvawDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ceeecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 9999999885554433 57767777665443322221 11 124568899999999
Q ss_pred eeeccCCccCC---CCeEEEeeCCC-CceeeeccccccceeEEeecC------------------CCCEEEEEeCCCcEE
Q 040533 278 LSGHGFSSSGD---GQKLCLWKYPH-MTKWGELQHQTSRILELSQSP------------------DGLTVVSAAADETLR 335 (364)
Q Consensus 278 ~~~~~~~~~~~---~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~------------------~~~~l~~~~~dg~i~ 335 (364)
++..+....+. -+..++|+-.. .++...+.....+...+.|+| -+-.+|.++. +.|+
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svy 324 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVY 324 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEE
Confidence 98755332211 23455665443 334445555555555555554 2223455554 5899
Q ss_pred EEEeeCCCCCccee-ccCCceeeeeeccC
Q 040533 336 FWEAFGPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 336 vw~~~~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
|||.....++.... .|-..+++++||+.
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDD 353 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCC
Confidence 99999888776665 68999999999975
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-21 Score=152.20 Aligned_cols=208 Identities=16% Similarity=0.294 Sum_probs=167.5
Q ss_pred ecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCc-------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcE
Q 040533 83 VTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETS-------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 154 (364)
..+|.++|..++|+| +.+.+|+|++|.+|.||++..+ +.+..+.+|...|..++|+|...+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 349999999999999 5678999999999999998654 44667889999999999999888999999999999
Q ss_pred EEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc-ceeEEEEccCCCcE
Q 040533 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA-AVKALAWCPYQFNV 233 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 233 (364)
.+||+.+++.++. +. |...|.+++|+.+|.+|++.+.|..|+|||.+++. .+..-.+|.+ .-..+.|-.++. +
T Consensus 157 ~iWnv~tgeali~-l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~---~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 157 SIWNVGTGEALIT-LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT---VVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred EEEeccCCceeee-cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc---EeeecccccCCCcceeEEeccCc-e
Confidence 9999999986544 43 99999999999999999999999999999987754 3555556654 344566777775 7
Q ss_pred EEeec-CCCCCeEEEEECCCCe---EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 234 LASGG-GTQDGCIKIWNVQKGT---CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 234 ~~~~~-g~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
+.+|. ...+.++.+||..+-+ ....++..+.|.---|.++...++..+ -.|+.|+-|.+....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G-----KGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG-----KGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe-----cCCcceEEEEecCCC
Confidence 76653 2257889999976633 345566667788788889888776543 339999999987654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-21 Score=152.69 Aligned_cols=269 Identities=14% Similarity=0.186 Sum_probs=201.7
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC------cceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET------SKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
+.+|.+.|.++.|+.++++||+|+.|..+++|+++. .+.+..... |...|.|++|.. ....+++|..+++|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcceeE
Confidence 348999999999999999999999999999999863 344444433 558999999998 888999999999999
Q ss_pred EEEcccCcceeeeeeccc---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 156 NHDVRVSNNVTSRINAHT---AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
..|+++.+.+ ..+ .|. +.|..+..+|..+.|++.+.++.|.+||.+..........+.........+.|+|..+.
T Consensus 131 ~HDiEt~qsi-~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 131 KHDIETKQSI-YVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eeecccceee-eee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9999988753 322 343 48999999998899999999999999999876533334444445667889999999999
Q ss_pred EEEeecCCCCCeEEEEECCCCeE-EEEE------ec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-e
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTC-IHSV------DT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-W 303 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~-~~~~------~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~ 303 (364)
++++.+ ..+-+-+||.+.... +... .. .....+..|+|.|..+++-.. ...-.+||+.+.++ +
T Consensus 209 Li~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR------~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 209 LILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR------GKCPLYFDFISQRCFV 280 (609)
T ss_pred eEEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc------cCCCEEeeeeccccee
Confidence 999976 788899999986432 1111 11 123467899999998887543 44556778766433 3
Q ss_pred eecccc------ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC-----------------------CcceeccCCc
Q 040533 304 GELQHQ------TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG-----------------------SGDFVSHLDG 354 (364)
Q Consensus 304 ~~~~~~------~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----------------------~~~~~~~~~~ 354 (364)
.++... ...+.+++|-.| ..+++|+.+-.|++|.+..... +..+.+|.+-
T Consensus 281 ~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv 359 (609)
T KOG4227|consen 281 LKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV 359 (609)
T ss_pred EeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc
Confidence 333311 124667778654 4599999999999999864221 2356789999
Q ss_pred eeeeeeccC
Q 040533 355 LLSLKVSPI 363 (364)
Q Consensus 355 v~~~~~sp~ 363 (364)
++.|.|+|-
T Consensus 360 ~NQVRF~~H 368 (609)
T KOG4227|consen 360 PNQVRFSQH 368 (609)
T ss_pred ccceeecCC
Confidence 999999983
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-19 Score=160.03 Aligned_cols=266 Identities=27% Similarity=0.485 Sum_probs=212.6
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-eeeeeecCCC-cEEEEEe-ecCCCC-EEEEeeC-CCcEEEE
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LIRNLEGHDK-RVATASW-NHWNGH-ILTSGSQ-DKSIINH 157 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~-~l~~~~~-dg~i~~~ 157 (364)
...|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ ++ ++. +++..+. |+.+.+|
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP-DGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC-CcceEEeccCCCCccEEEE
Confidence 34788999999999999999999999999999998886 6666666443 6777777 77 665 5555444 9999999
Q ss_pred EcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 158 DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 158 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+..........+..|...|..++|+|++..+++++. |+.+++|++.. ...+..+..|...+.+++|+|++..++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC---CceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 998633446778899999999999999998888885 99999999876 34477777799999999999988645555
Q ss_pred ecCCCCCeEEEEECCCCeEEE-EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeecccccccee
Q 040533 237 GGGTQDGCIKIWNVQKGTCIH-SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQHQTSRIL 314 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~ 314 (364)
++ .|+.+++||...+.... .+..+.......|+|++..++++ +.++.+++|+...... +..+..|...+.
T Consensus 217 ~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (466)
T COG2319 217 GS--SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG------SSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288 (466)
T ss_pred ec--CCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEe------cCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence 34 89999999998887777 45544332222899999777655 4499999999987665 444467889999
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee--ccCCceeeeee
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV--SHLDGLLSLKV 360 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~ 360 (364)
++.|+|++..+++++.|+.+.+|+........... .|...+..+.|
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE
Confidence 99999988899889999999999888877666655 67777888887
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-18 Score=154.82 Aligned_cols=298 Identities=28% Similarity=0.497 Sum_probs=219.5
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCC-CCceEEEE-cCCCC-EEEEEec-CCcEEEEecCC-cc
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGED-DFPTSISW-SQDAK-TLAVGYM-ASKLQLWDAET-SK 120 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~-s~~~~-~l~~~~~-dg~i~iw~~~~-~~ 120 (364)
+..+.+.+. .++..+.++.+.+|+...+. .....+..+. ..+..+.+ ++++. .++..+. |+.+.+|+... ..
T Consensus 68 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 146 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146 (466)
T ss_pred EEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe
Confidence 444555543 35556679999999998875 1122222322 36777777 88887 5555444 89999999988 78
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVH 198 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 198 (364)
....+..|...|..++|+| ++..+++++. |+.+++|++.... ....+..|...+.+++|+|++. .+++++.|+.++
T Consensus 147 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred EEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 8888899999999999999 8888888885 9999999998644 3666777999999999999987 555558999999
Q ss_pred EEeCCCCCCCcceE-EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-EEEE-ecCCCeEEEEEcCCcc
Q 040533 199 VWDHSKMSSSKCLH-RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC-IHSV-DTKAQICGLEWNRHHK 275 (364)
Q Consensus 199 iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~-~~~~~v~~~~~~~~~~ 275 (364)
+||... ...+. .+..|.... ...|+|++ .++++++ .|+.+++|++..... ...+ .+...+.++.|+|++.
T Consensus 225 ~wd~~~---~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 225 LWDLST---GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred EEECCC---CcEEeeecCCCCcce-eEeECCCC-CEEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 998763 23344 567777765 44899998 5555655 899999999987664 4444 3457899999999888
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCCCEEEEE-eCCCcEEEEEeeCCCCCcceeccC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDGLTVVSA-AADETLRFWEAFGPSGSGDFVSHL 352 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~ 352 (364)
.++++.. ++.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++......... ...
T Consensus 298 ~~~~~~~------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~ 370 (466)
T COG2319 298 LLASGSS------DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL-EGH 370 (466)
T ss_pred EEEEeeC------CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEe-cCC
Confidence 8887543 6779999998887777665 787789999994343556655 68899999999887722222 222
Q ss_pred Cceeeeeecc
Q 040533 353 DGLLSLKVSP 362 (364)
Q Consensus 353 ~~v~~~~~sp 362 (364)
..+..+.+++
T Consensus 371 ~~~~~~~~~~ 380 (466)
T COG2319 371 SNVLSVSFSP 380 (466)
T ss_pred ceEEEEEECC
Confidence 2267777665
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=165.76 Aligned_cols=235 Identities=11% Similarity=0.150 Sum_probs=167.2
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCC
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (364)
+..|.+||.+... .+.+..+...+...+|+| +++.|+.++.+ ..|++||+.++... .+....+....++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCC
Confidence 4689999986544 556667888899999999 89888887644 36999999876531 12222233446899999
Q ss_pred CCEEEEEe-CCCeEEEE--eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEe
Q 040533 185 GNLLASGG-DDNLVHVW--DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVD 260 (364)
Q Consensus 185 ~~~l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~ 260 (364)
|+.|+.+. .+|.+.|| |+... ....+..+...+....|+|+++.+++++. .++...+|++.. +.....+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~~~~~l~ 332 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGGGASLVG 332 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEec
Confidence 99888765 67766555 55432 24455556677889999999987777654 677788887643 22222232
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
... ....|+|+|+.++... ...+.+||+.+++.......+ ....+.|+|||++|+.++.+|.+.+|++.
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~-------~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMIN-------GDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCC--CCccCCCCCCEEEEEc-------CCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 222 4678999999998764 234667999887654332222 23568899999999999999999988874
Q ss_pred --CCCCCcceeccCCceeeeeeccC
Q 040533 341 --GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 341 --~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.....+..|.+.+...+|||.
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccCCC
Confidence 46667778788888999999995
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=146.81 Aligned_cols=202 Identities=27% Similarity=0.365 Sum_probs=163.1
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCcee-eeee---ecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCc
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQ-KLLK---VTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~-~~~~---~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~ 119 (364)
.++++.|.|+. .++.-.++.|.+|++..+... .... ..++....++-+|+| +|+.+++.+ |+++..||+++.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch
Confidence 36889999964 555556999999999877542 1111 114566788899998 888888874 899999999998
Q ss_pred ceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeE
Q 040533 120 KLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLV 197 (364)
Q Consensus 120 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 197 (364)
++...+. +|...|..+.|+|....+|++|+.||.|++||.+..+.++..+.+|...|.++.|+| ..+++++|+.|..|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 8776664 688899999999966678999999999999999988888999999999999999999 45689999999999
Q ss_pred EEEeCCCCCC--------------------------CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 198 HVWDHSKMSS--------------------------SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 198 ~iwd~~~~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
.+|....... ...+.++..|.+.|++++|+.-.+.++++-+ .||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 9997543210 1224456779999999999999999999987 99999886654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=156.65 Aligned_cols=259 Identities=19% Similarity=0.332 Sum_probs=187.9
Q ss_pred ecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-------CCCEEEEEecCCcEEEEecCCcc
Q 040533 49 NMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-------DAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
+++.|+.. .++.++.|..+.+|.-.+.+......++. ..-.+.+..-+ ....++.++.||.+.|.+ +.++
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~-df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~r 95 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD-DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSAR 95 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCc-ccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccch
Confidence 47888774 57788888877777654444333333221 11222222222 224688888999999997 5677
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.-+.+..|.+.+.+-.|+| +|.-|+++++||.|++|.-. +- +...+.....+|.|++|.|+.+-++.+. .+.+.|=
T Consensus 96 VE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrs-GM-LRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK 171 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRS-GM-LRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIK 171 (737)
T ss_pred hhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEecc-ch-HHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence 7788899999999999999 99999999999999999843 32 2344455678899999999877665554 3456665
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeee
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
-+... ..+...+.|.+-|.++.|++.. .++++|| +|-..++||-.......+-.+..+|++++|+|+ +.++.+
T Consensus 172 pL~~n---~k~i~WkAHDGiiL~~~W~~~s-~lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 172 PLAAN---SKIIRWRAHDGLVLSLSWSTQS-NIIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred ecccc---cceeEEeccCcEEEEeecCccc-cceeecC--CceeEEeecccCcccccCChhccceeeeeeccc-cceeee
Confidence 54432 3367788999999999999987 7889987 999999999875555555556788999999999 444444
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+ -+.+++= ....+.|..++||+||..++.|...|.+.+=.
T Consensus 245 S-------~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 245 S-------YNTARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred e-------eeeeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 2 3344411 12457899999999999999999999876543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-21 Score=148.98 Aligned_cols=243 Identities=18% Similarity=0.312 Sum_probs=175.7
Q ss_pred CCCcceeecccCCCc----cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEec
Q 040533 42 LRNDYYSNMMDWGRN----NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDA 116 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~----~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~ 116 (364)
....+|..+-.+... -+++++.-|.|+|.|+.+++..... .+|...|+.+.+.|+. +++++++.|..|++|++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~--~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY--RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce--eccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 444555444444332 2556667799999999998875544 4999999999999965 78999999999999999
Q ss_pred CCcceeeee---ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce---------------------------e
Q 040533 117 ETSKLIRNL---EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV---------------------------T 166 (364)
Q Consensus 117 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---------------------------~ 166 (364)
+++.++..+ .+|...|.++.|++ ++.+|++++.|.++++|++...+-. .
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 999998876 46999999999999 9999999999999999999743200 0
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-C----------CcceEEecccccceeEE--EEccCCCcE
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS-S----------SKCLHRFRDHRAAVKAL--AWCPYQFNV 233 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~----------~~~~~~~~~~~~~v~~~--~~~~~~~~~ 233 (364)
....-|...|-|+.|- |+++++-+-++.|..|..-... . ...+..+.-....++-+ +|+|.+ .+
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~ 321 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KM 321 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HH
Confidence 0122355566666665 5688998889999999862111 1 11122333333445444 456666 45
Q ss_pred EEeecCCCCCeEEEEECCCCeEE--EEEe---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 234 LASGGGTQDGCIKIWNVQKGTCI--HSVD---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
++.|. +.|.|.+||++...+. .++. ....|...+|+.++..|+... +|+.|.-||..
T Consensus 322 la~gn--q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc------dd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGN--QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC------DDGTVWRWDRV 383 (385)
T ss_pred Hhhcc--CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe------CCCcEEEEEee
Confidence 66654 8999999999987653 2222 236699999999999998874 49999999853
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=147.93 Aligned_cols=231 Identities=17% Similarity=0.274 Sum_probs=172.6
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCcceee-eeeccc-CcE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNVTS-RINAHT-AEV 176 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~-~~v 176 (364)
..+|++..+|.|++||..+++.+..++++...++.+.|... ..+.+.+++.||+|++||+++...... ....+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57899999999999999999999999999999999999763 467899999999999999998764332 333444 466
Q ss_pred EEEEEcCCCCEEEEEe----CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 177 CGLKWSNEGNLLASGG----DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.+++.+..++.+++|. .+-.|.+||+|..+.. .-.-...|...|+++.|+|..+.++++|+ .||.|.+||+..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLFDTKK 197 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEeeecCC
Confidence 7787776788888886 4678999999976431 22334569999999999999999999987 999999999976
Q ss_pred Ce----EEEEEecCCCeEEEEEcCCc--cceeeeccCCccCCCCeEEEeeCCCCceeeeccccc------------ccee
Q 040533 253 GT----CIHSVDTKAQICGLEWNRHH--KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT------------SRIL 314 (364)
Q Consensus 253 ~~----~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~------------~~i~ 314 (364)
.. ++.++.+.+.|..+.|..++ +.....+ .....+|+++.+.+...+.... ..+.
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH-------~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH-------METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEc-------cCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 42 34556677889999999988 6444443 8899999999887665544221 1122
Q ss_pred EEeecCCCCEEEEEeC-CCcEEEEEee
Q 040533 315 ELSQSPDGLTVVSAAA-DETLRFWEAF 340 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~-dg~i~vw~~~ 340 (364)
......++..++.++. -|...++-+.
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEee
Confidence 2222234456666555 5666666555
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=140.99 Aligned_cols=292 Identities=16% Similarity=0.198 Sum_probs=196.1
Q ss_pred CCCCcEEeeCCCCCCCcceeecccCCC-ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec
Q 040533 29 DFQKEARILDAPNLRNDYYSNMMDWGR-NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM 107 (364)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 107 (364)
.|..|+.++. |.. -.++++.|.. ++++++...|.|.+|++++......+.+ .+...|+.+.--|+ ..|.+-+.
T Consensus 2 ~pPdP~fvLR-p~~---~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~-d~l~tqgR 75 (323)
T KOG0322|consen 2 VPPDPFFVLR-PHS---SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPN-DSLDTQGR 75 (323)
T ss_pred CCCCCeeEec-ccc---chheehhhccchhhhcccccceEEEEEeecCccchhhhh-hccceeeceeecCC-cchhhcCC
Confidence 4567777777 322 1355666655 4688888999999999999876655553 56788999998887 45777779
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeec-------CCC-CEEEEeeCCCc-EEEEEcccCcceeee----eecccC
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNH-------WNG-HILTSGSQDKS-IINHDVRVSNNVTSR----INAHTA 174 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~-~~l~~~~~dg~-i~~~d~~~~~~~~~~----~~~~~~ 174 (364)
|+.+.+|++..+..+.. |.-.++++-|.+ ... ..++.-++... +.+-|.....+ +.. -.+..+
T Consensus 76 d~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq-v~i~dd~~~~Klg 151 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ-VQIADDSERSKLG 151 (323)
T ss_pred CceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce-eEccCchhccccC
Confidence 99999999987654433 333444444432 011 11222111111 11111111100 110 112345
Q ss_pred cEEEEEEcC-CC--CEEEEEeCCCeEEEEeCCCCC-------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 175 EVCGLKWSN-EG--NLLASGGDDNLVHVWDHSKMS-------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 175 ~v~~~~~~~-~~--~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
.+.+..+.. ++ -+++.|.++|.+.+||+.... ..+.......|..+|.++.+.+.-..= ++|+ .+..
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG-isgg--a~dk 228 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG-ISGG--ADDK 228 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC-cCCC--cccc
Confidence 666666533 22 267778899999999998742 123344455688999999998654322 3333 6778
Q ss_pred EEEEECCCC--eEE--EEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 245 IKIWNVQKG--TCI--HSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 245 i~i~d~~~~--~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
+..|++... .+. ..+. .+..+..+.+-||++.++++. .|+.|++|..++..++..++.|.+.|.+++|+
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG------WD~RiRVyswrtl~pLAVLkyHsagvn~vAfs 302 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG------WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS 302 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc------cCCcEEEEEeccCCchhhhhhhhcceeEEEeC
Confidence 889988643 221 1122 234588899999999999885 49999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEe
Q 040533 320 PDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 320 ~~~~~l~~~~~dg~i~vw~~ 339 (364)
|+...+|+++.|++|.+|++
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999986
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=162.60 Aligned_cols=285 Identities=18% Similarity=0.271 Sum_probs=202.4
Q ss_pred eecccCCC-ccEEEEE-eCCeEEEEECCCCceeeeeeec-CCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCc---
Q 040533 48 SNMMDWGR-NNILAIA-LGLELYLWKQENGEVQKLLKVT-GEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETS--- 119 (364)
Q Consensus 48 ~~~~~~~~-~~~~~~~-~~~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~--- 119 (364)
...+.++| ...++++ ....|.+||.+.++...-+... .....|+.+.+-. |..++++|+.||.|+||+-...
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 34455666 3344444 4579999999988864444321 2245788888865 4568999999999999974322
Q ss_pred --ceeeeee---c----CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEE
Q 040533 120 --KLIRNLE---G----HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLA 189 (364)
Q Consensus 120 --~~~~~~~---~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 189 (364)
+.+.-.. + ..+.-.-+.|....|.++++ +.-..|+|||......+.....+.+..|+++.-+- .|+.++
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEec-CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 2222211 1 11111346787745555554 44789999999877655555555566677776544 568999
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecccccc--eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE--EEe----c
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA--VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH--SVD----T 261 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~----~ 261 (364)
.|..||.|++||.|.......+...+.|+.. |..+.+.+.|-.-+++|+ .||.|++||++...... ++. .
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999987666677888888887 999999998866577765 99999999999742221 121 2
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-------cccceeEEeecCCCCEEEEEeCCCcE
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-------QTSRILELSQSPDGLTVVSAAADETL 334 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~dg~i 334 (364)
++..+++..++....+++|+ .+.|+||++.. +.+..++. ..+.+.+++|+|-.-+||+|+.|.+|
T Consensus 1304 Gs~lTal~VH~hapiiAsGs-------~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGS-------AQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred CccceeeeeccCCCeeeecC-------cceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 34699999999999999884 48999999753 33333332 23467999999999999999999999
Q ss_pred EEEEeeCCC
Q 040533 335 RFWEAFGPS 343 (364)
Q Consensus 335 ~vw~~~~~~ 343 (364)
.||....+.
T Consensus 1376 ~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1376 SIYSCEKPR 1384 (1387)
T ss_pred EEeecCCcC
Confidence 999877654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=158.46 Aligned_cols=252 Identities=18% Similarity=0.282 Sum_probs=186.9
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 168 (364)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|...|.+++|+. +|+.+++|+.|..|.+|...-... .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~-L-- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGI-L-- 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccce-e--
Confidence 789999999999888875 56899999999999999999999999999999 999999999999999999764442 2
Q ss_pred eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEE
Q 040533 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
...|.+.|.||.|+|-...|++++-. ..-+|..... .+.+.+ ....+.+++|..||. +++.|- .+|+|.+-
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK----~V~K~k-ss~R~~~CsWtnDGq-ylalG~--~nGTIsiR 159 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK----SVSKHK-SSSRIICCSWTNDGQ-YLALGM--FNGTISIR 159 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-hccccChhhh----hHHhhh-hheeEEEeeecCCCc-EEEEec--cCceEEee
Confidence 23699999999999988899998754 3667875432 122222 346788999999995 555554 79999998
Q ss_pred ECCCCeEEEEEe----cCCCeEEEEEcCCcc-----ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 249 NVQKGTCIHSVD----TKAQICGLEWNRHHK-----EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 249 d~~~~~~~~~~~----~~~~v~~~~~~~~~~-----~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
+- +++..-.++ ..++|.+++|+|... .+++. ..+.++.+|.+ +|+.+..-+.-.-...++.+.
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~------DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf 231 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA------DWGQTLSFYQL-SGKQIGKDRALNFDPCCISYF 231 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE------eccceeEEEEe-cceeecccccCCCCchhheec
Confidence 64 444444443 246799999999643 12222 12444444444 244444333333345789999
Q ss_pred CCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 320 PDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 320 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++|.++..|+.|+.+.+|- +.+-.+.++......|+.++..|.
T Consensus 232 ~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN 274 (1081)
T ss_pred cCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC
Confidence 9999999999999999996 344555666556778888888875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-19 Score=156.86 Aligned_cols=286 Identities=13% Similarity=0.195 Sum_probs=201.3
Q ss_pred ecccCCCc-cEEEEEeCCeEEEEECCCCceeeeee---ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--c--c
Q 040533 49 NMMDWGRN-NILAIALGLELYLWKQENGEVQKLLK---VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--S--K 120 (364)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~--~ 120 (364)
..+..++. .+....-+..+.+|+..+.. ..... -..|.-.+++.++||+++++|+|..||.|.+|.--. + .
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 33444443 35556667788999887754 11111 125677799999999999999999999999997432 1 2
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
....+.=|...|.+++|++ +|.+|++|+.+|.+.+|.+.+++ .+.+..-.++|..+.++||+.+.+....|..|.+.
T Consensus 243 t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 3455667889999999999 99999999999999999999887 45566677899999999999999999999999999
Q ss_pred eCCCCCCCcceEEecc--------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-----------
Q 040533 201 DHSKMSSSKCLHRFRD--------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----------- 261 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----------- 261 (364)
...+......+..+.. ..+-.+.++++|.-+.++..+ ..|.|.+||+.+.+.+..+..
T Consensus 320 ~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 320 KASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred eccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 8755443333333322 244567888999554444443 789999999987665544421
Q ss_pred -CCCeEEEEEcCCccceeeec-----------------------------------------------------cCCccC
Q 040533 262 -KAQICGLEWNRHHKEILSGH-----------------------------------------------------GFSSSG 287 (364)
Q Consensus 262 -~~~v~~~~~~~~~~~l~~~~-----------------------------------------------------~~~~~~ 287 (364)
.-.+++++.+..|.++++.. ...+.+
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec
Confidence 01234444444444433321 112456
Q ss_pred CCCeEEEeeCCCCceee----------eccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 288 DGQKLCLWKYPHMTKWG----------ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~~~----------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
.||.+++|-+...+.+. .-.-|..++++++|+.||. +++.+.|++|.+||..+.
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 79999999884332221 1113678899999999995 555667889999999884
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-19 Score=134.48 Aligned_cols=231 Identities=15% Similarity=0.235 Sum_probs=171.2
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCC---------c-ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAET---------S-KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
.|.+-+|+|.+++|++|..+|.|.++.+++ + ..+...++|+++++.++|. ..+|++|+. |.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEee
Confidence 466778999999999999999999998853 1 2344557899999999994 566777664 9999887
Q ss_pred cccCcc------eee-eeeccc-----CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEE
Q 040533 159 VRVSNN------VTS-RINAHT-----AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226 (364)
Q Consensus 159 ~~~~~~------~~~-~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 226 (364)
.+.... ..+ ....|. -.|++|...|..+-++.++.|+.++-||++++ +....+++|.+.|.++.-
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G---~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG---RIQREYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC---EEEEEEcCCcceeeeeee
Confidence 754321 000 111122 36899999997777777778999999998875 558889999999999988
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-----------CeEEEEEcCCccceeeeccCCccCCCCeEEEe
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-----------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~ 295 (364)
-.....++ +|+ +||++++||+++++++..+.... .|. +..-+...+++|. ...+.+|
T Consensus 165 R~~~~qil-sG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGg-------Gp~lslw 232 (325)
T KOG0649|consen 165 RNANGQIL-SGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGG-------GPKLSLW 232 (325)
T ss_pred cccCccee-ecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecC-------CCceeEE
Confidence 44443554 544 99999999999999998875321 133 3334556777764 7889999
Q ss_pred eCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 296 KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 296 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.++..++...+.- ..++..+.|..| .+++++..+.|.-|.+..
T Consensus 233 hLrsse~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 233 HLRSSESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eccCCCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 9999888877753 356778888544 677888777888887654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=144.39 Aligned_cols=283 Identities=13% Similarity=0.182 Sum_probs=204.8
Q ss_pred ceeecccCCCcc--EEEEEeCCeEEEEECCCC------ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC
Q 040533 46 YYSNMMDWGRNN--ILAIALGLELYLWKQENG------EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE 117 (364)
Q Consensus 46 ~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 117 (364)
-+++++.|+.++ +++++.|..+.+|++... +.+.+.. ..|...|.|++|....++|.+|..+++|...|++
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc-CccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence 368899998754 455566789999997642 2222222 2566899999999988999999999999999999
Q ss_pred Ccceeeeeec--CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee--eecccCcEEEEEEcCC-CCEEEEEe
Q 040533 118 TSKLIRNLEG--HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNE-GNLLASGG 192 (364)
Q Consensus 118 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~ 192 (364)
+.+.+..+.. ..+.|+.+..+| ..+.|++.+.++.|.+||.+........ ..........+.|+|. ..+|++.+
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred cceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 9988877652 234899999999 7999999999999999999876532222 2223456778899994 56888888
Q ss_pred CCCeEEEEeCCCCCCCcceE----EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-EEEEecC-----
Q 040533 193 DDNLVHVWDHSKMSSSKCLH----RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC-IHSVDTK----- 262 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~----- 262 (364)
..+-+-+||.+......... .+......-.++.|+|.|..+++.- ....-.+||+-+.++ +..+.+.
T Consensus 215 ~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR---R~~~P~~~D~~S~R~~V~k~D~N~~GY~ 291 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR---RGKCPLYFDFISQRCFVLKSDHNPNGYC 291 (609)
T ss_pred ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh---ccCCCEEeeeecccceeEeccCCCCcce
Confidence 88999999998754321111 1111122336788999998888764 345567788877443 3444432
Q ss_pred --CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-----------------------ceeeeccccccceeEEe
Q 040533 263 --AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-----------------------TKWGELQHQTSRILELS 317 (364)
Q Consensus 263 --~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-----------------------~~~~~~~~~~~~i~~i~ 317 (364)
..+.+++|..+.. +++| +++-.|++|.+... +.+..+++|.+-+..+.
T Consensus 292 N~~T~KS~~F~~D~~-v~tG------SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 292 NIKTIKSMTFIDDYT-VATG------SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred eeeeeeeeeeeccee-eecc------CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 2356667765544 5554 56889999987531 12345779999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEee
Q 040533 318 QSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|+|...+|++.+..+.+++|.-.
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecCCcceEeccchhhheeccccc
Confidence 99999999999999999999744
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=156.94 Aligned_cols=234 Identities=12% Similarity=0.041 Sum_probs=163.1
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
..|++||....... .+..|...+.+++|||||+.|+.++.+ ..|++||+.+++.... ....+....++|+| +
T Consensus 184 ~~i~i~d~dg~~~~---~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP-D 258 (429)
T PRK01742 184 YEVRVADYDGFNQF---IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP-D 258 (429)
T ss_pred EEEEEECCCCCCce---EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC-C
Confidence 58999998766532 234677889999999999999987654 3699999988754222 22223344689999 8
Q ss_pred CCEEEEe-eCCCcEEEE--EcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEeccc
Q 040533 142 GHILTSG-SQDKSIINH--DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 142 ~~~l~~~-~~dg~i~~~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
++.|+.+ +.+|.+.+| |+.++. ...+..+...+....|+|||+.|+.++ .++...+|+++..... ...+ .+
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~--~~~l-~~ 333 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG--ASLV-GG 333 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEe-cC
Confidence 8877765 468876666 544433 444556667788999999999777655 5778888876543221 2222 23
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.. ....|+|+++.+++++ .+ .+.+||+.+++...... ......+.|+|+|+.++.+.. ++...+|++
T Consensus 334 ~~--~~~~~SpDG~~ia~~~---~~-~i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~------~g~~~~l~~ 400 (429)
T PRK01742 334 RG--YSAQISADGKTLVMIN---GD-NVVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSST------QGLGKVLQL 400 (429)
T ss_pred CC--CCccCCCCCCEEEEEc---CC-CEEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEc------CCCceEEEE
Confidence 33 4578999997766654 24 46679998887543322 223467889999999998754 666676664
Q ss_pred --CCCceeeeccccccceeEEeecCC
Q 040533 298 --PHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 298 --~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
.+++....+..|.+.+...+|+|-
T Consensus 401 ~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEEccCCCCCCCCcccCCC
Confidence 467788888888888999999985
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=138.62 Aligned_cols=231 Identities=13% Similarity=0.253 Sum_probs=176.3
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCc-eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec-CCc--ce
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGE-VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA-ETS--KL 121 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~-~~~--~~ 121 (364)
+.+.+|++++ .+|++ ....|.||.....+ .....++..|...|+.++|+|..+.|++++.|..-+||.. ..+ +.
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkp 92 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKP 92 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecc
Confidence 7888999875 55555 55699999988887 6777888899999999999999999999999999999998 333 33
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce---eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV---TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
.-.+..++..++++.|+| .++.|++|+....|.||-++..+.- ...-..+...|++++|+|++-+|+.|+.|+..+
T Consensus 93 tlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 93 TLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred ceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence 344556889999999999 9999999999999999988765532 122345678899999999999999999999999
Q ss_pred EEeCC-----CCCC----------CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEE-ec
Q 040533 199 VWDHS-----KMSS----------SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSV-DT 261 (364)
Q Consensus 199 iwd~~-----~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~-~~ 261 (364)
++..- .... +..+..+....+.+..+.|+|+|..+...+ .|..+.+-|..... .+... ..
T Consensus 172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~---Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG---HDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec---CCCceEEeecCCCchhccchhhc
Confidence 98632 1111 122333334567899999999997666655 69999999987664 22222 23
Q ss_pred CCCeEEEEEcCCccceeeecc
Q 040533 262 KAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~ 282 (364)
+-+..++.|-.+...+++|..
T Consensus 249 ~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 249 QLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred cCCceeeEeecCCceeecCCC
Confidence 356777777777766666653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-21 Score=167.09 Aligned_cols=262 Identities=15% Similarity=0.248 Sum_probs=195.8
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
.+.+|...|+|+.|...|.++++|+.|..++||..+++.++....+|.+.|+.++.+. +.-++++++.|..|++|.+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 4558999999999999999999999999999999999999999999999999999988 888999999999999999998
Q ss_pred CcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccCCCcEEEeecCC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+.. +..+.+|++.|++++|+|-. +.+.||++++||.+-......-..+. .....+.++.|...+. -+.+++
T Consensus 264 ~~p-vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f~Tgs-- 335 (1113)
T KOG0644|consen 264 GAP-VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-RFLTGS-- 335 (1113)
T ss_pred Cch-HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-cccccc--
Confidence 775 77888999999999999954 67889999999987211100000011 1224456666766663 344543
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCc-cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH-KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
.|+.-..|.+.-..... ..+.-+..+.+- .+.++. -.+-.+++|++.++.....+.+|...+..+.++
T Consensus 336 ~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~a------r~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTA------RNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred CCcccccchhhHhhhhc-----cceEEEeccccccccceee------eeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 78887777654211100 000001111111 222222 227789999999999999999999999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 320 PDGL-TVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 320 ~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|-.. ...+++.||...|||+-.+..++.+....+.+.+-+||+.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence 9654 5578899999999999999887766544556666777763
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-18 Score=145.83 Aligned_cols=250 Identities=9% Similarity=0.113 Sum_probs=166.1
Q ss_pred EEEecCCcEEEEecCC-cc--eeeeeecCCCcEEEEEeecCCCCEEEEee-CCCcEEEEEcccCcce--eeeeecccCcE
Q 040533 103 AVGYMASKLQLWDAET-SK--LIRNLEGHDKRVATASWNHWNGHILTSGS-QDKSIINHDVRVSNNV--TSRINAHTAEV 176 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~--~~~~~~~~~~v 176 (364)
++...++.|.+|++.+ ++ .+..+. +.+....++++| ++++|++++ .++.|.+|+++....+ .... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p 82 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSP 82 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCc
Confidence 3335689999999964 33 444454 345677899999 888876664 5788999999733221 1111 223456
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEeCCCCC-CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 177 CGLKWSNEGNLLASGGD-DNLVHVWDHSKMS-SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
..++|+|+++++++++. ++.|.+|++.... ....+..+. +......++++|+++.++++.. .++.|.+||+.+..
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d~~~~g 159 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL--KEDRIRLFTLSDDG 159 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC--CCCEEEEEEECCCC
Confidence 78999999998888764 7899999986422 112233222 2234677889999988887765 78999999997633
Q ss_pred EEE-------EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC--Cc--eeeecccc------ccceeEEe
Q 040533 255 CIH-------SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH--MT--KWGELQHQ------TSRILELS 317 (364)
Q Consensus 255 ~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~--~~--~~~~~~~~------~~~i~~i~ 317 (364)
.+. ..........+.|+|+|+++++.. ..++.|.+|++.. ++ .+..+..+ ......+.
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~-----~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN-----ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 221 122345567899999999998874 3389999999973 22 23333211 11234688
Q ss_pred ecCCCCEEEEEeC-CCcEEEEEeeCCCCCcceecc---CCceeeeeeccC
Q 040533 318 QSPDGLTVVSAAA-DETLRFWEAFGPSGSGDFVSH---LDGLLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~---~~~v~~~~~sp~ 363 (364)
++|+|++|+++.. ++.|.+|++.......++.++ ......++|+|.
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d 284 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS 284 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence 9999999998854 789999999765433333322 123456777764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-18 Score=134.72 Aligned_cols=242 Identities=13% Similarity=0.187 Sum_probs=180.7
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcc
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK--SIINHDVRVSNN 164 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~ 164 (364)
...+..+.|+.+...|..|+.|| .++|+.+..............|-.+-| ...++|..+.+. .+++++.+.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLF---SSSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLF---SSSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeec---ccceeEEEecCCCceEEEEEcccCce
Confidence 44567777999999999999887 788887765553333334455666777 556676666544 488888875553
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
+-.. ....+|.++.++.+ .|+++-++. |+|||+++.+....+.....+...+.++++++.+.++..=+ ....|.
T Consensus 81 ICe~--~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~-s~t~Gd 154 (391)
T KOG2110|consen 81 ICEI--FFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG-STTSGD 154 (391)
T ss_pred EEEE--ecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC-CCCCce
Confidence 2222 35677999988754 677676554 99999998766444444444556677777777664554443 346799
Q ss_pred EEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc--cceeEEeecCC
Q 040533 245 IKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT--SRILELSQSPD 321 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~ 321 (364)
|.+||+.+-+.+..+.. .+++.+++|+++|.+++++.. .+..|+++.+.+++.+.+++... ..|.+++|+|+
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe-----KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE-----KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc-----CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 99999999999888865 588999999999999999852 34458999999999999997543 46889999999
Q ss_pred CCEEEEEeCCCcEEEEEeeCCC
Q 040533 322 GLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
+++|++.|..++|++|.++...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEecCCCeEEEEEecccc
Confidence 9999999999999999998654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-21 Score=165.13 Aligned_cols=280 Identities=14% Similarity=0.214 Sum_probs=215.7
Q ss_pred CCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 42 LRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.+.+|+..++-+..++++++.|..++||..+++.+ +..+.||.+.|+.++.+.+..++|+++.|..|++|.+.++..
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 445667777877777899999999999999888875 455669999999999999999999999999999999999999
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee---ee-cccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR---IN-AHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
+..+.+|++.|++++|+| - .+.+.||++++||.+-.. .... .. ....-+.++.|-.++..+++++.|+.-
T Consensus 267 vsvLrghtgavtaiafsP-~----~sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea 340 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSP-R----ASSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA 340 (1113)
T ss_pred HHHHhccccceeeeccCc-c----ccCCCCCceEeccccccc-cccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence 999999999999999999 3 378899999999987211 1111 00 122456677777788899999999998
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccc
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKE 276 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 276 (364)
..|.+.... .+...+.-+.++.+-..+.+++- .+-.+.+|++.+|...+.+..+ ..+..+.++|-+..
T Consensus 341 ~n~e~~~l~---------~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 341 RNHEFEQLA---------WRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ccchhhHhh---------hhccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 888754321 12222222222223334445543 6888999999999888776554 66899999998888
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
++... +.||...|||+-.+.+++.+......+..-+||++|..++....-|.++|.....++..
T Consensus 410 i~msa-----g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 410 IAMSA-----GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred hhhhc-----cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 77544 34999999999999888776544567788899999999998888899999887655443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-20 Score=153.24 Aligned_cols=251 Identities=14% Similarity=0.164 Sum_probs=182.1
Q ss_pred eeecccCCC--ccEEEEEeCCeEEEEECC------CCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC
Q 040533 47 YSNMMDWGR--NNILAIALGLELYLWKQE------NGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET 118 (364)
Q Consensus 47 ~~~~~~~~~--~~~~~~~~~~~i~iw~~~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 118 (364)
++.++.+++ ..+++++.++.|.+|+++ ...+.++.++.+|.++|.|++..++++.+.+|+-||+|+.|++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 466677766 458899999999999993 235677888999999999999999999999999999999996542
Q ss_pred c----------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC-CE
Q 040533 119 S----------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG-NL 187 (364)
Q Consensus 119 ~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 187 (364)
. .....+.+|.+.|+.+++++ ..+.|++++.||+++.|+...............+....+.+-... ..
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~ 454 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAH 454 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHh
Confidence 1 23456789999999999999 888899999999999999876554222211222334556554432 12
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEecc-------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRD-------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
.++ +.....+++.+......+..+.. ....+..+.++|.. .+..++. .|+.|+++|..+++.+....
T Consensus 455 ~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h--ed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 455 SLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH--EDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred hhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecc--cCCceecccccccccchhee
Confidence 222 22333333332222222222221 12346678888888 4555554 89999999999999988765
Q ss_pred c-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc
Q 040533 261 T-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT 310 (364)
Q Consensus 261 ~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 310 (364)
. ...++++++.|+|.+++++.. |+.+++|.+....++.....|.
T Consensus 529 a~~~svtslai~~ng~~l~s~s~------d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMSGSH------DGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eccceecceeecCCCceEEeecC------Cceeehhhccchheeecccccc
Confidence 4 477999999999999999865 9999999998877776665554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-18 Score=150.54 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=163.2
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
..|.+||.. +...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.++.. ..+..+.+....+.|+|+|
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCC
Confidence 358999985 444455666778899999999 88888877643 3699999986653 2233344455678999999
Q ss_pred CEEE-EEeCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCeEEEEEe
Q 040533 186 NLLA-SGGDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 186 ~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~ 260 (364)
+.++ +.+.+| .|++||+..+. ...+..+.......+|+|+++.++.+.. .+| .|.++|+.+++......
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~lt~ 333 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAERLTF 333 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEeec
Confidence 8775 445555 59999987643 3444445555567899999987777653 444 47777877766543333
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC---CcEEEE
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD---ETLRFW 337 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~vw 337 (364)
........+|+|+|++++.... .+....|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~---~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHG---SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CCCCccCEEECCCCCEEEEEEC---CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 3344557899999999987642 112347999999887654 333 22234567999999988776653 357777
Q ss_pred EeeCCCCCcceeccCCceeeeeeccC
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.. .....+..+.+.+...+|||.
T Consensus 409 ~~~g-~~~~~l~~~~g~~~~p~wsp~ 433 (433)
T PRK04922 409 STDG-RVRQRLVSADGEVREPAWSPY 433 (433)
T ss_pred ECCC-CceEEcccCCCCCCCCccCCC
Confidence 7744 344555556677889999984
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-18 Score=148.98 Aligned_cols=246 Identities=13% Similarity=0.192 Sum_probs=181.2
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-----eeeeecccCcEEEEEEcC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-----TSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~~v~~~~~~~ 183 (364)
+.+.||+++........-.-...|.++.|+|.+.++++.|..+|.|.+||++..... ......|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 479999998774444333467899999999999999999999999999999876541 123346889999999977
Q ss_pred CC--CEEEEEeCCCeEEEEeCCCCCCCcceEEec---------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 184 EG--NLLASGGDDNLVHVWDHSKMSSSKCLHRFR---------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 184 ~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
+. .-+++++.||.|..|+++....+....... .....+++++|.+...+.++.|. .+|.|.--+...
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT--e~G~v~~~~r~g 379 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT--EEGKVYKGCRKG 379 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc--CCcEEEEEeccC
Confidence 44 449999999999999987654322111111 12346889999998888888876 999988744332
Q ss_pred CeE--------E-EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-CCceeeeccccccceeEEeecCCC
Q 040533 253 GTC--------I-HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 253 ~~~--------~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
.+. . .-..+.++|.++.++|-+..++...+ |-.++||... ...++..+..+...+++++|||-.
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g------DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr 453 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG------DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR 453 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeec------cceeEeccccCCCCcchhhhhccceeeeeEEcCcC
Confidence 211 1 11234588999999999888776644 9999999988 788888888888889999999976
Q ss_pred C-EEEEEeCCCcEEEEEeeCCCCC--cceeccCCceeeeeecc
Q 040533 323 L-TVVSAAADETLRFWEAFGPSGS--GDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 323 ~-~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~v~~~~~sp 362 (364)
. .++++..||.|.+||+...... .+...+....+.+.|+|
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP 496 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCC
Confidence 4 6788888999999999765442 22222344445555555
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=140.45 Aligned_cols=289 Identities=15% Similarity=0.213 Sum_probs=202.2
Q ss_pred ccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE-EecCCcEEEEecCCcceeeeeecC
Q 040533 51 MDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 51 ~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
..+||+ +.+|...+-.+.|-|.++-+..+++.. -+.|..+.|..|..++++ ...++.|.+|++...+....+...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 456774 578888888999999998887766654 456888999988876655 457889999999999988889888
Q ss_pred CCcEEEEEeecCCC-CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 129 DKRVATASWNHWNG-HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 129 ~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
..++.+++|+| ++ .+|.+...+-.|.+|.+.+..... +.-.+..+..++|+|+|++.+.+++-.....+.+...+.
T Consensus 91 ~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECC-CcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 89999999999 66 677778889999999998776433 333345568899999999988887543222222222222
Q ss_pred CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccC
Q 040533 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287 (364)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 287 (364)
...+..+....-..+.+.|+|+|..+.+ ||.--.-.+..++..-.+..++|+|.++++++|..
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laV------------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy----- 230 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAV------------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY----- 230 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEE------------ecchhhheeeeeeeccceeEEEeccccceEEeecc-----
Confidence 3344555555666788999999854443 33222222223344456788899999999998854
Q ss_pred CCCeEEEeeCCCCce------------------------------------------------------------eee--
Q 040533 288 DGQKLCLWKYPHMTK------------------------------------------------------------WGE-- 305 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~------------------------------------------------------------~~~-- 305 (364)
|+.+++.+--+.++ +..
T Consensus 231 -D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk 309 (447)
T KOG4497|consen 231 -DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK 309 (447)
T ss_pred -chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence 77777654211110 000
Q ss_pred ----ccccccceeEEeecCCCCEEEEEeC--CCcEEEEEeeCCCCCcceeccCCceeeeeeccCC
Q 040533 306 ----LQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPIR 364 (364)
Q Consensus 306 ----~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~~ 364 (364)
+......+..++|++|..+++|-.. -+.+.+||+...+....+. ...+|....|.|.|
T Consensus 310 p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~ 373 (447)
T KOG4497|consen 310 PPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGR 373 (447)
T ss_pred CCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCC
Confidence 1112234667899999999998754 3679999998876655543 47789999999975
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=125.34 Aligned_cols=267 Identities=15% Similarity=0.184 Sum_probs=179.1
Q ss_pred ccCCC--ccEEEEEeCCeEEEEECCCC--------ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 51 MDWGR--NNILAIALGLELYLWKQENG--------EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 51 ~~~~~--~~~~~~~~~~~i~iw~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
-+|+| ..++++..+|.|.+..+++. ....+....+|.++|+.++|. ..+|++|+ ||.|+=|......
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhh
Confidence 34555 44677778899999987532 112345556999999999998 45677775 6999999765432
Q ss_pred e------eee--eecC-----CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE
Q 040533 121 L------IRN--LEGH-----DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 121 ~------~~~--~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (364)
. +.. ...| -..|+++...|..+.+|. ++.|+.++-||+++++ +...+++|++.+.++.--.....
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcc
Confidence 2 101 1112 246889999994555554 4589999999999877 57889999999999988555568
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEe------ccc-ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRF------RDH-RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
+++|++||++++||.++.+..+.+... +.| ...|.+++.+. ..+++|+ ...+.+|+++..++...+.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg---Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG---GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC---CCceeEEeccCCCceEEEe
Confidence 999999999999999886543222221 112 23566777654 4666665 5789999999999999999
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEEEEeCCCcEEEE
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLRFW 337 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw 337 (364)
.+.++..+.|..+ .++++ ++.+.+.-|.+. +..-...+......++..|+..- ++|-.++..+.+.|+
T Consensus 245 ipa~v~~v~F~~d--~vl~~------G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIG------GEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cccceeEeeeecc--eEEEe------ccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 9999999988654 33333 236678777764 23223333322334444444332 345555666666665
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=149.71 Aligned_cols=246 Identities=19% Similarity=0.299 Sum_probs=169.5
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCC-CCEEEEeeCCCcEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWN-GHILTSGSQDKSIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d 158 (364)
.++.||.+-|.|+.|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-|.. .+++++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4566999999999999999999999999999999998888777664 799999999999854 45788899999999999
Q ss_pred cccC---------cceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcc-------eEEecccccce
Q 040533 159 VRVS---------NNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKC-------LHRFRDHRAAV 221 (364)
Q Consensus 159 ~~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~v 221 (364)
+... ......+..|...|..++-.|++ +.+.++++||+++-+|++....-++ +..+....-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9852 22345567789999999999988 7899999999999999987432111 11111222346
Q ss_pred eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 222 KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
.++..+|..+++++.|+ .|-..++||.+... ..+.... ....+|. -+++.++-|.....+
T Consensus 204 k~ltisp~rp~~laVGg--sdpfarLYD~Rr~l--ks~~s~~---~~~~~pp-------------~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGG--SDPFARLYDRRRVL--KSFRSDG---TMNTCPP-------------KDCRCVRYFSPGHLK 263 (758)
T ss_pred eeeeecCCCCceEEecC--CCchhhhhhhhhhc--cCCCCCc---cccCCCC-------------cccchhheecCcccc
Confidence 78999999999999987 89999999964321 1111000 0001110 001222222211110
Q ss_pred eeee-ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc
Q 040533 302 KWGE-LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 302 ~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
...- +..-...++.+.|+|+|.-|+..-..-.|+++|+...+...
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 0000 00111236778999999766555444579999998877644
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-16 Score=135.75 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=184.9
Q ss_pred ccEEEE--EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE
Q 040533 56 NNILAI--ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA 133 (364)
Q Consensus 56 ~~~~~~--~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 133 (364)
.+++.+ ..++.|.+.|..+.+....+.. ....-..+.|+|||+++++++.||.|.++|+.+++.+.+++.. ....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~ 81 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPR 81 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcc
Confidence 444443 3579999999999887665543 2333345789999999999999999999999999999998854 4568
Q ss_pred EEEeecCCCCEEEEee-CCCcEEEEEcccCcceeeeeec-------ccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCC
Q 040533 134 TASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSRINA-------HTAEVCGLKWSNEGNLLASGGD-DNLVHVWDHSK 204 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~ 204 (364)
.+++++ ++++++++. ..+.+.++|.++.+. +..+.. ....+.++..+|....++..-. .+.|.+.|...
T Consensus 82 ~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 82 GIAVSP-DGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEE---TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred eEEEcC-CCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 899999 888887665 688999999987765 333322 2346778888888875555544 58888888776
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC----------------------
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---------------------- 262 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------------------- 262 (364)
... .....+ ..........|+|+++++++... .++.|.++|..+++.+..+...
T Consensus 160 ~~~-~~~~~i-~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 160 PKN-LKVTTI-KVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp SSC-EEEEEE-E--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred ccc-cceeee-cccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence 532 112222 23456678999999988888655 5778999998887655443210
Q ss_pred ---------------------------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 263 ---------------------------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 263 ---------------------------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
+.-.-+..+|+++++.+... .+.+.+.|.++|.++.+.+..+...
T Consensus 236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~--~~~~~~~v~viD~~tl~~~~~i~~~ 313 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTF--LNPDADTVQVIDKKTLKVVKTITPG 313 (369)
T ss_dssp EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-T--T-SSHT-EEEEECCGTEEEE-HHHH
T ss_pred ccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeecc--CCCCCceEEEEECcCcceeEEEecc
Confidence 01123455788888777621 2244789999999999888777533
Q ss_pred c-cceeEEeecCCCCEEEEEeC--CCcEEEEEeeCCCCCccee
Q 040533 310 T-SRILELSQSPDGLTVVSAAA--DETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 310 ~-~~i~~i~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~ 349 (364)
. ..+..+.|+++|+.+..+.. +|.|.+||..+.+.++.+.
T Consensus 314 ~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 314 PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 2 35889999999997765544 3469999999988877765
|
... |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=134.50 Aligned_cols=226 Identities=16% Similarity=0.260 Sum_probs=176.6
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
+.....+|+|.+|++ +...++.+.....|.||.....+ .....+..|...|+.++|+|..+.|++++.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 334567899999999 99999999999999999987655 345678889999999999999999999999999999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE-----EEEecCCCeEEEEEcCCccce
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI-----HSVDTKAQICGLEWNRHHKEI 277 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l 277 (364)
..+...++...+..++...+++.|+|.+ +.+++|+ --..|.+|-++..+-- -.....+.|.++.|+|++-++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgS--gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGS--GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcC-ceEEecc--CccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 6666667777777889999999999988 6777766 5677888777654322 111235779999999999999
Q ss_pred eeeccCCccCCCCeEEEeeC------------------CCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 278 LSGHGFSSSGDGQKLCLWKY------------------PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
++|.. |+..+++.. +-|+.+.++....+.+..+.|+|+|..|+-.+.|+.+.+-|.
T Consensus 162 aaGs~------D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 162 AAGST------DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ccccc------CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 98855 999999864 113344555556678999999999999999999999999998
Q ss_pred eCCC-CCcceeccCCceeeeee
Q 040533 340 FGPS-GSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 340 ~~~~-~~~~~~~~~~~v~~~~~ 360 (364)
..+. .+..+....-|..++.|
T Consensus 236 ~~p~~~v~~~~~~~lP~ls~~~ 257 (361)
T KOG1523|consen 236 AGPSERVQSVATAQLPLLSVSW 257 (361)
T ss_pred CCCchhccchhhccCCceeeEe
Confidence 8775 23333322244444443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-17 Score=144.32 Aligned_cols=238 Identities=13% Similarity=0.103 Sum_probs=162.9
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|.+.... +.+..+...+...+|+| +++.|+..+. +..+.+|++.+++. ..+......+..+.|+|||+
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 689999875543 44455677899999999 8888876542 34789999986652 22223334455789999999
Q ss_pred EEEEE-eCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCeEEEEEec
Q 040533 187 LLASG-GDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 187 ~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~ 261 (364)
.|+.. +.+| .|++||+.... ...+..+...+....|+|+++.++.+.. .++ .|.++|+.+++.......
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~----~~~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCC----EEEccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEeecC
Confidence 88765 3344 58899987643 3344444556788999999987777653 344 455567777655433333
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCc---EEEEE
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET---LRFWE 338 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~---i~vw~ 338 (364)
........|+|+|++++..... .....|.+||+.+++.. .+... .......|+|||++|+.++.++. +.+++
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~---~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSN---GGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CCCccCEEECCCCCEEEEEEcc---CCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 3456678999999998775421 12356899999887643 33221 22346789999999999988765 56666
Q ss_pred eeCCCCCcceeccCCceeeeeeccC
Q 040533 339 AFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+. +.....+.+|.+.+...+|||.
T Consensus 405 ~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 TD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CC-CCCeEECccCCCCcCCcccCCC
Confidence 63 4555667778888999999995
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-19 Score=133.45 Aligned_cols=267 Identities=18% Similarity=0.227 Sum_probs=180.8
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
.+.+.+|.+.|+++.|-.+++ |.+|...|.|++|++++......++ .+...|+.+.-.| + +.+.+-+.|+.+.+|+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEE
Confidence 345558999999999987764 8899999999999999998888887 5778899998887 5 6788899999999999
Q ss_pred cccCcceeeeeecccCcEEEEEEcCC-----CC----EEEEEeCCCe-EEEEeCCCCCCCcceEEe----cccccceeEE
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNE-----GN----LLASGGDDNL-VHVWDHSKMSSSKCLHRF----RDHRAAVKAL 224 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~----~l~~~~~d~~-i~iwd~~~~~~~~~~~~~----~~~~~~v~~~ 224 (364)
+..... ...|.-.++++.|.+. ++ .++.-++... +.+-|.... ..+... .+..+.+++.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~---tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT---TQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc---ceeEccCchhccccCceeee
Confidence 975432 2234444555555432 11 1221111110 111121110 001111 1234556666
Q ss_pred EEc-cCCCcEEEeecCCCCCeEEEEECCCCeEEEEE-----------ecCCCeEEEEEcCCccceeeeccCCccCCCCeE
Q 040533 225 AWC-PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV-----------DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 225 ~~~-~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i 292 (364)
.+. ..+.++++.+ |.++|.+.+||+.++..+-.+ .+..++.++.+.+.-..=+.| +.+..+
T Consensus 157 ~~~~~c~s~~llla-GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg------ga~dkl 229 (323)
T KOG0322|consen 157 DKDHACGSTFLLLA-GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG------GADDKL 229 (323)
T ss_pred eccccccceEEEEE-eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC------Cccccc
Confidence 643 2344555544 569999999999997544333 234678888887654433333 337778
Q ss_pred EEeeCCCC--ce--eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 293 CLWKYPHM--TK--WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 293 ~i~d~~~~--~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..|+++.. .. ..++.-..-.|..+..-||++.+||++.|+.||||..++...+..++-|.+.|++++|||.
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence 88887543 21 1122222345788999999999999999999999999999999999999999999999995
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-17 Score=143.68 Aligned_cols=240 Identities=12% Similarity=0.053 Sum_probs=162.5
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec---CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM---ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.++|........+. .+...+.+.+|||||+.|+..+. +..|.+|++.+++... +....+.+..++|+| ++
T Consensus 180 ~l~~~d~dg~~~~~lt---~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG 254 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH---RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DG 254 (429)
T ss_pred eEEEEcCCCCCCEEee---cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CC
Confidence 7999998876554332 45678999999999999987642 3479999998875433 222334455789999 88
Q ss_pred CEEEEe-eCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILTSG-SQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-N--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~~~-~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+.. +.+| .|.+||+.++. ...+..+...+....|+|+|+.|+..+.+ + .|+++|+.... ...+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~ 328 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITW 328 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeec
Confidence 877654 4455 48889988665 23343444567889999999988777654 4 44555655432 233333
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
.........|+|+|+.++.++.......|.+||+.+++.. .+..........|+|+|+.++..... +....+.+++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~---~~~~~l~~~~ 404 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQ---GMGSVLNLVS 404 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcC---CCceEEEEEE
Confidence 3445567899999988777654112346889999887643 33333334578899999999877531 1123477788
Q ss_pred CCCCceeeeccccccceeEEeecCC
Q 040533 297 YPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
+ +++....+..|.+.+...+|+|-
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCCC
Confidence 7 55666677778888899999873
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=146.72 Aligned_cols=273 Identities=17% Similarity=0.236 Sum_probs=209.7
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee-ecCCCcEEEEEeecCCC-CEEEEeeCCCcEEEEEc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL-EGHDKRVATASWNHWNG-HILTSGSQDKSIINHDV 159 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~ 159 (364)
.+..|.+.|..+.|+..|..|++|+.|..|.+||...++....+ .+|...|....|.|..+ ..+++++.||.+++-.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 45689999999999999999999999999999999888776655 46888898888988543 57889999999998776
Q ss_pred ccCcce--eeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc---ceeEEEEccCCCcE
Q 040533 160 RVSNNV--TSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA---AVKALAWCPYQFNV 233 (364)
Q Consensus 160 ~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~ 233 (364)
...+.+ ...+..|.++|..++.-|+. .-|.+++.|+.+.-+|++..........-..+.. ....++.+|...+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 544432 34566799999999999954 5799999999999999987654333333333333 56789999999999
Q ss_pred EEeecCCCCCeEEEEECCCCeE------EEEE-------ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-
Q 040533 234 LASGGGTQDGCIKIWNVQKGTC------IHSV-------DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH- 299 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~~~~------~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~- 299 (364)
+++++ .|..+++||.+.-.. +..+ .....|++++++.++..+++... |-.|+++.-..
T Consensus 297 faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn------De~IYLF~~~~~ 368 (559)
T KOG1334|consen 297 FAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN------DEDIYLFNKSMG 368 (559)
T ss_pred cccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec------ccceEEeccccc
Confidence 99987 999999999875321 1222 12345999999988877777754 88899995422
Q ss_pred -C----------ceeee-cccccc--ceeEEe-ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 300 -M----------TKWGE-LQHQTS--RILELS-QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 300 -~----------~~~~~-~~~~~~--~i~~i~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+ ..+.. +++|.. .|..+- |-|...|+++||.-|.|.||+-.+++.+..+.+-...|+||.=+|
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 2 12222 667764 355664 467889999999999999999999998888777666888887665
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-18 Score=133.80 Aligned_cols=239 Identities=15% Similarity=0.226 Sum_probs=167.4
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV- 165 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~- 165 (364)
-.+..++|++.-..+|++..|-.|++|+-.. +....++ .....|++++|-|.....|+.|+..| |.+|........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4567899999777788999999999999766 4444444 34568999999997778888888765 788976532211
Q ss_pred ------------eeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 166 ------------TSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 166 ------------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
+....+| .+|++|.|.+||..+++++ .|..|.|||..++.. .++. ....+.+.-+.|+|++..
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~--~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLI--PKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-cccc--ccCCCceeeEEEcCCCCE
Confidence 1122234 6899999999999999988 467899999887654 2232 234567889999999988
Q ss_pred EEEeecCCCCCeEEEEEC-CCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc----------
Q 040533 233 VLASGGGTQDGCIKIWNV-QKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT---------- 301 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~---------- 301 (364)
++++. -|+..++|+. ++....+-.-..+.|...+|+|.|++|+... .+.-++|.+...+
T Consensus 253 lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-------sgsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 253 LFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-------SGSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred EEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-------cCCceEEEEeecCCCccccCccc
Confidence 88865 5999999954 4444555555567899999999999987654 3333444432100
Q ss_pred -----eeeecc-----c----cccceeEEeecCCCCEEEEEeCCC--------cEEEEEeeCC
Q 040533 302 -----KWGELQ-----H----QTSRILELSQSPDGLTVVSAAADE--------TLRFWEAFGP 342 (364)
Q Consensus 302 -----~~~~~~-----~----~~~~i~~i~~~~~~~~l~~~~~dg--------~i~vw~~~~~ 342 (364)
.+..++ . -.+++.+++|+|.|.+||+.-..+ .|.+||....
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 011111 1 146789999999999999875433 3666776543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=146.80 Aligned_cols=199 Identities=18% Similarity=0.314 Sum_probs=152.9
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEe
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASW 137 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 137 (364)
++..+.||.+.+.+-. +++... ...|.+.+.+-.|+|||.-|+++++||.|++|. ++|-+..++-....+|.|++|
T Consensus 78 ~~i~s~DGkf~il~k~-~rVE~s--v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-ARVERS--ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred EEEEcCCceEEEeccc-chhhhh--hhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 6777889999998743 444333 348999999999999999999999999999998 455544555557789999999
Q ss_pred ecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc
Q 040533 138 NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 138 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
.|+..+.+++.+. .+.+=-+..... ....++|.+-|.++.|++..+++++|++|-..++||-. +..+..-..|
T Consensus 154 ~p~S~~vl~c~g~--h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----G~~Lf~S~~~ 226 (737)
T KOG1524|consen 154 APNSNSIVFCQGG--HISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----GANLFTSAAE 226 (737)
T ss_pred CCCCCceEEecCC--eEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc----CcccccCChh
Confidence 9966666665543 455545543333 55678999999999999999999999999999999943 3557777789
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeecc
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
..+|++++|+|+ .+++.++ -+++++=. ...+.|..++||+||..+++|.+
T Consensus 227 ey~ITSva~npd--~~~~v~S---~nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 227 EYAITSVAFNPE--KDYLLWS---YNTARFSS----------PRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred ccceeeeeeccc--cceeeee---eeeeeecC----------CCccceEEEEEcCCCceeecccc
Confidence 999999999998 3555443 34455211 12367899999999999998864
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-17 Score=130.51 Aligned_cols=283 Identities=16% Similarity=0.211 Sum_probs=185.9
Q ss_pred cceeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCc--
Q 040533 45 DYYSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETS-- 119 (364)
Q Consensus 45 ~~~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~-- 119 (364)
+..+..++|++. .++.++.|..|++|+-+......+.. .....|+|++|-|.+ ..|++|+.. -|.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks--~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS--VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc--hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 345677899884 35667788999999987744332222 346679999999954 578888865 4999986532
Q ss_pred --ce----------eeeeecCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 120 --KL----------IRNLEGHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 120 --~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.. +....+| .+|++++|++ ++..+++++. |..|.+||..++...... ..-.+.+.-+.||||+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCC
Confidence 11 1122334 6899999999 8888888874 568999999988753322 23446788999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC----C--------e
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK----G--------T 254 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~----~--------~ 254 (364)
+|+.+.-|+..++|+....-. ..+-. ...+.|...+|+|.|+.++.+.+ |.-++|.+.- . +
T Consensus 252 ~lfaAt~davfrlw~e~q~wt--~erw~-lgsgrvqtacWspcGsfLLf~~s----gsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWT--KERWI-LGSGRVQTACWSPCGSFLLFACS----GSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EEEEecccceeeeehhcccce--eccee-ccCCceeeeeecCCCCEEEEEEc----CCceEEEEeecCCCccccCcccce
Confidence 999999999999996543221 12222 23458999999999999988865 4444554421 0 0
Q ss_pred E---EEEE------e----cCCCeEEEEEcCCccceeeeccCCc--cCCCCeEEEeeCCCCceeeecc-c--cccceeEE
Q 040533 255 C---IHSV------D----TKAQICGLEWNRHHKEILSGHGFSS--SGDGQKLCLWKYPHMTKWGELQ-H--QTSRILEL 316 (364)
Q Consensus 255 ~---~~~~------~----~~~~v~~~~~~~~~~~l~~~~~~~~--~~~~~~i~i~d~~~~~~~~~~~-~--~~~~i~~i 316 (364)
. +..+ . ..+++.+++|+|.|.++++...-.. ..-...|.+||.+..-.+.-.. + .......|
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 0 1111 1 1356889999999999998753100 0012346677765433332210 1 11224556
Q ss_pred eecC---CCCEEEEEeCCCcEEEEEee
Q 040533 317 SQSP---DGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 317 ~~~~---~~~~l~~~~~dg~i~vw~~~ 340 (364)
.|+| +|.+|..+=..|.+.-|++.
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeeeE
Confidence 6766 66777777777888877764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-16 Score=140.20 Aligned_cols=286 Identities=16% Similarity=0.194 Sum_probs=205.5
Q ss_pred ccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC---CEEEEEecCCcEEEEecCCcceeeeee
Q 040533 51 MDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA---KTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 51 ~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
-.++++ ..+.+..+..|.||...++++.. .+.+|..+++.+.+.|.. .++.+++.+|.|++||...+.+++++.
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECIT--SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhh--hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 345554 47778889999999999999866 566999999999998854 467789999999999999888877765
Q ss_pred cCCCcEEEEEeecC----------------------------------------------------------CCCEEEEe
Q 040533 127 GHDKRVATASWNHW----------------------------------------------------------NGHILTSG 148 (364)
Q Consensus 127 ~~~~~v~~~~~~~~----------------------------------------------------------~~~~l~~~ 148 (364)
.+ .++..+.+.|. .+.+...
T Consensus 100 ~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i- 177 (792)
T KOG1963|consen 100 NN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI- 177 (792)
T ss_pred cC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE-
Confidence 32 12222222110 1111111
Q ss_pred eCCCcEEEEEcccCccee---eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCCCcceEEecccccceeEE
Q 040533 149 SQDKSIINHDVRVSNNVT---SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK-MSSSKCLHRFRDHRAAVKAL 224 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~ 224 (364)
..+..+.+|+........ ..-..|.-.+++.++||+++++|++..||.|.+|.--. .........+.-|...|.++
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 112234455554422100 11123556689999999999999999999999996433 22233456667788999999
Q ss_pred EEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee
Q 040533 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304 (364)
Q Consensus 225 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~ 304 (364)
+|+++|. .+.+|| .++.+.+|.+.+++...--...++|..+.++|++.+.+.... |+.|.+....+.....
T Consensus 258 ~fS~~G~-~LlSGG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~------DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 258 SFSSDGA-YLLSGG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLE------DNQIHLIKASDLEIKS 328 (792)
T ss_pred EEecCCc-eEeecc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEec------CceEEEEeccchhhhh
Confidence 9999995 555665 899999999999984444456789999999999998887754 9999999887665544
Q ss_pred eccc-----------cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 305 ELQH-----------QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 305 ~~~~-----------~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.+.+ ..+-.+.++++|.-+.++-.+..|.|.+||+.+.+.+..+.
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 4332 13346788999977788888999999999999887765543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-16 Score=123.05 Aligned_cols=272 Identities=15% Similarity=0.200 Sum_probs=192.7
Q ss_pred cccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--CcEEEEecCCcceeeeee
Q 040533 50 MMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--SKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 50 ~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~ 126 (364)
.+.|+.+ .+++.+.....++|+.+.... ..........|..+-|+. .++|..+.+ ..+++++++.+..+..+.
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~ 85 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF 85 (391)
T ss_pred eeeeccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe
Confidence 3446665 478888877888888765443 222222344566666764 456655543 359999999888887776
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee--eeecccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS--RINAHTAEVCGLKWSNEGNLLASGG--DDNLVHVWDH 202 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~ 202 (364)
...+|.++.+ +.+.|+++-++. |+|||+++-+.+.. ....+...+.++++++.+.+++.-+ ..|.|.+||+
T Consensus 86 -fpt~IL~Vrm---Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 86 -FPTSILAVRM---NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred -cCCceEEEEE---ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 5678999999 667777776654 99999987664222 2223556677777777777888754 4689999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe-EEEEECCCCeEEEEEecC---CCeEEEEEcCCcccee
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC-IKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEIL 278 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~ 278 (364)
.+. +++..+..|.+.+-+++|+++| .++++++ ..|+ ||++.+.+|+.+..+.-+ ..|.+++|+|++++|+
T Consensus 161 ~nl---~~v~~I~aH~~~lAalafs~~G-~llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 161 INL---QPVNTINAHKGPLAALAFSPDG-TLLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred ccc---eeeeEEEecCCceeEEEECCCC-CEEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 765 4588888999999999999999 7888886 6666 799999999999998754 5689999999999998
Q ss_pred eeccCCccCCCCeEEEeeCCCCce---------------------------eeec----------cccccce-eEEeec-
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTK---------------------------WGEL----------QHQTSRI-LELSQS- 319 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~---------------------------~~~~----------~~~~~~i-~~i~~~- 319 (364)
+.+ +.++|.+|.+..... +... +...+.. ..+.+.
T Consensus 235 ~sS------~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~ 308 (391)
T KOG2110|consen 235 ASS------NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSS 308 (391)
T ss_pred Eec------CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeec
Confidence 874 489999998753210 0000 0001111 122333
Q ss_pred -CCCCEEEEEeCCCcEEEEEeeCC
Q 040533 320 -PDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 320 -~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+...++..++.||.++.|.+...
T Consensus 309 ~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 309 IQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred cCCCCEEEEEEcCCeEEEEEcCCC
Confidence 46678999999999999998763
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-16 Score=140.49 Aligned_cols=239 Identities=13% Similarity=0.096 Sum_probs=164.3
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|.+ +...+.+..+...+.+.+|+| +++.|+..+. +..|.+||+.++.. ..+..+.+.+...+|+|||+
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 78889875 444566667888999999999 8888877653 45899999987653 34445666778899999998
Q ss_pred EEE-EEeCCCe--EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 187 LLA-SGGDDNL--VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 187 ~l~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
.|+ +.+.++. |++||+.... ...+..+........|+|+++.++.+.....+..|+++|+..++.........
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~ 334 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG 334 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence 775 4455554 7777876543 34455556667789999999877766531123478888987766554444445
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC------CcEEEE
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD------ETLRFW 337 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~vw 337 (364)
.+....|+|+|+.++.... ...+..|.+||+..+.. ..+.. ...+..+.|+|||+.|+..+.+ ..+.++
T Consensus 335 ~~~~~~~SpdG~~ia~~~~---~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQ---GGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred cccCeEECCCCCEEEEEEc---CCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 5777899999999987542 11235788999865443 33322 2346788999999988775543 257777
Q ss_pred EeeCCCCCcceeccCCceeeeeeccC
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++..+.. ..+. ..+.+...+|||.
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCCC
Confidence 7765544 3443 2445788899985
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-17 Score=142.35 Aligned_cols=241 Identities=15% Similarity=0.153 Sum_probs=158.1
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
..|.++|.. +...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.++.. ..+....+.+...+|+|||
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 357777764 454555566778899999999 88888776643 3599999987753 2233344556789999999
Q ss_pred CEEE-EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEE--ECCCCeEEEEEecC
Q 040533 186 NLLA-SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW--NVQKGTCIHSVDTK 262 (364)
Q Consensus 186 ~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~--d~~~~~~~~~~~~~ 262 (364)
+.|+ +.+.++...+|.++... .....+..+........|+|+|+.++.+.. .++...+| ++.+++........
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~lt~~g 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRVTFTG 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCC--CCcEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEEecCC
Confidence 8876 45677776666543211 124445545555677899999988777643 44555555 44555433322223
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC-c--EEEEEe
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE-T--LRFWEA 339 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~--i~vw~~ 339 (364)
.......|+|+|++++..... +....|.+||+.+++... +... .......|+|||+.|+.++.++ . +.+.++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~---~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRV---GGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCcCceEECCCCCEEEEEEcc---CCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 334568999999998865421 112479999998876543 3222 2346789999999988877554 3 444455
Q ss_pred eCCCCCcceeccCCceeeeeeccC
Q 040533 340 FGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+.....+..+.+.+...+|||.
T Consensus 403 -~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 -DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -CCCceEEeecCCCCCCCCccCCC
Confidence 34445555566778899999995
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-19 Score=144.77 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=206.9
Q ss_pred ecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 49 NMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 49 ~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
..++++.+ .++.++..|.|..+|..++++...+.+ ...|.++.|-.+.+++|++- ...++||| ..|..+..++
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh
Confidence 33455443 488889999999999999987544433 56799999999999999984 67899999 4577788887
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
.| ..|..+.|.| ..-+|++++..|.+..-|+.+++. +..+..-.+.+..|+-+|-+..+-+|...|+|.+|.. .
T Consensus 208 ~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP---~ 281 (545)
T KOG1272|consen 208 RH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP---N 281 (545)
T ss_pred hc-Cchhhhcccc-hhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCccceEEEcCCCceEEecCC---C
Confidence 55 5799999999 899999999999999999998875 5556666788899999998889999999999999994 4
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
...++..+..|.++|.++++.++|.+++.+| .|..++|||+++...+.++....+...+++|..|.+.++-
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~------ 352 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSY------ 352 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCccccccccccceeeec------
Confidence 4566888888999999999999996555544 7999999999998888888777788889998877654433
Q ss_pred CCCCeEEEeeC-CCC--ceeeecccc--ccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 287 GDGQKLCLWKY-PHM--TKWGELQHQ--TSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 287 ~~~~~i~i~d~-~~~--~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
...+.||.- -.+ ..-..+-.| .++|..+.|.|-...|-.|-..|.-.+
T Consensus 353 --G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 353 --GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred --CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 678899953 221 111112222 358999999997766666655554333
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-17 Score=141.42 Aligned_cols=239 Identities=16% Similarity=0.116 Sum_probs=161.4
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.+||........+ ..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+...+.+|+| ++
T Consensus 185 ~l~i~D~~g~~~~~l---t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-DG 259 (433)
T PRK04922 185 ALQVADSDGYNPQTI---LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-DG 259 (433)
T ss_pred EEEEECCCCCCceEe---ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-CC
Confidence 689999876554333 3567789999999999999987643 469999998876543 333445556789999 78
Q ss_pred CEEE-EeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNL--VHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.+| .|++||+.++. ...+..+.......+|+|||+.|+.++. +|. |+++|+.... ...+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~lt~ 333 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERLTF 333 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEeec
Confidence 7664 555555 58999988665 3344455555567899999998887764 444 6666765432 222222
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
+.......+|+|+|+.++++........|.+||+.+++.. .+..........|+|+|+.++..... ...+.|.+++
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~---~g~~~L~~~~ 409 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATRE---GGRGVLAAVS 409 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEec---CCceEEEEEE
Confidence 3344557899999988777653111236999999887655 44333345677999999988765431 2245688888
Q ss_pred CCCCceeeeccccccceeEEeecC
Q 040533 297 YPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
.. +.....+..+.+.+...+|+|
T Consensus 410 ~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCceEEcccCCCCCCCCccCC
Confidence 85 445556655666777888876
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=137.84 Aligned_cols=197 Identities=18% Similarity=0.206 Sum_probs=152.1
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
.+++|++ ++..+++|+.||++++|+..+... ......|...|.++.|+|||+.|++-+.| ..+||+.+++.. +.
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~---~a 221 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA---LA 221 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch---hh
Confidence 6789999 999999999999999999776654 44456788999999999999999999999 899999887633 33
Q ss_pred Eec--ccccceeEEEEccCC---CcEEEeecCCCCCeEEEEECCCCeE------EEEEecCCCeEEEEEcCCccceeeec
Q 040533 213 RFR--DHRAAVKALAWCPYQ---FNVLASGGGTQDGCIKIWNVQKGTC------IHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 213 ~~~--~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
... ..+.....+.|+.++ ..++++. ...-+.|+.||+...+. .+.+.....|++++.+++|++++.|+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~-~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAAS-QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEe-cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 222 223345566776654 2233332 22556777777654322 12223346799999999999999996
Q ss_pred cCCccCCCCeEEEeeCCCCceeeec-cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGEL-QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
. +|.|.|++..+.+.+.-. +.|...|+.+.|+||.+++++.+.|....+..+.-.
T Consensus 301 ~------dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 301 M------DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred c------CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 5 999999999998887765 469999999999999999999999999999988763
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-14 Score=124.24 Aligned_cols=287 Identities=12% Similarity=0.168 Sum_probs=188.2
Q ss_pred CeEEEEEC--CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----CCcEEEEecCCc--c--eeeeeecCCCcEEE
Q 040533 65 LELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----ASKLQLWDAETS--K--LIRNLEGHDKRVAT 134 (364)
Q Consensus 65 ~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~~~~~~~~v~~ 134 (364)
+.|++|++ +++++...... ........++++|++++|.+..+ +|.|..|++... + .+............
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 68888887 56665544443 23556788999999999998876 468999988764 2 33334334455667
Q ss_pred EEeecCCCCEEEEee-CCCcEEEEEcccCcceeee--ee-----------cccCcEEEEEEcCCCCEEEEEe-CCCeEEE
Q 040533 135 ASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSR--IN-----------AHTAEVCGLKWSNEGNLLASGG-DDNLVHV 199 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~--~~-----------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i 199 (364)
++++| ++++|+++. .+|.|.++++.....+... .. .......++.|+|+++++++.. ....|.+
T Consensus 92 i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 92 IAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 99999 788777775 5899999999875432222 11 1124568899999999888765 3357999
Q ss_pred EeCCCCCC-CcceEEec-ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC--CCeE--EEEEec-------CCCeE
Q 040533 200 WDHSKMSS-SKCLHRFR-DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ--KGTC--IHSVDT-------KAQIC 266 (364)
Q Consensus 200 wd~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~--~~~~~~-------~~~v~ 266 (364)
|++..... ......+. ......+.+.|+|+++.++++.. .++.|.++++. ++.. +..+.. .....
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 99876431 11112221 23455789999999988888865 88999999998 4432 233321 12578
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCC--Cc--eeeeccccccceeEEeecCCCCEEEEEe-CCCcEEEEEeeC
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH--MT--KWGELQHQTSRILELSQSPDGLTVVSAA-ADETLRFWEAFG 341 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~--~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~ 341 (364)
.+.++|+|++|+++.. ..+.|.+|++.. ++ .+..+.......+.++++|+|++|+++. .++.|.+|++..
T Consensus 249 ~i~ispdg~~lyvsnr-----~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNR-----GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEE-TTSSEEEEEEC-----TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred eEEEecCCCEEEEEec-----cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 8999999999998763 378999999932 22 2333333344578999999999998886 567899999864
Q ss_pred CCCCccee---ccCCceeeeee
Q 040533 342 PSGSGDFV---SHLDGLLSLKV 360 (364)
Q Consensus 342 ~~~~~~~~---~~~~~v~~~~~ 360 (364)
..-.-... ..-....||.|
T Consensus 324 ~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 324 DTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCcEEEecccccCCCCEEEeC
Confidence 33221111 22445666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-16 Score=120.19 Aligned_cols=239 Identities=15% Similarity=0.196 Sum_probs=164.3
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC--CcEEEEEeecCCCCEEEE-eeCC------CcEEEEEc
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD--KRVATASWNHWNGHILTS-GSQD------KSIINHDV 159 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~-~~~d------g~i~~~d~ 159 (364)
...+++|+.|..-+++|.++| .+||+.+--+.....+.+. -.+..+-| ..++|+. |+.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEec
Confidence 345699999999999998666 8999987644332222222 23333444 3344443 3332 36999994
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC-CcEEEeec
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ-FNVLASGG 238 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 238 (364)
. .+..+..+ ....+|.++.+.++ .+++.- ++.|++|..... .+.++.+.....+---++.+|.. ..+++.-
T Consensus 83 ~-k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n--~k~l~~~et~~NPkGlC~~~~~~~k~~LafP- 154 (346)
T KOG2111|consen 83 L-KERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN--PKLLHVIETRSNPKGLCSLCPTSNKSLLAFP- 154 (346)
T ss_pred c-cCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC--hhheeeeecccCCCceEeecCCCCceEEEcC-
Confidence 3 33333333 46788999999876 566554 678999998632 23344443322221123344433 3455554
Q ss_pred CCCCCeEEEEECCCCeE---EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc--ccce
Q 040533 239 GTQDGCIKIWNVQKGTC---IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ--TSRI 313 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i 313 (364)
|..-|.|+|-|+...+. .....|.+.|.+++.+.+|..+|+++. .+-.|+|||..+++++.+++.. ...|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-----kGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-----KGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-----CcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 45789999999987655 444457789999999999999999853 2445899999999999998743 3579
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
.+++|||+..+||++|..|+|.||.++....
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 9999999999999999999999999987543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=146.03 Aligned_cols=211 Identities=17% Similarity=0.255 Sum_probs=156.3
Q ss_pred CCCCcceeecccCCC---ccEEEEEeCCeEEEEECCCCce-----eeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcE
Q 040533 41 NLRNDYYSNMMDWGR---NNILAIALGLELYLWKQENGEV-----QKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKL 111 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~---~~~~~~~~~~~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 111 (364)
.+.+...+..+.|+| .++..++.||.|++|.+..+.. .....+..|.+.|+++.|+| -.+.|+++++|-+|
T Consensus 623 ~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti 702 (1012)
T KOG1445|consen 623 GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTI 702 (1012)
T ss_pred ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcccee
Confidence 455666789999998 2466677889999999876533 22334568999999999999 45789999999999
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEE
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLAS 190 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~ 190 (364)
++||+.+++....+.+|.+.|..++|+| +|+.+++.+.||+|++|+.++++..+..-.+.. ..-..+.|.-+|+++++
T Consensus 703 ~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 703 ELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred eeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence 9999999999999999999999999999 999999999999999999988776554332221 23345778889998888
Q ss_pred EeCC----CeEEEEeCCCCCCCcceEEeccc-ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 191 GGDD----NLVHVWDHSKMSSSKCLHRFRDH-RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 191 ~~~d----~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.+.| ..|.+||..+... .++.+..-. ...+.--.+.+|...++++|- -|..|.+|.+-...+
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK--GD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK--GDRFVNMYEVIYESP 848 (1012)
T ss_pred ecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCCCceEEEecC--CCceEEEEEecCCCc
Confidence 8765 4688888665432 222221110 111112235667777888875 699999999865443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-17 Score=144.71 Aligned_cols=265 Identities=16% Similarity=0.252 Sum_probs=184.5
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC---CCcEEEEEee-cCCCCEEEEeeCCCcEEEEEcccC
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH---DKRVATASWN-HWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~~-~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
......+.|+|-...++++...-.|+|||.+.++.+..+..+ ...|+.+.+- .++..++++|+.||.|+||+-...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 345677889998899999987789999999999988777643 3568888874 446679999999999999975432
Q ss_pred c----ceeeeeec-------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccCC
Q 040533 163 N----NVTSRINA-------HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQ 230 (364)
Q Consensus 163 ~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 230 (364)
. .++....+ ..+.-.-+.|.....+|++++.-..|+|||..... .+..+. +....|+++.-+-.+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ---VVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce---eEeecccCCCccceeecccccC
Confidence 1 11221111 11112446777766677777778899999987642 233322 344567777766555
Q ss_pred CcEEEeecCCCCCeEEEEECCCCeE---EEEEe-cCC--CeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCCCcee
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGTC---IHSVD-TKA--QICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPHMTKW 303 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~-~~~--~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~~~~~ 303 (364)
..++++|. .||.|++||.+.... +.... +.. +|..+.+.+.|-- +++|. .+|.|++||++.....
T Consensus 1221 gn~i~AGf--aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs------~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1221 GNIIAAGF--ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS------QDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred CceEEEee--cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec------cCCeEEEEecccCccc
Confidence 57888876 899999999986443 33333 223 3888888886654 77664 4999999999875332
Q ss_pred eec--cccc--c-ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-------ccCCceeeeeeccCC
Q 040533 304 GEL--QHQT--S-RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-------SHLDGLLSLKVSPIR 364 (364)
Q Consensus 304 ~~~--~~~~--~-~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~sp~~ 364 (364)
..+ ..|. + ..+++..+++...+|+|+. +.|+||++..... ..+. ...+.+.+++|+|-|
T Consensus 1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchh
Confidence 222 2232 3 4899999999999999998 9999999876443 2222 224568999999954
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-16 Score=137.39 Aligned_cols=245 Identities=13% Similarity=0.078 Sum_probs=158.9
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
..|.++|........+ ..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+| +
T Consensus 176 ~~L~~~D~dG~~~~~l---~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-D 250 (427)
T PRK02889 176 YQLQISDADGQNAQSA---LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-D 250 (427)
T ss_pred cEEEEECCCCCCceEe---ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-C
Confidence 3688888755443322 2567789999999999999887643 359999999887543 333445667899999 8
Q ss_pred CCEEE-EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcceEEeccccc
Q 040533 142 GHILT-SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 142 ~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
++.|+ +.+.+|...+|.++........+..+........|+|||+.|+..+. ++...+|.+..... . ...+.....
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~-~~~lt~~g~ 328 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-A-AQRVTFTGS 328 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-c-eEEEecCCC
Confidence 87665 56778877776654332223444445555667899999998876654 45666665432211 1 222222223
Q ss_pred ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.....+|+|+|+.++.+.....+..|.+||+.+++... +..........|+|+|+.++..... .....+.+.+. +
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~---~g~~~l~~~~~-~ 403 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQ---GGRSVLAAVSS-D 403 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEec---CCCEEEEEEEC-C
Confidence 34567899999877766531112379999998876543 3333345678999999998876531 11234666676 4
Q ss_pred CceeeeccccccceeEEeecCC
Q 040533 300 MTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 300 ~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 5556666666677788888874
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.1e-19 Score=143.59 Aligned_cols=213 Identities=17% Similarity=0.258 Sum_probs=175.7
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 209 (364)
..-..+.++. +|..++.|+..|.|..+|..+... ...+ .-...|.++.|-.+.+++|++ ....++|||-. +.
T Consensus 130 FGPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L-~~Ei-~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~----Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKL-HFEI-NVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN----GT 201 (545)
T ss_pred cCCeeeeecC-CccEEEecCCccceeeeeccccee-eeee-ehhhhhhhhhhhcchHHHHhh-hhceEEEecCC----Cc
Confidence 3456788888 999999999999999999997763 3333 234568889998888888776 56789999943 34
Q ss_pred ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCC
Q 040533 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
.++.++.+ ..|..+.|-|.. ++|++++ ..|.++.-|+.+|+.+..+... +.+..+.-+|-+..+-.|+.
T Consensus 202 ElHClk~~-~~v~rLeFLPyH-fLL~~~~--~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs------ 271 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH-FLLVAAS--EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS------ 271 (545)
T ss_pred EEeehhhc-Cchhhhcccchh-heeeecc--cCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC------
Confidence 46666654 568899999987 7888876 8999999999999999888654 67888999999988888876
Q ss_pred CCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 289 ~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
.|+|.+|.....+++..+..|.++|.+|++.++|+|+||++.|..++|||++....+.++.. .-+...++||
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~S 343 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLS 343 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999887766654 3344555554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-17 Score=134.92 Aligned_cols=260 Identities=16% Similarity=0.265 Sum_probs=178.0
Q ss_pred EEEEEeCCeEEEEECCCCce--eeeeeecCCCCCceEEEEc-----CCCCEEEEEecCCcEEEEecCCcceeeeee----
Q 040533 58 ILAIALGLELYLWKQENGEV--QKLLKVTGEDDFPTSISWS-----QDAKTLAVGYMASKLQLWDAETSKLIRNLE---- 126 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---- 126 (364)
.++......+++|+...+.. ..+....-.....+|-+|+ |.+--|.+|-..|.|.+.|....+..+.+.
T Consensus 137 ~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~ 216 (636)
T KOG2394|consen 137 RLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERL 216 (636)
T ss_pred EEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhccc
Confidence 56666667899998874321 1111111112334455553 456678888888999999976533322221
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
..+..|+++.|-|.+...++.+-.+|.+.+||..... +...+ +....+++..+......+. .
T Consensus 217 i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~t~p--~~~~~k~~~~f~i~t~ksk---------~ 278 (636)
T KOG2394|consen 217 INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GATAP--SYQALKDGDQFAILTSKSK---------K 278 (636)
T ss_pred ccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cCCCC--cccccCCCCeeEEeeeecc---------c
Confidence 1347899999999778889999999999999962111 11111 1112235555544332211 0
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
...++..+.--.+.|..++|+|||+++ ++.+ +||.++|||..+.+++..++. -+...+++|||||+|+++|
T Consensus 279 ~rNPv~~w~~~~g~in~f~FS~DG~~L-A~VS--qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG----- 350 (636)
T KOG2394|consen 279 TRNPVARWHIGEGSINEFAFSPDGKYL-ATVS--QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG----- 350 (636)
T ss_pred cCCccceeEeccccccceeEcCCCceE-EEEe--cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec-----
Confidence 113355554456689999999999655 5544 899999999998877665543 2678999999999999998
Q ss_pred cCCCCeEEEeeCCCCceeeeccccccceeEEeecCC-----------------------------------C--------
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD-----------------------------------G-------- 322 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-----------------------------------~-------- 322 (364)
++|.-|.||.+...+.+..-++|.+.|..++|.|- +
T Consensus 351 -GEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~ 429 (636)
T KOG2394|consen 351 -GEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNR 429 (636)
T ss_pred -CCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccc
Confidence 55999999999999999999999999999999830 1
Q ss_pred -----CEEEEEeCCCcEEEEEeeCCCC
Q 040533 323 -----LTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 323 -----~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
-.+.+.+.|-.+.+||+.....
T Consensus 430 ~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 430 INSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred ccceEEEeecccccceEEEEecchhhc
Confidence 1366778899999999987544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-15 Score=134.31 Aligned_cols=240 Identities=16% Similarity=0.170 Sum_probs=162.8
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec---CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM---ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|+++|..+..... +..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+| ++
T Consensus 183 ~l~~~d~dg~~~~~---lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG 257 (435)
T PRK05137 183 RLAIMDQDGANVRY---LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DG 257 (435)
T ss_pred EEEEECCCCCCcEE---EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CC
Confidence 78899987665433 3367788999999999999988763 457999999887653 4455666778899999 78
Q ss_pred CEEE-EeeCCCc--EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDKS--IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DN--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.++. |.+||+.++. ...+..+........|+|||+.|+..+. +| .|+++|+.... ...+..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~ 331 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISF 331 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeec
Confidence 7654 5566665 7777877654 3445556666678999999998887764 33 68888865432 333333
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCC--CeEEE
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG--QKLCL 294 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~--~~i~i 294 (364)
+...+....|+|+|+.++.+.....+..|.+||+..+. ...+.....+..+.|+|+|+.++...... +.. ..+++
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~--~~~~~~~L~~ 408 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTP--GSGGAPKLYT 408 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccC--CCCCcceEEE
Confidence 34556778999999888776531123478899986554 34444444577889999999987654211 111 46888
Q ss_pred eeCCCCceeeeccccccceeEEeecCC
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
+|+..+.. ..+.. .+.+...+|+|-
T Consensus 409 ~dl~g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 409 VDLTGRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred EECCCCce-EEccC-CCCccCcccCCC
Confidence 88866544 34432 344667777763
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-15 Score=120.04 Aligned_cols=272 Identities=17% Similarity=0.257 Sum_probs=185.8
Q ss_pred eecccCCCcc--EEEE-EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceee
Q 040533 48 SNMMDWGRNN--ILAI-ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
+.-+.|.-+. ++++ ..++.|.+|++...+... .+....+.+.+++|||||+ .|.+..-+-.|.+|.+.+.+...
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c--kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC--KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEE--EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 3456777653 4544 457899999998877643 3446678899999999996 45556678899999998766543
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCC------------------------------------CcEEEEEcccCcceee
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQD------------------------------------KSIINHDVRVSNNVTS 167 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------------------------------g~i~~~d~~~~~~~~~ 167 (364)
. +-.+..+..++|+| ++++.+.+++- ..+.+||---.-. +.
T Consensus 129 ~-~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~ 205 (447)
T KOG4497|consen 129 L-PHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VY 205 (447)
T ss_pred e-cccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-ee
Confidence 2 32344567888988 88877766432 1234444221111 11
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------------CC--------------------------
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK---------------MS-------------------------- 206 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------------~~-------------------------- 206 (364)
...-.-.+..++|+|.+++|++|+.|+.+++.+--+ ..
T Consensus 206 -aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~ 284 (447)
T KOG4497|consen 206 -AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL 284 (447)
T ss_pred -eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence 111225688899999999999999999988765211 00
Q ss_pred ----------------CCcceEEec------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC
Q 040533 207 ----------------SSKCLHRFR------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ 264 (364)
Q Consensus 207 ----------------~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~ 264 (364)
....++.++ .....+.-++|++|. .++++-....-+.+-+||+++.+....+....+
T Consensus 285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~p 363 (447)
T KOG4497|consen 285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLHAVLIQKHP 363 (447)
T ss_pred ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhhhhhhhccc
Confidence 000011111 112246678999998 566665333457799999999888877878899
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCc
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
|....|+|....++...+ ...+++|.......+..- ...-.|..+.|..+|..++..+.|..
T Consensus 364 iraf~WdP~~prL~vctg------~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTG------KSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeEEEeCCCCceEEEEcC------CceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 999999999998888755 677999987664444432 33467999999999999999999864
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-17 Score=132.06 Aligned_cols=197 Identities=19% Similarity=0.235 Sum_probs=146.6
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee-
Q 040533 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI- 169 (364)
Q Consensus 91 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~- 169 (364)
.+++|+++|..|++|+.||.+|||+..+...+.....|...|.++.|+| ++++|++-+.| ..+||+.+++..+...-
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899999999999999999999999888888888888999999999999 99999999999 99999999885432222
Q ss_pred ecccCcEEEEEEcCCC-----CEEEEEeCCCeEEEEeCCCCCCCcc--eEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 170 NAHTAEVCGLKWSNEG-----NLLASGGDDNLVHVWDHSKMSSSKC--LHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
...+.....+.|+.++ ..++.....+.|+.||+........ ..+.......|.+++.+++| .+++.|+ .|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlGT--~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALGT--MD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEec--cC
Confidence 2233445667787766 3333344556677777543222111 11111223469999999999 4666655 89
Q ss_pred CeEEEEECCCCeEEEEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 243 GCIKIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
|.|.+++..+.+.++-++ |..-|+.+.|+|+.++++.... +....+..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs------~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS------DNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc------CCceeEEEEe
Confidence 999999999888877664 3467999999999999987533 6666665543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-15 Score=125.97 Aligned_cols=299 Identities=10% Similarity=0.121 Sum_probs=207.5
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-----ec-----CCcEEEEec
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-----YM-----ASKLQLWDA 116 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~~-----dg~i~iw~~ 116 (364)
++...++++ .+++.+.+..+.|++..++....... ...++++.|||-|.+|.+= .. .-.+.+|++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec----cceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 566777775 58889999999999999886332222 2278999999999988761 11 235889999
Q ss_pred CCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC--CEEEE----
Q 040533 117 ETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG--NLLAS---- 190 (364)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~---- 190 (364)
+++.....+......-++..|++ ++.+. +--..+.+.+|++...+..... -|...|+.+.+||.+ ..+|+
T Consensus 113 et~~~~s~~q~k~Q~~W~~qfs~-dEsl~-arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNGWVPQFSI-DESLA-ARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ccceehhheehhhhcCccccccc-chhhh-hhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEEccC
Confidence 99655555543333336889987 55433 3334568999998875543333 467889999999963 34443
Q ss_pred -EeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---------CCeEEEEECCCCeEEEEEe
Q 040533 191 -GGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---------DGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 191 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---------d~~i~i~d~~~~~~~~~~~ 260 (364)
.+.-+.|+||..........+..-.-....-..+.|++-|..+|+..+..- +.++++.++....+.-.+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 345678999987633222211111111223346789988877777654112 3478899988666777777
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC---CcEEEE
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD---ETLRFW 337 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~vw 337 (364)
..++|.++.|+|+++.+++..++. -..+.|||++ +.++..+ ..++-.++-|+|.|++|+.++-+ |.|-||
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfM----PAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFM----PAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecc----cceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 789999999999999999888765 8889999975 4555555 34566789999999999888754 789999
Q ss_pred EeeCCCCCcceeccCCceeeeeeccC
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|+.+.+.+..+.... -+-+.|+|.
T Consensus 342 Dv~n~K~i~~~~a~~--tt~~eW~Pd 365 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAAN--TTVFEWSPD 365 (566)
T ss_pred eccchhhccccccCC--ceEEEEcCC
Confidence 999988887776433 344677774
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=121.29 Aligned_cols=157 Identities=16% Similarity=0.313 Sum_probs=114.8
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 177 CGLKWSNEGNLLASGGD----------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
..+.|+|+|.+|++-.. -+...+|.++..........+. ..++|.+++|+|++..++++. |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~-g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIY-GSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEE-ccCCcccE
Confidence 46889999987765443 1345566554433222222222 345799999999998776664 34678999
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
+||++ ++.+..+. ...+..+.|+|+|++++++.. +...|.|.+||.++.+.+.+.... .++.++|+|||++|+
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~---~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGF---GNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEc---cCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEE
Confidence 99996 66666664 467789999999999998752 233578999999998888777533 478999999999999
Q ss_pred EEeC------CCcEEEEEeeCC
Q 040533 327 SAAA------DETLRFWEAFGP 342 (364)
Q Consensus 327 ~~~~------dg~i~vw~~~~~ 342 (364)
+++. |+.++||++...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEeccceeccccEEEEEecCe
Confidence 9864 788999998643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-15 Score=136.62 Aligned_cols=282 Identities=14% Similarity=0.195 Sum_probs=186.5
Q ss_pred eecccCCCc---cEEEEEeCCeEEEEECCCCc-----eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc
Q 040533 48 SNMMDWGRN---NILAIALGLELYLWKQENGE-----VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 48 ~~~~~~~~~---~~~~~~~~~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 119 (364)
+..++-+++ -+++++.||+|++|+...-. .....++......+.++...+.++.+|+|+.||.|++.+++..
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 334444443 37788899999999976422 2223333335778999999999999999999999999998762
Q ss_pred --c-----eeeeeecC--CCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEE
Q 040533 120 --K-----LIRNLEGH--DKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 120 --~-----~~~~~~~~--~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l 188 (364)
+ ..+....+ ..-|..-+|...... .++.+...+.|..||++...... .......+.|++++.+|.++++
T Consensus 1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wl 1210 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWL 1210 (1431)
T ss_pred ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEE
Confidence 1 11111112 223344445443444 78888889999999998665321 1223345789999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCCCe
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI 265 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v 265 (364)
+.|+..|.+.+||+|-... +..+. ++..+++.+..+|-.+ ...++++.+..+.|.+|++.+|.+...+-....+
T Consensus 1211 viGts~G~l~lWDLRF~~~---i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~ 1287 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVP---ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGA 1287 (1431)
T ss_pred EEecCCceEEEEEeecCce---eecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCC
Confidence 9999999999999986432 33332 3446788887777554 5555554236789999999999776666432111
Q ss_pred --------------------EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee----------------------
Q 040533 266 --------------------CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW---------------------- 303 (364)
Q Consensus 266 --------------------~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~---------------------- 303 (364)
....+...+..+++| +.|..|+.||....+..
T Consensus 1288 p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg------gsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~ 1361 (1431)
T KOG1240|consen 1288 PILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG------GSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLST 1361 (1431)
T ss_pred cchhhhcccccCCCCCcccceeeecccCCceeeec------CCccceeeccCCCcccccccccCccccccccchhccccc
Confidence 112222333344444 55999999997432111
Q ss_pred --------------------------eec--------cccccceeEEeecCCC-CEEEEEeCCCcEEEEE
Q 040533 304 --------------------------GEL--------QHQTSRILELSQSPDG-LTVVSAAADETLRFWE 338 (364)
Q Consensus 304 --------------------------~~~--------~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~ 338 (364)
... ..|..+|+++++.... .+|++++.||.|++|.
T Consensus 1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 1356778888776543 5889999999999994
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-17 Score=132.76 Aligned_cols=287 Identities=14% Similarity=0.233 Sum_probs=214.1
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcce-
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKL- 121 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~- 121 (364)
+++.+.|+.. .+++++.|..|.+||...++....+. .+|...|..-.|-|. .+-+++++.||.+++=.+.....
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 5677777663 35666778899999999887654443 489999998899884 45788899999999887653322
Q ss_pred --eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecccC---cEEEEEEcCC-CCEEEEEeC
Q 040533 122 --IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAHTA---EVCGLKWSNE-GNLLASGGD 193 (364)
Q Consensus 122 --~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~---~v~~~~~~~~-~~~l~~~~~ 193 (364)
...+..|.++|..++.-|.+...|.+++.|+.+.-+|++...... .....+.. ....++..|. ...+++++.
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~ 302 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS 302 (559)
T ss_pred ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence 234556999999999999888999999999999999998765321 12222333 5678888884 458999999
Q ss_pred CCeEEEEeCCCCCCC---cceEEecc------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--C---------
Q 040533 194 DNLVHVWDHSKMSSS---KCLHRFRD------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--G--------- 253 (364)
Q Consensus 194 d~~i~iwd~~~~~~~---~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~--------- 253 (364)
|-.+++||.+..... ..+..+.. ..-.|++++|+.++..++++. .|-.|+++.-.- |
T Consensus 303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~~~~G~~p~~~s~~ 379 (559)
T KOG1334|consen 303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKSMGDGSEPDPSSPR 379 (559)
T ss_pred hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccccccCCCCCCCcch
Confidence 999999998764322 11222222 234689999998888899976 488899995332 2
Q ss_pred -eEEEE-EecC---CCeEEEE-EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEE
Q 040533 254 -TCIHS-VDTK---AQICGLE-WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 254 -~~~~~-~~~~---~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 327 (364)
..+.. ++++ ..|..+- |-|...|+++| ++-|.|.||+-.+++.+..+.+...-|.||.-+|--..||+
T Consensus 380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSG------SDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSG------SDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred hhccchhhcccccccccceeeeccCccceEEec------CccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 11122 3333 2366664 55778888887 55899999999999999999887779999999999999999
Q ss_pred EeCCCcEEEEEeeCCC
Q 040533 328 AAADETLRFWEAFGPS 343 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~ 343 (364)
.+-|.-|+||-..+.+
T Consensus 454 SGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLTAE 469 (559)
T ss_pred cCCccceeeecCCccc
Confidence 9999999999875443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-16 Score=119.10 Aligned_cols=165 Identities=17% Similarity=0.293 Sum_probs=119.5
Q ss_pred EEEEeecCCCCEEEEeeC----------CCcEEEEEcccCcceeeeeec-ccCcEEEEEEcCCCCEEEEE--eCCCeEEE
Q 040533 133 ATASWNHWNGHILTSGSQ----------DKSIINHDVRVSNNVTSRINA-HTAEVCGLKWSNEGNLLASG--GDDNLVHV 199 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~i 199 (364)
..+.|+| .|++|+.-.. -|...+|.++........+.. ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4578888 7776655432 134566666544433444433 34579999999999987654 35679999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
||++ .+.+..+. ...+..+.|+|+|+.+++++.+...|.|.+||.++.+.+...++. .+..++|+|+|+++++
T Consensus 88 yd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEE
Confidence 9985 23455553 567789999999987777665456789999999999888887654 4789999999999999
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeec
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
+........|+.++||+.. |+.+.+.
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8754444568999999984 5555443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-15 Score=136.90 Aligned_cols=257 Identities=13% Similarity=0.147 Sum_probs=177.1
Q ss_pred eeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCc-------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCC
Q 040533 80 LLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETS-------KLIRNLEGHDKRVATASWNHWNGHILTSGSQD 151 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 151 (364)
+.++..|...+..++.++.. .++++|+.||+|++|+...- +...++.....++.++...+ +++.+|+++.|
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKD 1119 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCC
Confidence 44556888889899988755 89999999999999998642 12223333567889999888 99999999999
Q ss_pred CcEEEEEcccCcce------eeeeecc-cCcEE-EEEEcC-CCC-EEEEEeCCCeEEEEeCCCCCCCcceEEecccccce
Q 040533 152 KSIINHDVRVSNNV------TSRINAH-TAEVC-GLKWSN-EGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAV 221 (364)
Q Consensus 152 g~i~~~d~~~~~~~------~~~~~~~-~~~v~-~~~~~~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 221 (364)
|.|.+.+++..... ......+ .+.+. .-+|.. .+. .++.+..-+.|..||++...... ..+.....+.|
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w-~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW-RLKNQLRHGLV 1198 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH-hhhcCccccce
Confidence 99999998752210 1111112 22333 333333 233 78888888999999998754322 12223345789
Q ss_pred eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCcc---ceeeeccCCccCCCCeEEEee
Q 040533 222 KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHK---EILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~---~l~~~~~~~~~~~~~~i~i~d 296 (364)
++++.+|.+. .+++|. ..|.+.+||++-+.++....++ .++..+..+|-.+ ..++++. +..+.|.+|+
T Consensus 1199 TSi~idp~~~-WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~----~~~nevs~wn 1271 (1431)
T KOG1240|consen 1199 TSIVIDPWCN-WLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS----SSNNEVSTWN 1271 (1431)
T ss_pred eEEEecCCce-EEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc----cCCCceeeee
Confidence 9999999985 666655 8999999999999988887654 6677777776544 3333321 2488999999
Q ss_pred CCCCceeeecccc-------------------ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 297 YPHMTKWGELQHQ-------------------TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 297 ~~~~~~~~~~~~~-------------------~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
+.++..-..+... .-......+...+.++.+|+.|+.|+.||...+...
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 9887655544322 001122233334568999999999999999887665
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=120.25 Aligned_cols=247 Identities=16% Similarity=0.268 Sum_probs=178.4
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-----eeeeeecC------------CCcEEEEEeecC-CCCEEEEe
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-----LIRNLEGH------------DKRVATASWNHW-NGHILTSG 148 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~------------~~~v~~~~~~~~-~~~~l~~~ 148 (364)
.+-|.++.|..+|.+||+|..+|.|.+|.-.... ....++.| ...|..+.|.++ +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 5668899999999999999999999999754322 22334334 246788899763 33577788
Q ss_pred eCCCcEEEEEcccCccee-----------------------------------eeeecccCcEEEEEEcCCCCEEEEEeC
Q 040533 149 SQDKSIINHDVRVSNNVT-----------------------------------SRINAHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
+.|.+|++|.+....... ....+|..-|++++++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999886432100 11235777899999999998888774
Q ss_pred CCeEEEEeCCCCCCCcceEEeccc-----ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE----EEEec---
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDH-----RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI----HSVDT--- 261 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~--- 261 (364)
|=.|.+|++.-....-.+..++.+ ..-|++..|+|..-.+++-.+ ..|+|++.|++....- ..++.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhccccC
Confidence 778999998765433333334433 345889999998877777765 7999999999853211 11110
Q ss_pred ----------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC-CCCceeeeccccc------------cce---eE
Q 040533 262 ----------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY-PHMTKWGELQHQT------------SRI---LE 315 (364)
Q Consensus 262 ----------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~------------~~i---~~ 315 (364)
-..|..+.|++.|+|+++-. --+|++||+ ...+++.+++-|. ..| ..
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRD-------yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRD-------YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEec-------cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 13578899999999999863 478999999 4566777766553 122 46
Q ss_pred EeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 316 LSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 316 i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
++|+.++.+++||+..+.+++++...+.
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCc
Confidence 7899999999999999999999965543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=121.08 Aligned_cols=260 Identities=12% Similarity=0.131 Sum_probs=185.3
Q ss_pred CCCCCceEEEEcCCCC--EEEEEecCCcEEEEecCCcceeeee------ecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 85 GEDDFPTSISWSQDAK--TLAVGYMASKLQLWDAETSKLIRNL------EGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
.....|..++|.-+++ .+...+.+-.+..+.+........+ .....+|..+.. ....|++|-.+|.+.+
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQV 129 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEE
Confidence 4456788888886654 4444446667777777666554432 334566766666 4556778889999999
Q ss_pred EEcccCc---ceeeeeecccCcEEEEEEcCC-CCEEEEEeCC--CeEEEEeCCCCCCCcceEEecc---------cccce
Q 040533 157 HDVRVSN---NVTSRINAHTAEVCGLKWSNE-GNLLASGGDD--NLVHVWDHSKMSSSKCLHRFRD---------HRAAV 221 (364)
Q Consensus 157 ~d~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~---------~~~~v 221 (364)
|..+.+. .....+..+ ..+..+.-++. ...+++|+.. ..+.+||+.... .+..-+. -+-++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~---qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK---QIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce---eeeeccCCCCccccceeeeee
Confidence 9987443 112223223 44566666663 3466779888 889999987642 1222111 12356
Q ss_pred eEEEEccC-CCcEEEeecCCCCCeEEEEECCCC-eEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 222 KALAWCPY-QFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 222 ~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
+++.|-+. ..+.++++. .-+.+++||.+.+ +++.++.. ..+++++...|.++++++|.. .+.+..||.+
T Consensus 206 tdi~Fl~g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~------~g~l~~FD~r 277 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT------KGQLAKFDLR 277 (412)
T ss_pred ccceecCCCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc------cchhheeccc
Confidence 78888775 136677765 7899999999875 45677764 478999999999999999965 8999999999
Q ss_pred CCceeee-ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 299 HMTKWGE-LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 299 ~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
.++.+.. +++-.+.|++|..+|.+++|++++-|..|||+|+.+.+.+....- ...++++-+
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~ 339 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILL 339 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEe
Confidence 9998877 888899999999999999999999999999999999776654432 233444444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-14 Score=127.36 Aligned_cols=240 Identities=16% Similarity=0.119 Sum_probs=156.7
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|.+.+. .+.+..+...+....|+| +++.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|+|+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCC
Confidence 47788876544 455555777899999999 88888766533 3688999987653 22333344456789999999
Q ss_pred EEEE-EeCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 187 LLAS-GGDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 187 ~l~~-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
.|+. ...++ .|+++|+.... ...+..+........|+|+++.++.+........|.++|+.+++..+......
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~ 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 8774 44444 68888987643 33444455556678999999887776531113468888888776543332233
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC-C--cEEEEEee
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD-E--TLRFWEAF 340 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~vw~~~ 340 (364)
......|+|+|+.++..... .....|.++|+.+++... +.. ........|+|||+.++..+.+ | .|.++++.
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~---~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQ---DGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CccceEECCCCCEEEEEEcc---CCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 34567899999998876421 113368899998876433 221 1222356899999988776644 3 46666664
Q ss_pred CCCCCcceeccCCceeeeeeccC
Q 040533 341 GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
. .....+..+.+.+...+|||.
T Consensus 407 g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 G-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred C-CceEECcCCCCCcCCCccCCC
Confidence 3 333345555667888999985
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-14 Score=121.00 Aligned_cols=249 Identities=12% Similarity=0.121 Sum_probs=160.6
Q ss_pred cccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeee
Q 040533 50 MMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 50 ~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~ 126 (364)
.+.+++++ +++.+.|+.|.++|+.+++....... .....++++|+||++++++. ..+.+.++|.++.+.++.+.
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 34566643 66667799999999999997666543 34578999999999998776 68999999999999988876
Q ss_pred cC-------CCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE-eCCCeE
Q 040533 127 GH-------DKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG-GDDNLV 197 (364)
Q Consensus 127 ~~-------~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i 197 (364)
.. ..++..+..+| ... ++++.-+.+.|.+.|......+...............|+|++++++.+ ..+..|
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp --EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred cccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 42 34678888888 666 444445558888888776654443343445667889999999987665 445577
Q ss_pred EEEeCCCCCC----------------------------------------------------CcceEEecccccceeEEE
Q 040533 198 HVWDHSKMSS----------------------------------------------------SKCLHRFRDHRAAVKALA 225 (364)
Q Consensus 198 ~iwd~~~~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~ 225 (364)
.++|..+... .+.+.++.....+ .-+.
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 7777654211 1112222222222 4566
Q ss_pred EccCCCcEEEe-ecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 226 WCPYQFNVLAS-GGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 226 ~~~~~~~~~~~-~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
.+|+++++.+. ..+...++|.++|.++.+.+..+... ..+..+.|+++|+++..+.. ..++.|.+||..+.+.
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~----~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW----DGNGAIVVYDAKTLKE 351 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE------TTEEEEEETTTTEE
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe----cCCCEEEEEECCCcEE
Confidence 78999888886 11125789999999999888887644 34999999999999887754 2255899999999999
Q ss_pred eeecc
Q 040533 303 WGELQ 307 (364)
Q Consensus 303 ~~~~~ 307 (364)
+.++.
T Consensus 352 ~~~i~ 356 (369)
T PF02239_consen 352 KKRIP 356 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88876
|
... |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=131.94 Aligned_cols=209 Identities=19% Similarity=0.304 Sum_probs=152.5
Q ss_pred CcceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCc
Q 040533 44 NDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 44 ~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~ 119 (364)
..-++++++|+.++ +++++.|-.+.|||....+....+.. +|...|.++.|-| +.+++++|..|..|+++|+...
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 45579999999875 44555677999999987776655543 9999999999999 4568899999999999999742
Q ss_pred ----------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee---------eeecccCcEEEEE
Q 040533 120 ----------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS---------RINAHTAEVCGLK 180 (364)
Q Consensus 120 ----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---------~~~~~~~~v~~~~ 180 (364)
+....+..|...|..++-.|...+.+.++++||+++-+|++....... .+...--...++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 334556678999999999995559999999999999999986432111 1111223467899
Q ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCCC-----C----------cceEEec-ccc-----------cceeEEEEccCCCc
Q 040533 181 WSN-EGNLLASGGDDNLVHVWDHSKMSS-----S----------KCLHRFR-DHR-----------AAVKALAWCPYQFN 232 (364)
Q Consensus 181 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~-----~----------~~~~~~~-~~~-----------~~v~~~~~~~~~~~ 232 (364)
.+| +..+|++|+.|-..++||.+.... + .++..+. +|. ..++-+.|+|+|..
T Consensus 208 isp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtE 287 (758)
T KOG1310|consen 208 ISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTE 287 (758)
T ss_pred ecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcE
Confidence 999 456999999999999999543210 0 0122211 111 12466789999999
Q ss_pred EEEeecCCCCCeEEEEECCCCeEE
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
+|++-+ ...|+++|+..++..
T Consensus 288 lLvs~~---gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 288 LLVSWG---GEHVYLFDVNEDKSP 308 (758)
T ss_pred EEEeeC---CeEEEEEeecCCCCc
Confidence 999875 467999999776543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-13 Score=107.77 Aligned_cols=273 Identities=13% Similarity=0.183 Sum_probs=179.2
Q ss_pred ccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE-EecC------CcEEEEecCCccee
Q 040533 51 MDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYMA------SKLQLWDAETSKLI 122 (364)
Q Consensus 51 ~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d------g~i~iw~~~~~~~~ 122 (364)
++|+-+ .-++++.+...+||+.+--+...........-.+..+-| ..++||. |+.+ .+|.|||=...+++
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k~~~i 88 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLKERCI 88 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence 677765 478888899999999875332111211111122333333 3455554 3322 36999997677777
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec--ccCcEEEEEEcCCCCEEEEE-eCCCeEEE
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA--HTAEVCGLKWSNEGNLLASG-GDDNLVHV 199 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~d~~i~i 199 (364)
.++. ...+|.++.+. .+.|++.- .+.|.+|.....-+....+.. ......+++-+.+..+||.- -.-|.|.|
T Consensus 89 ~el~-f~~~I~~V~l~---r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi 163 (346)
T KOG2111|consen 89 IELS-FNSEIKAVKLR---RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQI 163 (346)
T ss_pred EEEE-eccceeeEEEc---CCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEE
Confidence 7776 67889999994 45566554 468999998754433333322 22334444433344455553 35689999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe-EEEEECCCCeEEEEEecC---CCeEEEEEcCCcc
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC-IKIWNVQKGTCIHSVDTK---AQICGLEWNRHHK 275 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~ 275 (364)
-|+...... ....+.+|.+.|.+++.+-+| .++|+++ ..|+ |||||..+|+.+..+.-+ ..+.+++|||+..
T Consensus 164 ~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~G-t~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 164 VDLASTKPN-APSIINAHDSDIACVALNLQG-TLVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEhhhcCcC-CceEEEcccCceeEEEEcCCc-cEEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 998765432 346677899999999999999 7888876 6666 799999999999998643 6799999999999
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeee------------------------ccccccceeEEeecCCCCEEEEEeCC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGE------------------------LQHQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~------------------------~~~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
+|++. ++.|++.|+.++....-.. ++-..+...-++|-.+.+.++..+.|
T Consensus 240 ~Lavs------SdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~D 313 (346)
T KOG2111|consen 240 WLAVS------SDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICAD 313 (346)
T ss_pred EEEEE------cCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeC
Confidence 99988 5599999998865321111 11112334445666554566666777
Q ss_pred CcEEEEEee
Q 040533 332 ETLRFWEAF 340 (364)
Q Consensus 332 g~i~vw~~~ 340 (364)
|.-+-+.+.
T Consensus 314 gsy~k~~f~ 322 (346)
T KOG2111|consen 314 GSYYKFKFD 322 (346)
T ss_pred CcEEEEEec
Confidence 776544443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=121.67 Aligned_cols=219 Identities=14% Similarity=0.207 Sum_probs=167.7
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCc--eeeeeeecCCCCCceEEEEcCCCC-EEEEEecC--CcEEEEecCCcceee
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGE--VQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMA--SKLQLWDAETSKLIR 123 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~iw~~~~~~~~~ 123 (364)
..++...+.++++-.+|.+.+|..+.+. -.++..+.. ...+..+.-++... ++|+|+.. ..+.|||++..+.+.
T Consensus 109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred cchhhcCCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 3344444568888889999999988544 122222222 24566666666444 56668888 789999999886655
Q ss_pred eeecC---------CCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe
Q 040533 124 NLEGH---------DKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 124 ~~~~~---------~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
.-+.- .-.++++.|.+ . ...|++++.-+.+++||.+.++.++..+...+.+++++...|+++++++|.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN 266 (412)
T ss_pred eccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec
Confidence 43321 12456788887 5 789999999999999999988888888888899999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcC
Q 040533 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR 272 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~ 272 (364)
..|.+..||++.+.. ....+.+..+.|+++..+|.+ .+++++| -|..|+|+|+++.+++......+.++.+.+.+
T Consensus 267 ~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~-~~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTH-PVLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred ccchhheecccCcee--eccccCCccCCcceEEEcCCC-ceEEeec--cceeEEEeecccchhhhhhhhhccccEEEecC
Confidence 999999999987643 223367788999999999987 4666666 89999999999988887777777788887765
Q ss_pred Cc
Q 040533 273 HH 274 (364)
Q Consensus 273 ~~ 274 (364)
+-
T Consensus 342 ~~ 343 (412)
T KOG3881|consen 342 DV 343 (412)
T ss_pred Cc
Confidence 43
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-14 Score=125.84 Aligned_cols=240 Identities=15% Similarity=0.122 Sum_probs=153.9
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC-CC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ-DK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|..... .+.+..+...+.+..|+| +++.|+..+. ++ .|.++|+.+++. ..+....+.....+|+|||+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence 57777865443 344555677899999999 8888776653 33 588889876653 22222233345789999999
Q ss_pred EEEE-EeCCCe--EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 187 LLAS-GGDDNL--VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 187 ~l~~-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
.|+. .+.++. |+++|+.... ...+..+.......+|+|+++.++.+........|.++|+.+++.........
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~ 350 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE 350 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence 7765 455664 7777876543 34444455556788999999888776541123457777887776544322223
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC-Cc--EEEEEee
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD-ET--LRFWEAF 340 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~--i~vw~~~ 340 (364)
......|+|+|++++..... .....|.++|+.+++... +... .......|+|||+.|+..+.+ |. +++++.
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~---~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRT---NGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred CCcCeeECCCCCEEEEEEec---CCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 34567999999998775421 112357778887776432 2222 122345899999988766543 33 667776
Q ss_pred CCCCCcceeccCCceeeeeeccC
Q 040533 341 GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.....+..+.+.+...+|||.
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCceEECcCCCCCcCCCccCCC
Confidence 44455556666677889999995
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-14 Score=124.13 Aligned_cols=249 Identities=11% Similarity=0.083 Sum_probs=154.7
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE---EEecCC--cEEEEecCCcceeeeeecCCCcEEEEEeec
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA---VGYMAS--KLQLWDAETSKLIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (364)
..|.+.|...+...++. .......+-+|||||+.++ +...+| .|.+.++.+++..+ +....+.....+|+|
T Consensus 165 ~~l~~~d~dG~~~~~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCCceEcc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECC
Confidence 37888888777654433 3345567889999997532 333343 58888888776433 333445556789999
Q ss_pred CCCCEEEEeeC-CC----cEEEEEcccC--cceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcce
Q 040533 140 WNGHILTSGSQ-DK----SIINHDVRVS--NNVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 140 ~~~~~l~~~~~-dg----~i~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 211 (364)
+++.|+..+. +| .+..|++..+ .................+|+|||+.|+..+ .+|...+|.+.........
T Consensus 241 -DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 241 -RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred -CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 8877776542 23 3444676542 222222222223446789999999877665 4565555543211111123
Q ss_pred EEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCe
Q 040533 212 HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQK 291 (364)
Q Consensus 212 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (364)
..+..+...+....|+|+|+.++.+........|.+||+.+++..........+....|+|+|+.++.... ......
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~---~~g~~~ 396 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG---NSNESE 396 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC---CCCCce
Confidence 33444445677899999998777765411134799999998876544434446778999999998875432 123567
Q ss_pred EEEeeCCCCceeeeccccccceeEEeecCCC
Q 040533 292 LCLWKYPHMTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
|+++|+..++..... ...+.+...+|+|-.
T Consensus 397 L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 999999877654433 334556778888753
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=126.06 Aligned_cols=243 Identities=13% Similarity=0.115 Sum_probs=162.0
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceee----eeecCCCcEEEEEe-----ecCCCCEEEEeeCCCcEEEEEcc
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR----NLEGHDKRVATASW-----NHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~v~~~~~-----~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
+....++-.|++|+..- ...+++|+...+..+. ...-......|-+| .| .+--++.|-.-|.|.+.|..
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~-~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATP-KGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCC-CCcceEEeeccCceEEecch
Confidence 34444555677776653 3468888877432211 11111112223333 23 55567788888999998876
Q ss_pred cCcceeeee----ecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 161 VSNNVTSRI----NAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 161 ~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
... ..+.+ .-.+..++++.|-| +...++++-.+|.+++||...... ...+ +-...+++.. ++
T Consensus 204 ~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~---------~t~p--~~~~~k~~~~-f~ 270 (636)
T KOG2394|consen 204 NFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG---------ATAP--SYQALKDGDQ-FA 270 (636)
T ss_pred hhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc---------CCCC--cccccCCCCe-eE
Confidence 532 11111 12347899999999 445777788999999998522100 0010 1111222222 11
Q ss_pred eecCCCCCeEEEEEC-CCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce
Q 040533 236 SGGGTQDGCIKIWNV-QKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI 313 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 313 (364)
.. .|-- .+..++..+. ..+.|..++|+|||++|++... ||.++|||..+.+.+..++..-+..
T Consensus 271 i~---------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq------DGfLRvF~fdt~eLlg~mkSYFGGL 335 (636)
T KOG2394|consen 271 IL---------TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ------DGFLRIFDFDTQELLGVMKSYFGGL 335 (636)
T ss_pred Ee---------eeeccccCCccceeEeccccccceeEcCCCceEEEEec------CceEEEeeccHHHHHHHHHhhccce
Confidence 11 1110 1113333322 3458999999999999999854 9999999999999888888777889
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.|++|||||+||++|++|-.|.||.+..++.+..-.+|.+.|..|+|.|
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999999999987
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-14 Score=124.80 Aligned_cols=238 Identities=14% Similarity=0.137 Sum_probs=155.7
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|.... ..+.+..+...+...+|+| +++.|+.+..+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 5888887543 3455555777789999999 89988877644 4799999987653 23334556677799999998
Q ss_pred EEEEE-eCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 187 LLASG-GDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 187 ~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
.|+.. +.++ .|++||+.... ...+..+........|+|+++.++.+........|.++|+.+++.........
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG 322 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 77644 4444 58888877543 33344444455677899999877766531112368888988776544433455
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC---cEEEEEee
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE---TLRFWEAF 340 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~vw~~~ 340 (364)
....+.|+|+|++++.+... .....|.+||+.++... .+... .......|+|+|++|+..+.++ .+++.+..
T Consensus 323 ~~~~~~~spdg~~i~~~~~~---~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHRE---GGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CccCeEECCCCCEEEEEEcc---CCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 67788999999998877531 11237899998875432 23222 2235678999999888877654 34454433
Q ss_pred CCCCCcceeccCCceeeeeec
Q 040533 341 GPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~s 361 (364)
+.....+..+.+.+..++||
T Consensus 398 -g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 398 -GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred -CceeeECCCCCCCcCCCCCC
Confidence 33344444445566777664
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-12 Score=104.26 Aligned_cols=289 Identities=10% Similarity=0.155 Sum_probs=191.4
Q ss_pred CCeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCC--cceee--eeecCCCcEEE
Q 040533 64 GLELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAET--SKLIR--NLEGHDKRVAT 134 (364)
Q Consensus 64 ~~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~--~~~~~--~~~~~~~~v~~ 134 (364)
+..|++|++.+ ++.. ..++-.+.+.++-++|+|+++.|.++-.+ |.|.-|.++. |++.. .......+-..
T Consensus 15 s~gI~v~~ld~~~g~l~-~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELS-LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccc-hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 57899998873 3332 23333667889999999999999887654 6788887764 44322 22222334478
Q ss_pred EEeecCCCCEEEEee-CCCcEEEEEcccCcceee--eeecccCc----------EEEEEEcCCCCEEEEEeC-CCeEEEE
Q 040533 135 ASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTS--RINAHTAE----------VCGLKWSNEGNLLASGGD-DNLVHVW 200 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~iw 200 (364)
+++++ ++++++++. ..|.|.++-++....+.. ....|.+. +....+.|++++|++..- -..|.+|
T Consensus 94 vsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 89999 888888776 457899998866432221 22234444 788899999999988762 2469999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eE---EEEE-------ecCCCeEEEE
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TC---IHSV-------DTKAQICGLE 269 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~---~~~~-------~~~~~v~~~~ 269 (364)
++..+.........-......+.|.|+|+++...+..- .+++|.+|..... .. ++.+ .......++.
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 98855432211111233456789999999988777765 8999999998773 22 2222 2235678899
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeee---ccccccceeEEeecCCCCEEEEEeCC-CcEEEEEeeCCCC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGE---LQHQTSRILELSQSPDGLTVVSAAAD-ETLRFWEAFGPSG 344 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~vw~~~~~~~ 344 (364)
++++|++|+++... ...|.+|.+... ..+.. ...+....+...+++.|++|+++..+ ..|.+|..+...-
T Consensus 251 is~dGrFLYasNRg-----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 251 ISPDGRFLYASNRG-----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred ECCCCCEEEEecCC-----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 99999999998642 447888877543 22222 22344457899999999999998865 4588988775443
Q ss_pred Cccee---ccCCceeeeeec
Q 040533 345 SGDFV---SHLDGLLSLKVS 361 (364)
Q Consensus 345 ~~~~~---~~~~~v~~~~~s 361 (364)
.-... .......||.|.
T Consensus 326 ~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 326 RLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred eEEecccccCCCCcEEEEEc
Confidence 22221 223345666664
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-14 Score=124.85 Aligned_cols=238 Identities=16% Similarity=0.105 Sum_probs=154.6
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.++|...+....+. .+...+....|+|||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+| ++
T Consensus 180 ~l~~~d~~g~~~~~l~---~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG 254 (430)
T PRK00178 180 TLQRSDYDGARAVTLL---QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DG 254 (430)
T ss_pred EEEEECCCCCCceEEe---cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CC
Confidence 5888888766543332 556778999999999999876643 369999998886543 333344556789999 88
Q ss_pred CEEE-EeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DN--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.+| .|.++|+.++. ...+..+........|+|+|+.++..+. ++ .|+++|+..++. ..+..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~ 328 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTF 328 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeec
Confidence 7766 455555 58888887665 3334445555667899999998776653 33 577777765432 22221
Q ss_pred cccceeEEEEccCCCcEEEeecCCCC--CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQD--GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
.........|+|+++.++.+.. .+ ..|.++|+.+++... +..........|+|+|+.++..... +....+++
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~--~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~---~g~~~l~~ 402 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHR--QDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQ---QGRGVLML 402 (430)
T ss_pred CCCCccceEECCCCCEEEEEEc--cCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEec---CCceEEEE
Confidence 1223345789999988777653 33 368899998876533 3332233456899999998876421 12345777
Q ss_pred eeCCCCceeeeccccccceeEEeecCC
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++.. +.....+..+.+.+...+|+|-
T Consensus 403 ~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 403 VSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECC-CCceEECcCCCCCcCCCccCCC
Confidence 7774 3344445555566777788763
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=115.46 Aligned_cols=287 Identities=16% Similarity=0.271 Sum_probs=191.3
Q ss_pred CCCCcceeecccCCCccEEEEEeCCeEEEEEC-CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--
Q 040533 41 NLRNDYYSNMMDWGRNNILAIALGLELYLWKQ-ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE-- 117 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-- 117 (364)
+..+..+...+-.-.++++.++.|.+++||-- +.++.-+.... .-..+++++.+.++...|++|-.+|++.-+.+.
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 33444444444444468999999999999964 33443222221 346788999999999999999999999888654
Q ss_pred --CcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE-------------------------------------
Q 040533 118 --TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD------------------------------------- 158 (364)
Q Consensus 118 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d------------------------------------- 158 (364)
....++....|..++..+-|+- ....+++.+.|..+.---
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM 179 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence 3455666677888888888876 666676666664432111
Q ss_pred --cc-cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 159 --VR-VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 159 --~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
+. +.-.++..+.+|.+.+.+++|.+....|++|..|..+.+||+--. ......+.+|...|..+...+.-..+++
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~~l~S 257 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTRQLIS 257 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhhhhhhhheeeee
Confidence 10 011345667889999999999999999999999999999998643 2346677889999999988877766666
Q ss_pred eecCCCCCeEEEEECCCCeEEEE-E----------------------------------ecCCCeEEEEEcCCccceeee
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHS-V----------------------------------DTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~-~----------------------------------~~~~~v~~~~~~~~~~~l~~~ 280 (364)
++ .||.|.+||+........ . .....+...+-+....+...|
T Consensus 258 ~~---edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 258 CG---EDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred cc---CCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 54 699999999975432100 0 001112222222223333333
Q ss_pred ccCCccCCCCeEEEeeCC-------CCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 281 HGFSSSGDGQKLCLWKYP-------HMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
. +-.+++-|.- +..++..+..-...|+.+.+...-..|+|++.|..|+|||++.
T Consensus 335 ~-------e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 335 F-------EFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred c-------eeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2 3445555431 1223333333334689999988888999999999999999864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-14 Score=117.84 Aligned_cols=263 Identities=15% Similarity=0.201 Sum_probs=175.8
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC-C
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG-H 143 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 143 (364)
-.+.+|+.+++.....+......+ .+..|++|..+.|-- ..+.+++|++.+.+.+.. .-|...|+.+.++|... .
T Consensus 105 pn~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 105 PNVLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPP 180 (566)
T ss_pred CceeeeeeccceehhheehhhhcC--cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCc
Confidence 367799998854433333322233 588999887654433 457899999877443322 33678899999999313 3
Q ss_pred EEEE-----eeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCC-EEEEEe--CC---------CeEEEEeCCC
Q 040533 144 ILTS-----GSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGN-LLASGG--DD---------NLVHVWDHSK 204 (364)
Q Consensus 144 ~l~~-----~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d---------~~i~iwd~~~ 204 (364)
.+|+ .+.-+.|++|...... ..+..-.-....=..+.|++-|. +|+.++ -| .++++.++..
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 4433 2445579999876222 11111111223335688888665 333222 22 3577777662
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
. .....+ ...++|.++.|+|+++.+.++. |.+-..+.|||++ +.++..+ ..++-+++-|+|.|++++.++
T Consensus 261 -~--s~~V~L-~k~GPVhdv~W~~s~~EF~Vvy-GfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp~g~ii~lAG--- 330 (566)
T KOG2315|consen 261 -E--SVSVPL-LKEGPVHDVTWSPSGREFAVVY-GFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNPHGNIILLAG--- 330 (566)
T ss_pred -c--eEEEec-CCCCCceEEEECCCCCEEEEEE-ecccceEEEEcCC-CCEeEeC-CCCCccceEECCCCCEEEEee---
Confidence 1 222233 2478999999999998777776 4688899999985 5566555 456778999999999987653
Q ss_pred ccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC------CCcEEEEEeeCCC
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA------DETLRFWEAFGPS 343 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------dg~i~vw~~~~~~ 343 (364)
.+.-.|.|.+||..+.+++..+.... -+-..|+|||++++|++. |+.++||++....
T Consensus 331 FGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 23458999999999999998887644 356899999999999864 7889999987643
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-14 Score=122.84 Aligned_cols=237 Identities=16% Similarity=0.127 Sum_probs=152.7
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.++|........+. .+...+.+.+|+|||++|+.+..+ ..|++||+.+++... +..+...+.+++|+| ++
T Consensus 171 ~l~~~d~~g~~~~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg 245 (417)
T TIGR02800 171 ELQVADYDGANPQTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DG 245 (417)
T ss_pred eEEEEcCCCCCCEEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CC
Confidence 6888888755543333 456678899999999999987644 479999998876543 333556677899999 77
Q ss_pred CEEE-EeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-N--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.++ .|++||+.++. ...+..+........|+|+++.|+..+.. + .|+++|+.... ...+..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~ 319 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTF 319 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeec
Confidence 7665 445444 58888887654 33333444445577899999988766543 3 57778876432 233443
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
+...+....|+|+++.++.+........|.+||+.++... .+..........|+|+|+.++..... .....+++.+
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~---~~~~~l~~~~ 395 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTR---GGRGVLGLVS 395 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeC---CCcEEEEEEE
Confidence 4556778899999977777653111127999999876543 33333334567899999988876531 1123466665
Q ss_pred CCCCceeeeccccccceeEEee
Q 040533 297 YPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
. +++....+..+.+.+..++|
T Consensus 396 ~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 T-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C-CCceeeECCCCCCCcCCCCC
Confidence 4 34444555444444454444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-13 Score=107.66 Aligned_cols=269 Identities=15% Similarity=0.195 Sum_probs=187.6
Q ss_pred CCeEEEEECCCCceeeeeeec-CCCCCceEEEEcC---CCC-EEEEEecCCcEEEEecCCcceeeeeecCC------CcE
Q 040533 64 GLELYLWKQENGEVQKLLKVT-GEDDFPTSISWSQ---DAK-TLAVGYMASKLQLWDAETSKLIRNLEGHD------KRV 132 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~---~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~v 132 (364)
-|.+.+|++...+..+.-++. .....+..+.|.. +|. .++-+...|.|.+|..........+++-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 368899998887765532222 2345577788864 455 56667788999999876555444444321 124
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCc-ceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 210 (364)
.++.|++ .+..++++..+|.+.+-+..... ...+..+.|.-++....|+. +.+++++|+.|+.+..||+|.+.. -.
T Consensus 125 lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i 202 (339)
T KOG0280|consen 125 LSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FI 202 (339)
T ss_pred eEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-ee
Confidence 5778988 88889999999998855543222 12336788999999999987 457999999999999999994431 22
Q ss_pred eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEecCCCeEEEEEcCCcc--ceeeeccCCccC
Q 040533 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVDTKAQICGLEWNRHHK--EILSGHGFSSSG 287 (364)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~~~ 287 (364)
-+..+.|...|.++.-+|..+..+++|+ .|..|++||.++ ++++..-...+.|..+.++|.-. .+++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C------- 273 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC------- 273 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH-------
Confidence 2225568889999999998889999977 999999999995 77887777778999999999755 23222
Q ss_pred CCCeEEEeeCCCC--c---eeeeccccccceeEEeecCCCCEEEEEe-CCCcEE-EEEeeCCC
Q 040533 288 DGQKLCLWKYPHM--T---KWGELQHQTSRILELSQSPDGLTVVSAA-ADETLR-FWEAFGPS 343 (364)
Q Consensus 288 ~~~~i~i~d~~~~--~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~-vw~~~~~~ 343 (364)
.-+..+|-+.... + .....+.|.+-...-.|.....+|||++ .|..++ +|-.-++.
T Consensus 274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 2444556555433 2 3334556777777777765556788875 566644 77654443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-12 Score=108.09 Aligned_cols=270 Identities=13% Similarity=0.084 Sum_probs=169.9
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----------CCcEEEEecCCcceeeeeecCC-----
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----------ASKLQLWDAETSKLIRNLEGHD----- 129 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~----- 129 (364)
+.|.+.|..+++....... +. ....+ +|||++.|+++.. +..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 7999999999987666553 22 23334 9999998887765 6789999999999998877422
Q ss_pred --CcEEEEEeecCCCCEEEEee-C-CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 130 --KRVATASWNHWNGHILTSGS-Q-DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 130 --~~v~~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.....++++| ++++|+... . +..|.+.|+.+++. +..+.- .+...-+..+++..++ -+.||......+...
T Consensus 103 ~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~v-p~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 103 VGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDV-PDCYHIFPTANDTFFM--HCRDGSLAKVGYGTK 177 (352)
T ss_pred ccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcE-EEEEeC-CCCcEEEEecCCccEE--EeecCceEEEEecCC
Confidence 2234788999 998888766 3 68999999997764 333322 1222222222222221 223444443333221
Q ss_pred CCCc--ceEEeccccccee-EEEEcc-CCCcEEEeecCCCCCeEEEEECCCC-----eEEEEEec--------CCCeEEE
Q 040533 206 SSSK--CLHRFRDHRAAVK-ALAWCP-YQFNVLASGGGTQDGCIKIWNVQKG-----TCIHSVDT--------KAQICGL 268 (364)
Q Consensus 206 ~~~~--~~~~~~~~~~~v~-~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~-----~~~~~~~~--------~~~v~~~ 268 (364)
.... ....+.....++. .-.|.+ ++..++++ .+|+|.+.|+... +....+.. .+.+..+
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs----~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT----YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcEEEEe----cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 1100 0001111001100 003455 77666665 3599999996443 22322211 1224459
Q ss_pred EEcCCccceeeec-cCC---ccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEe-CCCcEEEEEeeCC
Q 040533 269 EWNRHHKEILSGH-GFS---SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAA-ADETLRFWEAFGP 342 (364)
Q Consensus 269 ~~~~~~~~l~~~~-~~~---~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~i~vw~~~~~ 342 (364)
+++++++.+++.. +-. --...+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..++
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 9999999988742 100 001136899999999999998874 34789999999999 888776 5788999999999
Q ss_pred CCCcce
Q 040533 343 SGSGDF 348 (364)
Q Consensus 343 ~~~~~~ 348 (364)
+.++.+
T Consensus 333 k~i~~i 338 (352)
T TIGR02658 333 KELSSV 338 (352)
T ss_pred eEEeee
Confidence 888877
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-13 Score=121.80 Aligned_cols=238 Identities=15% Similarity=0.112 Sum_probs=152.4
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-C--cEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-S--KLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.++|........+. .+...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +..........+|+| ++
T Consensus 199 ~l~i~d~dG~~~~~l~---~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG 273 (448)
T PRK04792 199 QLMIADYDGYNEQMLL---RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DG 273 (448)
T ss_pred EEEEEeCCCCCceEee---cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CC
Confidence 6777787665443222 456678899999999999876543 2 58899998876433 222233445789999 78
Q ss_pred CEEE-EeeCCCc--EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDKS--IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DN--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.+|. |.++|+.+++ ...+..+.......+|+||++.++..+. ++ .|+++|+..++ ...+..
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~----~~~Lt~ 347 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK----VSRLTF 347 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEEec
Confidence 7665 4566665 7777877554 3334445555677899999998876653 33 46666765443 222221
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
........+|+|+|+.++.+.. .++ .|.++|+.+++... +..........|+|+|+.++..... .....+++
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~---~g~~~l~~ 421 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTY---QGKQVLAA 421 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEec---CCceEEEE
Confidence 2223345789999988777654 344 56678888776533 3222223355899999998765421 11335777
Q ss_pred eeCCCCceeeeccccccceeEEeecCC
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++. +++....+..+.+.+...+|+|-
T Consensus 422 ~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 422 VSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCCC
Confidence 786 56666666666667788888873
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-14 Score=120.33 Aligned_cols=259 Identities=15% Similarity=0.172 Sum_probs=179.3
Q ss_pred CCCCCceEEEEcCCCCEE-EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.+...-+.|..+|||+|+ |+|...-.|++||+....+...-......|.-.-.+- +-..++.-..|.+|-+.... +.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak~-G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAKY-GR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEecc-chhhheEeecCceeeehhhc-Ce
Confidence 577788999999999976 5677888999999986554332221223343333333 44555555667777654422 22
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
.....+ ...-..|+++.-..-|+.++....|+-+++..+. .+..+....+.++++..++.. .|+++|+ .+|
T Consensus 127 hy~~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr---fL~P~~~~~~~lN~v~in~~h-gLla~Gt--~~g 197 (703)
T KOG2321|consen 127 HYRTRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR---FLNPFETDSGELNVVSINEEH-GLLACGT--EDG 197 (703)
T ss_pred eeeeec---CcCCccccccCCCccEEEeecCcceEEEEccccc---cccccccccccceeeeecCcc-ceEEecc--cCc
Confidence 111111 1223456666544445556666678888877654 466676677889999999976 7888876 999
Q ss_pred eEEEEECCCCeEEEEEecCC------------CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-ccc
Q 040533 244 CIKIWNVQKGTCIHSVDTKA------------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQT 310 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~ 310 (364)
.|..||.+....+..+.... .|+++.|+.+|-.+++|.. .|.+.|||++..+++.... +..
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------TGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc------CCcEEEEEcccCCceeecccCCc
Confidence 99999999887777665332 3999999999999999966 9999999999988876654 234
Q ss_pred cceeEEeecCC--CCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 311 SRILELSQSPD--GLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 311 ~~i~~i~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
-+|..+.|.+. +..+++.. ...++|||-.+++....+.. ...++++++=|
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p 323 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVP 323 (703)
T ss_pred cceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccc-cCCcCceeeec
Confidence 57899999776 34555543 35789999999988766543 33466666654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-13 Score=119.88 Aligned_cols=244 Identities=15% Similarity=0.123 Sum_probs=151.3
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCE---EEEeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHI---LTSGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (364)
..|.+.|.+.+. .+.+.........-+|+| +++. +++...+| .|.+.++..++. ..+....+.....+|+|
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECC
Confidence 357777776544 344554556677889999 7763 23444444 577778876653 33333455566789999
Q ss_pred CCCEEEEEeC-----CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe--EEEEECCC-CeE
Q 040533 184 EGNLLASGGD-----DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC--IKIWNVQK-GTC 255 (364)
Q Consensus 184 ~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~-~~~ 255 (364)
||+.|+..+. +..+..|++......................+|+|+|+.++.+.. .+|. |.++++.. +..
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~--~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN--KDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC--CCCCceEEEEECcccccc
Confidence 9998887653 223444676543222222222222234467899999987777654 4564 44445532 222
Q ss_pred EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC---C
Q 040533 256 IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA---D 331 (364)
Q Consensus 256 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d 331 (364)
...+. ....+....|+|+|+.++..... .....|.+||+.+++.... ......+....|+|||+.|+..+. .
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~---~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVI---KGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcC---CCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCC
Confidence 33333 23456788999999988865421 1245799999988876433 323345678999999998875433 3
Q ss_pred CcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 332 ETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..|+++++.+++... +....+.+...+|||.
T Consensus 395 ~~L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 395 SELYLISLITKKTRK-IVIGSGEKRFPSWGAF 425 (428)
T ss_pred ceEEEEECCCCCEEE-eecCCCcccCceecCC
Confidence 568888887765433 3334556778899884
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=116.64 Aligned_cols=278 Identities=14% Similarity=0.189 Sum_probs=192.9
Q ss_pred eeecccCCCcc--EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGRNN--ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.++.+.-+|++ ++|.+ ..-.|++||+....+..-..+ ....|.-.-++.|-..++.-..|..|.+..- -|...
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--Dae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~hy- 128 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--DAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRHY- 128 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc--cccceeEEEeccchhhheEeecCceeeehhh-cCeee-
Confidence 35667777765 44444 457999999987765333222 1334454555656666666667877776642 23221
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+. -...-..++++..+.++++.|+ ...|+-++++.+. .+..+....+.++++..++...+|++|+.+|.|..||.+
T Consensus 129 ~~R-IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGr-fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTR-IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGR-FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eee-cCcCCccccccCCCccEEEeec-CcceEEEEccccc-cccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111 1223456677653555555544 4578888998776 466676777899999999988899999999999999987
Q ss_pred CCCCCcceE---Eeccccc-----ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCC
Q 040533 204 KMSSSKCLH---RFRDHRA-----AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRH 273 (364)
Q Consensus 204 ~~~~~~~~~---~~~~~~~-----~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~ 273 (364)
....-..+. ....|.+ .|+++.|+.+| .-+++|. .+|.+.|||+++.+++..-.+. .+|..+.|.+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeec--cCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 653311111 1112333 49999999887 5555654 8999999999999988777664 67889999776
Q ss_pred --ccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 274 --HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 274 --~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+..+++. +...++|||-.+++....+... ..+..+++-|++.+++++-.++.+..|=+..-
T Consensus 283 ~~q~~v~S~-------Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 283 DQQNKVVSM-------DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCCceEEec-------chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 4445554 2678999999999999888754 44999999999999999999888877765543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=125.98 Aligned_cols=286 Identities=17% Similarity=0.240 Sum_probs=198.9
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC--CEEEEEecCCcEEEEecCCc---ce
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETS---KL 121 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~---~~ 121 (364)
..++..+|. +-++.+....+++.|+...-.....-..-..-.|-.+.|+|.. .+-++......-.+|++... ..
T Consensus 27 ~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI 106 (1081)
T KOG0309|consen 27 FNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI 106 (1081)
T ss_pred ccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce
Confidence 344444442 2233333445666676644322222111224457788898743 45566666778889998533 33
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
-..+.+|...|+.+.|+|++...+++++.|-.+..||+++...+......-......++|+-....+.+.+....|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 44567899999999999999999999999999999999988877777766667778899998554555566677899999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC--eEEEEEecCCCeEEEEEcCCccceee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG--TCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
++.+. .++..+++|...|..+.|+..-...+.+.+ .|++|+.||..+. +..+......++..-.+.|-|.-.+.
T Consensus 187 ~r~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 187 LRKGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred ccCCC--cceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99875 467888889999999999876555666655 8999999998754 33455556677777777776554333
Q ss_pred eccCCccCCCCeEEEeeCC----------CCceeeeccccccceeEEeecCCC----------CEEEEEeCCCcEEEEEe
Q 040533 280 GHGFSSSGDGQKLCLWKYP----------HMTKWGELQHQTSRILELSQSPDG----------LTVVSAAADETLRFWEA 339 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~----------~~~~~~~~~~~~~~i~~i~~~~~~----------~~l~~~~~dg~i~vw~~ 339 (364)
-.. -.++.+.+++.+ ..+++..+.+|...|....|-..+ -.|+|-+.|..+++|-+
T Consensus 263 mp~----~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 263 MPM----VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred ccc----cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 211 013355555443 246788899999888777664432 27999999999999988
Q ss_pred eC
Q 040533 340 FG 341 (364)
Q Consensus 340 ~~ 341 (364)
.+
T Consensus 339 ~~ 340 (1081)
T KOG0309|consen 339 DS 340 (1081)
T ss_pred cH
Confidence 65
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-11 Score=104.52 Aligned_cols=262 Identities=11% Similarity=0.114 Sum_probs=166.1
Q ss_pred ecccCCCc--cEEEEEe----CCeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC-
Q 040533 49 NMMDWGRN--NILAIAL----GLELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET- 118 (364)
Q Consensus 49 ~~~~~~~~--~~~~~~~----~~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~- 118 (364)
.-+.++++ .+.++.. ++.|..|++.. +++..+.+..........++++|++++|+++. .+|.|.++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 33555553 3555554 46888888765 56555555543456678899999999999887 488999999986
Q ss_pred cceeee---ee----------cCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcc-eee--e-eecccCcEEEEE
Q 040533 119 SKLIRN---LE----------GHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNN-VTS--R-INAHTAEVCGLK 180 (364)
Q Consensus 119 ~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~-~~~--~-~~~~~~~v~~~~ 180 (364)
+..... +. .......++.|+| +++++++... ...|.+|++..... +.. . ..........+.
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 333222 11 1234578999999 8887777643 34799999876552 211 1 123345678999
Q ss_pred EcCCCCEEEEEe-CCCeEEEEeCCCCC-CCcceEEeccc------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-
Q 040533 181 WSNEGNLLASGG-DDNLVHVWDHSKMS-SSKCLHRFRDH------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ- 251 (364)
Q Consensus 181 ~~~~~~~l~~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~- 251 (364)
|+|+++++++.. .++.|.++++.... ..+.+...... ......+.++|++++++++.. ..+.|.+|++.
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~ 276 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDP 276 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEec
Confidence 999999887665 56789999887211 11222222211 124678999999999988876 68899999993
Q ss_pred -CCe--EEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC--CCCceeeecc-ccccceeEEee
Q 040533 252 -KGT--CIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY--PHMTKWGELQ-HQTSRILELSQ 318 (364)
Q Consensus 252 -~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~--~~~~~~~~~~-~~~~~i~~i~~ 318 (364)
+++ .+..+.. ......+.++|+|++|+++. ..++.|.+|++ .++.....-. ..-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~-----~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN-----QDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE-----TTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe-----cCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 333 3344444 34589999999999999876 34788999976 4554433221 12233455554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-12 Score=113.31 Aligned_cols=247 Identities=13% Similarity=0.174 Sum_probs=169.2
Q ss_pred eeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC------------CEEE
Q 040533 36 ILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA------------KTLA 103 (364)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~ 103 (364)
++..|....+ .++++|++.+++|.++...|.+-|..+-+..+.. +-|...|+.+.|.|-. -+||
T Consensus 8 tlpG~l~~sN--~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsi--e~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 8 TLPGPLSRSN--RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSI--ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred cCCCCCCccc--ccccccCccceEEEecCceEEEEehhhhhhhhcc--ccCccceeEEEeccCCCchhccCccccceeEE
Confidence 3344433334 7889999999999999999999998877765444 4788999999998721 2678
Q ss_pred EEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecC--CC-CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE
Q 040533 104 VGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW--NG-HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180 (364)
Q Consensus 104 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 180 (364)
++.-.|.|.+||...+..+..+..|..++..++|-|. +. ++|++-....++.+|+..+++.+.+.- .......|+.
T Consensus 84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~ 162 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFR 162 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeee
Confidence 8888999999999999988899999999999999762 22 567777777899999999998755433 3334567799
Q ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCCC----CcceEEeccccc-------------------------ceeEEEEccCC
Q 040533 181 WSN-EGNLLASGGDDNLVHVWDHSKMSS----SKCLHRFRDHRA-------------------------AVKALAWCPYQ 230 (364)
Q Consensus 181 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~-------------------------~v~~~~~~~~~ 230 (364)
+.| |.+.+..-+..|.+.+.+.-.... ++..+.-..|.+ ..-.++|+|.-
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence 999 667777777788887776532211 111111111111 01135678876
Q ss_pred CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcC--CccceeeeccCCccCCCCeEEEee
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNR--HHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
++++... ....+.++|++-..++..+..+ +.+.-+.+-| ....+++.+. +|.+.+|-
T Consensus 243 rn~lfi~---~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~------nG~ltirv 302 (1062)
T KOG1912|consen 243 RNILFIT---FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHS------NGRLTIRV 302 (1062)
T ss_pred hceEEEE---eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEec------CCeEEEEE
Confidence 6666654 4788999999887777666543 2233333333 3444555544 56665554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-12 Score=105.90 Aligned_cols=300 Identities=12% Similarity=0.121 Sum_probs=197.5
Q ss_pred cceeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---------------
Q 040533 45 DYYSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--------------- 108 (364)
Q Consensus 45 ~~~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------- 108 (364)
+..+....|||.+ .++...-..|.+|....... +..+ . ...|..+.|||.+++|.+=+..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~--l~~~-~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK--LVRF-R-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhh--eeee-e-cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 3457788899965 55555567899999877663 3333 2 3458999999999999985432
Q ss_pred CcEEEEecCCcceeeeeecCCCc--EE-EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec-ccCcEEEEEEcCC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKR--VA-TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA-HTAEVCGLKWSNE 184 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~ 184 (364)
..+.+||+.+|..+..+.....+ .. -+.|+. ++.++|-. ....+.++++ +.......+.. ....|...+|+|.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 35999999999999888876555 44 678887 77666655 3447899997 34321111111 1356888999995
Q ss_pred C--CEEEE-----EeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec------CC--CCCeEEEEE
Q 040533 185 G--NLLAS-----GGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG------GT--QDGCIKIWN 249 (364)
Q Consensus 185 ~--~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------g~--~d~~i~i~d 249 (364)
+ ..|+. .+.++.+++|.+..... +.+-.-....-..+.|.+.|.++++-.- .+ -+..+++++
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~---l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSV---LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCe---eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 4 34443 45678899999874322 2221112223346889998887766431 00 135688888
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 250 VQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
++...+.-.....++|...+|.|.++.+++..++. .-.+.++|++.. ....+ ..+.=..+.|+|.+++++.++
T Consensus 262 ~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~----pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 262 ITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM----PASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred ecccccceeccccccceeeeecccCCceeEEeccc----ccceeecccccc-eEEec--CCcccccccccCcccEEEEec
Confidence 87544443445678999999999999988776543 888999998765 33332 233446788999999998877
Q ss_pred CC---CcEEEEEeeCCCCCc-ceeccCCceeeeeeccC
Q 040533 330 AD---ETLRFWEAFGPSGSG-DFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 330 ~d---g~i~vw~~~~~~~~~-~~~~~~~~v~~~~~sp~ 363 (364)
-| |.+-+||........ .+.+. ...-+.|||.
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd 370 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPD 370 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecC--CceEeeccCC
Confidence 65 679999987655443 33322 2233456653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=114.11 Aligned_cols=259 Identities=15% Similarity=0.218 Sum_probs=179.5
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---------------eeeeeecCCCcEEEEEeecCCCCEEEEeeCC
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---------------LIRNLEGHDKRVATASWNHWNGHILTSGSQD 151 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 151 (364)
.....|++|+....++|+|+.||.++|..+.+.. .-+++.+|...|..+.|+. +.+.|.+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCC
Confidence 4457899999999999999999999999886431 1246788999999999998 88899999999
Q ss_pred CcEEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC
Q 040533 152 KSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230 (364)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (364)
|.|.+|-+-.+.-...... ...+.|.+++|+.+|..++....||.|.+=.+...... -+.++ ......+.|++|.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw--gKeLk--g~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW--GKELK--GQLLAHVLWSEDL 168 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec--chhcc--hheccceeecccH
Confidence 9999999987764433333 24567899999999999999999999887665432111 01111 1223468899998
Q ss_pred CcEEEeecCCCCCeEEEEECCCCe-------EEEEEe-----cCCCeEEEEEc--------CCccceeeeccCCccCCCC
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGT-------CIHSVD-----TKAQICGLEWN--------RHHKEILSGHGFSSSGDGQ 290 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~-------~~~~~~-----~~~~v~~~~~~--------~~~~~l~~~~~~~~~~~~~ 290 (364)
+.+++.- ..|.+.+||.+..- +.-... .+..+..+.|. |+.+.++++.. +|
T Consensus 169 ~~~Lf~~---ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~------nG 239 (1189)
T KOG2041|consen 169 EQALFKK---ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA------NG 239 (1189)
T ss_pred HHHHhhh---cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc------Cc
Confidence 7666632 68999999986421 111111 12235555554 46666776654 67
Q ss_pred eEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC---------CcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 291 KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD---------ETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
.+.|..-.+......+.. .-.+..+.|+++|..|+.++.| +.|.++.. -+..+.+++.....|++++|-
T Consensus 240 r~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred eehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEc
Confidence 776655433322222222 2568899999999999998764 24666643 345667777778889998884
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.2e-12 Score=112.42 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=118.9
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee-eeecCCCcEEEE
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR-NLEGHDKRVATA 135 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~ 135 (364)
.+.+++.-+.|.+|+....+. +. .+.+|++.|.++.|+.||.++++.++|.++++|++++.+... ..-+|..+|..+
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~-p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNK-PI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEEeccccccEEEEeccccCC-cc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 466666779999999883332 22 566999999999999999999999999999999999998776 666799999999
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+|.| + .+++++.|.+.++|+.+... ...+..|. ..+..++..++...+++++.|+.+++||+..
T Consensus 225 ~~~~-n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLP-N--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eecc-c--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9988 5 99999999999999776333 44566665 5689999999999999999999999999754
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=112.46 Aligned_cols=290 Identities=17% Similarity=0.259 Sum_probs=200.0
Q ss_pred CCCCcceeecccCCCc-c-EEEEEeCCeEEEEECCCCce-------------eeeeeecCCCCCceEEEEcCCCCEEEEE
Q 040533 41 NLRNDYYSNMMDWGRN-N-ILAIALGLELYLWKQENGEV-------------QKLLKVTGEDDFPTSISWSQDAKTLAVG 105 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~iw~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 105 (364)
.+++.....+++|+.+ + +.+++.||.+++..+.+... ..-.++.||...|.-+.|+.+.+.|-+.
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 4556777899999974 4 55667899999998765321 1224567999999999999999999999
Q ss_pred ecCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC
Q 040533 106 YMASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 106 ~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (364)
..+|.|.||-+-.|.....+. ...+-|.+++|+. +|..++....||.|.+=.++..+..-+.+++ .....+.|++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~ 166 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSE 166 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecc
Confidence 999999999998886554433 2456799999999 9999999999999988777644322222222 2234688999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC----cceEE----ecccccceeEEEEc--------cCCCcEEEeecCCCCCeEEE
Q 040533 184 EGNLLASGGDDNLVHVWDHSKMSSS----KCLHR----FRDHRAAVKALAWC--------PYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 184 ~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~----~~~~~~~v~~~~~~--------~~~~~~~~~~~g~~d~~i~i 247 (364)
|.+.++.+-..|.+.+||....-.. .+... +......+-.+.|. |+.+.+.++- ..|.+.+
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy---~nGr~Qi 243 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY---ANGRMQI 243 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE---cCceehh
Confidence 9998888888999999996532110 11011 11112235555553 4555555543 5888888
Q ss_pred EECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc---CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE
Q 040533 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS---GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT 324 (364)
Q Consensus 248 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 324 (364)
-.-.+......+..+-.+..+.|+++|..|++++..... .+.+.|.+|. .-|+.+.+++.....|++++|-..|-.
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 766665555566667889999999999999887532211 1223555554 567888888888889999999776655
Q ss_pred EEEEeCCCcEEEEE
Q 040533 325 VVSAAADETLRFWE 338 (364)
Q Consensus 325 l~~~~~dg~i~vw~ 338 (364)
++.+ .|+.|++=+
T Consensus 323 iA~A-vdsfiyfan 335 (1189)
T KOG2041|consen 323 IAIA-VDSFIYFAN 335 (1189)
T ss_pred EEEE-ecceEEEEe
Confidence 5443 344444433
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-11 Score=98.28 Aligned_cols=277 Identities=11% Similarity=0.115 Sum_probs=183.8
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-cEEEEecCCcceeeeeec
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-KLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~ 127 (364)
..++..+..+++.-+.|...+.+...+-..++ +|...|.-..+.-+++-++.|..|| .+-|||..+++.. .+..
T Consensus 325 edfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~ 399 (668)
T COG4946 325 EDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEK 399 (668)
T ss_pred hhhccCCCcEEEEEecCcEEEECCCCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeC
Confidence 33555566778877888999988777654333 6677899999998888999999999 8999999877644 4555
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC----eEEEEeCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN----LVHVWDHS 203 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~ 203 (364)
.-+.|.++..+| +++.++.+.....+.+.|++++.. ...-+...+-|+.+.|||+++++|.+--+| .|+++|+.
T Consensus 400 ~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 400 DLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 678899999999 999999999999999999998874 333445667899999999999999887665 58899987
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCC----CCCeEEEEECCC--CeEEEEEe---------------c-
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT----QDGCIKIWNVQK--GTCIHSVD---------------T- 261 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~----~d~~i~i~d~~~--~~~~~~~~---------------~- 261 (364)
..+ +.......+.=.+-+|.|+++++...+..+ .|..+.=+.... .--+..+. .
T Consensus 478 ~~K----iy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~e 553 (668)
T COG4946 478 GGK----IYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSE 553 (668)
T ss_pred CCe----EEEecCCcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCcc
Confidence 643 333333333345667888887776544211 222222222111 00000000 0
Q ss_pred -------------------CCCeEEEEEcCCccceeeecc--------CCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 262 -------------------KAQICGLEWNRHHKEILSGHG--------FSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 262 -------------------~~~v~~~~~~~~~~~l~~~~~--------~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
++.-.+++-..+++.++.... +......|.+.+||+++.+... -...+.
T Consensus 554 a~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e----~k~nvs 629 (668)
T COG4946 554 AGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE----YKDNVS 629 (668)
T ss_pred ccceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH----Hhcccc
Confidence 011122222233322222110 1123446677777776644321 235688
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
++..|+|+..++. -.||.++.++++.
T Consensus 630 s~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 630 SFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred eEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 9999999999888 8899999999987
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-11 Score=103.88 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=185.9
Q ss_pred eecccCCCc--cEEEEEe-----------CCeEEEEECCCCceeeeeeecCCCCCc-eEEEEcCCCCEEEEEecCCcEEE
Q 040533 48 SNMMDWGRN--NILAIAL-----------GLELYLWKQENGEVQKLLKVTGEDDFP-TSISWSQDAKTLAVGYMASKLQL 113 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i 113 (364)
+.-+++||. .+++.+. ...+.|||+.+|.....+........+ .-..||.|++++|.-.. ..|.|
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisI 330 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISI 330 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEE
Confidence 566788885 3555442 258999999999887666542222222 34689999999998765 46999
Q ss_pred EecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC-----CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE
Q 040533 114 WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD-----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
|+..+..++..-.-.-..|....|+| .+++||-=... ..+.+-.+.+.+. ++...-|+-.=..+.|-.+|.+|
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEE
Confidence 99877555443333456789999999 77777654322 2355555554443 33333444444567788888888
Q ss_pred EEEe----------CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-C---e
Q 040533 189 ASGG----------DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-G---T 254 (364)
Q Consensus 189 ~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~---~ 254 (364)
+.-- .-..+-|+.++....+ +... .-...|...+|-|.|..+.+..+.....++.+|.+.+ . +
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIp--ve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIP--VEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCC--ceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 7532 1124556666654332 2222 2356788999999998777766544567889998873 2 2
Q ss_pred EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec-cccccceeEEeecCCCCEEEEEeC---
Q 040533 255 CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL-QHQTSRILELSQSPDGLTVVSAAA--- 330 (364)
Q Consensus 255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~--- 330 (364)
.+..++. ...+.+.|+|.|++++++.. .+..|.+.++|+........- ..| ...+.+.|.|.|+|+++++.
T Consensus 486 lVk~~dk-~~~N~vfwsPkG~fvvva~l---~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 486 LVKELDK-KFANTVFWSPKGRFVVVAAL---VSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred hhhhhcc-cccceEEEcCCCcEEEEEEe---cccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhh
Confidence 2233322 55788999999999988754 246889999998753222221 223 34578999999999999875
Q ss_pred ---CCcEEEEEeeCCC
Q 040533 331 ---DETLRFWEAFGPS 343 (364)
Q Consensus 331 ---dg~i~vw~~~~~~ 343 (364)
|..-++|++....
T Consensus 561 hk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 561 HKVDNGYRIFTFQGRL 576 (698)
T ss_pred hccccceEEEEeecHH
Confidence 4556788876543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-10 Score=96.69 Aligned_cols=234 Identities=11% Similarity=0.100 Sum_probs=151.7
Q ss_pred eCCeEEEEECCCCceeeeeeecCC-----CCCceEEEEcCCCCEEEEEe-c-CCcEEEEecCCcceeeeeecCCCcEEEE
Q 040533 63 LGLELYLWKQENGEVQKLLKVTGE-----DDFPTSISWSQDAKTLAVGY-M-ASKLQLWDAETSKLIRNLEGHDKRVATA 135 (364)
Q Consensus 63 ~~~~i~iw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 135 (364)
.+..|.+||..+.+....+.+... ......++++|||++|++.. . +..|.+.|+.+++.+.++.-.. ...-.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEE
Confidence 368999999999988766655322 22344789999999998776 3 6899999999999998887422 22222
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceee----eeecccCcEE-EEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCC-
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTS----RINAHTAEVC-GLKWSN-EGNLLASGGDDNLVHVWDHSKMSSS- 208 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~~v~-~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~- 208 (364)
..+. +..+ .-+.||......+........ .+.....++. .-.|.+ +|+++.+..+ |.|.+.|+......
T Consensus 154 ~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~ 229 (352)
T TIGR02658 154 PTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF 229 (352)
T ss_pred EecC-CccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee
Confidence 2322 2222 233455554444333222111 1111001110 003455 7877777666 99999996543211
Q ss_pred -cceEEecc-------cccceeEEEEccCCCcEEEeecC-------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCC
Q 040533 209 -KCLHRFRD-------HRAAVKALAWCPYQFNVLASGGG-------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273 (364)
Q Consensus 209 -~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g-------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~ 273 (364)
.....+.. ..+...-++++|+++.+++...+ ...+.|.++|..+++.+..+.....+..++++|+
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~D 309 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQD 309 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCC
Confidence 11111111 23334459999999888874311 0126899999999999999999999999999999
Q ss_pred cc-ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 274 HK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 274 ~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
++ .|++.. ..++.|.++|..+++.+.++
T Consensus 310 gkp~lyvtn-----~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALS-----TGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEeC-----CCCCcEEEEECcCCeEEeee
Confidence 99 776654 33788999999999999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=109.87 Aligned_cols=186 Identities=17% Similarity=0.232 Sum_probs=149.0
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecC-CCCCceEEEEc------C--------------CCCEEEEEecCCcEEEEec
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTG-EDDFPTSISWS------Q--------------DAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s------~--------------~~~~l~~~~~dg~i~iw~~ 116 (364)
++....||.+++|+...++..+-+.-.. -.+..++..|. | |...++-|...|.|.+|++
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~ 87 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV 87 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence 4455678999999999887654443222 23445555553 2 3346888989999999999
Q ss_pred CCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC
Q 040533 117 ETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 117 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
..++....+. .|.++|.++.++. +-..|.+++.|+.+..|+..... ........+..+.+++.+||+..+++++
T Consensus 88 ~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as-- 163 (541)
T KOG4547|consen 88 AGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS-- 163 (541)
T ss_pred cCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc--
Confidence 9999888776 5899999999988 88899999999999999998665 4677778888899999999999999886
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccC-----CCcEEEeecCCCCCeEEEEECCC
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY-----QFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
+.|++||+++. +.+..|.+|.++|++++|... |.+++.+.. .+.-+.+|-...
T Consensus 164 ~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 67999998775 559999999999999999877 778888765 566677776654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.5e-13 Score=118.93 Aligned_cols=191 Identities=18% Similarity=0.247 Sum_probs=148.8
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCc-----eEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP-----TSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
..+.|-...++.+..++.+.+||...+...... .+.... .-+-++++.-++++|+.-+.|.+|+....+...
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i---~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKI---QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhc---CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 334444456777888999999998877643222 222221 123346677799999999999999987555445
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+.+|.+.+..+.|+- ++.++++.+.|.++++|++++.+......-+|+.+|..+.|.|+ .+++++.|.+.++|+.+
T Consensus 170 ~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 6889999999999999 99999999999999999999888766566789999999999998 89999999999999755
Q ss_pred CCCCCcceEEeccccc-ceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 204 KMSSSKCLHRFRDHRA-AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.. .+..+.+|.. .+..++..+.. .++++++ .|+.+++||+..
T Consensus 247 ~~----~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 247 GT----QLEVYDEHSGKGIWKIAVPIGV-IIKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred cc----eehhhhhhhhcceeEEEEcCCc-eEEEeec--cCcchhhhhhhc
Confidence 32 2446666643 58888888765 6777776 899999999854
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-11 Score=102.05 Aligned_cols=189 Identities=15% Similarity=0.257 Sum_probs=146.4
Q ss_pred CCCCEEEEEecCCcEEEEecCCcceeeeeec---CCCcEEEEEee------c-------------CCCCEEEEeeCCCcE
Q 040533 97 QDAKTLAVGYMASKLQLWDAETSKLIRNLEG---HDKRVATASWN------H-------------WNGHILTSGSQDKSI 154 (364)
Q Consensus 97 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i 154 (364)
|...++|....||.++||+...++....+.. -.+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999887766643 12333444442 1 134578888899999
Q ss_pred EEEEcccCcceeeee--ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 155 INHDVRVSNNVTSRI--NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
.+|++..++. ...+ ..|.+.|+++.++.+-..|.+++.|+.+..|+.... +.+..+...+..+.+++.+||+ .
T Consensus 83 ~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~~~~~~~~~~~~sl~is~D~-~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VIIRIWKEQKPLVSSLCISPDG-K 157 (541)
T ss_pred EEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eeeeeeccCCCccceEEEcCCC-C
Confidence 9999987663 3333 468999999999998889999999999999996653 4577788888889999999998 4
Q ss_pred EEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCC-----ccceeeeccCCccCCCCeEEEeeCCC
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRH-----HKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
+++++ .++|.+||+++++.+..+.++ ++|.++.|-.. |.+++++.. .+..+.+|-...
T Consensus 158 ~l~~a----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-----~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTA----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-----AERGITVWVVEK 221 (541)
T ss_pred EEEec----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc-----cccceeEEEEEc
Confidence 56655 489999999999999999876 77999998877 778777643 255667776543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-11 Score=97.55 Aligned_cols=240 Identities=11% Similarity=0.227 Sum_probs=156.1
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCC---ceeeeeeecCC------------CCCceEEEEcCCCC--EEEEEecC
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENG---EVQKLLKVTGE------------DDFPTSISWSQDAK--TLAVGYMA 108 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~---~~~~~~~~~~~------------~~~v~~~~~s~~~~--~l~~~~~d 108 (364)
+.++.|+- +.+.++..+|.|.++.-... +......++.| ...|..+.|.++++ .++..+.|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 44555543 45666777899999874422 11111222222 35688999998764 45556689
Q ss_pred CcEEEEecCCcceee-----------------------------------e-eecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 109 SKLQLWDAETSKLIR-----------------------------------N-LEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 109 g~i~iw~~~~~~~~~-----------------------------------~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
.+|++|.+....... . -.+|.--|.+++++. +.+.++++. |=
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dL 185 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD-DL 185 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc-ce
Confidence 999999875321100 0 124777889999988 777777764 66
Q ss_pred cEEEEEcccCcceeee--eecc-----cCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCC---cceE---------
Q 040533 153 SIINHDVRVSNNVTSR--INAH-----TAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSS---KCLH--------- 212 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~--~~~~-----~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~--------- 212 (364)
.|.+|+++-..+.... ++.+ ..-|++..|+| ..+.++..+..|+|++.|+|....- ..+.
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 8999998754432221 2222 34578899999 4568888999999999999842110 0000
Q ss_pred -EecccccceeEEEEccCCCcEEEeecCCCC-CeEEEEEC-CCCeEEEEEecCC----------------CeEEEEEcCC
Q 040533 213 -RFRDHRAAVKALAWCPYQFNVLASGGGTQD-GCIKIWNV-QKGTCIHSVDTKA----------------QICGLEWNRH 273 (364)
Q Consensus 213 -~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~-~~~~~~~~~~~~~----------------~v~~~~~~~~ 273 (364)
-+.+--..|..+.|++.|+++++ .| -+|++||+ ...+++.+++.+. .-..++|+.+
T Consensus 266 sffseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11112345788999999977666 44 78999999 4566666665331 1346789999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
+.++++|.- .+..++|+...+
T Consensus 341 ~~~v~TGsy------~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 DSYVMTGSY------NNVFRVFNLARG 361 (433)
T ss_pred cceEecccc------cceEEEecCCCC
Confidence 999998854 888999985443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-10 Score=110.99 Aligned_cols=239 Identities=9% Similarity=0.094 Sum_probs=158.4
Q ss_pred ceEEEEcCC-CCEEEEEecCCcEEEEecCCcceeeeeec-C-------------CCcEEEEEeecCCCCEEEEee-CCCc
Q 040533 90 PTSISWSQD-AKTLAVGYMASKLQLWDAETSKLIRNLEG-H-------------DKRVATASWNHWNGHILTSGS-QDKS 153 (364)
Q Consensus 90 v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~~l~~~~-~dg~ 153 (364)
...++++++ +..+++-+.++.|+++|.. +..+..+.. . -.....+++++ +++.|+++. .++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 346888875 5566666678889999975 444433322 1 12357789988 676555554 4567
Q ss_pred EEEEEcccCcceeeeeecc-----------------cCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 154 IINHDVRVSNNVTSRINAH-----------------TAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
|+++|+.++. +..+.+- -.....++++| ++.++++.+.++.|++||..... +..+.
T Consensus 648 Ir~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~----v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV----TRVFS 721 (1057)
T ss_pred EEEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe----EEEEe
Confidence 9999986543 2222110 11246799999 56666777778899999976532 11111
Q ss_pred c---------------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------------c-----
Q 040533 216 D---------------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------------T----- 261 (364)
Q Consensus 216 ~---------------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------------~----- 261 (364)
+ .-.....++++|++..++++.. .++.|++||+.++....... .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 1 1123567999999977887765 78999999998765321110 0
Q ss_pred ---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-------------ccccceeEEeecCCCCEE
Q 040533 262 ---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-------------HQTSRILELSQSPDGLTV 325 (364)
Q Consensus 262 ---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l 325 (364)
-.....++++++|..+++.. .++.|++||..++....... +.-.....++++++|+.+
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs------~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADS------YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEEC------CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 01245789999998666553 38999999998765543221 112356789999999988
Q ss_pred EEEeCCCcEEEEEeeCCCC
Q 040533 326 VSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 326 ~~~~~dg~i~vw~~~~~~~ 344 (364)
++-+.++.|++||+.+++.
T Consensus 874 VaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECCCCEEEEEECCCCcc
Confidence 8888999999999988764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=96.71 Aligned_cols=232 Identities=17% Similarity=0.214 Sum_probs=152.9
Q ss_pred EEEEEeCCeEEEEECCCCceee-eeeecCCCC---CceEEEEcCCCCEEEEEecCCcEEEEecCCcce--eeeeecCCCc
Q 040533 58 ILAIALGLELYLWKQENGEVQK-LLKVTGEDD---FPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--IRNLEGHDKR 131 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~-~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~ 131 (364)
++-+-..|.|.++.....+... +..+..-.- ...++.|++.+..++++..+|.+.+-+...+.. ++..+.|.-+
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 3444466888888765433211 111111111 245788999999999999999999666555543 3478899999
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee-eeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCc
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS-RINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSK 209 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 209 (364)
.+...|+..+.+++.+|+.|+.+..||++..+..+. ..+.|...|.++.-+| .+.++++|+.|-.|++||.|+.. +
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--k 245 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--K 245 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--C
Confidence 999999987889999999999999999995544333 3567889999998887 67799999999999999998653 3
Q ss_pred ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE-----EEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI-----HSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
++..-. ..+.|+.+.++|.-...+..+. .-+-.+|.+...+... ...+ +++-...-.|......++++..+
T Consensus 246 Pl~~~~-v~GGVWRi~~~p~~~~~lL~~C--Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 246 PLFKAK-VGGGVWRIKHHPEIFHRLLAAC--MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred ccccCc-cccceEEEEecchhhhHHHHHH--HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence 444332 3578999999997643333332 3444677777654322 1111 22334455554444455554322
Q ss_pred CccCCCCeEE-EeeCCC
Q 040533 284 SSSGDGQKLC-LWKYPH 299 (364)
Q Consensus 284 ~~~~~~~~i~-i~d~~~ 299 (364)
|+.++ +|-.-+
T Consensus 323 -----Dk~~~~~Wl~~t 334 (339)
T KOG0280|consen 323 -----DKKIRQLWLHIT 334 (339)
T ss_pred -----ccceeeeeeecc
Confidence 55544 554433
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-12 Score=99.44 Aligned_cols=245 Identities=18% Similarity=0.314 Sum_probs=171.8
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-----eeeeeecCC------------CcEEEEEeec-CCCCEEEE
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-----LIRNLEGHD------------KRVATASWNH-WNGHILTS 147 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~-~~~~~l~~ 147 (364)
..+.|+++.|...|.||++|...|.|.+|.-+... ....++.|. ..|..+.|.. .....++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999865432 223345543 4577788864 23356777
Q ss_pred eeCCCcEEEEEcccCc-------------------c----------------------eee-eeecccCcEEEEEEcCCC
Q 040533 148 GSQDKSIINHDVRVSN-------------------N----------------------VTS-RINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 148 ~~~dg~i~~~d~~~~~-------------------~----------------------~~~-~~~~~~~~v~~~~~~~~~ 185 (364)
.+.|.+|++|.+.... + +.+ ....|..-|++++|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999886431 0 000 114567778899999988
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEecccc-----cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-----
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR-----AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC----- 255 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----- 255 (364)
..++++ .|-.|.+|++......-.+..++.|. .-|++..|+|..-.++.-.+ ..|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhccCch
Confidence 888766 47789999987654433344444443 35788999998766666654 799999999984221
Q ss_pred -EE--EEe---------cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeeeccccc------------
Q 040533 256 -IH--SVD---------TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQHQT------------ 310 (364)
Q Consensus 256 -~~--~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~------------ 310 (364)
+. .+. .-..|..+.|+++|+++++-. -.++++||.+. ..++.++.-|.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------cceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 11 111 114588899999999999864 57899999975 34566654442
Q ss_pred cce---eEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 311 SRI---LELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 311 ~~i---~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
..| ..+.||.|.+.+++|+..+..-++-..
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeeccc
Confidence 222 357889999999999988888887643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-10 Score=89.45 Aligned_cols=228 Identities=12% Similarity=0.142 Sum_probs=155.9
Q ss_pred CCcEEEEecCCc--ce-eeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCcceeee---eecccCcEEE
Q 040533 108 ASKLQLWDAETS--KL-IRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSNNVTSR---INAHTAEVCG 178 (364)
Q Consensus 108 dg~i~iw~~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~---~~~~~~~v~~ 178 (364)
+.-|++|++.+. +. ...+-...+..+-++|+| +.+.|.++-. +|.|..|.++.....+.. ......+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 456999998733 21 112223567788999999 8888888765 467888877753111221 1122334488
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEecccccc----------eeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 179 LKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRDHRAA----------VKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 179 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
+++++++++++++. ..|.|.++-++.............|.+. +....+.|++++++++.- -...|.+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~ 171 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFL 171 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEE
Confidence 99999999988887 4578999998764333333233334444 788999999988888754 3457999
Q ss_pred EECCCCeEEEE----EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeeecccc---------ccce
Q 040533 248 WNVQKGTCIHS----VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQ---------TSRI 313 (364)
Q Consensus 248 ~d~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~---------~~~i 313 (364)
|++..|+.... ++.......|.|+|++++.+.... -+++|.+|..... ..+.+++.+ ....
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E-----L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE-----LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec-----cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 99998765432 344566889999999999887653 4899999998773 344444322 2456
Q ss_pred eEEeecCCCCEEEEEeC-CCcEEEEEeeCCC
Q 040533 314 LELSQSPDGLTVVSAAA-DETLRFWEAFGPS 343 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~ 343 (364)
..|..++||++|+++.. ...|.+|.+....
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 78999999999988743 3467788776543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-10 Score=98.21 Aligned_cols=302 Identities=15% Similarity=0.163 Sum_probs=188.0
Q ss_pred eeecccCCCccE-EEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-----------CCcEEEE
Q 040533 47 YSNMMDWGRNNI-LAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-----------ASKLQLW 114 (364)
Q Consensus 47 ~~~~~~~~~~~~-~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~iw 114 (364)
.-+-+.|||.+. ++.--...|.+|--++-...+.+ .|. .|.-+.|||..+||++=+. ...++||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF---~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF---YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCccHHHHHhc---cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 456688999763 44444568899976554433222 454 4788999999999998542 2569999
Q ss_pred ecCCcceeeeeecCC--CcE-EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE
Q 040533 115 DAETSKLIRNLEGHD--KRV-ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG 191 (364)
Q Consensus 115 ~~~~~~~~~~~~~~~--~~v-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (364)
|+.+|...+.+.... ..+ .-..||. +++++|.-..+ .|.||+..+-. ++..-.-.-..|....|+|.+++||.=
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~-sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGN-SISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred EccccchhcceeccCCCccccceEEecc-CCceeEEeccc-eEEEEecCcee-eecccccCCccccCcccCCCcceEEEE
Confidence 999999988877532 222 2367898 89999887764 68899866432 122222234678899999998888764
Q ss_pred eCC-----CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec-------CCCCCeEEEEECCCC-eEEEE
Q 040533 192 GDD-----NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG-------GTQDGCIKIWNVQKG-TCIHS 258 (364)
Q Consensus 192 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------g~~d~~i~i~d~~~~-~~~~~ 258 (364)
... ..+.+..+..... +++-.-++-.=..+-|-.+|.+|.+-.. ++.-..+.|+.++.. -++..
T Consensus 365 tpe~~~~parvtL~evPs~~~---iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKRE---IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred cccccCCcceEEEEecCccce---eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 422 3455555544322 3333223222234556666655544221 001234566666553 34566
Q ss_pred EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC----CceeeeccccccceeEEeecCCCCEEEEE---eCC
Q 040533 259 VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH----MTKWGELQHQTSRILELSQSPDGLTVVSA---AAD 331 (364)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~---~~d 331 (364)
++....+...+|-|.|..+++-++- ....++.+|.+.+ .+.+..+.. ...+.+.|+|.|++++.+ |..
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~---~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~ 516 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGN---TVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRR 516 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEcc---ccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccc
Confidence 6777889999999999988765431 2267788998873 233334432 456789999999998876 457
Q ss_pred CcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 332 ETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|.+.++|+.-......-.......+.+.|.|.
T Consensus 517 g~l~F~D~~~a~~k~~~~~eh~~at~veWDPt 548 (698)
T KOG2314|consen 517 GDLEFYDTDYADLKDTASPEHFAATEVEWDPT 548 (698)
T ss_pred cceEEEecchhhhhhccCccccccccceECCC
Confidence 89999998842222211111223455566553
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-10 Score=97.43 Aligned_cols=268 Identities=11% Similarity=0.038 Sum_probs=164.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEE-
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT- 134 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~- 134 (364)
+.+++++.++.|+.+|..+|+..-...+... ....+.. ++..+++++.+|.+..+|.++|+.+....... .+.+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~ 140 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP 140 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence 4577777889999999999986544433221 1112222 46778888899999999999999887665332 2222
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE-----EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV-----CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 209 (364)
... .+..++.++.+|.+..+|.++++.... ........ .+... .+..++.+..++.+..+|.+++..
T Consensus 141 p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~-~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~-- 212 (377)
T TIGR03300 141 PLV---ANGLVVVRTNDGRLTALDAATGERLWT-YSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP-- 212 (377)
T ss_pred CEE---ECCEEEEECCCCeEEEEEcCCCceeeE-EccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE--
Confidence 222 345677778899999999988764332 21111111 01111 124677788889999999876542
Q ss_pred ceEEeccc-c-c-----c---e-eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcccee
Q 040533 210 CLHRFRDH-R-A-----A---V-KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 210 ~~~~~~~~-~-~-----~---v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 278 (364)
+...... . + . + ....+. +..++++. .+|.+..+|..+++.+....... ...... .+..++
T Consensus 213 -~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~--~~~~vy 283 (377)
T TIGR03300 213 -LWEQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVS---YQGRVAALDLRSGRVLWKRDASS-YQGPAV--DDNRLY 283 (377)
T ss_pred -eeeeccccCCCCCchhhhhccCCccEEE--CCEEEEEE---cCCEEEEEECCCCcEEEeeccCC-ccCceE--eCCEEE
Confidence 2211100 0 0 0 0 111111 23455543 68999999999998877665322 112222 344555
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCC
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD 353 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 353 (364)
++. .++.+..+|..+++.+.+.... ......... .+..|++++.+|.|+++|..+++.+..+..+..
T Consensus 284 v~~------~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 284 VTD------ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred EEC------CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 443 3899999999999887665321 112222222 466899999999999999999988777765443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-10 Score=106.21 Aligned_cols=284 Identities=17% Similarity=0.229 Sum_probs=174.6
Q ss_pred eecccCCCc--cEEEEEeCCeEEEE----ECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC----
Q 040533 48 SNMMDWGRN--NILAIALGLELYLW----KQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE---- 117 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~---- 117 (364)
+..+.+-++ .++.+..+|.|.+. +..+......-.+ ...|.+++||||+..|+..+.+|++.+.+..
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI 154 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence 455555443 47777789999999 6655554433333 6689999999999999999999998887531
Q ss_pred -----------C--------cceeeeeec------------------------CCCcEEEEEeecCCCCEEEEeeC---C
Q 040533 118 -----------T--------SKLIRNLEG------------------------HDKRVATASWNHWNGHILTSGSQ---D 151 (364)
Q Consensus 118 -----------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~---d 151 (364)
. |+.-..|++ +...-..++|-. ||.++|+.+. .
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~ 233 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPET 233 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCC
Confidence 0 111111111 222445788988 9999998874 2
Q ss_pred ---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCCcceEEecccccceeEEE
Q 040533 152 ---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD---DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225 (364)
Q Consensus 152 ---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 225 (364)
..++||+-+ +. +......-.+--.+++|.|.|+++|+.-. ...|.+|.-+....++....+......|..+.
T Consensus 234 ~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 234 GSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred CceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEE
Confidence 468889854 22 22222222333457899999999998764 35677787544333333333334566799999
Q ss_pred EccCCCcEEEeecCCCCCeEEEEECCCCeE--EEEEe--cCCCeEEEEEcCCccc-eeeecc----------CC------
Q 040533 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTC--IHSVD--TKAQICGLEWNRHHKE-ILSGHG----------FS------ 284 (364)
Q Consensus 226 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~--~~~~v~~~~~~~~~~~-l~~~~~----------~~------ 284 (364)
|++++. +|+..- ...|.+|-..+..- .+.+. ....+..+.|+|...+ |..... +.
T Consensus 312 Wn~ds~-iLAv~~---~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~ 387 (928)
T PF04762_consen 312 WNSDSE-ILAVWL---EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG 387 (928)
T ss_pred ECCCCC-EEEEEe---cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC
Confidence 999995 555442 44599999988643 22232 2344556999986544 222211 00
Q ss_pred -ccCCCCeEEEeeCCCCc-----------ee--eeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 285 -SSGDGQKLCLWKYPHMT-----------KW--GELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 285 -~~~~~~~i~i~d~~~~~-----------~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
...+.+.+.+-|-.+-. ++ .++ .-..+|.+++|++++..+++-..||.|.+|.....
T Consensus 388 ~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 388 SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 00122333333322110 00 011 12467999999999988999999999999996543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-10 Score=95.95 Aligned_cols=262 Identities=11% Similarity=0.115 Sum_probs=170.5
Q ss_pred ccCCCc-cEEEEEeCCeEEEEECCCCcee--eeeeecCCCCCceEEEEcCCC--CEEEE-----EecCCcEEEEecCCcc
Q 040533 51 MDWGRN-NILAIALGLELYLWKQENGEVQ--KLLKVTGEDDFPTSISWSQDA--KTLAV-----GYMASKLQLWDAETSK 120 (364)
Q Consensus 51 ~~~~~~-~~~~~~~~~~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~iw~~~~~~ 120 (364)
+.|+-+ .++|--....++|+++ ++... ....+. ...|....|+|.+ ..||. ....+.++||.+..+.
T Consensus 137 ~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 137 LKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred eeeeecchhhhhhccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence 445543 3333335578889886 33321 111111 3568888999964 34444 3467889999998777
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEee-----------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGS-----------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
.+.+..-..-.-..+.|++ .+++|++-- .+..+.++++......+ .....++|..++|.|.++.++
T Consensus 214 ~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~~pVhdf~W~p~S~~F~ 290 (561)
T COG5354 214 VLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLKDPVHDFTWEPLSSRFA 290 (561)
T ss_pred eeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccccce--eccccccceeeeecccCCcee
Confidence 6655433333334678888 777665421 12457888887444222 225678999999999888766
Q ss_pred EEe--CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEE
Q 040533 190 SGG--DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICG 267 (364)
Q Consensus 190 ~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~ 267 (364)
+.+ .+..+.++|++.. .... .....=..+.|+|.++++++.|-+...|.+.+||.........--......-
T Consensus 291 vi~g~~pa~~s~~~lr~N----l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~ 364 (561)
T COG5354 291 VISGYMPASVSVFDLRGN----LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSY 364 (561)
T ss_pred EEecccccceeecccccc----eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceE
Confidence 654 6788999998753 2222 2344556788999998888887766789999999877655442223344566
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
+.|+|+++++.+...-..-..|+.+.|||+...... ..+.+.|.|.|++.-+.+.+.
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 789999999988754333345899999998654322 456677777777766665544
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=123.91 Aligned_cols=193 Identities=17% Similarity=0.275 Sum_probs=150.8
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+..+.-+| ...++++.||.+++|....++.+......+. ..|+.+.|+.+|+.+..+..||.+.+|... .+.....
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence 44455555 3589999999999999988887666665555 899999999999999999999999999976 5666677
Q ss_pred ecCCCcEEEEEeecCCCCEEEEee---CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGS---QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
+.|+.....+.|- +..+++++ .++.+.+||..........-..|.+.++++++-|...+|++|+.+|.|++||+
T Consensus 2289 qchnk~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred ccCCccccceeee---ehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 7899999999994 36666654 56789999975443323333789999999999999999999999999999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
+..+ .++.++. ++ .+..+++++ ..|.++||++..-..+.++..
T Consensus 2366 rqrq---l~h~~~~---------~~--~~~~f~~~s--s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2366 RQRQ---LRHTFQA---------LD--TREYFVTGS--SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHHH---HHHHhhh---------hh--hhheeeccC--cccceEEEEccccchhhcCch
Confidence 7643 3444432 33 346777765 899999999988766666543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-09 Score=94.32 Aligned_cols=237 Identities=10% Similarity=0.001 Sum_probs=141.5
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCE-EEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHI-LTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
.|.+-|.+... .+.+.... ......|+| +++. ++..+.+ ..|.++|+.+++. ..+....+......|+|||
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 56666654333 34343333 778899999 7773 5544433 4688899877653 3333355556678899999
Q ss_pred CEEEEEe-CC--CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC
Q 040533 186 NLLASGG-DD--NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 186 ~~l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 262 (364)
+.++... .+ ..|.++|+..+. ...+..+........|+|+|+.++.+........|.+.|+.+++..+.....
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKT----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCc----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 8766543 23 468888876543 3333333333445689999988888764112236888899887764443322
Q ss_pred CCeEEEEEcCCccceeeeccCCccC---CCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC-Cc--EEE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSG---DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD-ET--LRF 336 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~--i~v 336 (364)
.. ...|+|+|+.++......... ....|.+.|+.++... .+... .......|+|||+.|+..+.+ +. +.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 22 358999999988765311000 1147889998877643 33322 223468999999987766543 33 556
Q ss_pred EEeeCCCCCcceeccCCceeeeee
Q 040533 337 WEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 337 w~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
.++.... ...+....+.+..-+|
T Consensus 397 ~~l~g~~-~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 397 IRLNYNK-SFLFPLKVGKIQSIDW 419 (419)
T ss_pred EecCCCe-eEEeecCCCccCCCCC
Confidence 6664432 3334333444544433
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-09 Score=84.07 Aligned_cols=236 Identities=15% Similarity=0.186 Sum_probs=139.3
Q ss_pred EEEcCCCCEEEEEecCCcEEEEecCCc--ceeeee---ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 93 ISWSQDAKTLAVGYMASKLQLWDAETS--KLIRNL---EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 93 ~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
++.+.+|+.||+- .|..|.|-..++. ..+.+. +.....=+.++|+| ++.+||.+...|+|+++|+..... ..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EE
Confidence 5678899988887 5778888766543 122222 22334467899999 999999999999999999974331 11
Q ss_pred ee------ecccCcEEEEEEcCCC------CEEEEEeCCCeEEEEeCCC--CCCCcceEEecc---cccceeEEEEccCC
Q 040533 168 RI------NAHTAEVCGLKWSNEG------NLLASGGDDNLVHVWDHSK--MSSSKCLHRFRD---HRAAVKALAWCPYQ 230 (364)
Q Consensus 168 ~~------~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~---~~~~v~~~~~~~~~ 230 (364)
.- ......|..|.|.+.. ..|++-..+|.++-|-+.. .+..+..+.+.- +...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 11 1123567777776522 2566666788887776532 222333333322 36689999999988
Q ss_pred CcEEEeecCCCCCe----------EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 231 FNVLASGGGTQDGC----------IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 231 ~~~~~~~~g~~d~~----------i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
+ +|..|| ..... +..|.+-++.+-.. ...+-+...-.. ...-.+|.+.+.
T Consensus 160 ~-LLlVgG-~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk---------~v~~~~~~~~~~---------~~~~~~~~~~~~ 219 (282)
T PF15492_consen 160 R-LLLVGG-CEQNQDGMSKASSCGLTAWRILSDSPYYK---------QVTSSEDDITAS---------SKRRGLLRIPSF 219 (282)
T ss_pred C-EEEEec-cCCCCCccccccccCceEEEEcCCCCcEE---------EccccCcccccc---------ccccceeeccce
Confidence 5 544543 23321 22222222211111 000111110000 112233333332
Q ss_pred ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc
Q 040533 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 301 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
+...........|..|..||||..||+...+|.|.+|++.+-+.......+
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 222222234567999999999999999999999999999998877766543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=120.28 Aligned_cols=198 Identities=16% Similarity=0.246 Sum_probs=160.0
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
.+-..|.++.=+| ...+.++|+.||.+++|....++++...-..-+..|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2206 ~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--- 2281 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--- 2281 (2439)
T ss_pred cccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC---
Confidence 3556788888888 888899999999999999988877555444555889999999999999999999999999876
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEee-cCCCCCeEEEEECCCC---eEEEEEecCCCeEEEEEcCCccceeeecc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASG-GGTQDGCIKIWNVQKG---TCIHSVDTKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
+++....+.|+.....+.|-. .+++++ ..+.++.+.+||.... ..+. .-+.+.++++++.|..+.+++|+.
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence 456777888988888888876 344444 3446788999997542 2333 345678999999999999999854
Q ss_pred CCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+|.|++||++..+.+..++. +. ...++++|+..|.++||++.....+..+.
T Consensus 2357 ------~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 ------KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ------cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999998888777664 44 55689999999999999999988777765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-10 Score=93.64 Aligned_cols=216 Identities=13% Similarity=0.119 Sum_probs=155.9
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeee---ec---CCC---CCceEEE-EcC-CCCEEEEEecCCcEEEEecCCcceeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLK---VT---GED---DFPTSIS-WSQ-DAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~---~~---~~~---~~v~~~~-~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
...+.....|.|++||..+..+.++-. +. ... .+..-+. |++ +|++++..+ .|...|.+...+-.++.
T Consensus 278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv 356 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQV 356 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEc
Confidence 457777888999999998876543321 00 000 1111111 333 688888886 68899988776655443
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCC-cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDK-SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
++...|.-..+.- +++-++.|..|| .+-++|.++++ .+.+...-+.|.++..+++|++++.+.....+.+.|+.
T Consensus 357 --~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 --GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred --CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 4667788888877 677899999999 89999998765 55666777889999999999999999988999999998
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEee-cCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeee
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG-GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
++.. ...-+...+-|+.+.|+|+++.+..+- .|.....|+++|+.+++........+.-.+-+|.|++++|.--
T Consensus 432 ngnv---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 432 NGNV---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CCCe---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 8653 222234567799999999996554432 1234567999999998887766666666778899999987643
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-10 Score=85.48 Aligned_cols=263 Identities=12% Similarity=0.031 Sum_probs=167.5
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-----CCCEEEEEecCCcEEEEecCCccee-eeeecCCCcEEE
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-----DAKTLAVGYMASKLQLWDAETSKLI-RNLEGHDKRVAT 134 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~ 134 (364)
......+.+|+..+... .+.++. +.+.|-| ...+||.|+..|...+|...+.+.. +....|...|+-
T Consensus 48 i~~t~sv~i~~~y~N~~-~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~ 120 (344)
T KOG4532|consen 48 ISKTISVPINSHYSNPK-GIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL 120 (344)
T ss_pred ccceeeeEeccccCCch-hhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhh
Confidence 33445677888766541 111111 2344544 4468999999999999998865433 333334444433
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA--EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
+.-..+....+..++.|.++++.+++.+.. ... .|.. .+.+++++++++++++.+....|..|.+..........
T Consensus 121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~-~~~--~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~ 197 (344)
T KOG4532|consen 121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSN-KFA--VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI 197 (344)
T ss_pred hhhhcccccceeeccCCcceeEEEEecCcc-cce--eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee
Confidence 222221344567788889999988875442 111 2333 38899999999999999999999999987654322222
Q ss_pred EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE-E-----ecCCCeEEEEEcCCccc--eeeeccCC
Q 040533 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS-V-----DTKAQICGLEWNRHHKE--ILSGHGFS 284 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~--l~~~~~~~ 284 (364)
......+.-.+..|+... ..+|++. +||++.|||++....... . .+.+.+..+.|++.|.. |+..
T Consensus 198 ~~a~t~D~gF~~S~s~~~-~~FAv~~--Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s---- 270 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSEND-LQFAVVF--QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS---- 270 (344)
T ss_pred EecccCCCceeeeeccCc-ceEEEEe--cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe----
Confidence 333344445677888776 5677766 999999999987543322 1 24477999999986653 3333
Q ss_pred ccCCCCeEEEeeCCCCceeeecc-------ccc-cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQ-------HQT-SRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~-------~~~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
..-+.+.+.|++++.....+. .|. +.|..-.|+.++..+.+.+++ .+.=|++.+..
T Consensus 271 --Ehfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 271 --EHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred --cCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 226789999999876554432 222 347888888888777766654 34556655443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-09 Score=91.82 Aligned_cols=215 Identities=10% Similarity=0.043 Sum_probs=134.3
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCE-EEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecC
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKT-LAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 140 (364)
..|.+-|........+.. + .......|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|
T Consensus 169 ~~l~~~d~dg~~~~~~~~--~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP- 242 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK--G--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK- 242 (419)
T ss_pred ceEEEECCCCCceeEEcc--C--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-
Confidence 367777776554332222 2 36778999999985 6654433 469999998886554433 555667788999
Q ss_pred CCCEEE-EeeCC--CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCCCcceEEe
Q 040533 141 NGHILT-SGSQD--KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-N--LVHVWDHSKMSSSKCLHRF 214 (364)
Q Consensus 141 ~~~~l~-~~~~d--g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~ 214 (364)
+++.++ +.+.+ ..|.++|+.++. ...+..+........|+|||+.|+..+.. + .|++.|+..+.. ..+
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----~rl 316 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----EQV 316 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----EeC
Confidence 776554 44444 467777876554 33333333333456899999877776632 3 677888765432 122
Q ss_pred cccccceeEEEEccCCCcEEEeecCCCC--------CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 215 RDHRAAVKALAWCPYQFNVLASGGGTQD--------GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 215 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d--------~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
..... ....|+|+|+.++.+.. .. ..|.+.|+.++... .+..........|+|+|+.++.... .
T Consensus 317 t~~g~--~~~~~SPDG~~Ia~~~~--~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~---~ 388 (419)
T PRK04043 317 VFHGK--NNSSVSTYKNYIVYSSR--ETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKY---L 388 (419)
T ss_pred ccCCC--cCceECCCCCEEEEEEc--CCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEc---c
Confidence 11111 12489999998888764 22 47889999887653 3333334446899999998876542 1
Q ss_pred CCCCeEEEeeCCC
Q 040533 287 GDGQKLCLWKYPH 299 (364)
Q Consensus 287 ~~~~~i~i~d~~~ 299 (364)
+....+.+.++..
T Consensus 389 ~~~~~L~~~~l~g 401 (419)
T PRK04043 389 GNQSALGIIRLNY 401 (419)
T ss_pred CCcEEEEEEecCC
Confidence 2234566777644
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-10 Score=85.37 Aligned_cols=217 Identities=8% Similarity=0.040 Sum_probs=142.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
+++++..|...+|...+.+. .......|...|+-+.=..+ .-.+..++.|.++++.+++-+..........-.+.+++
T Consensus 87 la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH 165 (344)
T ss_pred EEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence 44555789999999987664 22233344443332211111 12456677888899888875543333222223388999
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceeee--eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcc--eE
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC--LH 212 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~ 212 (364)
+++ ++.++++.+....|..|.+......... ....++.-.+..|+.....+|++..||++.|||+|....... ..
T Consensus 166 ~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 166 YSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 999 9999999999999999998766543332 223344557889999999999999999999999997644211 11
Q ss_pred EecccccceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecC---------CCeEEEEEcCCccceee
Q 040533 213 RFRDHRAAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---------AQICGLEWNRHHKEILS 279 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~ 279 (364)
+-..|++.++.+.|++.|. .++.+- .-+.+.+.|+++++..+.+... ..+..-.|+.++..+.+
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence 2234889999999998664 344443 4678999999998766555322 12555566655555444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-09 Score=94.33 Aligned_cols=254 Identities=12% Similarity=0.044 Sum_probs=153.3
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceE-EEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE-
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTS-ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA- 133 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~- 133 (364)
+.+++++.++.++.+|..+|+..-...+. ..+.+ ... .+..++.++.+|.|..||.++|+.+..+........
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLS---SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccC---ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 34666677899999999998864433322 22211 111 345677778899999999999998877654332211
Q ss_pred ----EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC------cEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 040533 134 ----TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA------EVCGLKWSN--EGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 134 ----~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~~~~~d~~i~iwd 201 (364)
+... .+..++.+..+|.+..+|+++++.....-..... ....+.-+| .+..++.++.+|.++.+|
T Consensus 181 ~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1122 2346778888899999999877643221111000 000011111 245788888899999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCC-CeEEEEEcCCccceee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKA-QICGLEWNRHHKEILS 279 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~-~v~~~~~~~~~~~l~~ 279 (364)
..+++ .+.... . ........ .+..+++.. .+|.+..+|..+++.+.... ... ....... .+..+++
T Consensus 258 ~~tG~---~~W~~~-~-~~~~~p~~--~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~ 325 (377)
T TIGR03300 258 LRSGR---VLWKRD-A-SSYQGPAV--DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV 325 (377)
T ss_pred CCCCc---EEEeec-c-CCccCceE--eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE
Confidence 87653 233322 1 11122222 233555543 69999999999998876552 222 1222222 2445555
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeecccccccee-EEeecCCCCEEEEEeCCCcEEEE
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL-ELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
+. .+|.++++|..+++.+.+++.+...+. +..+. ++ .|+.++.||.|+.|
T Consensus 326 ~~------~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 GD------FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred Ee------CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 53 399999999999999988876654332 22332 33 58889999998776
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-09 Score=80.93 Aligned_cols=235 Identities=11% Similarity=0.092 Sum_probs=139.8
Q ss_pred ccEEEEEeCCeEEEEECCCCc--eeeeeeec-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec-----
Q 040533 56 NNILAIALGLELYLWKQENGE--VQKLLKVT-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG----- 127 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~--~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----- 127 (364)
++++|+-.|..|.|-..++.= .....+.+ .....=..++||||+.+||.+...|+|++||+... .+..+..
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~ 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFP 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccC
Confidence 568999999999888766532 11222222 22334578999999999999999999999998743 3333332
Q ss_pred --CCCcEEEEEeecCC-----CCEEEEeeCCCcEEEEEcccC--cce--ee--eee-cccCcEEEEEEcCCCCEEEEEeC
Q 040533 128 --HDKRVATASWNHWN-----GHILTSGSQDKSIINHDVRVS--NNV--TS--RIN-AHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 128 --~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~~--~~~--~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
-...|..+.|.+.. ...|++-..+|.++-|-+..+ +.. .. .+. .+...|.++.++|..++|++|+.
T Consensus 88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 23567777775422 235666777888887776432 111 11 122 24678999999999898888875
Q ss_pred CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC------eEEEEECCCCeEEE-EEecCCCeE
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG------CIKIWNVQKGTCIH-SVDTKAQIC 266 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~------~i~i~d~~~~~~~~-~~~~~~~v~ 266 (364)
... +... -++....+++-..-.+.++..-+.. ..|+ +..+|.+-+.+... .......|.
T Consensus 168 ~~~------~~~~-------s~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~ 233 (282)
T PF15492_consen 168 EQN------QDGM-------SKASSCGLTAWRILSDSPYYKQVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF 233 (282)
T ss_pred CCC------CCcc-------ccccccCceEEEEcCCCCcEEEccc-cCccccccccccceeeccceeeeeccccCCCceE
Confidence 432 0000 0011112222222222222221111 0111 12334333322211 122356799
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS 311 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 311 (364)
.|..||+|..|++.+. +|.|.+|++++.++..+..-++.
T Consensus 234 kmSlSPdg~~La~ih~------sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 234 KMSLSPDGSLLACIHF------SGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred EEEECCCCCEEEEEEc------CCeEEEEecCcchhhcccchhhC
Confidence 9999999999999876 99999999999888777664443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-08 Score=96.67 Aligned_cols=242 Identities=16% Similarity=0.295 Sum_probs=150.6
Q ss_pred CceEEEEcCCCCEEEEEec---C---CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEc
Q 040533 89 FPTSISWSQDAKTLAVGYM---A---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDV 159 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~---d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~ 159 (364)
.-..++|-.||.++|+.+. . ..++||+-+ |....+-+.-.+--.+++|.| .|+++|+.-. ...|.+|.-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 4567899999999998874 3 469999965 665544443334445789999 9999998865 234556653
Q ss_pred ccCcc--eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccCCCcEEEe
Q 040533 160 RVSNN--VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 160 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+.-+. ....+......|..+.|++++..||....|. |.+|-..+-.. -.-+.+. .....+..+.|+|.....+..
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW-YLKqei~~~~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW-YLKQEIRFSSSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE-EEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence 32111 1111223456799999999999999987665 99998665321 1111111 122334558999987765555
Q ss_pred ecCCCCCeEEEEECC----C----------------CeE----------------EEEEecCCCeEEEEEcCCccceeee
Q 040533 237 GGGTQDGCIKIWNVQ----K----------------GTC----------------IHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~----~----------------~~~----------------~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
.. .+|.+..++.. . |.. ...+....+|..++|++++..+++-
T Consensus 367 ~t--~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 367 LT--SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred Ee--cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence 44 44555544431 1 111 1222345679999999998766655
Q ss_pred ccCCccCCCCeEEEeeCCCCcee--------eecc----------ccccceeEEeecCCCCEEEEEeCC---CcEEEEEe
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKW--------GELQ----------HQTSRILELSQSPDGLTVVSAAAD---ETLRFWEA 339 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~--------~~~~----------~~~~~i~~i~~~~~~~~l~~~~~d---g~i~vw~~ 339 (364)
.. +|.|.+|........ ..+. .....+..++|..+..+++....+ ..+.++++
T Consensus 445 ~~------d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 445 TS------DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred EC------CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 43 999999985443211 1111 123457888888887766666554 67888887
Q ss_pred eCC
Q 040533 340 FGP 342 (364)
Q Consensus 340 ~~~ 342 (364)
...
T Consensus 519 ~~~ 521 (928)
T PF04762_consen 519 DDS 521 (928)
T ss_pred ccC
Confidence 543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-08 Score=79.58 Aligned_cols=218 Identities=14% Similarity=0.137 Sum_probs=143.2
Q ss_pred EEEEcC-CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee
Q 040533 92 SISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN 170 (364)
Q Consensus 92 ~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 170 (364)
+++|.+ ++.++++-...+.|..|+..+++... +.... ...+++...+ ..|+.+... .+.++|+.+++. .....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEE-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcE-EEEee
Confidence 678988 66666776678999999998776533 33222 6777777315 445555554 455568877642 22222
Q ss_pred c-----ccCcEEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 171 A-----HTAEVCGLKWSNEGNLLASGGDD--------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 171 ~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
. .....+.+++.|+|++.++.... |.|..++.. .. +......-...+.++|+|+++.++++-
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----EEEEecCcccccceEECCcchheeecc
Confidence 1 34568899999999977776543 557777754 21 233333345568999999998888776
Q ss_pred cCCCCCeEEEEECCCC-e-E--EEEE-e--cC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 238 GGTQDGCIKIWNVQKG-T-C--IHSV-D--TK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~-~-~--~~~~-~--~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
+ ..+.|..+++... . . ...+ . .. +..-.+++..+|+..++... .+.|.+++.. ++.+..+...
T Consensus 153 s--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 153 S--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp T--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETT-SCEEEEEE-S
T ss_pred c--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCC-ccEEEEEcCC
Confidence 5 7889999998532 1 1 1222 2 22 24788999999998877544 8999999977 8888887766
Q ss_pred ccceeEEeec-CCCCEEEEEe
Q 040533 310 TSRILELSQS-PDGLTVVSAA 329 (364)
Q Consensus 310 ~~~i~~i~~~-~~~~~l~~~~ 329 (364)
...+++++|. ++.+.|+..+
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEe
Confidence 5689999994 6666665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-08 Score=98.14 Aligned_cols=229 Identities=10% Similarity=0.086 Sum_probs=144.8
Q ss_pred EeCCeEEEEECCCCceeeeeeec-----------CCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecC-
Q 040533 62 ALGLELYLWKQENGEVQKLLKVT-----------GEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGH- 128 (364)
Q Consensus 62 ~~~~~i~iw~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~- 128 (364)
..++.|+++|.........-... ..-.....+++.++++.|+++. .++.|+++|..++. +.++.+.
T Consensus 587 s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G 665 (1057)
T PLN02919 587 SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNG 665 (1057)
T ss_pred CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccC
Confidence 35678999997654322111100 0123468899999888766654 45779999987754 3333110
Q ss_pred ----------------CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec---------------ccCcEE
Q 040533 129 ----------------DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA---------------HTAEVC 177 (364)
Q Consensus 129 ----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---------------~~~~v~ 177 (364)
-..-..++++|.++.++++.+.++.|++||..++.. ..+.+ .-....
T Consensus 666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~ 743 (1057)
T PLN02919 666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPS 743 (1057)
T ss_pred cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCcc
Confidence 112357899985566777777888999999876532 11111 112356
Q ss_pred EEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCCcc----------eEEecc--------cccceeEEEEccCCCcEEEeec
Q 040533 178 GLKWSNEGNLL-ASGGDDNLVHVWDHSKMSSSKC----------LHRFRD--------HRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 178 ~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~----------~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
.++++|+++.| ++-+.++.|++||+.+...... ...+.. .-.....++++++|. ++++..
T Consensus 744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs 822 (1057)
T PLN02919 744 GISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS 822 (1057)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC
Confidence 79999998844 4555678999999875431000 000000 011245889999984 666654
Q ss_pred CCCCCeEEEEECCCCeEEEEEecC--------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTK--------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
.++.|++||..++......... .....++++++|+.+++.. .++.|++||+.+++.
T Consensus 823 --~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt------~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 823 --YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT------NNSLIRYLDLNKGEA 892 (1057)
T ss_pred --CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC------CCCEEEEEECCCCcc
Confidence 7899999999887665433211 2467899999998666553 389999999988764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-11 Score=101.31 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=158.6
Q ss_pred eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-------cceeeeeecCCCcEEEEEeecCCCCEEEEeeC
Q 040533 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150 (364)
Q Consensus 78 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 150 (364)
..+..+.+|...|..++--.+.+.+++++.|.+|++|.++. ..+..+++.|+.+|..+-|-. +.+.+++ .
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--c 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--C 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--c
Confidence 34556679999999888777888899999999999999863 235667889999999999987 6666665 4
Q ss_pred CCcEEEEEcccCcceeeeeec----ccCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCCCcceEEe--cccccceeE
Q 040533 151 DKSIINHDVRVSNNVTSRINA----HTAEVCGLKWSNEGNLLAS-GGDDNLVHVWDHSKMSSSKCLHRF--RDHRAAVKA 223 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~ 223 (364)
||.|.+||.--+..+...... ..+.|.++. +-+...+.. ++...+|+++|.+..+.....+.. .+.+..+++
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 789999998766543322211 123344432 113344444 478899999998875442222222 234567899
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEE-eeCCCCc
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL-WKYPHMT 301 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i-~d~~~~~ 301 (364)
++..|.|+.+.+.- ..|.|.+.|.++|+.+.....- .....++ .|..+.++.... |..+.+ |..-++.
T Consensus 882 iaVa~~GN~lAa~L---SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal------dHslaVnWhaldgi 951 (1034)
T KOG4190|consen 882 IAVADKGNKLAAAL---SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL------DHSLAVNWHALDGI 951 (1034)
T ss_pred EEeccCcchhhHHh---cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc------cceeEeeehhcCCe
Confidence 99999996655533 6999999999999988765321 1222222 244455554432 777777 8766665
Q ss_pred eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 302 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
...+.+....+..-+ ..-|..|+++...+.+.+|.
T Consensus 952 mh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 952 MHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred eeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 555544333322211 12355677777666777774
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-09 Score=86.66 Aligned_cols=251 Identities=14% Similarity=0.207 Sum_probs=175.8
Q ss_pred eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec-CCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA-ETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 78 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
..+..++||.+.+++...-|...-+++.+.|.+++||-- +.++.-..+. ....+++++.+.+ +...|++|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEE
Confidence 334556699999999999888888999999999999963 3444433332 3457889999999 889999999999998
Q ss_pred EEEcccC---cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 156 NHDVRVS---NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 156 ~~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
-+.+... ....+....|...+..+-|+...+++++.+.|..+.---.+.+.. +-.+.- ...-.++.+.-.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~---lg~Y~~-~~~~t~~~~d~~--- 166 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR---LGGYNF-ETPASALQFDAL--- 166 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc---ccceEe-eccCCCCceeeE---
Confidence 8866432 223455668999999999999888999999887665333222211 111000 001111111111
Q ss_pred EEEeecCCCCCeEEEEECCC--CeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeeccc
Q 040533 233 VLASGGGTQDGCIKIWNVQK--GTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQH 308 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~ 308 (364)
.... |...|.|..-.+.. -.++..+.. ...+.+++|.+....++++.. |..+.+||+.-.+- ..++.+
T Consensus 167 ~~fv--Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~------d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 167 YAFV--GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS------DHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred EEEe--cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc------cCceEEEeccCCcceeeeecc
Confidence 1122 33556665554432 344555543 478999999999999998855 99999999976543 456788
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
|...|..+..-+--+.|++++.||.|.+|+++....
T Consensus 239 h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 239 HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred chhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 999999999888888999999999999999876543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=94.66 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=119.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 176 VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS-SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 176 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
...+..++.++++|++..+....+++++.... .+.+.... -...-+++.|..+....++.-.......+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34556778888999998888877777765432 12222221 22233455555555455554321255667777766677
Q ss_pred EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCCc
Q 040533 255 CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
+...+.+-+-+..++|+||+++++++.. |..|++-..+....+..+- +|..-|..++.-++ ..|+++|.|++
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDR------DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADR------DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecC------CceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc
Confidence 7777777788999999999999999865 9999998888777666654 69999999998765 46899999999
Q ss_pred EEEEEeeCCCCCccee
Q 040533 334 LRFWEAFGPSGSGDFV 349 (364)
Q Consensus 334 i~vw~~~~~~~~~~~~ 349 (364)
|++||+.+++.+.++.
T Consensus 217 lr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCD 232 (390)
T ss_pred EEEEecccCCcccccc
Confidence 9999999999987654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-10 Score=91.94 Aligned_cols=261 Identities=12% Similarity=0.141 Sum_probs=164.2
Q ss_pred EEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE
Q 040533 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL 145 (364)
Q Consensus 67 i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 145 (364)
+++.+..+.+..+ -++++...|.+++|||..+ ++..++.+.+|.|.|+++...+..+..+ ..+++++|.-++.+++
T Consensus 175 v~~l~~~~fkssq--~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ--ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhh--cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 5555554444333 4558889999999999776 7888889999999999999999888877 7899999998778899
Q ss_pred EEeeCCCcEEEEEcccCcceeeeeec--ccCcEEEEEEc------CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc
Q 040533 146 TSGSQDKSIINHDVRVSNNVTSRINA--HTAEVCGLKWS------NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 146 ~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~v~~~~~~------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
.+|..+|.|.+||++..+.....+.+ ...+|..++.- +.+.+|+....+ +..|++.......+...-.+.
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~ 329 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP 329 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence 99999999999999987654443333 22344444332 234455544433 566765533221111111234
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCC------eEE-EEECCCCeEEEEEec---CCC------eEEEEEcCCccceeeec
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDG------CIK-IWNVQKGTCIHSVDT---KAQ------ICGLEWNRHHKEILSGH 281 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~------~i~-i~d~~~~~~~~~~~~---~~~------v~~~~~~~~~~~l~~~~ 281 (364)
.+...+++.++-.+.++++.- .+. .+- --|..+|.++..... ++. -..+.-.++..+++..
T Consensus 330 pG~cismqy~~~snh~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~- 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV- 406 (463)
T ss_pred CcceeeeeecCccceEEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe-
Confidence 566778888887778888763 210 111 112233433322211 111 1112223344444432
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-CC-CEEEEEeCCCcEEEEEeeC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-DG-LTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~-~~l~~~~~dg~i~vw~~~~ 341 (364)
+++.+.+.+||..+++.+..+.-. .+|.+++... +| .+|++- .|..++||..++
T Consensus 407 ----gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 407 ----GDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred ----cCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 245789999999999999988754 7788877654 33 355554 456788887553
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=102.14 Aligned_cols=207 Identities=14% Similarity=0.252 Sum_probs=149.2
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc------ceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
+..+.+|...|..++--. +.+-+++++.|.+|++|.++... ....++..|+.+|.++.|-.+.++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456778999998887766 88899999999999999987543 1345678899999999999988888765 78
Q ss_pred eEEEEeCCCCCCCcceEEec--ccccceeEEEEccC-CCcEEEeecCCCCCeEEEEECCCCeEEEEEec------CCCeE
Q 040533 196 LVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPY-QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT------KAQIC 266 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------~~~v~ 266 (364)
-|.+||.-.+ +++.... ...+.+..+..-|+ .+.++..+ .+...+|+++|.+.++-...++. ...+.
T Consensus 805 giHlWDPFig---r~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIG---RLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeeccccc---chhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 8999995332 2222111 12233334444344 33455444 24789999999999876655542 14488
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE-EEeeCC
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF-WEAFGP 342 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v-w~~~~~ 342 (364)
+++..+.|+.++++-. +|+|.+.|.++|+.+..++...-....++- |..+.|+....|.++.+ |....+
T Consensus 881 ~iaVa~~GN~lAa~LS------nGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALS------NGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred EEEeccCcchhhHHhc------CCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC
Confidence 9999999999998865 999999999999999887766555555543 55567777777777777 765443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-11 Score=110.02 Aligned_cols=218 Identities=16% Similarity=0.256 Sum_probs=156.3
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC--cEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK--SIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d 158 (364)
..+..|....+|++|+-+.+.|+.|+..|.|++|++.+|.......+|..+|+.+.=+. ++..+++.+.-. -..+|+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhc
Confidence 34557888999999999999999999999999999999999999999999999999888 777666554333 467899
Q ss_pred cccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE-ec---ccccceeEEEEccCCCcEE
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR-FR---DHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~---~~~~~v~~~~~~~~~~~~~ 234 (364)
+.+.......+ ..-.++.|+.....-+.|.......+||+.+... +.+ +. +....-.+..|+|.. .++
T Consensus 1174 ~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~---l~tylt~~~~~~y~~n~a~FsP~D-~LI 1245 (1516)
T KOG1832|consen 1174 ASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSP---LQTYLTDTVTSSYSNNLAHFSPCD-TLI 1245 (1516)
T ss_pred cccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcH---HHHhcCcchhhhhhccccccCCCc-ceE
Confidence 87644333333 2345788887554445555556789999887543 332 11 122233678899988 455
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
. .|| .+||.+..+.++.+..-..-..-.|+|.|..++..+ .|||+++.+.+.....-.. .
T Consensus 1246 l-----ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----------EIwD~RTF~lLh~VP~Ldq--c 1305 (1516)
T KOG1832|consen 1246 L-----NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----------EIWDMRTFKLLHSVPSLDQ--C 1305 (1516)
T ss_pred e-----eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----------hhhhhHHHHHHhcCccccc--e
Confidence 5 466 589999887777765433333447899999888743 4899999888877654332 4
Q ss_pred EEeecCCCCEEEE
Q 040533 315 ELSQSPDGLTVVS 327 (364)
Q Consensus 315 ~i~~~~~~~~l~~ 327 (364)
.+.|+..|..++.
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6778887776554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-09 Score=91.19 Aligned_cols=240 Identities=13% Similarity=0.195 Sum_probs=169.7
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCC-----------CCEEEEeeCCCcEEE
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWN-----------GHILTSGSQDKSIIN 156 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~~~~~dg~i~~ 156 (364)
..-.++.|+|.| ++|.|+ ...|.+-|..+-+.++.++.|...|+.+.|.|.. .-+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 335688899877 678876 4579999999999999999999999999998721 236788888999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcC---CC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSN---EG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
||...... ...+..|..++..++|-+ +. ..|+.-.....+.+|+..+++. ..+.........|+.+.|.+..
T Consensus 94 ~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 94 VDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred EEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eeccccCCcceeeeeeCCCCcc
Confidence 99987664 556778889999999976 33 4666667778999999777543 5555544556777999987654
Q ss_pred EEEeecCCCCCeEEEEECCC-------CeEEEEEecCC------------------C--------eEEEEEcCCccceee
Q 040533 233 VLASGGGTQDGCIKIWNVQK-------GTCIHSVDTKA------------------Q--------ICGLEWNRHHKEILS 279 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~-------~~~~~~~~~~~------------------~--------v~~~~~~~~~~~l~~ 279 (364)
-+..-+ ..|.+.+-+.-. ++..+.-..++ + ...++|+|.-+.++.
T Consensus 170 h~~~l~--s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 170 HFCVLG--SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred eEEEEc--cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 444433 477777766532 22222211100 0 113456775443332
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC--CEEEEEeCCCcEEEEEeeC
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG--LTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~vw~~~~ 341 (364)
..- ...+.++|++-..++....-..+.+.-+.+-|++ ..|++.-.||.+.+|--+.
T Consensus 248 i~~------prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 248 ITF------PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEe------ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 211 7889999999888888877666666667777765 4799999999999998765
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-10 Score=86.77 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=100.8
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeec-CCCCCceEEEEcCCCCEEEEEe-----cCCcEEEEecCCcceeeeeecCC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVT-GEDDFPTSISWSQDAKTLAVGY-----MASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
.+++.+..||.+.+++.+.-.. ...+.. .|.+ -.+.+....++.+.++. .-+..++|+++..+....-....
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~-~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLA-LMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CceEecCCCceEEEEechHHHh-hhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 4677788899999998765211 111111 1111 12233333555555543 12345566655433322222223
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
..|.+++-+|...+++++|+.||.+-+||.+....+...+..|+.+++.+.|+| ++..|+++++||.+..||...
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 459999999977788899999999999999988777788889999999999999 677999999999999999663
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.1e-08 Score=78.74 Aligned_cols=213 Identities=11% Similarity=0.088 Sum_probs=139.8
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
++.|.+.++.++++--..+.|..|+..++.... +... . ...+++. +++ .++.+...+ +.++|..+.+. +.+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~-~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~-~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLP-G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKV-TVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESS-S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEE-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecC-C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcE-EEEe
Confidence 568887566777777778999999988665322 2222 2 6777888 565 555555554 55668776532 2233
Q ss_pred Eec--c-cccceeEEEEccCCCcEEEeecCCCC------CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccC
Q 040533 213 RFR--D-HRAAVKALAWCPYQFNVLASGGGTQD------GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 213 ~~~--~-~~~~v~~~~~~~~~~~~~~~~~g~~d------~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
... . .....+.+++.|+|. +.++..+... |.|..++.. ++.......-...+.++|+|+++.|+...
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~d-- 152 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVAD-- 152 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEE--
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecc--
Confidence 321 1 345678999999996 5554331111 668888887 66555555556688999999999887654
Q ss_pred CccCCCCeEEEeeCCCCce-------eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCcee
Q 040533 284 SSSGDGQKLCLWKYPHMTK-------WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLL 356 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~-------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~ 356 (364)
+..+.|..+++..... ...+....+..-.+++.++|++.++.-..+.|.+++.. ++.+..+......++
T Consensus 153 ---s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t 228 (246)
T PF08450_consen 153 ---SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPT 228 (246)
T ss_dssp ---TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEE
T ss_pred ---cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEE
Confidence 3378899999853222 12222222347789999999988888888999999977 777777766556899
Q ss_pred eeeec
Q 040533 357 SLKVS 361 (364)
Q Consensus 357 ~~~~s 361 (364)
+++|.
T Consensus 229 ~~~fg 233 (246)
T PF08450_consen 229 NCAFG 233 (246)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99994
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.3e-10 Score=89.98 Aligned_cols=163 Identities=15% Similarity=0.228 Sum_probs=111.7
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcce---eeeeecCCCcEEEEEeecCCCCEEEEeeCCC---cEEEEEcccC
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKL---IRNLEGHDKRVATASWNHWNGHILTSGSQDK---SIINHDVRVS 162 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~ 162 (364)
.+..+..++.+++||++..+....++++..... ......-...-+++.|.. +......+..-| .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence 344566788899999998888877777654432 111111233344555554 444444444444 4445554432
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
......+|-..+..++|+||+++++++..|..|++-....... +..+ .+|...|..++.-++ +.|++++ -
T Consensus 143 --~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~---IesfclGH~eFVS~isl~~~--~~LlS~s--G 213 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV---IESFCLGHKEFVSTISLTDN--YLLLSGS--G 213 (390)
T ss_pred --CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc---hhhhccccHhheeeeeeccC--ceeeecC--C
Confidence 2445668999999999999999999999999999977654322 3333 469999999999886 4566665 4
Q ss_pred CCeEEEEECCCCeEEEEEec
Q 040533 242 DGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~ 261 (364)
|++|++||+.+|+.+.++..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-08 Score=85.67 Aligned_cols=275 Identities=8% Similarity=-0.033 Sum_probs=157.2
Q ss_pred CccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCce-----EEEEcC--CCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 55 RNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPT-----SISWSQ--DAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~-----~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
.+.+++.+.++.+.-+|.++|+..=...+........ .+.-.| ++..++.++.+|.+.-+|.++|+.+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 3456777778999999999988644333322110000 000011 355677888899999999999998877664
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN--EGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.......... .+..++.+..++.+..+|.++++.................-+| .+..++.++.++.+..+|..++
T Consensus 149 ~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 149 AGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred CCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence 3322222222 3456677788899999999888754332211100000000112 1235667778899998887765
Q ss_pred CCCcceEEecc--cc--c---ceeEEEEcc--CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccc
Q 040533 206 SSSKCLHRFRD--HR--A---AVKALAWCP--YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKE 276 (364)
Q Consensus 206 ~~~~~~~~~~~--~~--~---~v~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~ 276 (364)
+. +..... .. . ....+.-+| .+..+++.+ .+|.+..+|..+|+.+........ ..+.. .+..
T Consensus 226 ~~---~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~-~~~~~--~~~~ 296 (394)
T PRK11138 226 QL---IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSV-NDFAV--DGGR 296 (394)
T ss_pred hh---hheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCc-cCcEE--ECCE
Confidence 43 221110 00 0 000111111 133455543 589999999999988766543221 11222 2333
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccc-cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
++.+ +.++.+..+|..+++.+.....-. ....+... .+.+|+.++.||.|.+.|..+++.+....
T Consensus 297 vy~~------~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 297 IYLV------DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred EEEE------cCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 4443 338999999999988765443211 11222222 24578889999999999999988766554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-09 Score=94.33 Aligned_cols=296 Identities=16% Similarity=0.230 Sum_probs=172.7
Q ss_pred eeecccCCCc-cEEEEEe-----CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 47 YSNMMDWGRN-NILAIAL-----GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~-----~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
..+..+|+|. -+++++. .|.|.||- ++|++..-.+.+- .+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 3566789995 4666553 58898884 5666544444433 36779999998889999999999999988877
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee-eeeeccc--C--cEEEEEEcCCCC------EEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT-SRINAHT--A--EVCGLKWSNEGN------LLA 189 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~--~--~v~~~~~~~~~~------~l~ 189 (364)
.......|..+|..+.|+| +|..++++..-|.+.+|.....+... ..+..|. . ...|...++++. ..+
T Consensus 93 ~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaa 171 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAA 171 (1416)
T ss_pred eeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhh
Confidence 7777778999999999999 99999999999999999877433211 1111222 1 234455566532 233
Q ss_pred EEeCCCeEE-EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC----
Q 040533 190 SGGDDNLVH-VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ---- 264 (364)
Q Consensus 190 ~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~---- 264 (364)
+.+++..+- .++.+.... .... .+. =.|+|..+++++ .+|+|+..|- +|++....+.++.
T Consensus 172 VtgDe~alD~~fnwk~~~a---~rs~-~ks-------gv~~g~~F~~~~---~~GtVyyvdq-~g~~~~V~k~dS~vQmL 236 (1416)
T KOG3617|consen 172 VTGDESALDEPFNWKESLA---ERSD-EKS-------GVPKGTEFLFAG---KSGTVYYVDQ-NGRQRTVHKLDSEVQML 236 (1416)
T ss_pred ccCchhhhcccccCccchh---hccc-ccc-------CCCCCcEEEEEc---CCceEEEEcC-CCcEEEEEEccchHHHH
Confidence 444444332 333221100 0000 111 135665555554 7999988884 4555555444332
Q ss_pred -------eEEE-EEcCCccceeeeccC-----------CccCCCCeEEEeeCCCCceeee---c-cccccceeEEeecCC
Q 040533 265 -------ICGL-EWNRHHKEILSGHGF-----------SSSGDGQKLCLWKYPHMTKWGE---L-QHQTSRILELSQSPD 321 (364)
Q Consensus 265 -------v~~~-~~~~~~~~l~~~~~~-----------~~~~~~~~i~i~d~~~~~~~~~---~-~~~~~~i~~i~~~~~ 321 (364)
+..+ .+..+.-+++-..+. -.++..|.|..=... | .+.. + ......+++++++..
T Consensus 237 f~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-G-vLr~~eKyg~e~ge~~~c~cY~~~ 314 (1416)
T KOG3617|consen 237 FMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-G-VLRKSEKYGLELGEGILCMCYGEK 314 (1416)
T ss_pred HhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-c-cccCCcchhhhcCCceEEEEEecc
Confidence 1111 111111111111000 011222222221111 1 1100 0 012356899999999
Q ss_pred CCEEEEEeCCCcEEEEEeeCCCCC-------ccee---ccCCceeeeeeccCC
Q 040533 322 GLTVVSAAADETLRFWEAFGPSGS-------GDFV---SHLDGLLSLKVSPIR 364 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~~~-------~~~~---~~~~~v~~~~~sp~~ 364 (364)
+..|+.|...|.+.+|.-.....+ ..+. ...+.|+.+.|+|++
T Consensus 315 ~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k 367 (1416)
T KOG3617|consen 315 EIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIK 367 (1416)
T ss_pred ceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecccc
Confidence 999999999999999974433221 1222 336679999999964
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=96.03 Aligned_cols=206 Identities=17% Similarity=0.302 Sum_probs=150.4
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-cccCcEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEG--NLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+++.++..+| .++-++.++.-| +.+.|+.........+. ...-.|....|+|.. .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 45678889999 888888887766 45566665443333221 112346677888743 24444444556678998877
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.....-..+.+|...|+.+.|+|+.+.++++++ .|-.+..||+++.. ++.... -+.....+.|+-....+++..
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-- 177 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-- 177 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc--
Confidence 666666777889999999999999999999987 89999999999853 344433 246677889987666555543
Q ss_pred CccCCCCeEEEeeCCCC-ceeeeccccccceeEEeecCC-CCEEEEEeCCCcEEEEEeeCCCC
Q 040533 284 SSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQSPD-GLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
..+.|.+||.+.+ .++..+++|...|..++|..- ...+.+.+.||+|++||......
T Consensus 178 ----hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 178 ----HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred ----cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 3889999999765 567788889999999998763 34688899999999999886554
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-09 Score=85.43 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=178.5
Q ss_pred ccEEEEEeCCeEEEEECCC-CceeeeeeecCCCCCceEEEEcCCCCEEEEEec-CCcEEEEecCCcceeeeeecCCCcEE
Q 040533 56 NNILAIALGLELYLWKQEN-GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-ASKLQLWDAETSKLIRNLEGHDKRVA 133 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~ 133 (364)
+-++.++.||.++.|.-.. .-..-+..+..|-..|.+++.+-++..+.+.+. |..++++|+++-..+.-++.-. .-.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg 99 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPG 99 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-CCC
Confidence 4578899999999998665 222333444578889999999999999999777 9999999998766553333111 111
Q ss_pred EEEeecCCC---CEEE-EeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-CC
Q 040533 134 TASWNHWNG---HILT-SGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM-SS 207 (364)
Q Consensus 134 ~~~~~~~~~---~~l~-~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~ 207 (364)
.+.|....+ ..++ +.-.+|.+.++|-....+ ....-.-|..+|.++.+++.+..+++....|.|.-|..... +.
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 223322123 1333 334678999999776553 23344468999999999999999999999999999987631 00
Q ss_pred --C---------cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------------
Q 040533 208 --S---------KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------------- 262 (364)
Q Consensus 208 --~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------------- 262 (364)
. .-+..+........++.|+|++..+-..+ .|..|++++.++|+.++.++..
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccC---cccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 0 01112222345678999999996555443 7999999999998766554210
Q ss_pred --------------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-------------
Q 040533 263 --------------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ------------- 309 (364)
Q Consensus 263 --------------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------------- 309 (364)
..-+.+.|...|++|+-+. --.|++.++.+++..+.+-..
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t-------~~gikvin~~tn~v~ri~gk~e~ir~~~~sl~q~ 329 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT-------ILGIKVINLDTNTVVRILGKDEAIRFTRLSLYQG 329 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec-------ceeEEEEEeecCeEEEEeccchhhhhhhHHHHhh
Confidence 1234577888888888765 345778888777665543211
Q ss_pred --------------ccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 310 --------------TSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 310 --------------~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
.++ .+.+.+|-.+++++-....++++
T Consensus 330 ~~k~~~~~~~~~a~~np--~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 330 AQKSNLAALEVAASNNP--LLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhccchhhhhhhccCc--ccccCCCCeEEEeeeecceEEEE
Confidence 111 22355666677777777778777
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-09 Score=81.46 Aligned_cols=153 Identities=16% Similarity=0.322 Sum_probs=99.5
Q ss_pred EEcCCCCEEEEEecCCcEEEEecCCccee-eeeecCCCcEEEEEeecCCCCEEEEeeC-----CCcEEEEEcccCcceee
Q 040533 94 SWSQDAKTLAVGYMASKLQLWDAETSKLI-RNLEGHDKRVATASWNHWNGHILTSGSQ-----DKSIINHDVRVSNNVTS 167 (364)
Q Consensus 94 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~ 167 (364)
+.+-.++.++++..||.+.+++.+.-..+ ..+..-...-.+.+... .++.+.++.- -+..+.|+++....+..
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred cccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeecccccccccc
Confidence 33445678999999999999997652111 11111111111122222 3444444321 23456677664443322
Q ss_pred eeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 168 RINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
.... ...|.+++-+| +.+.+++|+.||.+.+||.++.. .+...+..|..+++.+-|+|..+.-|.+++ +||.+.
T Consensus 175 ~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s--edGslw 249 (319)
T KOG4714|consen 175 SKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--MPVSLLKAHKAEIWEVHFHPKNPEHLFTCS--EDGSLW 249 (319)
T ss_pred cccc-cccchhhhCCcccccEEEEecCCCeEEEEEccccc--chHHHHHHhhhhhhheeccCCCchheeEec--CCCcEE
Confidence 2222 23489999999 55688889999999999999863 456677889999999999998777666665 899999
Q ss_pred EEECCC
Q 040533 247 IWNVQK 252 (364)
Q Consensus 247 i~d~~~ 252 (364)
-||..+
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 999865
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-07 Score=81.16 Aligned_cols=256 Identities=11% Similarity=0.017 Sum_probs=149.2
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceE-EEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE--
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTS-ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV-- 132 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v-- 132 (364)
+.+++++.++.++.+|.++|+..=...+.+ .+.+ ... .+..+++++.+|.+.-+|.++|+.+..+.......
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 346666678899999999998644443322 1111 111 24467777789999999999999887765321111
Q ss_pred ---EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc---C---cEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 040533 133 ---ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT---A---EVCGLKWSN--EGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 133 ---~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~---~v~~~~~~~--~~~~l~~~~~d~~i~iwd 201 (364)
.+... .+..++.++.+|.+..+|..+++.....-.... . ....+.-+| .+..++.++.+|.+..+|
T Consensus 196 ~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 196 RGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred cCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 11111 233566677889999899887764322110000 0 011111222 245677777899999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILS 279 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~ 279 (364)
..+++. +-+.. ......+.. .+..+++.. .+|.+..+|..+++.+..... .....+... .+..++.
T Consensus 273 ~~tG~~---~W~~~--~~~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v 340 (394)
T PRK11138 273 LRSGQI---VWKRE--YGSVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVV 340 (394)
T ss_pred CCCCCE---EEeec--CCCccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEE
Confidence 876532 32221 111112222 233555543 689999999999987654432 111222222 1334444
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeecccccccee-EEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL-ELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+. .+|.+...|..+++.+.+.+.....+. ...+ .+..|+.++.||.|+.++.
T Consensus 341 ~~------~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 341 GD------SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred Ee------CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 43 389999999999998887654333232 2222 2447888999999988764
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=87.52 Aligned_cols=162 Identities=15% Similarity=0.241 Sum_probs=119.2
Q ss_pred EEcCC--CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---eeee
Q 040533 94 SWSQD--AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN---VTSR 168 (364)
Q Consensus 94 ~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~ 168 (364)
+|+-+ |-. ++.+.+..|-+-|+++|... .+. ..+.|.++.|.. .++++..|..+|.|..+|++.+.+ ....
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 56542 223 33345667888888877532 333 567899999987 899999999999999999987621 1223
Q ss_pred eecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEE--EEccCCCcEEEeecCCCCCeE
Q 040533 169 INAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL--AWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~d~~i 245 (364)
.-.|...|+++..-. ++.+|++.+.+|+|.+||++..+..+.+..+.+|-..-.-+ -..+.. .+++++| .|-..
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~G--dDcyt 370 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVG--DDCYT 370 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEcc--CeeEE
Confidence 336889999988776 77899999999999999999877666688888885433322 234444 4555565 89999
Q ss_pred EEEECCCCeEEEEEecC
Q 040533 246 KIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~ 262 (364)
+||.++.+..+.+++..
T Consensus 371 RiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEecccCceeeccCCC
Confidence 99999999999888654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-07 Score=73.42 Aligned_cols=220 Identities=14% Similarity=0.082 Sum_probs=134.1
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCC
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH 143 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (364)
++.|..||..+++..-...+........+. ..+++..+++++.++.|..||..+|+.+..+.. ...+..... . .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-ccc
Confidence 678999999998876555542211222211 233566788888999999999999998887764 222222111 2 556
Q ss_pred EEEEeeCCCcEEEEEcccCcceeeeeeccc---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccc
Q 040533 144 ILTSGSQDKSIINHDVRVSNNVTSRINAHT---AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA 220 (364)
Q Consensus 144 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 220 (364)
.++.++.++.+..+|..+++.......... ...........+..++.+..++.|..+|.++++ .+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~---~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK---LLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE---EEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc---EEEEeecCCCC
Confidence 667777888999999888886544222211 111222222237788888889999999987754 34444332211
Q ss_pred ----------e-eEEEEccCCCcEEEeecCCCCCe-EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCC
Q 040533 221 ----------V-KALAWCPYQFNVLASGGGTQDGC-IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 221 ----------v-~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
+ ..+.+. ++ .++++. .++. +.+ |+.+++.+.... ......+ ....+..++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~------ 220 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSS------ 220 (238)
T ss_dssp SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEET------
T ss_pred CCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeC------
Confidence 1 222233 34 566654 4665 555 999999775433 3333332 3456666666533
Q ss_pred CCeEEEeeCCCCceee
Q 040533 289 GQKLCLWKYPHMTKWG 304 (364)
Q Consensus 289 ~~~i~i~d~~~~~~~~ 304 (364)
++.|..||+.+++.+.
T Consensus 221 ~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 221 DGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEe
Confidence 8999999999998764
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-06 Score=70.93 Aligned_cols=223 Identities=15% Similarity=0.186 Sum_probs=144.1
Q ss_pred cccCCCc--cEEEEEe--CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-----cCCcEEEEecC-Cc
Q 040533 50 MMDWGRN--NILAIAL--GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-----MASKLQLWDAE-TS 119 (364)
Q Consensus 50 ~~~~~~~--~~~~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~-~~ 119 (364)
.++.+|. ..++.+. .....+||..+++....+......-.--.-.||+||++|++.- ..|.|-|||.. +.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 3455552 3555553 3578999999998766554322111222457999999998853 35789999998 66
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeC------------------CCcEEEEEcccCcceee-ee--ecccCcEEE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQ------------------DKSIINHDVRVSNNVTS-RI--NAHTAEVCG 178 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------dg~i~~~d~~~~~~~~~-~~--~~~~~~v~~ 178 (364)
+.+.++..|.-.-..+.+.| +++.|+++.- +-.+...|..+++.+.+ .+ ..|...|..
T Consensus 89 ~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 77888888887788899999 8877776521 12344455555553222 23 336678999
Q ss_pred EEEcCCCCEEEEEeCCC-------eEEEEeCCCCCCCcceE----EecccccceeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 179 LKWSNEGNLLASGGDDN-------LVHVWDHSKMSSSKCLH----RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 179 ~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
+++.++|..++..-..| -|.+++.... ...+. ....-.+.+-+|++++++..+++|+- .-+.+.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~ 243 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAV 243 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEE
Confidence 99999986555443332 1333432211 00000 01123567899999999987888876 8899999
Q ss_pred EECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 248 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
||..+++.+..... ..+..++..+++ ++++
T Consensus 244 ~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 244 WDAATGRLLGSVPL-PDACGVAPTDDG-FLVS 273 (305)
T ss_pred EECCCCCEeecccc-CceeeeeecCCc-eEEe
Confidence 99999998876543 446777777777 4444
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.3e-09 Score=82.70 Aligned_cols=205 Identities=15% Similarity=0.280 Sum_probs=135.7
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc----ceeeeeeccc------------CcEEEEEEcCCC--CEEE
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN----NVTSRINAHT------------AEVCGLKWSNEG--NLLA 189 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~------------~~v~~~~~~~~~--~~l~ 189 (364)
....|+++.|.. .|.+|++|...|.|.+|.-+... .....+++|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345789999988 89999999999999999754332 1222344553 347778887644 3667
Q ss_pred EEeCCCeEEEEeCCCCCC----------------C-----------------------cceE-EecccccceeEEEEccC
Q 040533 190 SGGDDNLVHVWDHSKMSS----------------S-----------------------KCLH-RFRDHRAAVKALAWCPY 229 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~----------------~-----------------------~~~~-~~~~~~~~v~~~~~~~~ 229 (364)
..+.|.+|++|.+..... + .+.+ .-..|.--+.+++|+.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 777899999999865310 0 0000 01246667889999988
Q ss_pred CCcEEEeecCCCCCeEEEEECCCCeE---EEEEecC------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 230 QFNVLASGGGTQDGCIKIWNVQKGTC---IHSVDTK------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 230 ~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
...++. + .|=.|.+|++.--.. +..++.+ .-|++..|+|....++.- ++..|.|++-|++..
T Consensus 184 ~et~lS-a---DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY-----SsSkG~Ikl~DlRq~ 254 (460)
T COG5170 184 KETLLS-A---DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY-----SSSKGEIKLNDLRQS 254 (460)
T ss_pred hheeee-c---cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE-----ecCCCcEEehhhhhh
Confidence 755544 3 588999999875322 1222222 237888999976655432 244899999999732
Q ss_pred c------eeeec----------cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 301 T------KWGEL----------QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 301 ~------~~~~~----------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
. .+.+. ..-...|..+.|+++|+++++-+. -+|++||+...+
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 1 11111 122356889999999999998765 589999998654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-08 Score=82.75 Aligned_cols=250 Identities=11% Similarity=0.076 Sum_probs=170.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--c-ceeeeeecCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--S-KLIRNLEGHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVR 160 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~ 160 (364)
-|.+.|+.+.-. -.+++.+++.||.++.|.-.. + +.+..+..|...+.+++.+. ++.++.+.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEee
Confidence 577777776554 467999999999999997543 1 34455667888888998888 8999999777 9999999998
Q ss_pred cCcce-eeeeecccCcEEEEEEcCC-C-CEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 161 VSNNV-TSRINAHTAEVCGLKWSNE-G-NLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 161 ~~~~~-~~~~~~~~~~v~~~~~~~~-~-~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+-... ...+....+.+..+ .++. - ..++++ -.++.+.++|-..... +....-.-|..+|..+.+++.+...+.
T Consensus 85 n~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vS- 161 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVS- 161 (558)
T ss_pred ccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCceEEEEeeccccceee-
Confidence 66532 11222223333322 2221 1 133333 3678999999664332 333444568999999999998855444
Q ss_pred ecCCCCCeEEEEECCC------CeEEEEE----------ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 237 GGGTQDGCIKIWNVQK------GTCIHSV----------DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~------~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
.. ..|.|..|.... .+....+ +......++.|+|++..+..-. .|..|++++..++
T Consensus 162 iD--~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~------~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 162 ID--ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN------PDRKVRGFVFKTG 233 (558)
T ss_pred cc--ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC------cccEEEEEEeccc
Confidence 32 679999998872 1121122 2335678999999999987764 4999999999988
Q ss_pred ceeeecc--------------------------------ccc-cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcc
Q 040533 301 TKWGELQ--------------------------------HQT-SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD 347 (364)
Q Consensus 301 ~~~~~~~--------------------------------~~~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 347 (364)
+.++.+. .|. ..-+.+.|...|++|+-|+-=| |++.++.+++..+.
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 7665443 111 1235678888999999887654 78999988776544
Q ss_pred e
Q 040533 348 F 348 (364)
Q Consensus 348 ~ 348 (364)
+
T Consensus 313 ~ 313 (558)
T KOG0882|consen 313 L 313 (558)
T ss_pred e
Confidence 3
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-06 Score=74.97 Aligned_cols=256 Identities=17% Similarity=0.184 Sum_probs=144.6
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC---------------
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH--------------- 128 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------------- 128 (364)
.+.+.++|+++++..++... ...+....|||+|+.+|... ++.|.+++..++...+.....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 46899999999887655542 56788999999999999985 789999998877544322111
Q ss_pred --CCcEEEEEeecCCCCEEEEeeCC-Cc-----------------------------------EEEEEcccCccee-eee
Q 040533 129 --DKRVATASWNHWNGHILTSGSQD-KS-----------------------------------IINHDVRVSNNVT-SRI 169 (364)
Q Consensus 129 --~~~v~~~~~~~~~~~~l~~~~~d-g~-----------------------------------i~~~d~~~~~~~~-~~~ 169 (364)
-+.-..+-|+| +++.|+....| .. +.++|+.+++... ...
T Consensus 98 Ev~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~ 176 (353)
T PF00930_consen 98 EVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP 176 (353)
T ss_dssp HTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---
T ss_pred cccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec
Confidence 11234678999 88887765332 11 3344554443211 111
Q ss_pred ---ecccCcEEEEEEcCCCCEEEEE--eCC---CeEEEEeCCCCCCCcceEEecccccce---eEEEEc-cCCCcEEEee
Q 040533 170 ---NAHTAEVCGLKWSNEGNLLASG--GDD---NLVHVWDHSKMSSSKCLHRFRDHRAAV---KALAWC-PYQFNVLASG 237 (364)
Q Consensus 170 ---~~~~~~v~~~~~~~~~~~l~~~--~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~ 237 (364)
......+..+.|.++++.|+.. ..+ ..+.++|..++.. +.+.. ......| ....|. +++..++...
T Consensus 177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s 254 (353)
T PF00930_consen 177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-RVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWIS 254 (353)
T ss_dssp HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-EEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEE
T ss_pred cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-eEEEE-ecCCcceeeecccccccCCCCEEEEEE
Confidence 1234567889999988834433 332 2466677665433 22221 1122332 245554 6666666665
Q ss_pred cCCCCC--eEEEEECCCCeEEEEEecCCCeE-EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 238 GGTQDG--CIKIWNVQKGTCIHSVDTKAQIC-GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 238 ~g~~d~--~i~i~d~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
. .+| .|.+++...+.......+.-.|. -+.++++++.++....- .......++.-++..+..+..+......-.
T Consensus 255 ~--~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~-~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~ 331 (353)
T PF00930_consen 255 E--RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANG-DNPGERHLYRVSLDSGGEPKCLTCEDGDHY 331 (353)
T ss_dssp E--TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESS-GGTTSBEEEEEETTETTEEEESSTTSSTTE
T ss_pred E--cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecC-CCCCceEEEEEEeCCCCCeEeccCCCCCce
Confidence 4 555 46666766666443223444564 47888887766533211 112345677777773444455543333326
Q ss_pred EEeecCCCCEEEEEe
Q 040533 315 ELSQSPDGLTVVSAA 329 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~ 329 (364)
.+.|||+|++++...
T Consensus 332 ~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 332 SASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEE-TTSSEEEEEE
T ss_pred EEEECCCCCEEEEEE
Confidence 899999999876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-07 Score=74.06 Aligned_cols=215 Identities=13% Similarity=0.053 Sum_probs=128.7
Q ss_pred CCcEEEEecCCcceeeeeecC--CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 108 ASKLQLWDAETSKLIRNLEGH--DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
+|.|..||..+|+.+...... .....+. ..+ ++..+++++.++.+..||..+++.....- . ..++.... ...+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~-~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVP-DGGRVYVASGDGNLYALDAKTGKVLWRFD-L-PGPISGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEE-ETTEEEEEETTSEEEEEETTTSEEEEEEE-C-SSCGGSGE-EEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEE-eCCEEEEEcCCCEEEEEECCCCCEEEEee-c-ccccccee-eecc
Confidence 689999999999998877531 1222211 222 56677777899999999998887533322 1 11111111 1234
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccc---cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHR---AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
..+++++.++.++.+|..+++. +... .... ...........+..+++.. .++.|..+|+++|+.+.....
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKV---LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCE---EEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEES
T ss_pred cccccccceeeeEecccCCcce---eeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeec
Confidence 5677777888999999777643 4442 2111 1111122222243455543 589999999999999888765
Q ss_pred CCCe------------EEEEEcCCccceeeeccCCccCCCCe-EEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE
Q 040533 262 KAQI------------CGLEWNRHHKEILSGHGFSSSGDGQK-LCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 262 ~~~v------------~~~~~~~~~~~l~~~~~~~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 328 (364)
..+- ..+.+. ++ .++.+.. ++. +.+ |..+++.+.+.. ...+..+ ...++..|+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~------~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~ 218 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVIS-DG-RVYVSSG------DGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVT 218 (238)
T ss_dssp STT-SS--EEEETTEEEEEECC-TT-EEEEECC------TSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEE
T ss_pred CCCCCCcceeeecccccceEEE-CC-EEEEEcC------CCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEE
Confidence 3311 222223 34 4443322 554 555 999998664333 2222321 34677788888
Q ss_pred eCCCcEEEEEeeCCCCC
Q 040533 329 AADETLRFWEAFGPSGS 345 (364)
Q Consensus 329 ~~dg~i~vw~~~~~~~~ 345 (364)
+.++.|..||+.+++..
T Consensus 219 ~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ETTTEEEEEETTTTEEE
T ss_pred eCCCEEEEEECCCCCEE
Confidence 89999999999988754
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-07 Score=82.51 Aligned_cols=208 Identities=12% Similarity=0.152 Sum_probs=139.3
Q ss_pred EEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCc-EEEEEeecCCCCEEEEeeCCCc-----EEEEEcccCc----
Q 040533 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKR-VATASWNHWNGHILTSGSQDKS-----IINHDVRVSN---- 163 (364)
Q Consensus 94 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~---- 163 (364)
+|++.+..+|.|+.+|.|.+++- +-+.++.++.+... |..+.... ..++|++.++|+. +++|+++..+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46788889999999999988873 34455777777776 44443332 4468888877654 8999987542
Q ss_pred -cee--eeeec-----ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-CcceEEecccccceeEEEEccCCCcEE
Q 040533 164 -NVT--SRINA-----HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS-SKCLHRFRDHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 164 -~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~ 234 (364)
.+. ..... ...++.+++.+.+-+.+|+|-.+|.|..+.-+-... +...........+|+.+++..++..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 111 01111 356788999999989999999999999986221111 111122223467899999998887733
Q ss_pred EeecCCCCCeEEEEECCCCeE-EEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-cccc
Q 040533 235 ASGGGTQDGCIKIWNVQKGTC-IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTS 311 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~ 311 (364)
.++ ....|.+|.+....+ ...+.. +..+.+-.+++....++++. +..+.+|+....++-..+. +|..
T Consensus 188 Fv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-------~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 188 FVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-------SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-------CceEEEEcCCCcceeeeecCCCeE
Confidence 333 357899999985442 333443 46688888888777455443 7899999998777766776 6654
Q ss_pred ce
Q 040533 312 RI 313 (364)
Q Consensus 312 ~i 313 (364)
..
T Consensus 258 ~~ 259 (933)
T KOG2114|consen 258 EM 259 (933)
T ss_pred EE
Confidence 43
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=60.18 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=36.4
Q ss_pred CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 300 MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 300 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
++++..+++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.7e-06 Score=66.56 Aligned_cols=231 Identities=15% Similarity=0.162 Sum_probs=149.5
Q ss_pred CceEEEEcC-CCCEEEEEecCCc-EEEEecCCcceeeeeecCCCcEE--EEEeecCCCCEEEEeeC-----CCcEEEEEc
Q 040533 89 FPTSISWSQ-DAKTLAVGYMASK-LQLWDAETSKLIRNLEGHDKRVA--TASWNHWNGHILTSGSQ-----DKSIINHDV 159 (364)
Q Consensus 89 ~v~~~~~s~-~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~-----dg~i~~~d~ 159 (364)
....++.+| .+..++.+-.-|+ ..+||..+++....+....+.-. .-.|++ ++++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345678889 5566777766664 78999999998877665433322 468999 9999988644 478999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC------------------CCeEEEEeCCCCCCCcceEE--e--ccc
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD------------------DNLVHVWDHSKMSSSKCLHR--F--RDH 217 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~~--~--~~~ 217 (364)
...-..+..+..|.-....+.+.|||+.|+++.. +.++...|..++. .+.+ + ..|
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~---ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA---LLEQVELPPDLH 161 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc---eeeeeecCcccc
Confidence 8444446667677666778899999988877631 1233344433332 2333 3 236
Q ss_pred ccceeEEEEccCCCcEEEeec-CC-CC--CeEEEEECCCCeEEEEEe--------cCCCeEEEEEcCCccceeeeccCCc
Q 040533 218 RAAVKALAWCPYQFNVLASGG-GT-QD--GCIKIWNVQKGTCIHSVD--------TKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~-g~-~d--~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
...+..+++.++|.-+++.-. |. .+ --|.+++. ++.+..+. ....+-++++++++..+++++
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts---- 235 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS---- 235 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC----
Confidence 667999999998843333211 00 01 12333332 33233332 236789999999999887764
Q ss_pred cCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcE
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETL 334 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 334 (364)
-..+.+.+||..+++.+....-. .+..++-.+++ ++++.+. |.+
T Consensus 236 -PrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 236 -PRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred -CCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCC-ccE
Confidence 34899999999999988776543 35667766666 5655544 543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-08 Score=85.83 Aligned_cols=183 Identities=13% Similarity=0.245 Sum_probs=132.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
.+.++|++++ +++++.|+.+|.|++++.+.. . .+...|... .. +|.++++|+.||.|.|-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 4567788875 679999999999999997643 3 333335443 33 89999999999999999888776422
Q ss_pred eeeecccCcEEEEEEcCC-----CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 167 SRINAHTAEVCGLKWSNE-----GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
......++.+++++|+ .+.+++|+.-| +.++.-+-......+ .+....++|.++.|.. .+++-+.
T Consensus 108 --~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g---~lIAWan--- 177 (846)
T KOG2066|consen 108 --QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG---NLIAWAN--- 177 (846)
T ss_pred --eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC---cEEEEec---
Confidence 2246688999999997 56899999888 777764332222222 3455678999999975 5666654
Q ss_pred CCeEEEEECCCCeEEEEEecCC-------CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 242 DGCIKIWNVQKGTCIHSVDTKA-------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
|--|++||+.+++.+..++.+. -...+.|.++.+.++ |. ..+|+|..++
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW-------~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GW-------GDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ec-------CCeEEEEEEe
Confidence 5559999999998887775432 145678888777665 32 6788888876
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-09 Score=97.69 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=148.4
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC--eE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN--LV 197 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i 197 (364)
+..+.+..|....+|++|+- +.+.|+.|+..|.|+++++.++.. ......|..+|+-+.-+.+|..+++.+.-. -.
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 34456777889999999999 899999999999999999998874 667889999999999888998877766443 36
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-----CCCeEEEEEcC
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-----KAQICGLEWNR 272 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~ 272 (364)
.+|++.. ...+.+.+.+ -.++.|+.....-++ | +......+||++++.++.++-. .-.-+...|+|
T Consensus 1170 aLW~~~s--~~~~~Hsf~e----d~~vkFsn~~q~r~~-g--t~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASS--TGGPRHSFDE----DKAVKFSNSLQFRAL-G--TEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhcccc--ccCccccccc----cceeehhhhHHHHHh-c--ccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 7899765 3344555543 346778765422222 2 2456789999999988766421 12347788999
Q ss_pred CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce
Q 040533 273 HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 348 (364)
...+++- || .+||.+..+.+..|...... ..-.|+|.|..++.-++ |||+++.+.++..
T Consensus 1241 ~D~LIln---------dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1241 CDTLILN---------DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred CcceEee---------Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcC
Confidence 9988764 44 47999988888877655422 23469999998887764 8999987776544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-07 Score=76.79 Aligned_cols=242 Identities=11% Similarity=0.092 Sum_probs=141.5
Q ss_pred EEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC-CEEE
Q 040533 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLA 189 (364)
Q Consensus 111 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 189 (364)
+++.+..+.+....+..+...|..++|+|.+..++..++.+..|++.|+++... ...+..+ ..+++++|.-+. ++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeE
Confidence 666666666666667778889999999995556899999999999999997664 5556666 789999998854 5788
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEc------cCCCcEEEeecCCCCCeEEEEECCC----CeEEEEE
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC------PYQFNVLASGGGTQDGCIKIWNVQK----GTCIHSV 259 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~g~~d~~i~i~d~~~----~~~~~~~ 259 (364)
.|...|.|.+||++..+.......-.....+|..++.- +.+ .+++... --+..|+..- .-++..+
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~l----t~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFAL----TVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeee----hhhhhhhhhccccCCCccccc
Confidence 88899999999999765432211111123344444332 223 2333321 2244555432 2233334
Q ss_pred ecCCCeEEEEEcCCccceeeeccCC-ccCCCCeEE-EeeCCCCceeeecc-cc-ccc------eeEEeecCCCCEEEE-E
Q 040533 260 DTKAQICGLEWNRHHKEILSGHGFS-SSGDGQKLC-LWKYPHMTKWGELQ-HQ-TSR------ILELSQSPDGLTVVS-A 328 (364)
Q Consensus 260 ~~~~~v~~~~~~~~~~~l~~~~~~~-~~~~~~~i~-i~d~~~~~~~~~~~-~~-~~~------i~~i~~~~~~~~l~~-~ 328 (364)
+..+...++++.+..+.++....-. .-..-..+- --|..+|.++...+ .+ .+. -..+.-.++.++++. +
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEec
Confidence 4456667777777666666553210 000000011 11222333332221 11 100 011222345555544 4
Q ss_pred eCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 329 AADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 329 ~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
+..+.+.+||..+.+.++++.. ..+|.+++.
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~-~epv~Dicp 438 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLAL-SEPVLDICP 438 (463)
T ss_pred CCcceeEEeccchhheeeeccc-Ccceeecce
Confidence 5567899999999999888765 367776654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9e-07 Score=82.58 Aligned_cols=207 Identities=10% Similarity=0.104 Sum_probs=136.7
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK---- 204 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---- 204 (364)
...|.++.|.. +.+.++.+..+|.|.+-|..+.. ......-...|.+++|+||++.++..+..+++.+-+-.-
T Consensus 68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEec-ccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 35799999998 88889999999999999887665 444445567899999999999999998888877654210
Q ss_pred C----------------CCCcceEEeccc---------------------ccceeEEEEccCCCcEEEeecCC-CC-CeE
Q 040533 205 M----------------SSSKCLHRFRDH---------------------RAAVKALAWCPYQFNVLASGGGT-QD-GCI 245 (364)
Q Consensus 205 ~----------------~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~~~~~~~g~-~d-~~i 245 (364)
. .-++....+++. .+.=+++.|-.||.++.++.-.. .+ ..|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0 001111122211 11123589999996655532100 23 789
Q ss_pred EEEECCCCeEEEEE-ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC---CceeeeccccccceeEEeecCC
Q 040533 246 KIWNVQKGTCIHSV-DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH---MTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 246 ~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++||.. |..-.+- ...+.-.+++|-|.|..+++... -..++.|.+|..+. ++....+.....++..++|+.+
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~---~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQC---KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeee---cCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 999987 4332222 12344678999999999887543 23456899998543 2222223333445899999999
Q ss_pred CCEEEE---EeCCCcEEEEEeeCC
Q 040533 322 GLTVVS---AAADETLRFWEAFGP 342 (364)
Q Consensus 322 ~~~l~~---~~~dg~i~vw~~~~~ 342 (364)
+..||+ ......|++|-+.+.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeeecccccceEEEEEecCe
Confidence 999988 445555999987664
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.4e-08 Score=86.86 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=134.5
Q ss_pred CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
+..++.|+-...+..+|+.+.+..+...-..+.|.-++. +++.+.+|...|+|.+-|.++.+. +..+.+|.+.|.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCce-eeeeeccccceee
Confidence 445666776777888999988887776655556777776 889999999999999999987774 7889999999987
Q ss_pred EEEcCCCCEEEEEeC---------CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEE
Q 040533 179 LKWSNEGNLLASGGD---------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249 (364)
Q Consensus 179 ~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 249 (364)
+.. .|+.|++++. |.-|++||+|......++.- +.++ .-+.|+|.-...++..+ ..|...+.|
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~P-~flrf~Psl~t~~~V~S--~sGq~q~vd 294 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYGP-QFLRFHPSLTTRLAVTS--QSGQFQFVD 294 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccCc-hhhhhcccccceEEEEe--cccceeecc
Confidence 655 5889999875 45588999998765444332 2222 45678887666666655 789999999
Q ss_pred C---CCCe-EEEEE-ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 250 V---QKGT-CIHSV-DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 250 ~---~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
. .+.. -+..+ ...+.+.++++++++..++.|.. +|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~------~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH------EGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecc------cCcEeeec
Confidence 4 3321 12222 33455999999999999999865 99999997
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.6e-09 Score=82.35 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=122.0
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC----
Q 040533 180 KWSN--EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG---- 253 (364)
Q Consensus 180 ~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---- 253 (364)
+|+- .+.. ++.+.+-.|-+-|+.++- .+.+. ..+.|.++.|...+ .++..|. ..|.|..+|++.+
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~----~qsf~-sksDVfAlQf~~s~-nLv~~Gc--RngeI~~iDLR~rnqG~ 288 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGH----QQSFQ-SKSDVFALQFAGSD-NLVFNGC--RNGEIFVIDLRCRNQGN 288 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccc----ccccc-cchhHHHHHhcccC-CeeEecc--cCCcEEEEEeeecccCC
Confidence 5543 2334 445556778888877653 23333 56778888898766 5666665 9999999999864
Q ss_pred -eEEEEEecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCCce---eeeccccccceeE--EeecCCCCEEE
Q 040533 254 -TCIHSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHMTK---WGELQHQTSRILE--LSQSPDGLTVV 326 (364)
Q Consensus 254 -~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~--i~~~~~~~~l~ 326 (364)
.+...+.+++.|+++..-. ++++|++.. .+|.|++||++--++ +.++.+|.+.-.- +-..+....++
T Consensus 289 ~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~------M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 289 GWCAQRLYHDSSVTSLQILQFSQQKLMASD------MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred CcceEEEEcCcchhhhhhhccccceEeecc------CcCceeEeeehhhhcccceeeeecccccccccccccccccceEE
Confidence 5677788899999998877 778887764 499999999987766 8888888654333 33456667899
Q ss_pred EEeCCCcEEEEEeeCCCCCcceecc----CCceeeeeec
Q 040533 327 SAAADETLRFWEAFGPSGSGDFVSH----LDGLLSLKVS 361 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~~~~~----~~~v~~~~~s 361 (364)
+++.|...+||.++.+..+.++... ...+.+++|.
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 9999999999999999887776532 3345666664
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.4e-06 Score=65.61 Aligned_cols=195 Identities=13% Similarity=0.157 Sum_probs=113.6
Q ss_pred eeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
..+.+-...+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.+++.. ++.++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence 34556666799999999765 5566667788888886 47888776543 35678888875 666666655688999998
Q ss_pred cccCccee-----eee-----ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE--Eec------ccccc
Q 040533 159 VRVSNNVT-----SRI-----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH--RFR------DHRAA 220 (364)
Q Consensus 159 ~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~------~~~~~ 220 (364)
+....... ..+ ..++..+-.++|++.++.|+.+-+..-..+|.++.......+. ... .....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 84332111 111 1245668999999988777777766666666654311111111 111 12335
Q ss_pred eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC----------CCeEEEEEcCCccceeee
Q 040533 221 VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK----------AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 221 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~ 280 (364)
+.+++++|....+++... .+..|..+| .+|+.+..+... .+...+++.++|.+.+++
T Consensus 173 ~S~l~~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp --EEEEETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccceEEcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 788999998888888766 889999999 678877766543 257899999999877765
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=85.13 Aligned_cols=185 Identities=15% Similarity=0.208 Sum_probs=135.6
Q ss_pred CCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE
Q 040533 54 GRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA 133 (364)
Q Consensus 54 ~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 133 (364)
++..++.++-...+..+|+.+.+..+...+.. ..|+-++. +++.+.+|...|+|.+-|..+.+.+.++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC--CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 56678888888889999999888766665432 23554444 678999999999999999999999999999999999
Q ss_pred EEEeecCCCCEEEEeeCC---------CcEEEEEcccCcceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 040533 134 TASWNHWNGHILTSGSQD---------KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 203 (364)
.+.. .|+.|++++.. .-|+|||++.-+. +..+.-+.++ .-+.|+|. ...+++++..|...+-|..
T Consensus 222 DfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 222 DFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeec---cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 8877 78899988754 4578999987654 2333333333 44677773 4578888999999999943
Q ss_pred CCCCC-cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 204 KMSSS-KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 204 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
....+ ..+..+......+..+.+++.+. .++.+. .+|.|.+|.-
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd--~~g~v~~wa~ 341 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGD--HEGHVNLWAD 341 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCc-eEEEec--ccCcEeeecC
Confidence 32221 22333444456699999999984 555544 8999999973
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-06 Score=76.10 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=140.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEc--CCCCEEEEEe------------------cCCcEEEEecCCcceeee
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWS--QDAKTLAVGY------------------MASKLQLWDAETSKLIRN 124 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~------------------~dg~i~iw~~~~~~~~~~ 124 (364)
..|-..++...++.++.+++. ...+..++|- |+..|+++++ ..+.+.+.|.++.+...+
T Consensus 152 ~Rvari~l~~~~~~~i~~iPn-~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~q 230 (635)
T PRK02888 152 TRVARIRLDVMKCDKITELPN-VQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQ 230 (635)
T ss_pred cceEEEECccEeeceeEeCCC-ccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEE
Confidence 456666666666655555432 2223333332 3333333332 345677778887777666
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCC---C-cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQD---K-SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
+.-. +....++++| ++.++++.+.+ | ++..-+...... ...+.. ..+ -++.++|++...+ ++.|.+.
T Consensus 231 V~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfni--~~i--ea~vkdGK~~~V~--gn~V~VI 301 (635)
T PRK02888 231 VMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFNI--ARI--EEAVKAGKFKTIG--GSKVPVV 301 (635)
T ss_pred EEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCce-EEEEch--HHH--HHhhhCCCEEEEC--CCEEEEE
Confidence 6533 3456778889 88888777532 2 222222211110 111100 000 1234577766653 6789999
Q ss_pred eCCCCC--CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE------------EEEEecCCCeE
Q 040533 201 DHSKMS--SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC------------IHSVDTKAQIC 266 (364)
Q Consensus 201 d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------------~~~~~~~~~v~ 266 (364)
|.++.. ....+..+ .-......+.++|||+++++++. .+.++.++|+.+.+. ....+......
T Consensus 302 D~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL 378 (635)
T PRK02888 302 DGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL 378 (635)
T ss_pred ECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc
Confidence 977610 01223333 34556788999999999999876 899999999988552 44444444456
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCC----------Cceeeecccccccee-----EEeecCCCCEEEEEe
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH----------MTKWGELQHQTSRIL-----ELSQSPDGLTVVSAA 329 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~----------~~~~~~~~~~~~~i~-----~i~~~~~~~~l~~~~ 329 (364)
..+|.++|....+-.. |..|..|++.. ...+..+.-|-++-. .=.-.|||++|++..
T Consensus 379 HTaFDg~G~aytslf~------dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 379 HTAFDGRGNAYTTLFL------DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEECCCCCEEEeEee------cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 6788888874443322 99999999876 233444443333221 112367888888763
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=56.20 Aligned_cols=39 Identities=33% Similarity=0.681 Sum_probs=36.6
Q ss_pred cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 119 SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
++++.++.+|.+.|.+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.6e-07 Score=80.86 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=127.2
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
...+.+.+...++.+.-+|.|++.+.+..- ...+ .|... ..+|.++++|+.||+|.|-.+-+.+...++.
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~---~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNF---DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCCcc-cccc---ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 466677777677778889999999976553 1111 34333 6689999999999999999999888877766
Q ss_pred cCCCcEEEEEeecC----CCCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 127 GHDKRVATASWNHW----NGHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 127 ~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
...++.+++++|+ ..+.+++|+.-| +.++.-+--+. .......-.++|.++.|. |+++|-++.+| |++||
T Consensus 111 -f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 111 -FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD 185 (846)
T ss_pred -cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence 5578999999993 256899999888 76664321111 112355567899999996 67999999888 99999
Q ss_pred CCCCCCCcceEEeccc------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 202 HSKMSSSKCLHRFRDH------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
+..... +..+... ......+.|.++. .++.| ...+|++..++.
T Consensus 186 ~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIG---W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 186 TPTRQR---LTNIPPPSQSVRPELFPPHLHWQDED--RLVIG---WGDSVKICSIKK 234 (846)
T ss_pred ccccce---eeccCCCCCCCCcccCCCceEecCCC--eEEEe---cCCeEEEEEEec
Confidence 876433 2222221 1223467888765 34444 456788888873
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-06 Score=78.97 Aligned_cols=241 Identities=16% Similarity=0.215 Sum_probs=147.7
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc----ccC
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV----RVS 162 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~ 162 (364)
.+.|.++.|..+++.++.+...|.|.+-|.++.... ....-...|.+++|+| +++.++..+..+++.+-.- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhc
Confidence 468999999999999999999999999998776533 2333567899999999 9999999888887765432 101
Q ss_pred cce------------------eeeeecc---------------------cCcEEEEEEcCCCCEEEEE-----eCCCeEE
Q 040533 163 NNV------------------TSRINAH---------------------TAEVCGLKWSNEGNLLASG-----GDDNLVH 198 (364)
Q Consensus 163 ~~~------------------~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~-----~~d~~i~ 198 (364)
+++ ...+.+. .+.=++++|--||+++|+. .....++
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 100 0011110 0112358999999999983 3337899
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cC-CCeEEEEEcCC
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TK-AQICGLEWNRH 273 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~-~~v~~~~~~~~ 273 (364)
+||-+ +.. -..-....+.-.+++|-|.|..+.+......|+.|.+|.- +|-....+. .. .++..++|+.+
T Consensus 226 V~drE-g~L---ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 226 VYDRE-GAL---NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred Eeccc-chh---hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence 99965 211 1111112333467999998865555554446778999874 444333332 22 34899999999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCCCcee--eeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEe
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKW--GELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEA 339 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~ 339 (364)
+..|++-.. +.....|++|-..+..-. ..+....... +.|+|... .|..-..+|...++++
T Consensus 301 sdiLAv~~~---~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 301 SDILAVVTS---NLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCceeeeec---ccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 999987432 123445999988764321 1222122111 66776332 2333335555544443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.4e-07 Score=79.51 Aligned_cols=203 Identities=21% Similarity=0.254 Sum_probs=135.5
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCc-EEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCC-
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE-VCGLKWSNEGNLLASGGDDN-----LVHVWDHSKMSSS- 208 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~- 208 (364)
+|++ ++..++.|+.+|.|.+.+- .......++++... |..+-...+.++|++.+.|+ .+++||++..+..
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4566 8889999999999888773 33344667777766 44443333446888877665 4899999765322
Q ss_pred --cce--EEecc-----cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC----C-eEEEEEecCCCeEEEEEcCCc
Q 040533 209 --KCL--HRFRD-----HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK----G-TCIHSVDTKAQICGLEWNRHH 274 (364)
Q Consensus 209 --~~~--~~~~~-----~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~----~-~~~~~~~~~~~v~~~~~~~~~ 274 (364)
.++ ....+ .+.++.+++.+.+- ..+++|- .+|.|..+.-.- + +.........+|+++++..++
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf--~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGF--TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEe--cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 233 11112 35678889998874 5677765 899999885321 1 222333456889999999998
Q ss_pred cc-eeeeccCCccCCCCeEEEeeCCCCce-eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-cc
Q 040533 275 KE-ILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-SH 351 (364)
Q Consensus 275 ~~-l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~ 351 (364)
.. +++.+ ...|.+|.+....+ ...+..|.....|..+++....+++++. ..+.+|+.........+. +|
T Consensus 184 ~s~lFv~T-------t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 184 KSVLFVAT-------TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred ceeEEEEe-------cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCC
Confidence 87 33322 67899999885443 3347778888999999886664555543 478999988766655555 44
Q ss_pred C
Q 040533 352 L 352 (364)
Q Consensus 352 ~ 352 (364)
.
T Consensus 256 k 256 (933)
T KOG2114|consen 256 K 256 (933)
T ss_pred e
Confidence 3
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-05 Score=72.24 Aligned_cols=279 Identities=13% Similarity=0.091 Sum_probs=158.3
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCC----CCCce--EEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGE----DDFPT--SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~----~~~v~--~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
+.+++++.++.|+-+|..+++..=....... ...+. .+... ++..++.++.+|.|.-+|.++|+.+..+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 3466677789999999999876433332111 00010 11111 22678888889999999999999987766433
Q ss_pred Cc-----E-EEEEeecCCCCEEEEee---------CCCcEEEEEcccCcceeeeeecccC-------------------c
Q 040533 130 KR-----V-ATASWNHWNGHILTSGS---------QDKSIINHDVRVSNNVTSRINAHTA-------------------E 175 (364)
Q Consensus 130 ~~-----v-~~~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~~~~~~~~~~~~-------------------~ 175 (364)
.. + ....+ .+.+++.++ .+|.+..+|..+++..-........ .
T Consensus 141 ~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 141 QVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 21 1 11222 224455553 3678888898887754332211110 0
Q ss_pred E-EEEEEcCCCCEEEEEeCCC------------------eEEEEeCCCCCCCcceEEecccccce------eEEEEc---
Q 040533 176 V-CGLKWSNEGNLLASGGDDN------------------LVHVWDHSKMSSSKCLHRFRDHRAAV------KALAWC--- 227 (364)
Q Consensus 176 v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~~~v------~~~~~~--- 227 (364)
+ ...++.+.+..++.++.++ .|.-+|..+++. .-.++...... ....+.
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~---~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV---KWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE---EEEeeCCCCCCcccccCCCCeEEecc
Confidence 1 1234444556777777655 688888776543 33322111100 000111
Q ss_pred -cCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeecc-CC-----------ccCCCCeE
Q 040533 228 -PYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-FS-----------SSGDGQKL 292 (364)
Q Consensus 228 -~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~-----------~~~~~~~i 292 (364)
-++. .+++.++ .+|.+...|.++|+.+...... ...+..+| ..++.+.. .. ....++.+
T Consensus 295 ~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 295 PKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred ccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEE
Confidence 1221 2455544 7999999999999998776432 11233334 22222110 00 01236889
Q ss_pred EEeeCCCCceeeeccccc--------cce--eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 293 CLWKYPHMTKWGELQHQT--------SRI--LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 293 ~i~d~~~~~~~~~~~~~~--------~~i--~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.-.|..+++.+-+..... .+. ..+.. .+..|+.++.||.|+.+|..+++.+.++.
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 999999998887765331 111 11222 55689999999999999999999877665
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.2e-05 Score=65.43 Aligned_cols=269 Identities=12% Similarity=0.093 Sum_probs=171.4
Q ss_pred EEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE
Q 040533 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL 145 (364)
Q Consensus 67 i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 145 (364)
+.+++..+........+.. ....+...+++..+....... .+...+................-..++.++...+.+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR---GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC---CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEE
Confidence 6666666555444443322 566788888886555544222 455555442221111111113345677777344466
Q ss_pred EEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 146 TSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD---DNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 146 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
+....+..|.+.|..+.........+. ....++++++++.+.++.. ++.+.+.|-.+. +.+.....-..+ .
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~~~~~~vG~~P-~ 163 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KVTATIPVGNTP-T 163 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eEEEEEecCCCc-c
Confidence 666667899999977665433333232 5678999999987777765 578888885543 334443322234 8
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE-----EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH-----SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.++++|++..++++.. .++.|.+.|.......+ ..........+.++|+|.++.+.... +.++.+...|.
T Consensus 164 ~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~---~~~~~v~~id~ 238 (381)
T COG3391 164 GVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG---SGSNNVLKIDT 238 (381)
T ss_pred eEEECCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc---CCCceEEEEeC
Confidence 8999999988888764 78999999987766664 12333456788999999988776431 12368999998
Q ss_pred CCCceeee-ccccccceeEEeecCCCCEEEEEeC-CCcEEEEEeeCCCCCccee
Q 040533 298 PHMTKWGE-LQHQTSRILELSQSPDGLTVVSAAA-DETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 298 ~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~ 349 (364)
.++..... ..........+..+|+|..+.+... .+.+.+-|..+........
T Consensus 239 ~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 239 ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 88777665 2211114567899999999888844 4889999988876655544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.9e-05 Score=63.52 Aligned_cols=279 Identities=17% Similarity=0.125 Sum_probs=137.7
Q ss_pred cEEEEEe-C--CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE
Q 040533 57 NILAIAL-G--LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA 133 (364)
Q Consensus 57 ~~~~~~~-~--~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 133 (364)
.++.++. + ..+++.|+.+++..++....+ .......++|+.+.++....+..|+-.|+++.+....+.....-+-
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence 4555443 3 589999999999877765322 2233566789888887765567899999999887666666666665
Q ss_pred EEEeecC-CCCEEEEeeC---C-------------------CcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEE
Q 040533 134 TASWNHW-NGHILTSGSQ---D-------------------KSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLA 189 (364)
Q Consensus 134 ~~~~~~~-~~~~l~~~~~---d-------------------g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 189 (364)
...|... ++..++..-. | ..|.-.|+.+++ ...+......+..+.|+| +..+|+
T Consensus 127 ~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 127 YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEE
T ss_pred ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccCcccCCCCCCEEE
Confidence 6677532 4444433211 1 234455666554 333334456677889999 445666
Q ss_pred EEeC---CC-eEEEEeCCCCCCCcceEEeccc--ccceeEEEEccCCCcEEEeec--CCCCCeEEEEECCCCeEEEEEec
Q 040533 190 SGGD---DN-LVHVWDHSKMSSSKCLHRFRDH--RAAVKALAWCPYQFNVLASGG--GTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 190 ~~~~---d~-~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
-|-+ +. .-+||-++.... ....+..+ ...+..=-|.|+|..+...+. +..+..|.-+|..+++.......
T Consensus 205 fCHEGpw~~Vd~RiW~i~~dg~--~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~ 282 (386)
T PF14583_consen 205 FCHEGPWDLVDQRIWTINTDGS--NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM 282 (386)
T ss_dssp EEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE
T ss_pred EeccCCcceeceEEEEEEcCCC--cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC
Confidence 6543 22 125665543221 12222222 233444568999987766332 22566788899998876544333
Q ss_pred CCCeEEEEEcCCccceeeeccCC----------ccCCCCeEEEeeCCCCceeee---------cccccc-ceeEEeecCC
Q 040533 262 KAQICGLEWNRHHKEILSGHGFS----------SSGDGQKLCLWKYPHMTKWGE---------LQHQTS-RILELSQSPD 321 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~----------~~~~~~~i~i~d~~~~~~~~~---------~~~~~~-~i~~i~~~~~ 321 (364)
+ ....+..+++|++++.-.+-. ....+.-|+++++..++.... +.++.. .=-...|+||
T Consensus 283 p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPD 361 (386)
T PF14583_consen 283 P-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPD 361 (386)
T ss_dssp --SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TT
T ss_pred C-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCC
Confidence 3 455667778888765422100 001233677888876554321 111111 1135799999
Q ss_pred CCEE-EEEeCCCcEEEEEeeCC
Q 040533 322 GLTV-VSAAADETLRFWEAFGP 342 (364)
Q Consensus 322 ~~~l-~~~~~dg~i~vw~~~~~ 342 (364)
|+++ +++...|...||-++-+
T Consensus 362 gk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 362 GKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp SSEEEEEE-TTSS-EEEEEE--
T ss_pred CCEEEEECCCCCCccEEEEeCc
Confidence 9976 55566788877766543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-09 Score=90.46 Aligned_cols=261 Identities=15% Similarity=0.176 Sum_probs=161.3
Q ss_pred CCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcce--eeeeecCCCcEEEEEeecCCCCEEEEee----CCCcEEEEE
Q 040533 87 DDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKL--IRNLEGHDKRVATASWNHWNGHILTSGS----QDKSIINHD 158 (364)
Q Consensus 87 ~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~~~d 158 (364)
...+.|++++.+ ...+++|..+|.|-+-.+....- .....++..+.++++|++.+.+.||+|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345677777653 35889999999999988764422 2345668889999999997788888874 456799999
Q ss_pred cccCcc-eee--eee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEE
Q 040533 159 VRVSNN-VTS--RIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 159 ~~~~~~-~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 234 (364)
+.+.-. +.. .+. +......+++|..+.+++.+|.....+.++|+|.... ....-.+..+..+..+|.....+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~----~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD----SVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh----hhhhhhhhhcccceecCCCCCce
Confidence 987621 011 111 1334566888988889999999999999999884221 11111344577788888666677
Q ss_pred EeecCCCCCeEEEEEC-CC-CeEEEEEec-----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-------
Q 040533 235 ASGGGTQDGCIKIWNV-QK-GTCIHSVDT-----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM------- 300 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~-~~-~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~------- 300 (364)
++. .||.|.+||. ++ ..++..+.. ..++..++|+|...-+++... -+.+.|+.||+..-
T Consensus 212 cs~---~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~----RdS~tIrlydi~~v~t~~s~n 284 (783)
T KOG1008|consen 212 CSN---SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS----RDSITIRLYDICVVGTEGSAN 284 (783)
T ss_pred ecc---ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc----cCcceEEEecccccCCccccc
Confidence 754 5999999993 33 222222222 235899999997654443322 34788999997421
Q ss_pred -ce-e--e---eccccc--cceeEEeecCCC--CEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 301 -TK-W--G---ELQHQT--SRILELSQSPDG--LTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 301 -~~-~--~---~~~~~~--~~i~~i~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.. + . .++... +.|....|++.. ...+++-.+-.+.-+++.. ..+..|.++.+.+-|+-
T Consensus 285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s~ 353 (783)
T KOG1008|consen 285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFSF 353 (783)
T ss_pred ccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhhh
Confidence 00 0 0 122222 467777777754 2334444444444444332 12223444666666653
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-06 Score=75.09 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=100.9
Q ss_pred CcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 44 NDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
..++.++++-+.+.+..+++.|.+++|+-.+++..... ..+....+..+..|++..++|+|+..|.|.++.+..+....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK-NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhccc-ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 34467888877777888888999999998887764333 23445566777889999999999999999999887643221
Q ss_pred e------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEEEEEEc
Q 040533 124 N------LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 124 ~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~~ 182 (364)
. -..|...|++++|++ ++..+++|...|.|..-.+.+.. .....+....+.|..+...
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1 123788999999999 99999999999999988887621 1122333455777777765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-06 Score=73.87 Aligned_cols=203 Identities=19% Similarity=0.232 Sum_probs=124.2
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe---cC-CcEEEEecCCcceeeeeecCCCcEEEEEeecCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY---MA-SKLQLWDAETSKLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
.+.+-|.. +...+... .....+..-+|+|+++.++.-. .. ..+.++++++++....+. ..+.-...+|+| +
T Consensus 174 ~l~~~D~d-g~~~~~l~--~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp-D 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLT--DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP-D 248 (425)
T ss_pred eEEEEccC-CcceeEec--ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC-C
Confidence 44454544 33322222 3355677789999998776543 22 359999999887665554 334445678999 6
Q ss_pred CCE-EEEeeCCCc--EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCCCCcceEEec
Q 040533 142 GHI-LTSGSQDKS--IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNL--VHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 142 ~~~-l~~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~ 215 (364)
++. +++...||. |.++|+..+. ...+....+.-..-.|+|||+.++..+. .|. |.++|.+... ...+.
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----~~riT 322 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----VTRLT 322 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc----eeEee
Confidence 654 455566775 5566776555 2233333333447789999998877653 444 5555554332 22222
Q ss_pred ccccceeEEEEccCCCcEEEeecCCCCCe--EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 216 DHRAAVKALAWCPYQFNVLASGGGTQDGC--IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
.....-..-.|+|+|+.++.... .+|. |.+.|+.++...+.+..........|.+++..++...
T Consensus 323 ~~~~~~~~p~~SpdG~~i~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 323 FSGGGNSNPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ccCCCCcCccCCCCCCEEEEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 22222236789999988887763 3455 7777777666566665555566677888887776553
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.4e-05 Score=61.73 Aligned_cols=235 Identities=11% Similarity=0.104 Sum_probs=145.6
Q ss_pred CeEEEEECCCCceeeeeeecCC-C----CCceEEEEcCCCCEEEEEe--cCCcEEEEecCCcceeeeeecCCCcEEEEEe
Q 040533 65 LELYLWKQENGEVQKLLKVTGE-D----DFPTSISWSQDAKTLAVGY--MASKLQLWDAETSKLIRNLEGHDKRVATASW 137 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 137 (364)
..|.+||..+........++.. . .....++++.|++++++.. -...|.|-|++.++.+..+.. .+...-
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~i--- 142 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLI--- 142 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEE---
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEE---
Confidence 4799999999887666666542 1 2335678899999888754 345799999999999888773 222222
Q ss_pred ecCCCCEEEEeeCCCcEEEEEcccCcceeee----eecccCcE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 138 NHWNGHILTSGSQDKSIINHDVRVSNNVTSR----INAHTAEV-CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 138 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
-|..++-|.+-+.||.+.-..+....+.... +.....++ ..-++...+..++-.+.+|.|+--|+.... .+...
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~ 221 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGK 221 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccC
Confidence 2324456888889999999988855443321 11112222 223344445556667889999998877543 12222
Q ss_pred Eecc----------cccceeEEEEccCCCcEEEeec----CC-CC--CeEEEEECCCCeEEEEEecCCCeEEEEEcCCcc
Q 040533 213 RFRD----------HRAAVKALAWCPYQFNVLASGG----GT-QD--GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275 (364)
Q Consensus 213 ~~~~----------~~~~v~~~~~~~~~~~~~~~~~----g~-~d--~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 275 (364)
.+.. -.+.-.-+++++....+++.-. |+ .| ..|-++|+.+++.+..+....++.++..+.+.+
T Consensus 222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~ 301 (342)
T PF06433_consen 222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDK 301 (342)
T ss_dssp EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS
T ss_pred cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCC
Confidence 2211 1223345777766555554321 00 11 258888999999999999888899999999877
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
-++.+.. ..++.+.+||..+++.+.++..
T Consensus 302 P~L~~~~----~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 302 PLLYALS----AGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEE----TTTTEEEEEETTT--EEEEE--
T ss_pred cEEEEEc----CCCCeEEEEeCcCCcEEeehhc
Confidence 4443311 2378999999999999988764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-05 Score=63.49 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=132.8
Q ss_pred CCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee--------
Q 040533 97 QDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR-------- 168 (364)
Q Consensus 97 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------- 168 (364)
..++.|+.|+.+| +.+++.........+. +...|..+...| +-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999888 9999983333333332 333499999998 666666554 499999998765432210
Q ss_pred -----eecccCcEEEEE--EcCCC-CEEEEEeCCCeEEEEeCCCCC-CC-cceEEecccccceeEEEEccCCCcEEEeec
Q 040533 169 -----INAHTAEVCGLK--WSNEG-NLLASGGDDNLVHVWDHSKMS-SS-KCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 169 -----~~~~~~~v~~~~--~~~~~-~~l~~~~~d~~i~iwd~~~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
.......+..++ -...+ ..|+++ ....|.+|...... .. +..+.+. -...+.+++|.+ ..++.+.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~~ 155 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVGT 155 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEEe
Confidence 111223344444 11233 344444 45589988876532 22 3344443 357788999984 3344442
Q ss_pred CCCCCeEEEEECCCCeEEEEEecC-------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee-
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTK-------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG- 304 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~- 304 (364)
.....+.|+.++.....+... .++..+.. +++.+|++. +..-.+.| ..|++.+
T Consensus 156 ---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--------~~~g~fv~-~~G~~~r~ 222 (275)
T PF00780_consen 156 ---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--------DNIGVFVN-KNGEPSRK 222 (275)
T ss_pred ---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--------cceEEEEc-CCCCcCcc
Confidence 556889999977655443221 12333333 345666553 33333334 3444333
Q ss_pred -eccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 305 -ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 305 -~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
.++... .+.++++ ...||++.+.+ .|.||++.+++.++.+..
T Consensus 223 ~~i~W~~-~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 223 STIQWSS-APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPL 265 (275)
T ss_pred cEEEcCC-chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence 233322 4556666 34588877665 599999999988887764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-05 Score=68.95 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=133.4
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCccee-------------------------------------------eee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI-------------------------------------------RNL 125 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-------------------------------------------~~~ 125 (364)
.|+.+.|+++...|++|...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4789999999889999999999999875322110 112
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee-eeec------ccCcEEEEEEcC-----CC---CEEEE
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS-RINA------HTAEVCGLKWSN-----EG---NLLAS 190 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~------~~~~v~~~~~~~-----~~---~~l~~ 190 (364)
....++|++++.+ +-.+++.|+++|.+.|.|++...-+.. .+.. ....++++.|+. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 2246789999986 778999999999999999975542221 1111 234677888863 33 37889
Q ss_pred EeCCCeEEEEeCCCCCCCcce----EEecccccceeEEE-EccC-C-------------------CcEEEeecCCCCCeE
Q 040533 191 GGDDNLVHVWDHSKMSSSKCL----HRFRDHRAAVKALA-WCPY-Q-------------------FNVLASGGGTQDGCI 245 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~v~~~~-~~~~-~-------------------~~~~~~~~g~~d~~i 245 (364)
|...|.+.+|.+.-....... .....+.++|..+. ++.+ + +.+++..+ +..+
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS---e~~i 237 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS---ESDI 237 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc---ccce
Confidence 999999999987521111111 11123445555554 3211 1 12444443 7889
Q ss_pred EEEECCCCeEEEEEecC-CCeEEEEEc-----CCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc----cceeE
Q 040533 246 KIWNVQKGTCIHSVDTK-AQICGLEWN-----RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT----SRILE 315 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~-~~v~~~~~~-----~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~----~~i~~ 315 (364)
+++...+.+........ .....+.+- ..+..|++-.. +|.+++|.++..+.+..++-+. ..+..
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~------~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN------NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET------TSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC------CCcEEEEECCCchHhhcccCCCccccccccc
Confidence 99999888776655422 123334442 24444554433 9999999999999988776532 34566
Q ss_pred EeecCCCCEEEEEeCCCcEEEEEee
Q 040533 316 LSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 316 i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
..++++|..++-.+.. .+.++.+-
T Consensus 312 ssis~~Gdi~~~~gps-E~~l~sv~ 335 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPS-EIQLFSVW 335 (395)
T ss_dssp -EE-TTS-EEEE-SSS-EEEEEEEE
T ss_pred cEECCCCCEEEEeCcc-cEEEEEEE
Confidence 7889999977766543 44444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.9e-05 Score=58.00 Aligned_cols=190 Identities=14% Similarity=0.104 Sum_probs=110.8
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEE-EE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT-AS 136 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~-~~ 136 (364)
++.++-.+.+.--|..+|++.-...+ ..++.+-+.- -|++++.|+..|.+++.+.++|.+...+.... .|.+ ..
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~ 100 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQ 100 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceE
Confidence 55566678888888888876433333 3334333332 47789999999999999999998887776432 2222 22
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 216 (364)
..+ ++.++..|+.|++.+..|.++...+.+ .+...+...+-+..|-...|+.+...|.+.--..+... ...+-.
T Consensus 101 ~d~-~~glIycgshd~~~yalD~~~~~cVyk-skcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~----~~~~w~ 174 (354)
T KOG4649|consen 101 CDF-DGGLIYCGSHDGNFYALDPKTYGCVYK-SKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYS----STEFWA 174 (354)
T ss_pred EcC-CCceEEEecCCCcEEEecccccceEEe-cccCCceeccceecCCCceEEEEeccceEEEEccCCCC----cceehh
Confidence 334 899999999999999999987765333 33322333344455522344445555655444433221 111111
Q ss_pred --cccceeE--EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCe
Q 040533 217 --HRAAVKA--LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI 265 (364)
Q Consensus 217 --~~~~v~~--~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v 265 (364)
..+++.+ ++..+ .+..+. -||.+.-+| ..|+.+..+...++|
T Consensus 175 ~~~~~PiF~splcv~~---sv~i~~---VdG~l~~f~-~sG~qvwr~~t~GpI 220 (354)
T KOG4649|consen 175 ATRFGPIFASPLCVGS---SVIITT---VDGVLTSFD-ESGRQVWRPATKGPI 220 (354)
T ss_pred hhcCCccccCceeccc---eEEEEE---eccEEEEEc-CCCcEEEeecCCCce
Confidence 1222221 22222 333322 477777777 566666666555554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.3e-05 Score=66.95 Aligned_cols=221 Identities=15% Similarity=0.130 Sum_probs=117.9
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEE-EcccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINH-DVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~ 163 (364)
.....+..+.++|+|++++++ .+|...||.....+.... +.-...+|.+ .++ +|+-...+.|.++ +++...
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-T
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCcccc
Confidence 345568899999999999985 588999998444333221 2345678887 444 6666668889996 443222
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
...+.. ...+..+-. |.+|+..+.+ .|.+||..+. +.+..+... +|..+.|++++..+.+.+ +.
T Consensus 102 --~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~---~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~ 165 (443)
T PF04053_consen 102 --VKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETG---KLIRRIDVS--AVKYVIWSDDGELVALVT----KD 165 (443)
T ss_dssp --T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT-----EEEEESS---E-EEEEE-TTSSEEEEE-----S-
T ss_pred --ceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHc---ceeeEEecC--CCcEEEEECCCCEEEEEe----CC
Confidence 112211 123444432 7788777655 8999997764 447766532 489999999986655553 56
Q ss_pred eEEEEECCCC-----------eEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc
Q 040533 244 CIKIWNVQKG-----------TCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS 311 (364)
Q Consensus 244 ~i~i~d~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 311 (364)
.+.+++.... .....+. ....|.+..|..+ -++++. .+.++. +..|+ ...+..-..
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT--------~~~lkY--l~~Ge-~~~i~~ld~ 233 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT--------SNHLKY--LVNGE-TGIIAHLDK 233 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE---------TTEEEE--EETTE-EEEEEE-SS
T ss_pred eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc--------CCeEEE--EEcCC-cceEEEcCC
Confidence 7888775433 0233332 2678899999877 444443 335554 22222 222222235
Q ss_pred ceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 312 RILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 312 ~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
++.=+.+.|+.+.++....|+.|..+.+..
T Consensus 234 ~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 234 PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 666677778777888888888888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-06 Score=73.75 Aligned_cols=133 Identities=16% Similarity=0.252 Sum_probs=91.0
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEE----ecCCc----EEEEecCCcceee----eeecCCCcE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVG----YMASK----LQLWDAETSKLIR----NLEGHDKRV 132 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~dg~----i~iw~~~~~~~~~----~~~~~~~~v 132 (364)
.+.++....++...+... ..+..+.++.||. +...+.+. +.+|. -.+|++..++..+ .+ .....|
T Consensus 185 Nl~L~~~~~~klEvL~yi-rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v 262 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYI-RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQV 262 (545)
T ss_pred cEEEEEecCCcEEEEEEE-EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcc
Confidence 455555555544333332 3345567888886 33444432 23443 4567766554321 22 367889
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.+++++| +.+.|+.|+.||.|.+||...+.. ......-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 263 ~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 263 ICCARSP-SEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred eEEecCc-ccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999 999999999999999999875532 2223445678999999999999999999999999753
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.2e-07 Score=76.94 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.....|.|++++|+.+.|+.|+.||.|.+||...+... +....-..+.++|+| ++.++++|+..|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 45778999999999999999999999999998766333 223456678999999 99999999999999999987544
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00019 Score=59.44 Aligned_cols=272 Identities=12% Similarity=0.128 Sum_probs=150.3
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecCCC-cEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGHDK-RVA 133 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~-~v~ 133 (364)
+.++++|..+++..-.... +..-.+..+|+++.++++. ..-.|.+||.++-.....+.-..+ +..
T Consensus 17 ~rv~viD~d~~k~lGmi~~----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeec----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4899999999887655542 2344577899999888753 233599999999877765543322 222
Q ss_pred ------EEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 134 ------TASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 134 ------~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.++++. ++++++... ---.|.|.|+..++- ...+.. .+.. +.+ | .+.-+.+-+.||.+.-..+..
T Consensus 93 ~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kv-v~ei~~-PGC~--~iy-P~~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 93 VVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKV-VGEIDT-PGCW--LIY-PSGNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEEG-TSEE--EEE-EEETTEEEEEETTSCEEEEEETS
T ss_pred ecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCce-eeeecC-CCEE--EEE-ecCCCceEEEecCCceEEEEECC
Confidence 234555 565555443 223566667664442 333321 2211 112 2 123577777899998888774
Q ss_pred CCCCcceE--Eecccccce-eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEEec-----------CCCeEEE
Q 040533 205 MSSSKCLH--RFRDHRAAV-KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSVDT-----------KAQICGL 268 (364)
Q Consensus 205 ~~~~~~~~--~~~~~~~~v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~-----------~~~v~~~ 268 (364)
........ .+.....++ ..-++...+..++... .+|.|+-.|+...... ..+.. .+...-+
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 33211111 111112222 2223333333333322 6899999998765432 22221 0223346
Q ss_pred EEcCCccceeeeccC-Ccc-CC--CCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEE-eCCCcEEEEEeeCC
Q 040533 269 EWNRHHKEILSGHGF-SSS-GD--GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSA-AADETLRFWEAFGP 342 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~-~~~-~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~-~~dg~i~vw~~~~~ 342 (364)
++++....|++-..- .-+ -. ...|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++. ..++.|.+||..++
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 666655444432110 000 01 23588889999999998874 24678999998776 66554 45799999999999
Q ss_pred CCCcceec
Q 040533 343 SGSGDFVS 350 (364)
Q Consensus 343 ~~~~~~~~ 350 (364)
+.+.+...
T Consensus 323 k~~~~~~~ 330 (342)
T PF06433_consen 323 KLVRSIEQ 330 (342)
T ss_dssp -EEEEE--
T ss_pred cEEeehhc
Confidence 98887763
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-08 Score=87.54 Aligned_cols=200 Identities=21% Similarity=0.287 Sum_probs=134.0
Q ss_pred ceeecccCCCc---cEEEE-EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEe----cCCcEEEEec
Q 040533 46 YYSNMMDWGRN---NILAI-ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGY----MASKLQLWDA 116 (364)
Q Consensus 46 ~~~~~~~~~~~---~~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~iw~~ 116 (364)
.++.+++|.-+ -++++ ..+|.|.+-.............+++....++++|++ |.+.||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 35677776542 25554 467899888776544332233457888999999998 667888874 3567999999
Q ss_pred CCc--cee--eeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEE
Q 040533 117 ETS--KLI--RNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLAS 190 (364)
Q Consensus 117 ~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 190 (364)
.++ .+. ..+.+ -.....+++|.. +.+++.+|.....+.++|++... .....-.+..+..+...| .++++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCceec
Confidence 876 111 12222 334566889986 88899999999999999998432 111112334566677888 7778876
Q ss_pred EeCCCeEEEEe-CCCCCCCcceEEecc----cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 191 GGDDNLVHVWD-HSKMSSSKCLHRFRD----HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 191 ~~~d~~i~iwd-~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
-. ||.|.+|| .++.+ .++..+.. ....+..++|+|....++++.. ...++|+++|+..
T Consensus 214 ~~-dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDICV 276 (783)
T ss_pred cc-cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEecccc
Confidence 65 99999999 44332 22222222 2235889999999888888764 3568999999853
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00011 Score=66.28 Aligned_cols=238 Identities=11% Similarity=0.113 Sum_probs=134.3
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEe---------cCCcEEEEecCCcceeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGY---------MASKLQLWDAETSKLIRN 124 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~---------~dg~i~iw~~~~~~~~~~ 124 (364)
+.+++++.++.|+-+|.++++..=......+...-..+.-+| .+..++.++ .+|.+.-+|.++|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 456666778999999999998754444332210000111122 224555554 367899999999998877
Q ss_pred eecCCCc--------------------E-EEEEeecCCCCEEEEeeCCC------------------cEEEEEcccCcce
Q 040533 125 LEGHDKR--------------------V-ATASWNHWNGHILTSGSQDK------------------SIINHDVRVSNNV 165 (364)
Q Consensus 125 ~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~dg------------------~i~~~d~~~~~~~ 165 (364)
+...... + ...++.+ .+..++.++.++ .|.-+|..+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 6542110 1 1233444 456777776555 6888898888754
Q ss_pred eeeeecccC-----cEEEEEEc----CCCC---EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcE
Q 040533 166 TSRINAHTA-----EVCGLKWS----NEGN---LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 166 ~~~~~~~~~-----~v~~~~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 233 (364)
-.....+.. ......+. -++. .++.++.+|.+...|.++++. +-..... ...++.+| + .+
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~---~W~~~~~---~~~~~~~~-~-~v 341 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL---ISARPEV---EQPMAYDP-G-LV 341 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE---eeEeEee---ccccccCC-c-eE
Confidence 432211110 00000111 1332 577888899999999887643 3332211 11233333 1 23
Q ss_pred EEeec---------------CCCCCeEEEEECCCCeEEEEEecC---------CCeEEEEEcCCccceeeeccCCccCCC
Q 040533 234 LASGG---------------GTQDGCIKIWNVQKGTCIHSVDTK---------AQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 234 ~~~~~---------------g~~d~~i~i~d~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
++... ...+|.+.-.|+.+|+.+-+.... .+...-.....+..++++ +.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g------~~d 415 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG------AAD 415 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEE------CCC
Confidence 22110 114688999999999988776544 111110111234455555 349
Q ss_pred CeEEEeeCCCCceeeeccc
Q 040533 290 QKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~~ 308 (364)
+.++.+|..+++.+.+.+.
T Consensus 416 G~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 416 GYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CeEEEEECCCCceeeEEEC
Confidence 9999999999999988764
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-05 Score=67.11 Aligned_cols=240 Identities=15% Similarity=0.132 Sum_probs=136.5
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEee---CC-CcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGS---QD-KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d-g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
.+.+-|.+ +.....+......+..-+|+| ++..++-.+ .. ..+.++++.++...... ...+.-...+|+|||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG 249 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDG 249 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceee--ccCCccCCccCCCCC
Confidence 34444444 555555555566777888999 666554432 22 35889999877642221 233444567899999
Q ss_pred CEEEEEe-CCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe--EEEEECCCCeEEEEEe
Q 040533 186 NLLASGG-DDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC--IKIWNVQKGTCIHSVD 260 (364)
Q Consensus 186 ~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~~~~~~~~~ 260 (364)
+.|+.+. .|| .|+++|+.... ...+....+.-..=.|+|+|+.++.+.. ..|. |.++|...+...+...
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sd--r~G~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKN----LPRLTNGFGINTSPSWSPDGSKIVFTSD--RGGRPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCc----ceecccCCccccCccCCCCCCEEEEEeC--CCCCcceEEECCCCCceeEeec
Confidence 8776554 555 46667776544 2223333333346679999999888865 5554 6666666655533333
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC-cEEEEEe
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE-TLRFWEA 339 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~vw~~ 339 (364)
....-..-.|+|+|++++.... . ..+-.|.+.|+.++..+..+. +......-.|.++|+.++..+.-+ .=.++.+
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~-~--~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~ 399 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESS-S--GGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQGGGSVLSLV 399 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEec-c--CCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCCCCceEEEe
Confidence 3333337899999999987652 1 111347777776666433332 223334567778887665544322 2222222
Q ss_pred e-CCCCCcceeccCCceeeeeeccC
Q 040533 340 F-GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 340 ~-~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
. +++....+....+.+..-+|+|.
T Consensus 400 s~~g~~~~~~~~~~~~~~~p~w~~~ 424 (425)
T COG0823 400 SLDGRVSRPLPLADGDVRVPAWSPV 424 (425)
T ss_pred eccceeEEEEeccCcceecccccCC
Confidence 2 22222233333445666666663
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00036 Score=58.08 Aligned_cols=227 Identities=12% Similarity=0.085 Sum_probs=128.2
Q ss_pred ccEEEEEeCCeEEEEEC-CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee----------
Q 040533 56 NNILAIALGLELYLWKQ-ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN---------- 124 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------- 124 (364)
+.++.|+.+| +++++. .......... ...|..+...|+-+.|++-+ |+.+.++++..-.....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 4566665555 999998 3333333332 33499999999888777764 69999999876543331
Q ss_pred ----eecCCCcEEEEE-eecCCCCEEEEeeCCCcEEEEEcccCc----ceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 125 ----LEGHDKRVATAS-WNHWNGHILTSGSQDKSIINHDVRVSN----NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 125 ----~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
.......+...+ -....+...++......|.+|.+.... ...+.+ .-...+.+++|. ++.++.|..++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeCCc
Confidence 011223444444 112134444444445588888887531 122333 234778899998 45777777554
Q ss_pred eEEEEeCCCCCCCcceEEecc----------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE--EEecCC
Q 040533 196 LVHVWDHSKMSSSKCLHRFRD----------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH--SVDTKA 263 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~ 263 (364)
..+.|+.+... ..+..... ...++..+... ++ .++++ .|..-.+.|. .|+..+ .+.=..
T Consensus 159 -f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-e~Ll~----~~~~g~fv~~-~G~~~r~~~i~W~~ 229 (275)
T PF00780_consen 159 -FYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN-EFLLC----YDNIGVFVNK-NGEPSRKSTIQWSS 229 (275)
T ss_pred -eEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-Cc-eEEEE----ecceEEEEcC-CCCcCcccEEEcCC
Confidence 78888885443 22221111 11233333333 33 34443 3454455554 444333 333334
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
...++++. ..++++.. ++.|.||++.+++.++.+...
T Consensus 230 ~p~~~~~~--~pyli~~~-------~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 230 APQSVAYS--SPYLIAFS-------SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred chhEEEEE--CCEEEEEC-------CCEEEEEECcCCcEEEEEECC
Confidence 55556553 34665543 677999999999988877643
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=78.61 Aligned_cols=114 Identities=20% Similarity=0.402 Sum_probs=92.2
Q ss_pred CCCceEEEEcCCCCEEEEEe----cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 87 DDFPTSISWSQDAKTLAVGY----MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
....+-..|+|...++|+++ ..|.|.|| .++|++.+... -.-.+++++|+| ..-.|+.|-.-|.+.+|...+.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCc
Confidence 33445567999999999886 46889999 47777655433 233467799999 8999999999999999998766
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+. ......|..+|..+.||++|..++++..-|.|.+|....
T Consensus 92 e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 ET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 53 556668999999999999999999999999999998764
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00023 Score=63.81 Aligned_cols=223 Identities=9% Similarity=-0.012 Sum_probs=133.0
Q ss_pred CCCEEEEEec-CCcEEEEecCCcceeeeeec-CCCcEEEEEee--cCCCCEEEEeeC-------CC-----------cEE
Q 040533 98 DAKTLAVGYM-ASKLQLWDAETSKLIRNLEG-HDKRVATASWN--HWNGHILTSGSQ-------DK-----------SII 155 (364)
Q Consensus 98 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~l~~~~~-------dg-----------~i~ 155 (364)
||++|..-.. +..|-..+++..++-+.+.- ....+..++|- | +..+++++++ || .+.
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 6778877653 55666667766655443331 22334444443 4 4444444332 33 344
Q ss_pred EEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC---C-eEEEEeCCCCCCCcceEEecccccceeEEEEccCCC
Q 040533 156 NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD---N-LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
+.|.++.+....... ......++++++|+++++.+.+ | ++..-+.... ..+..+.. ..+ -++.++|+
T Consensus 219 vID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---d~~vvfni--~~i--ea~vkdGK 289 (635)
T PRK02888 219 AVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---DWVVVFNI--ARI--EEAVKAGK 289 (635)
T ss_pred EEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccC---ceEEEEch--HHH--HHhhhCCC
Confidence 555554332111111 1233557888888888877632 2 2222222111 01111110 000 12345676
Q ss_pred cEEEeecCCCCCeEEEEECCC-----CeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce----
Q 040533 232 NVLASGGGTQDGCIKIWNVQK-----GTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---- 302 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---- 302 (364)
+.++ .++.|.+.|.++ .+.+..+........+.++|+|++++++.. .++.+.++|+.+.+.
T Consensus 290 ~~~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank-----lS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 290 FKTI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK-----LSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred EEEE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC-----CCCcEEEEEChhhhhhhhc
Confidence 6555 257899999998 467778888889999999999999998764 389999999987653
Q ss_pred --------eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 303 --------WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 303 --------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
..+.+-.. .....+|+++|....|--.|..|..|++..
T Consensus 360 ~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333222 235678999998888888999999999886
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00092 Score=59.25 Aligned_cols=247 Identities=12% Similarity=0.120 Sum_probs=130.0
Q ss_pred ceEEEEcCCCCEEEEEe-cCC----cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC-----------c
Q 040533 90 PTSISWSQDAKTLAVGY-MAS----KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK-----------S 153 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~-~dg----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~ 153 (364)
+....+||+|+++|.+- ..| .++++|+++++.+...-.. .....+.|.+ +++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence 34678999999998763 344 4999999999776532111 1123399999 766655544222 3
Q ss_pred EEEEEcccCcce-eeeeecccCc--EEEEEEcCCCCEEEEEeC---C-CeEEEEeCCCCC-CCcceEEecccccce-eEE
Q 040533 154 IINHDVRVSNNV-TSRINAHTAE--VCGLKWSNEGNLLASGGD---D-NLVHVWDHSKMS-SSKCLHRFRDHRAAV-KAL 224 (364)
Q Consensus 154 i~~~d~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~~-~~~~~~~~~~~~~~v-~~~ 224 (364)
|+.|.+.+.... ...+...... ...+..++++++++.... + ..+.+.|+.... .......+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 777777665432 2333333322 567889999998775432 2 457888877641 011233333333333 333
Q ss_pred EEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEE-ecCCC--eEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSV-DTKAQ--ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 225 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~-~~~~~--v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
... .+..++.+..+...+.|.-.++.+... ...+ ..... +..+.. .+.+|+.... -.....|+++++.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~---~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYR---ENGSSRLRVYDLD 357 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEE---ETTEEEEEEEETT
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEE---ECCccEEEEEECC
Confidence 333 443455554444668888889887652 2233 33332 444444 3444444321 0124578999998
Q ss_pred CCceeeecc-ccccceeEEeecCCCCEEE-EEeC---CCcEEEEEeeCCCC
Q 040533 299 HMTKWGELQ-HQTSRILELSQSPDGLTVV-SAAA---DETLRFWEAFGPSG 344 (364)
Q Consensus 299 ~~~~~~~~~-~~~~~i~~i~~~~~~~~l~-~~~~---dg~i~vw~~~~~~~ 344 (364)
.+.....+. ...+.|..+...+++..+. +.+. -+++..||+.+++.
T Consensus 358 ~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 358 DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp -TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 333333332 2334566666666655432 2221 35677777777654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00049 Score=60.33 Aligned_cols=195 Identities=12% Similarity=0.114 Sum_probs=101.7
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc-----eeeeeecccCcEEEEEEcCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN-----VTSRINAHTAEVCGLKWSNE 184 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~ 184 (364)
.|.||+. .|+.+..+.-..+.+.++.|+. .+.|++...||.+++||+..... ......-....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 4888875 4666666554448899999985 45666778999999999862220 01111111122223334445
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc---------ceeE-EEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA---------AVKA-LAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~v~~-~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
|-.++ ..++.+.+.. ..........+..-.. .... ..++.+....+... .++.+.+.+-...+
T Consensus 139 GivvL--t~~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSFK 211 (410)
T ss_pred CEEEE--CCCCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEccccc
Confidence 53333 3345454443 1111101111100000 0000 12333332222221 34455544432221
Q ss_pred EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCC
Q 040533 255 CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGL 323 (364)
Q Consensus 255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~ 323 (364)
.+...+++..++.||+|++++.-.. +|.+.+....-.+.+.++... ......+.|.-+..
T Consensus 212 ---~i~~~~~i~~iavSpng~~iAl~t~------~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 212 ---QIDSDGPIIKIAVSPNGKFIALFTD------SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cccCCCCeEEEEECCCCCEEEEEEC------CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 1334578999999999999987653 788888887666666665543 34556777765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-06 Score=74.02 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=107.4
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
...|.--+++..+++++.|+..|.+++|+-..++....-. +..+.+..+..++ +..++|.|+..|.|.++-+....+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCC
Confidence 3445555566788999999999999999987765543322 2345566667788 8899999999999999988765432
Q ss_pred eeee-----ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 166 TSRI-----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK-MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 166 ~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
...+ ..|...|++++|++++..+++|...|+|..-.+.. ....-..+.+....+.|..+.... .+++++..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl- 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL- 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh-
Confidence 2211 23678999999999999999999999998887765 111112333333456676666554 24555432
Q ss_pred CCCCeEEEEECCC
Q 040533 240 TQDGCIKIWNVQK 252 (364)
Q Consensus 240 ~~d~~i~i~d~~~ 252 (364)
-...+++++.
T Consensus 189 ---~r~~Lc~tE~ 198 (726)
T KOG3621|consen 189 ---TRCILCQTEA 198 (726)
T ss_pred ---hhhheeecch
Confidence 2344555543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00051 Score=55.21 Aligned_cols=202 Identities=13% Similarity=0.186 Sum_probs=109.5
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
.+.+-...+..++|+|+++.++++....+.|..++.+ ++ ++..+.-. .+..-.+++..++.++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3445556799999999556677778888888777764 33 34443322 356788999888877776656899999988
Q ss_pred CCCCCCcce---EEec-----ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC---CeEEEEEe---------cC
Q 040533 203 SKMSSSKCL---HRFR-----DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK---GTCIHSVD---------TK 262 (364)
Q Consensus 203 ~~~~~~~~~---~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~---------~~ 262 (364)
......... ..+. .++..+-.++|+|.+..++++- +..-..+|.+.. ...+.... .-
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeecccccccccccee
Confidence 443211111 1111 2445688999999887777764 344455555543 22222111 12
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc---------cceeEEeecCCCCEEEEEeCCCc
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT---------SRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
..+.+++++|....++.-+ ..+..|..+| .+|+.+..+.-.. ...-.|+|.++|++. ..++-+.
T Consensus 171 ~d~S~l~~~p~t~~lliLS-----~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNl 243 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILS-----DESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNL 243 (248)
T ss_dssp S---EEEEETTTTEEEEEE-----TTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTE
T ss_pred ccccceEEcCCCCeEEEEE-----CCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCce
Confidence 3478899999765544432 3478888888 6666655443111 246789999999544 4456665
Q ss_pred EEEE
Q 040533 334 LRFW 337 (364)
Q Consensus 334 i~vw 337 (364)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.001 Score=57.91 Aligned_cols=225 Identities=12% Similarity=0.132 Sum_probs=150.0
Q ss_pred CCceEEEEcCCCCEEEE-EecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCc
Q 040533 88 DFPTSISWSQDAKTLAV-GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSN 163 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~ 163 (364)
.....++.++.+..+.. ...++.|.+.|..+.+......-.. ....++++| +++.+..+.. ++++.+.|..+..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 44567888888885544 4456899999988777776655332 567889999 6655555544 6888888887666
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCc-ceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSK-CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
.... ...-..+ ..++++|+|+.++... .++.|.+.|.......+ .......-......+.++|++..+.++..++.
T Consensus 152 ~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 152 VTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 5444 3332334 8899999999666665 78899999965532210 00001112233467899999987877765333
Q ss_pred CCeEEEEECCCCeEEEE-EecCC-CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc---cceeEE
Q 040533 242 DGCIKIWNVQKGTCIHS-VDTKA-QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT---SRILEL 316 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~i~~i 316 (364)
++.+...|..++..... ..... ....+..+|+|..+.+... ..+.+.+.|..+........... ..+..+
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-----~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~ 304 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-----QGGTVSVIDGATDRVVKTGPTGNEALGEPVSI 304 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-----CCCeEEEEeCCCCceeeeecccccccccceec
Confidence 47999999998887765 22222 5678899999999988753 26889999988877776654332 234455
Q ss_pred eecCC
Q 040533 317 SQSPD 321 (364)
Q Consensus 317 ~~~~~ 321 (364)
++.+.
T Consensus 305 ~~~~~ 309 (381)
T COG3391 305 AISPL 309 (381)
T ss_pred cceee
Confidence 55443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00052 Score=53.85 Aligned_cols=101 Identities=8% Similarity=0.005 Sum_probs=68.3
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCce-EEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPT-SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT 134 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 134 (364)
+.++.++..|.+++.+.++|+....+...+ .|. .....+++..+..|+.|++.+..|..+...+...+...+...+
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILE---TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehh---hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 346677789999999999997554444322 222 2335678999999999999999999999888877655444455
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
-+..| ....|..+...|.+.--...
T Consensus 141 P~i~~-g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 141 PVIAP-GDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred ceecC-CCceEEEEeccceEEEEccC
Confidence 55666 34444445555555444433
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00066 Score=57.84 Aligned_cols=196 Identities=14% Similarity=0.122 Sum_probs=115.8
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEE---cCC----CCEEEEEec---------C-CcEEEEecCCc----ceee
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISW---SQD----AKTLAVGYM---------A-SKLQLWDAETS----KLIR 123 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~---s~~----~~~l~~~~~---------d-g~i~iw~~~~~----~~~~ 123 (364)
..|++.|..+.+......+.. ...+++++. ..+ ..++++|+. . |.|.++++.+. ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 468899988888777777754 344554443 322 468888864 2 88999999884 1222
Q ss_pred ee--ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 124 NL--EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 124 ~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.+ ....++|++++-. ++. |+++. ++.|.+|++...+.+. .........+.++... ++++++|.....+.++
T Consensus 81 ~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 22 2357889988875 444 44333 4789999998777222 2222233456666655 5599999988888877
Q ss_pred eCCCCCCCcceEEec--ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-------Ce----EEEEEecCCCeEE
Q 040533 201 DHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-------GT----CIHSVDTKAQICG 267 (364)
Q Consensus 201 d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~----~~~~~~~~~~v~~ 267 (364)
..+... ..+..+. .....++++.|-+++. .++.+. .+|.+.++.... +. ....+..+..+++
T Consensus 155 ~~~~~~--~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D--~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~ 229 (321)
T PF03178_consen 155 RYDEEN--NKLILVARDYQPRWVTAAEFLVDED-TIIVGD--KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS 229 (321)
T ss_dssp EEETTT--E-EEEEEEESS-BEEEEEEEE-SSS-EEEEEE--TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred EEEccC--CEEEEEEecCCCccEEEEEEecCCc-EEEEEc--CCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence 544311 1122222 2345688888886665 444443 799999998752 22 3344556677877
Q ss_pred E---EEcC
Q 040533 268 L---EWNR 272 (364)
Q Consensus 268 ~---~~~~ 272 (364)
+ .+.|
T Consensus 230 ~~~~~l~~ 237 (321)
T PF03178_consen 230 FRRGSLIP 237 (321)
T ss_dssp EEE--SS-
T ss_pred EEEEEeee
Confidence 7 5555
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00045 Score=60.71 Aligned_cols=222 Identities=14% Similarity=0.165 Sum_probs=114.3
Q ss_pred cceeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 45 DYYSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 45 ~~~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
+++...+.++|+ +.++++.+|.-.++.....+... .+.-...+|.+.+ .+|+-..+++|.|+.--+.+...
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-------cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence 445778888885 58888999999999854443221 2234578899855 46666668889997433333333
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.++. ...+..+- .|.+|...+.+ .|.+||+.+++. +..+.. .+|..+.|++++++++..+.+ .+.+++..
T Consensus 104 ~i~~-~~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~-i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 104 SIKL-PFSVEKIF----GGNLLGVKSSD-FICFYDWETGKL-IRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -----SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--E-EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred EEcC-CcccceEE----cCcEEEEECCC-CEEEEEhhHcce-eeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 3432 12233332 37777776655 899999997764 554432 248999999999999998865 57777644
Q ss_pred CC--------CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcc
Q 040533 204 KM--------SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275 (364)
Q Consensus 204 ~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 275 (364)
.. ........+..-...|.+..|..+ .++.+. .+.++. +..|+.-.......++.-+.+.+...
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT----~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~ 245 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT----SNHLKY--LVNGETGIIAHLDKPLYLLGYLPKEN 245 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-----TTEEEE--EETTEEEEEEE-SS--EEEEEETTTT
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc----CCeEEE--EEcCCcceEEEcCCceEEEEEEccCC
Confidence 32 000123333333678999999876 455543 236766 44454433323345566666666545
Q ss_pred ceeeeccCCccCCCCeEEEeeCC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
.++.... ++.+..+.+.
T Consensus 246 ~ly~~Dr------~~~v~~~~ld 262 (443)
T PF04053_consen 246 RLYLIDR------DGNVISYELD 262 (443)
T ss_dssp EEEEE-T------T--EEEEE--
T ss_pred EEEEEEC------CCCEEEEEEC
Confidence 5554422 5566665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00028 Score=60.85 Aligned_cols=229 Identities=17% Similarity=0.207 Sum_probs=129.1
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCC----------------CCCceEEEEcCCCCEEEEEecC-
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGE----------------DDFPTSISWSQDAKTLAVGYMA- 108 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~d- 108 (364)
......|+|+ +.++...++.|++++..+++..++.. .+. -+.-..+-||||+++||....|
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence 3666788986 58888889999999988876544433 120 1233678899999999886532
Q ss_pred Cc-----------------------------------EEEEecCCcceeee-e----ecCCCcEEEEEeecCCCCEEEEe
Q 040533 109 SK-----------------------------------LQLWDAETSKLIRN-L----EGHDKRVATASWNHWNGHILTSG 148 (364)
Q Consensus 109 g~-----------------------------------i~iw~~~~~~~~~~-~----~~~~~~v~~~~~~~~~~~~l~~~ 148 (364)
.. +.|+|+.+++.... . ......+..+.|.+ ++..|+..
T Consensus 123 ~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~ 201 (353)
T PF00930_consen 123 REVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQ 201 (353)
T ss_dssp TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEE
T ss_pred cCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEE
Confidence 11 34445544443211 1 12344677888988 66633333
Q ss_pred --eCCC---cEEEEEcccCcceeeeeecccCcE---EEEEEc-CCCC-EEEEEeCCCeEEE--EeCCCCCCCcceEEecc
Q 040533 149 --SQDK---SIINHDVRVSNNVTSRINAHTAEV---CGLKWS-NEGN-LLASGGDDNLVHV--WDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 149 --~~dg---~i~~~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~-~l~~~~~d~~i~i--wd~~~~~~~~~~~~~~~ 216 (364)
.++. .+.++|..++.............| ....|. +++. ++.....+|.-++ ++.... ....+..
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~ 277 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTS 277 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceecccc
Confidence 3332 466677766553222222222222 244554 5544 5555557775444 454332 2344544
Q ss_pred ccccee-EEEEccCCCcEEEeecC--CCCCeEEEEECCCCeEEEEEecCCCe-EEEEEcCCccceeeec
Q 040533 217 HRAAVK-ALAWCPYQFNVLASGGG--TQDGCIKIWNVQKGTCIHSVDTKAQI-CGLEWNRHHKEILSGH 281 (364)
Q Consensus 217 ~~~~v~-~~~~~~~~~~~~~~~~g--~~d~~i~i~d~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~ 281 (364)
..-.|. -+.+++++..++.++.+ .....|...++..+.....+...... ..+.|||++++++...
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 455564 47788888888777752 12346777777734445555555444 4999999999988654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00011 Score=68.07 Aligned_cols=144 Identities=15% Similarity=0.183 Sum_probs=100.8
Q ss_pred CCEEEEE-ecCCcEEEEecCCcceeeeeecCCCc-EEEEEee----cCCCCEEEEeeCCCcEEEEEcccCcceeeeee--
Q 040533 99 AKTLAVG-YMASKLQLWDAETSKLIRNLEGHDKR-VATASWN----HWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-- 170 (364)
Q Consensus 99 ~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~----~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-- 170 (364)
.++|+.- .....|+-.|++.|+.+.....+... |..++=. ..+...-+.|-.+..+..||.+.....+..-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999999877654 5544321 11234556777888999999987542121111
Q ss_pred --cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEE
Q 040533 171 --AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 171 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
.......|++-+.+| +||+|+.+|.|++||--. .+.-..+.+-..+|..|..+.||+++|+|+ +..+.++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi 644 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLI 644 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEE
Confidence 233456788877777 799999999999999322 122334556678999999999999999986 6788888
Q ss_pred EC
Q 040533 249 NV 250 (364)
Q Consensus 249 d~ 250 (364)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 86
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.1e-06 Score=72.04 Aligned_cols=95 Identities=17% Similarity=0.279 Sum_probs=80.6
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE-EEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA-TASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..++..++ +++|.| +|+.|+.|-.||+|++.|++++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457789999999999999999999999988 777888887888888 999999 8999999999999999999988765
Q ss_pred eeeeecccCcEEEEEEcC
Q 040533 166 TSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~ 183 (364)
......-...|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 544444556788888864
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00083 Score=53.90 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=114.1
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.+-...+.++.|+|+.+.|++......-.|+=..+|+.++++.-. -.....+.+.. ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 355666999999999999988887777777777788988876521 22344567775 6777777677888888877654
Q ss_pred cceee---------eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc-------ccceeEEEE
Q 040533 163 NNVTS---------RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH-------RAAVKALAW 226 (364)
Q Consensus 163 ~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~v~~~~~ 226 (364)
..... .....+.....++|.|....|..+-+..-+.||.+......-.......+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 32111 11112556788999998888888888887888776543221111111111 234678889
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
++....+++-+. +++.+.-.|.. |..+..+
T Consensus 241 ~~~~~~LLVLS~--ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 241 NAITNSLLVLSD--ESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCCCCcEEEEec--CCceEEEEecC-CCeeeeE
Confidence 987778888765 77777777764 4444443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0048 Score=56.12 Aligned_cols=284 Identities=11% Similarity=0.064 Sum_probs=155.2
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCC--Cc-------eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDD--FP-------TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--~v-------~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+-+|..+++..=......... .. ..+++ .+..++.++.++.+.-.|.++|+.+....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 345666677899999999998643333211111 00 01122 23467778889999999999999887654
Q ss_pred cC--C--CcEEE-EEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeeccc----------------------
Q 040533 127 GH--D--KRVAT-ASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINAHT---------------------- 173 (364)
Q Consensus 127 ~~--~--~~v~~-~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~---------------------- 173 (364)
.. . ..+.+ .... ++ .++.+. .+|.|..+|.++++.+-.......
T Consensus 148 ~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 21 1 01111 1111 34 444443 268899999988775433111110
Q ss_pred --------CcE-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEeCCCCCCCcceEEecccccce-------
Q 040533 174 --------AEV-CGLKWSNEGNLLASGGDD-----N-----------LVHVWDHSKMSSSKCLHRFRDHRAAV------- 221 (364)
Q Consensus 174 --------~~v-~~~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~~~~~~~~v------- 221 (364)
..+ ..+++.|+..+++.+... + .|.-.|+++++. .-.++.....+
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~---~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI---KWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE---EEeeeCCCCCCccccCCC
Confidence 011 124566655666665522 1 455556555432 33332211111
Q ss_pred --eEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEec------------C--CC-------------------
Q 040533 222 --KALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDT------------K--AQ------------------- 264 (364)
Q Consensus 222 --~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------------~--~~------------------- 264 (364)
.-+....+++ .+++.+. .+|.+.+.|.++|+.+...+. . .+
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~ 379 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGV 379 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEE
Confidence 1122223454 4666655 899999999999988622100 0 00
Q ss_pred ---------eEEEEEcCCccceeeeccCC---------------------------ccCCCCeEEEeeCCCCceeeeccc
Q 040533 265 ---------ICGLEWNRHHKEILSGHGFS---------------------------SSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 265 ---------v~~~~~~~~~~~l~~~~~~~---------------------------~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
-..++++|+..++++..... ....-+.|.-+|+.+++..-+.+.
T Consensus 380 ~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~ 459 (527)
T TIGR03075 380 CPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKE 459 (527)
T ss_pred CCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecC
Confidence 01255666655555432210 001235688888888888776653
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
......+. ..-.+.+++.++.||.++.+|.++++.+..+..
T Consensus 460 ~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 460 DFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 22111121 112455777888899999999999998876653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=70.10 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee-EEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL-ELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
...+..+.|+|.-..+|.+.. +|.+.+..+. .+.+.++..|...++ +++|.|||+.||.|-.||+|++.|++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~------~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTE------KGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccchhheecc------CCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 456888999999999998865 8999999888 888888887777777 99999999999999999999999999
Q ss_pred CCCCCccee-ccCCceeeeeeccC
Q 040533 341 GPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 341 ~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
++..+..+. .....|.++-|+|.
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWDRI 116 (665)
T ss_pred CCCceeccccccccchheeecccc
Confidence 998877632 34667888888753
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0028 Score=56.22 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=110.9
Q ss_pred EEEEEeecCCCCEEEEe-eCCC----cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-----------C
Q 040533 132 VATASWNHWNGHILTSG-SQDK----SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-----------N 195 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~-~~dg----~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~ 195 (364)
+....++| ++++++.+ +..| .++++|+.+++.+...+.... ...+.|.++++.|+....+ .
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 44677899 88877755 4444 599999998865433333221 1239999998877665533 2
Q ss_pred eEEEEeCCCCCCCcceEEecccccc--eeEEEEccCCCcEEEeecCCCC-CeEEEEECCCC-----eEEEEEecCCCe-E
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAA--VKALAWCPYQFNVLASGGGTQD-GCIKIWNVQKG-----TCIHSVDTKAQI-C 266 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~-----~~~~~~~~~~~v-~ 266 (364)
.|+.|++.+.... -...+...... ...+..+++++++++......+ ..+.+.|+..+ ...........+ .
T Consensus 203 ~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 4788887665332 12333332222 5678899999888875543344 67999999875 333333333333 3
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce---eeecccccc--ceeEEeecCCCCEEE-EEeCCC--cEEEEE
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---WGELQHQTS--RILELSQSPDGLTVV-SAAADE--TLRFWE 338 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~--~i~~i~~~~~~~~l~-~~~~dg--~i~vw~ 338 (364)
.+... .+.+++... -....+.|.-.++..... ...+..+.. .+..+.. .+.+|+ ....++ .|++++
T Consensus 282 ~v~~~-~~~~yi~Tn---~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 282 YVDHH-GDRLYILTN---DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEE-TTEEEEEE----TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEE
T ss_pred EEEcc-CCEEEEeeC---CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEE
Confidence 44444 443443332 124467888888887663 224444544 3445544 444444 444454 377788
Q ss_pred ee
Q 040533 339 AF 340 (364)
Q Consensus 339 ~~ 340 (364)
+.
T Consensus 356 ~~ 357 (414)
T PF02897_consen 356 LD 357 (414)
T ss_dssp TT
T ss_pred CC
Confidence 77
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.005 Score=54.10 Aligned_cols=194 Identities=9% Similarity=0.098 Sum_probs=102.3
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee-------eecCCCcEEEEEee
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN-------LEGHDKRVATASWN 138 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~~~v~~~~~~ 138 (364)
.|.+|+...... ....... +.|.++.|+.+.+ |++-..||.+++||+. |+.... ..-....+....+.
T Consensus 62 ~I~iys~sG~ll-~~i~w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKLL-SSIPWDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCEe-EEEEECC--CCEEEEEECCCCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC
Confidence 589998765543 3444433 7899999998655 4455589999999986 333111 11111222222332
Q ss_pred cCCCCEEEEeeCCCcEEEEEcccCcceeeeee---c-----ccC-cEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 040533 139 HWNGHILTSGSQDKSIINHDVRVSNNVTSRIN---A-----HTA-EVC-GLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 139 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~-----~~~-~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 208 (364)
. +|-.++ ..++.+.+..-.........+. . +.. ... -..++.+....+....++.+.+.+-...
T Consensus 137 ~-~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 137 K-NGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred C-CCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 2 342222 3344444332111110001110 0 000 000 0224444444555555556664442211
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccce
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEI 277 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l 277 (364)
..+. ..+++..++.||+++.+.... .+|.+.+.+..-.+....+... .....+.|..+...+
T Consensus 211 ---~~i~-~~~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 211 ---KQID-SDGPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred ---cccc-CCCCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 1111 246899999999997655543 5899999887666666666655 567788887664433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00044 Score=64.31 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-----CCCEEEEEecCCcEEEEecCCc--ceeee-ee--cCCCcEE
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-----DAKTLAVGYMASKLQLWDAETS--KLIRN-LE--GHDKRVA 133 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iw~~~~~--~~~~~-~~--~~~~~v~ 133 (364)
.+.|+-.|++.|+++....+.. ..+|..++-.. +....+.|-.+..+..||.+-. +++.. .. .......
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4789999999999877666522 23344443221 1234566777889999998743 22211 10 1344567
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
|++-+ ...+||+|+.+|.|++||- .+......+.+...+|..|..+.||++++..+ +..+.+++.
T Consensus 582 ~~aTt--~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATT--EDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEec--CCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 77665 5568999999999999994 34444566777789999999999999888666 556777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0039 Score=51.76 Aligned_cols=232 Identities=13% Similarity=0.173 Sum_probs=110.2
Q ss_pred cceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeec-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-ccee
Q 040533 45 DYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVT-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-SKLI 122 (364)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~ 122 (364)
++....+.+..+...+++..+.| +...+.++.=....+. .-......+....++..+++ +..|. ||...+ |+.-
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~--iy~T~DgG~tW 136 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPGLL-LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGA--IYRTTDGGKTW 136 (302)
T ss_dssp --EEEEEEEETTEEEEEEETTEE-EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT----EEEESSTTSSE
T ss_pred eeeEEEEEecCCceEEEcCCceE-EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCc--EEEeCCCCCCe
Confidence 34566677766655666666643 3334444322222111 11233344444444433333 34454 333333 3322
Q ss_pred -eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 123 -RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 123 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
.....-...+..+..++ ++.+++++.......-||.-... -......-...|..|.|.|++.+.+.+ ..|.|+.=+
T Consensus 137 ~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp EEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred eEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 22334456788888888 99988888766666677753221 122223346789999999998776654 788888876
Q ss_pred CCC-CCC-CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec----CCCeEEEEEcCCcc
Q 040533 202 HSK-MSS-SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----KAQICGLEWNRHHK 275 (364)
Q Consensus 202 ~~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~v~~~~~~~~~~ 275 (364)
... .+. .+.+.......-.+..++|.+++ .+.++|+ .|. .+.....|+.-+.... ...+..+.|.++.+
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg---~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGG---SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeC---Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 211 110 01111111122347889999876 6677665 553 3445566665555432 35588899888777
Q ss_pred ceeeeccCCccCCCCeEEEe
Q 040533 276 EILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~ 295 (364)
-++.|. +|.|.-|
T Consensus 289 gf~lG~-------~G~ll~~ 301 (302)
T PF14870_consen 289 GFVLGQ-------DGVLLRY 301 (302)
T ss_dssp EEEE-S-------TTEEEEE
T ss_pred eEEECC-------CcEEEEe
Confidence 777764 7776544
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0013 Score=57.10 Aligned_cols=212 Identities=15% Similarity=0.156 Sum_probs=111.9
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc------------------------------------------eeee
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIINHDVRVSNN------------------------------------------VTSR 168 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------------------------------------------~~~~ 168 (364)
.|+.+.|.+ +...|++|...|.|.+|.....+. +...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 478888988 777888888899988886643211 1112
Q ss_pred eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE--ecc------cccceeEEEEcc-----CC--CcE
Q 040533 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR--FRD------HRAAVKALAWCP-----YQ--FNV 233 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~--~~~ 233 (364)
+....++|++++.|.-| ++|.|.++|.+.|.|+|.+.. +.. +.. ....++++.|.- |+ .-+
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPav---I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAV---IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEE---EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeE---EeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 23346789999998655 999999999999999986432 332 111 234577787751 22 124
Q ss_pred EEeecCCCCCeEEEEECCC---CeE----EEEE-ecCCCeEEEE-EcCCccceeeec--------------cCCccCCCC
Q 040533 234 LASGGGTQDGCIKIWNVQK---GTC----IHSV-DTKAQICGLE-WNRHHKEILSGH--------------GFSSSGDGQ 290 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~---~~~----~~~~-~~~~~v~~~~-~~~~~~~l~~~~--------------~~~~~~~~~ 290 (364)
+.+|. ..|.+.+|.+.- +.. .... ...+++..+. ++.+...-+.+. ++.....+.
T Consensus 158 L~vGT--n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 158 LLVGT--NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp EEEEE--TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred EEEEe--CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 44543 789999998741 211 1111 2334554443 322211100000 000112288
Q ss_pred eEEEeeCCCCceeeeccccccceeEEee-----cCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 291 KLCLWKYPHMTKWGELQHQTSRILELSQ-----SPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~-----~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.++++...+.+...+.....-....+.+ ...+..|++-..+|.|+++.+..-+.+....
T Consensus 236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 8999999887776654422222333444 2356678888999999999988766655443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0058 Score=51.07 Aligned_cols=218 Identities=15% Similarity=0.139 Sum_probs=124.9
Q ss_pred ccCCCcc--EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 51 MDWGRNN--ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 51 ~~~~~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
-.|.++. ++-+. ..+.|.-|+..+++.. .+. +.+.+.++..-..+..|+++. .-+.+++.+++.....+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~---~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP---SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE---CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 3455543 33332 4689999998877643 222 233445555544555555553 3377777766655333221
Q ss_pred -----CCCcEEEEEeecCCCCEEEEeeC-----C----CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC
Q 040533 128 -----HDKRVATASWNHWNGHILTSGSQ-----D----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 128 -----~~~~v~~~~~~~~~~~~l~~~~~-----d----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
.....+.+...| ++.+.++... . ..-.+|.+.......+....+-..-+.++||||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 123455677777 7766655433 0 111344444223335555555566688999999987777765
Q ss_pred C-CeEEEEeCCC--CCCCc--ceEEecccccceeEEEEccCCCcEEEeecCCCC-CeEEEEECCCCeEEEEEecC-CCeE
Q 040533 194 D-NLVHVWDHSK--MSSSK--CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD-GCIKIWNVQKGTCIHSVDTK-AQIC 266 (364)
Q Consensus 194 d-~~i~iwd~~~--~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~~~~~~~~~~-~~v~ 266 (364)
. +.|.-|++.. ..... ....+....+..-.++...+| ++.+++. .. +.|..|+.. ++.+..+..+ ..++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~--~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAV--WGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecc--cCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 4 7788887652 11111 122222334556677888888 4443332 23 389999988 9999888877 6677
Q ss_pred EEEEcC-Cccceee
Q 040533 267 GLEWNR-HHKEILS 279 (364)
Q Consensus 267 ~~~~~~-~~~~l~~ 279 (364)
+++|-- +.+.|++
T Consensus 259 ~~~FgG~~~~~L~i 272 (307)
T COG3386 259 NPAFGGPDLNTLYI 272 (307)
T ss_pred cceEeCCCcCEEEE
Confidence 777753 3344433
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0027 Score=53.01 Aligned_cols=213 Identities=11% Similarity=0.048 Sum_probs=119.1
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
.|.+..+.++.+--..+.|.-|+..++.. ..+.. ...+.++..-..+..|+++. . -+.+++.........+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~~-p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK--RVFPS-PGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEEC-CCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEecccc
Confidence 56673334556666778888888876653 22322 23334443333444555443 3 36666664332211111111
Q ss_pred -c-cccceeEEEEccCCCcEEEeec-----C---CCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCC
Q 040533 216 -D-HRAAVKALAWCPYQFNVLASGG-----G---TQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 216 -~-~~~~v~~~~~~~~~~~~~~~~~-----g---~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
+ .....+.+...|+|...+.+.+ - ..-|.|+.+|. .+..++.+.. -..-+.++|||+++.++....
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT-- 182 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT-- 182 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC--
Confidence 1 1234567888899855544432 0 11244444444 4555555544 345688999999998887752
Q ss_pred ccCCCCeEEEeeCCC--Cce-----eeeccccccceeEEeecCCCCEEEEEeCCC-cEEEEEeeCCCCCcceeccCCcee
Q 040533 285 SSGDGQKLCLWKYPH--MTK-----WGELQHQTSRILELSQSPDGLTVVSAAADE-TLRFWEAFGPSGSGDFVSHLDGLL 356 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~--~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~v~ 356 (364)
..+.|.-|++.. +.. ...+....+..-.++...+|.+.+++-.+| .|.+|+.. ++++..+..+...++
T Consensus 183 ---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 183 ---PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred ---CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 357788887752 111 111222334556678888888776555554 89999988 777776665545566
Q ss_pred eeee
Q 040533 357 SLKV 360 (364)
Q Consensus 357 ~~~~ 360 (364)
+++|
T Consensus 259 ~~~F 262 (307)
T COG3386 259 NPAF 262 (307)
T ss_pred cceE
Confidence 6665
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0036 Score=53.38 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=87.3
Q ss_pred CeEEEEECCCC-----ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-eeeeee-cCCCcEEEEEe
Q 040533 65 LELYLWKQENG-----EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LIRNLE-GHDKRVATASW 137 (364)
Q Consensus 65 ~~i~iw~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~-~~~~~v~~~~~ 137 (364)
|.|.++++... +...+... ...++|++++-- ++ +|+++. ++.|.+|++...+ ....-. .....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 33333332 457889998866 34 455554 5899999998877 443322 12335666665
Q ss_pred ecCCCCEEEEeeCCCcEEEEEcccCcc-eeeee-ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 138 NHWNGHILTSGSQDKSIINHDVRVSNN-VTSRI-NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 138 ~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+++++.|+....+.++..+.... +...- ......++++.|-++++.++.+..+|.+.++...
T Consensus 138 ---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 138 ---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 567999999888888886654332 22222 2234568888888666799999999999999875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.6e-05 Score=42.42 Aligned_cols=38 Identities=29% Similarity=0.533 Sum_probs=33.1
Q ss_pred ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 301 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.013 Score=50.12 Aligned_cols=236 Identities=17% Similarity=0.239 Sum_probs=116.6
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcce---eeee----ecCCCcEEEEEeecC---CCCEEEEeeCC-------
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKL---IRNL----EGHDKRVATASWNHW---NGHILTSGSQD------- 151 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~l~~~~~d------- 151 (364)
..+.|+|.|||+++++ ...|.|++++ ..+.. +..+ .........++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999987765 4699999999 44443 2222 224567889999982 23334433321
Q ss_pred -CcEEEEEcccC-------cceeeeeec---ccCcEEEEEEcCCCCEEEEEeCCC-------------eEEEEeCCCCC-
Q 040533 152 -KSIINHDVRVS-------NNVTSRINA---HTAEVCGLKWSNEGNLLASGGDDN-------------LVHVWDHSKMS- 206 (364)
Q Consensus 152 -g~i~~~d~~~~-------~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~iwd~~~~~- 206 (364)
..|.-|..... +.++..... ....-..|.|.|+|.+.++.+..+ .|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444333 111222222 234456799999997666655432 23333322100
Q ss_pred ----------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-----------------------
Q 040533 207 ----------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG----------------------- 253 (364)
Q Consensus 207 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----------------------- 253 (364)
....+. -.++. ....++|+|....++++-.| .++.=.|--+..+
T Consensus 161 ~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 000010 11222 23578999983355554322 2322222222211
Q ss_pred ------eEEEEEecCCCeEEEEEcCC-------ccceeeeccCCccCCCCeEEEeeCCCCceeee----ccccccceeEE
Q 040533 254 ------TCIHSVDTKAQICGLEWNRH-------HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE----LQHQTSRILEL 316 (364)
Q Consensus 254 ------~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~----~~~~~~~i~~i 316 (364)
.+...+..+..+..+.|... |.++++... .+.|....+.....+.. +......+..+
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v 311 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG------GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV 311 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT------TTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCC------CCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence 12223334445666666543 334444332 56777777654433221 22344478999
Q ss_pred eecCCCCEEEEEeCCCcEE
Q 040533 317 SQSPDGLTVVSAAADETLR 335 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~ 335 (364)
++.|||.+.++.+.+|.|+
T Consensus 312 ~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTSEEEEEE-TTTTEE
T ss_pred EEcCCCeEEEEECCCCeEe
Confidence 9999999888888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0031 Score=43.09 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=67.8
Q ss_pred ceEEEEcC---CC-CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 90 PTSISWSQ---DA-KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 90 v~~~~~s~---~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
|+++++.. || +.|++|+.|..|++|+- .+.+..+.. ...|.+++-.. ...++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~Rl-- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDRSQRL-- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeCccee--
Confidence 56666654 33 58999999999999974 466677764 45677777664 5789999999999999853221
Q ss_pred eeeeecccCcEEEEEEcC-C--C-CEEEEEeCCCeEE
Q 040533 166 TSRINAHTAEVCGLKWSN-E--G-NLLASGGDDNLVH 198 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~d~~i~ 198 (364)
.+ .+ .+..+.++++.. + | ..|++|-.+|.|-
T Consensus 75 WR-iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WR-IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee-ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22 22 223366665544 3 2 3688888888764
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0092 Score=51.79 Aligned_cols=82 Identities=9% Similarity=-0.048 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc-eeEEeecC---C--------------CCE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR-ILELSQSP---D--------------GLT 324 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~---~--------------~~~ 324 (364)
..+.+++.+|.+++.++... -|.|.++|+.++..++.+++-.+. +.-+.... . ..+
T Consensus 308 R~~~~i~~sP~~~laA~tDs------lGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDS------LGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEEcC------CCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 45788999999998888744 799999999999888877764321 11111100 0 112
Q ss_pred -EEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 325 -VVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 325 -l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
++-+-.-|.|.||.+..+..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 33456689999999999988777653
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0046 Score=56.73 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=104.8
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe------cCC--cEEEEecCCcceeeeeecCC
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY------MAS--KLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg--~i~iw~~~~~~~~~~~~~~~ 129 (364)
+.+.. +|.+.-.+- +....+-...+....+.+.+++|+|+.+|... .|. .|.+++. .+.. ..+.. .
T Consensus 323 ~~~v~-~G~l~~~~~--~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g 396 (591)
T PRK13616 323 LHALV-DGSLVSVDG--QGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-G 396 (591)
T ss_pred ceEEE-CCeEEEecC--CCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-C
Confidence 44444 676655442 22222222223334678999999999887765 243 4555554 2222 33322 2
Q ss_pred CcEEEEEeecCCCCEEEEeeCC------------CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 130 KRVATASWNHWNGHILTSGSQD------------KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
...+.-.|+| ++..+++.... +.+.+.+++.+.. .. .....|..+.|||||..++... ++.|
T Consensus 397 ~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v 470 (591)
T PRK13616 397 HSLTRPSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKV 470 (591)
T ss_pred CCCCCceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEE
Confidence 2478889999 87766665432 2333334432221 11 3356799999999999888766 5777
Q ss_pred EEEeCCCCCCCc-ce---EEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEE
Q 040533 198 HVWDHSKMSSSK-CL---HRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLE 269 (364)
Q Consensus 198 ~iwd~~~~~~~~-~~---~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~ 269 (364)
++=-+.....+. .+ ..+.. -...+.++.|.+++. +++... ..+..+...++... ....+.. ..++..++
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~-~~~~~~~~n~~~~v~~va 547 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGS-NSDALPSRNLSAPVVAVA 547 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCCE-EEEEec-CCCCceEEEecCCc-cccccCCCCccCceEEEe
Confidence 773222211111 11 11222 233468899999885 443322 13344544455422 2222122 34566666
Q ss_pred EcC
Q 040533 270 WNR 272 (364)
Q Consensus 270 ~~~ 272 (364)
-++
T Consensus 548 a~~ 550 (591)
T PRK13616 548 ASP 550 (591)
T ss_pred cCC
Confidence 665
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0005 Score=59.38 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=99.7
Q ss_pred CCCEE-EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCC-------EEEEeeCCCcEEEEEcccCcc-eeee
Q 040533 98 DAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH-------ILTSGSQDKSIINHDVRVSNN-VTSR 168 (364)
Q Consensus 98 ~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~l~~~~~dg~i~~~d~~~~~~-~~~~ 168 (364)
+.++| ..+.....++-.|++.|+.+.....+.. |.-+.+.| +.. .-+.|-.+..|.-||++-... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 34444 4455556788899999999998887665 77777776 332 234566788899999986553 2222
Q ss_pred eeccc----CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 169 INAHT----AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 169 ~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
.++|. ....|.+-..+| ++++|+.+|.|++||--.. +.-..+.+-..+|..+..+.+|+++++|+ +..
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~---~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~ty 493 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR---RAKTALPGLGDAIKHVDVTADGKWILATC----KTY 493 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh---hhhhcccccCCceeeEEeeccCcEEEEec----ccE
Confidence 23332 234566555565 8999999999999995221 22334566788999999999999999885 678
Q ss_pred EEEEECC
Q 040533 245 IKIWNVQ 251 (364)
Q Consensus 245 i~i~d~~ 251 (364)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 8888764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.01 Score=54.57 Aligned_cols=185 Identities=10% Similarity=0.123 Sum_probs=103.2
Q ss_pred CcEEEEEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC---------
Q 040533 130 KRVATASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD--------- 194 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 194 (364)
..+...+.+| +++.++... .|+.-.+|-...+........+ .....-.|+|+|..+++....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678889999 887776654 2443344433223322222222 237788999998877777533
Q ss_pred ---CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEE---EECCCCeE-E---EEEec--C
Q 040533 195 ---NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI---WNVQKGTC-I---HSVDT--K 262 (364)
Q Consensus 195 ---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i---~d~~~~~~-~---~~~~~--~ 262 (364)
+.+.+.+++.... .. .....|..+.|+|||..+++.. ++.|.+ -....|.. + ..+.. .
T Consensus 427 ~~~gql~~~~vd~ge~---~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 427 PATGQLARTPVDASAV---AS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred CCCceEEEEeccCchh---hh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence 2222223322111 11 2245799999999998888775 467777 55445541 1 11211 2
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccceeEEeecCCCCEEEEEeCCCcEE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRILELSQSPDGLTVVSAAADETLR 335 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~ 335 (364)
..+..+.|.+++.+++.. . +.+..+...++..... ..+.. ...++..++-+++ .++....+|.+.
T Consensus 497 ~~~~~l~W~~~~~L~V~~-~----~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 497 DTAVSLDWRTGDSLVVGR-S----DPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred CccccceEecCCEEEEEe-c----CCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 336889999999965432 2 2244455555543222 22222 2456777777763 466666666433
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.014 Score=46.81 Aligned_cols=212 Identities=11% Similarity=0.122 Sum_probs=125.7
Q ss_pred cEEEEEeecCCCCEEEEeeCCCc-EEEEEcccCcceeeeeecccCc--EEEEEEcCCCCEEEEEeCC-----CeEEEEeC
Q 040533 131 RVATASWNHWNGHILTSGSQDKS-IINHDVRVSNNVTSRINAHTAE--VCGLKWSNEGNLLASGGDD-----NLVHVWDH 202 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----~~i~iwd~ 202 (364)
.-..++|+|....-++.+-.-|+ ..++|....+.+.... ..++. --.-.|||||.+|+..-.| |.|-+||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 34557788866666776666665 4578887666433322 11111 1123589999988876443 78999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecC---------------CCCCeEEEEECCCCeEEEEEecC-----
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG---------------TQDGCIKIWNVQKGTCIHSVDTK----- 262 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g---------------~~d~~i~i~d~~~~~~~~~~~~~----- 262 (364)
+.. .+.+-.+..|.-....+.|.+||+.+++..+| +..-++.+.|..+|+.+.+....
T Consensus 148 r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 148 REG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 853 34466667777777889999999766665431 12334566666677666554332
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-------cccceeEEeecCCCCEEEEEeCC-CcE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-------QTSRILELSQSPDGLTVVSAAAD-ETL 334 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~d-g~i 334 (364)
..+..++..++|..++... |.-..+|---.+=-...++++.-+.. ....|-+|+.+.+..+++..+-. +..
T Consensus 226 lSiRHld~g~dgtvwfgcQ-y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQ-YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred cceeeeeeCCCCcEEEEEE-eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 4577888888887665432 21111111111112223343333321 23457788887766666655544 557
Q ss_pred EEEEeeCCCCCc
Q 040533 335 RFWEAFGPSGSG 346 (364)
Q Consensus 335 ~vw~~~~~~~~~ 346 (364)
.+||..++..+.
T Consensus 305 vi~da~tG~vv~ 316 (366)
T COG3490 305 VIWDAATGAVVS 316 (366)
T ss_pred EEEEcCCCcEEe
Confidence 889999987643
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0076 Score=55.28 Aligned_cols=222 Identities=13% Similarity=0.171 Sum_probs=116.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-C-----cEEEEecCCcceee--eeecCCCcEEEEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-S-----KLQLWDAETSKLIR--NLEGHDKRVATAS 136 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g-----~i~iw~~~~~~~~~--~~~~~~~~v~~~~ 136 (364)
..+..||..+++......+.... .-.+++.. ++...++|+.| | ++..||..+++... .+...........
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 47889999998777666664333 33445544 45778888888 3 57888887776433 2222222222233
Q ss_pred eecCCCCEEEEeeCCCc-----EEEEEcccCcceeeeeecccCcEEEEEEc-CCCCEEEEEeCCC------eEEEEeCCC
Q 040533 137 WNHWNGHILTSGSQDKS-----IINHDVRVSNNVTSRINAHTAEVCGLKWS-NEGNLLASGGDDN------LVHVWDHSK 204 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~------~i~iwd~~~ 204 (364)
. ++.+.++|+.||. +-.||..+.+- .............+.. -+|.+.++|+.++ .+..||..+
T Consensus 379 l---~g~iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 L---DGKLYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred E---CCEEEEEeccccccccccEEEecCCCCcc--cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 3 8999999999974 77788776652 1111111122222222 2677888887554 467788665
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC-----eEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG-----CIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-----~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
... ..+..+........ ++.- +..+++.|| .|+ +|..||..+.+-...-....+.........+..+++
T Consensus 454 ~~W-~~~~~M~~~R~~~g-~a~~--~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 454 NTW-TLIAPMNTRRSGFG-VAVL--NGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYA 527 (571)
T ss_pred Cce-eecCCcccccccce-EEEE--CCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEE
Confidence 432 22222221122222 2222 236888876 554 377788877654433222222222222222222222
Q ss_pred eccCCccCCCCeEEEeeCCC
Q 040533 280 GHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~ 299 (364)
..++.....-++|..||..+
T Consensus 528 vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EecccCccccceeEEcCCCC
Confidence 22233333445566666544
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.034 Score=50.71 Aligned_cols=245 Identities=13% Similarity=0.135 Sum_probs=131.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEec------CCcEEEEecCCcceeeeeec
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYM------ASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.++.++.++.|.-+|.++|+..-......+... ..+.-+| .+..++++.. +|.|.-+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4567777889999999999987544433222110 1111122 1234555542 68899999999988765432
Q ss_pred CCC-------------------------------cEE-EEEeecCCCCEEEEeeCC-----C-----------cEEEEEc
Q 040533 128 HDK-------------------------------RVA-TASWNHWNGHILTSGSQD-----K-----------SIINHDV 159 (364)
Q Consensus 128 ~~~-------------------------------~v~-~~~~~~~~~~~l~~~~~d-----g-----------~i~~~d~ 159 (364)
-.. .+. .+++.| ...++..+..+ + .|.-.|+
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 111 111 235555 45555554421 2 5666777
Q ss_pred ccCcceeeeeec--cc-------CcEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCCCCcc---e--EEe----cccc
Q 040533 160 RVSNNVTSRINA--HT-------AEVCGLKWSNEGN---LLASGGDDNLVHVWDHSKMSSSKC---L--HRF----RDHR 218 (364)
Q Consensus 160 ~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~---~--~~~----~~~~ 218 (364)
++++..- .++. |. ....-+....+|+ .++.+..+|.+++.|-++++.... . ... ....
T Consensus 279 ~TG~~~W-~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 279 DTGKIKW-HYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred ccCCEEE-eeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 7776422 2222 21 1112223334665 788899999999999876543100 0 000 0000
Q ss_pred ---------------------------cc--eeEEEEccCCCcEEEeecC------------------------------
Q 040533 219 ---------------------------AA--VKALAWCPYQFNVLASGGG------------------------------ 239 (364)
Q Consensus 219 ---------------------------~~--v~~~~~~~~~~~~~~~~~g------------------------------ 239 (364)
+. -..++++|+...+++-...
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 00 0124566654333322110
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
..-|.|.-+|+.+++..-..+...+...-...-.+..++.+ ..+|.++.+|.++++.+.+.+-.
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g------~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYG------TLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEE------CCCCeEEEEECCCCCEeEEEeCC
Confidence 01356888888888888776544332111111233344444 34999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0069 Score=55.63 Aligned_cols=231 Identities=8% Similarity=0.055 Sum_probs=112.0
Q ss_pred cEEEEecCCcceee--eeecCCCcEEEEEeecCCCCEEEEeeCC------CcEEEEEcccCcce-eeeeecccCcEEEEE
Q 040533 110 KLQLWDAETSKLIR--NLEGHDKRVATASWNHWNGHILTSGSQD------KSIINHDVRVSNNV-TSRINAHTAEVCGLK 180 (364)
Q Consensus 110 ~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~-~~~~~~~~~~v~~~~ 180 (364)
.+..||..+++... .+...... .+++. - ++.+++.|+.+ ..+..||+.+..-. ...+....... +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence 46778887765332 22211111 12222 2 77788888754 24778887765421 11111111111 222
Q ss_pred EcCCCCEEEEEeCCC-----eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC-------------
Q 040533 181 WSNEGNLLASGGDDN-----LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD------------- 242 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d------------- 242 (364)
.-++++.+.||.++ .+..||..+... ..+..+.........+.. ++ .+.+.|| .+
T Consensus 349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W-~~~~~mp~~r~~~~~~~~--~g-~IYviGG--~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKW-KMLPDMPIALSSYGMCVL--DQ-YIYIIGG--RTEHIDYTSVHHMNS 421 (557)
T ss_pred -EECCEEEEECCcCCCCCCceEEEEECCCCeE-EECCCCCcccccccEEEE--CC-EEEEEeC--CCccccccccccccc
Confidence 22577778887654 478899765422 212222111111112222 23 6777775 32
Q ss_pred ----------CeEEEEECCCCeEEEE--EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC---Cceeeecc
Q 040533 243 ----------GCIKIWNVQKGTCIHS--VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH---MTKWGELQ 307 (364)
Q Consensus 243 ----------~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~ 307 (364)
..+..||..+.+-... +.....-.+++. -+++..+.|+.-........+..||..+ ...+..+.
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 3577788776543322 111111112222 2344444442100000123577899876 33344444
Q ss_pred ccccceeEEeecCCCCEEEEEeCCC--cEEEEEeeCCCCCcceeccCCc
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADE--TLRFWEAFGPSGSGDFVSHLDG 354 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~ 354 (364)
........+.+ +|++.++|+.|| .+..||..+.+-......|.+.
T Consensus 501 ~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~~ 547 (557)
T PHA02713 501 SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSNS 547 (557)
T ss_pred cccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcCCc
Confidence 33333333343 788889999888 7888888877665555555543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=39.48 Aligned_cols=38 Identities=32% Similarity=0.563 Sum_probs=33.1
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
+....+..|...|.++.|++ ++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45566677889999999999 789999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.024 Score=47.21 Aligned_cols=156 Identities=13% Similarity=0.169 Sum_probs=79.0
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc-ccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV-RVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~-~~~~ 163 (364)
.-...+..+.-++||++++++.......-||.-...-...-+.-..+|..|.|.| ++.+.+.+ +.|.|+.=+. ....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCcc
Confidence 4467788999999999999886544455676432222222223467899999999 77766644 8888888772 1111
Q ss_pred ceee---eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 164 NVTS---RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 164 ~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
.... ......-.+..++|.+++...++|+. |.+. .....++..+.......-...++.+.|.+.. .-++.|
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG--- 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLG--- 293 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE----
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCC-ceEEEC---
Confidence 1111 11112234789999998877776664 4433 3333444333222222334567888887654 455555
Q ss_pred CCCeEEEE
Q 040533 241 QDGCIKIW 248 (364)
Q Consensus 241 ~d~~i~i~ 248 (364)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 58877654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.053 Score=51.06 Aligned_cols=294 Identities=11% Similarity=0.155 Sum_probs=153.5
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC------CEEEEEecCCcEEEEe-cCCcceeeee--e--
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA------KTLAVGYMASKLQLWD-AETSKLIRNL--E-- 126 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~dg~i~iw~-~~~~~~~~~~--~-- 126 (364)
++.++.++.+...++..+......+ ..-+..|.|+.++|-| +++++|..+..+.+.- ..+...+... .
T Consensus 502 VvvA~~~~~l~y~~i~~~~l~e~~~-~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~ 580 (1096)
T KOG1897|consen 502 VVVAGGGLALFYLEIEDGGLREVSH-KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE 580 (1096)
T ss_pred EEEecCccEEEEEEeeccceeeeee-heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence 4444455666666666555322221 2336789999999842 3788888776655443 3333322221 1
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee---cccCcEEEEEEcC-------------------C
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN---AHTAEVCGLKWSN-------------------E 184 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~-------------------~ 184 (364)
.-...|.-..+-. +..+|.++..||.+..|.+..........+ --..|+.--.|+. +
T Consensus 581 ~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 581 IIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred ccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 1223444445544 578999999999988776543321110000 0011111111111 1
Q ss_pred CC------------------------EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 185 GN------------------------LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 185 ~~------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
++ .++++. .+.+++..+...+.. .+++.. -......+++.+.. .++.+.+..
T Consensus 660 ~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl-~irtvp-l~~~prrI~~q~~s-l~~~v~s~r 735 (1096)
T KOG1897|consen 660 GKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL-HIRTVP-LGESPRRICYQESS-LTFGVLSNR 735 (1096)
T ss_pred CcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhc-ceeeec-CCCChhheEecccc-eEEEEEecc
Confidence 11 222222 233444444332221 122222 23345566776633 333322100
Q ss_pred ---------CC---CeEEEEECCCCeEEEEEecC-----CCeEEEEEcCC-ccceeeeccCCcc----CCCCeEEEeeCC
Q 040533 241 ---------QD---GCIKIWNVQKGTCIHSVDTK-----AQICGLEWNRH-HKEILSGHGFSSS----GDGQKLCLWKYP 298 (364)
Q Consensus 241 ---------~d---~~i~i~d~~~~~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~~~~~----~~~~~i~i~d~~ 298 (364)
.. ..++++|-.+.+.+...+.. ..+.+..|..+ +.++++|+++..- -..|.|.+|.+.
T Consensus 736 ~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 736 IESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred cccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 11 24677777776666554432 23555567777 8888888765432 335889999887
Q ss_pred CCceeeecccc--ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 299 HMTKWGELQHQ--TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 299 ~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
.++.+.....+ .+.+.++.. -+|++||.- ...|++|+..+.+.++.-..+..++..+..
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l 876 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDL 876 (1096)
T ss_pred cCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEE
Confidence 75544443322 234444432 267777644 568999999998777766666666665543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.027 Score=45.99 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=91.0
Q ss_pred CceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE-cccCccee
Q 040533 89 FPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD-VRVSNNVT 166 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d-~~~~~~~~ 166 (364)
.+.+.+++++++.+|... .++.-.+|-...+....... ....+....|++ ++...+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999887765 23333333333333333332 233788889999 777777766666666664 22232211
Q ss_pred eeeec--ccCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCCCC------cceEEecccccceeEEEEccCCCcEEE
Q 040533 167 SRINA--HTAEVCGLKWSNEGNLLASGG---DDNLVHVWDHSKMSSS------KCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 167 ~~~~~--~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
..... ....|..+.+||||..++... .++.|.+--+...... ............+..+.|.+++..+++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 11211 112899999999999877766 3577777655433332 112222223467899999998854444
Q ss_pred eecCCCCCeEEE
Q 040533 236 SGGGTQDGCIKI 247 (364)
Q Consensus 236 ~~~g~~d~~i~i 247 (364)
... .++.+..
T Consensus 183 ~~~--~~~~~~~ 192 (253)
T PF10647_consen 183 GRS--AGGPVVR 192 (253)
T ss_pred eCC--CCCceeE
Confidence 332 4443433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.04 Score=47.00 Aligned_cols=232 Identities=13% Similarity=0.139 Sum_probs=112.0
Q ss_pred eEEEEcCCCCEEEEEec-CC--cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 91 TSISWSQDAKTLAVGYM-AS--KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 91 ~~~~~s~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
+.=+|.+||+.|+.++. +| .+.+.|+++++..+...+.........++| +.+.++-...+..|+-.|+++.+. ..
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~-~~ 116 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEE-RV 116 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--E-EE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcE-EE
Confidence 34467889987766654 44 577888888876655443222233456677 666665555556888889988764 34
Q ss_pred eeecccCcEEEEEEc--CCCCEEEEEeC----------------------CCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 168 RINAHTAEVCGLKWS--NEGNLLASGGD----------------------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~--~~~~~l~~~~~----------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
.+......+-...|. .++..++-.-. ...|.--|+.+++ ...+......+..
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~----~~~v~~~~~wlgH 192 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE----RKVVFEDTDWLGH 192 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------EEEEEEESS-EEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc----eeEEEecCccccC
Confidence 444445544445553 35554432211 1234445555433 2333334667788
Q ss_pred EEEccCCCcEEEeec-CCCCCe-EEEEECCC-CeEEEEEecC---CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 224 LAWCPYQFNVLASGG-GTQDGC-IKIWNVQK-GTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~-g~~d~~-i~i~d~~~-~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
+.|+|..+.+++-+- |..+.. -+||-+++ +...+.+..+ ..+.-=-|.|+|..+.--. +..++.+..|.-+|+
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~-~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS-YTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE-EETTT--EEEEEE-T
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe-ecCCCCceEEEeeCC
Confidence 999998888877653 112221 24554432 3333333222 2355557899998876532 223455677888999
Q ss_pred CCCceeeeccccccceeEEeecCCCCEEEEEeCC
Q 040533 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
.+++.....+. .....+.-++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 88765433221 234466667899877654443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0083 Score=55.12 Aligned_cols=176 Identities=10% Similarity=0.077 Sum_probs=90.8
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-----cEEEEecCCcceee--eeecCCCcEEEEEee
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-----KLQLWDAETSKLIR--NLEGHDKRVATASWN 138 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~ 138 (364)
.+..||..++.......+.........+ .-+++..+.|+.++ .+..||..+.+... .+.........+..
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~- 397 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL- 397 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-
Confidence 5778888777654443332222222222 22677778887654 48889987664332 22211112222333
Q ss_pred cCCCCEEEEeeCCC-----------------------cEEEEEcccCcceeeeeec-ccCcE-EEEEEcCCCCEEEEEeC
Q 040533 139 HWNGHILTSGSQDK-----------------------SIINHDVRVSNNVTSRINA-HTAEV-CGLKWSNEGNLLASGGD 193 (364)
Q Consensus 139 ~~~~~~l~~~~~dg-----------------------~i~~~d~~~~~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~ 193 (364)
++.+.+.|+.++ .+..||..+..- ..... ..... .+++ .-++++.+.|+.
T Consensus 398 --~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W--~~v~~m~~~r~~~~~~-~~~~~IYv~GG~ 472 (557)
T PHA02713 398 --DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW--ETLPNFWTGTIRPGVV-SHKDDIYVVCDI 472 (557)
T ss_pred --CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE--eecCCCCcccccCcEE-EECCEEEEEeCC
Confidence 788888887653 467788776542 11111 11111 1122 224666677765
Q ss_pred C------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCe
Q 040533 194 D------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGT 254 (364)
Q Consensus 194 d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~ 254 (364)
+ ..+..||..+......+..+.........+.+ +..+.++|| .++ .+..||..+.+
T Consensus 473 ~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 473 KDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYE 536 (557)
T ss_pred CCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCccccc
Confidence 4 24678887752123333333333333333333 337888886 666 67777776654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.022 Score=52.31 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=119.4
Q ss_pred cCCCCEEEEEecCC------cEEEEecCCcceee--eeecCCCcEEEEEeecCCCCEEEEeeCC-C-----cEEEEEccc
Q 040533 96 SQDAKTLAVGYMAS------KLQLWDAETSKLIR--NLEGHDKRVATASWNHWNGHILTSGSQD-K-----SIINHDVRV 161 (364)
Q Consensus 96 s~~~~~l~~~~~dg------~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~~~d~~~ 161 (364)
+..+.+++.|+.++ .+..||..+++... .+. ....-.+++.. ++.+.++|+.| | .+..||...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCC
Confidence 33456777777663 58888888774433 222 22223344444 67889999988 3 577888876
Q ss_pred CcceeeeeecccCcEEEEEE-cCCCCEEEEEeCCCe-----EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 162 SNNVTSRINAHTAEVCGLKW-SNEGNLLASGGDDNL-----VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
.+- .....-..+-..... .-+|.+.++|+.||. +-.||..+.+. ..+..+.. .........-+..+.+
T Consensus 359 ~~W--~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W-~~va~m~~---~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 359 NQW--TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW-TPVAPMLT---RRSGHGVAVLGGKLYI 432 (571)
T ss_pred Cce--eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc-cccCCCCc---ceeeeEEEEECCEEEE
Confidence 652 111111111111111 126788899998864 66788665432 22222211 2222222233347777
Q ss_pred eecCCC-C---CeEEEEECCCCeEEEE--EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeecc
Q 040533 236 SGGGTQ-D---GCIKIWNVQKGTCIHS--VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQ 307 (364)
Q Consensus 236 ~~~g~~-d---~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~ 307 (364)
+||.+. . .++..||..+++-... +.....-..++.-. +...+.|+ +........+..||..+.+- +..+.
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~-~~iYvvGG-~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN-GKIYVVGG-FDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEEC-CEEEEECC-ccCCCccceEEEEcCCCCceeEcccCc
Confidence 776111 1 4578888887654332 22222222233333 33333332 11112234478888766443 22233
Q ss_pred ccccceeEEeecCCCCEEEEEeCCCc-----EEEEEeeCCC
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADET-----LRFWEAFGPS 343 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg~-----i~vw~~~~~~ 343 (364)
.....+....+ ++...++|+.||. |..||..+.+
T Consensus 511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 23333322333 6677788887764 6777665543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.028 Score=43.84 Aligned_cols=205 Identities=13% Similarity=0.116 Sum_probs=116.4
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC---CEEEEeeCCCcEEEEEcccCcc-eeeee-----e
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG---HILTSGSQDKSIINHDVRVSNN-VTSRI-----N 170 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~-~~~~~-----~ 170 (364)
.++.+--..|.|+-||..+.+..+. .....++..+.+-- .+ .+.+.++..-.|.-||...... +...+ .
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv-~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPV-EGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEe-cCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444667777788877554332 21222244444422 22 2333333333344466322211 11110 0
Q ss_pred cccCcEEEEEEcCCCCEEEEEe-C---------CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 171 AHTAEVCGLKWSNEGNLLASGG-D---------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
..+.+.+.-..+|+|++++ |. . .|.++.|-... .+..+...-.--+.++|+.+.+.+..+-+
T Consensus 106 ~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs-- 177 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDS-- 177 (310)
T ss_pred HHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEcc--
Confidence 1134556667789998743 32 1 24455554221 12222222334467899988877777755
Q ss_pred CCCeEEEEE--CCCCe-----EEEEEecC-----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 241 QDGCIKIWN--VQKGT-----CIHSVDTK-----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 241 ~d~~i~i~d--~~~~~-----~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
.+-.|.-|| ..+|. .+..++.. ...-.+++..+|.+.++... .++|...|..+++.+.++.-
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------g~~V~~~dp~tGK~L~eikl 251 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------GGTVQKVDPTTGKILLEIKL 251 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------CcEEEEECCCCCcEEEEEEc
Confidence 788887787 55543 23333221 12345666778887777754 89999999999999999998
Q ss_pred cccceeEEeecC
Q 040533 309 QTSRILELSQSP 320 (364)
Q Consensus 309 ~~~~i~~i~~~~ 320 (364)
....|++++|--
T Consensus 252 Pt~qitsccFgG 263 (310)
T KOG4499|consen 252 PTPQITSCCFGG 263 (310)
T ss_pred CCCceEEEEecC
Confidence 899999999953
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.098 Score=49.43 Aligned_cols=286 Identities=11% Similarity=0.129 Sum_probs=153.0
Q ss_pred CCCcceeecccCCCccEEEEEeCCeEEEE--ECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc
Q 040533 42 LRNDYYSNMMDWGRNNILAIALGLELYLW--KQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 119 (364)
++..+....+.-+...++++..||.+.-| |..++.........-...++.--.|+..++.-+.+..|.-..+|.. ++
T Consensus 582 iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~ 660 (1096)
T KOG1897|consen 582 IPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NG 660 (1096)
T ss_pred cchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CC
Confidence 33444344444333446777788877655 4555554333321122445555566665544444445666666753 34
Q ss_pred ceeeeeecCCCcEEE-EEeec-CCCCEEEEeeCCCcEEEEEcccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeC---
Q 040533 120 KLIRNLEGHDKRVAT-ASWNH-WNGHILTSGSQDKSIINHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGD--- 193 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~-~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 193 (364)
+.+..--.- ..+.. +.|+. .-.+.++++. .+.+++.-++.-+++ .++. .-......+++.+....+++.+.
T Consensus 661 kLv~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e 737 (1096)
T KOG1897|consen 661 KLVYSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIE 737 (1096)
T ss_pred cEEEeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccc
Confidence 433221111 11111 22322 1234455544 345666655433322 2222 22334456666664434443331
Q ss_pred --------C---CeEEEEeCCCCCCCcceEE--eccc--ccceeEEEEccCCCcEEEeecC--------CCCCeEEEEEC
Q 040533 194 --------D---NLVHVWDHSKMSSSKCLHR--FRDH--RAAVKALAWCPYQFNVLASGGG--------TQDGCIKIWNV 250 (364)
Q Consensus 194 --------d---~~i~iwd~~~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~g--------~~d~~i~i~d~ 250 (364)
. ..++++|-++.+ .+.. +... ...+.++.|..+....++.|.+ ...|.|.++..
T Consensus 738 ~~~~~~~ee~~~s~l~vlD~nTf~---vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~ 814 (1096)
T KOG1897|consen 738 SSAEYYGEEYEVSFLRVLDQNTFE---VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEF 814 (1096)
T ss_pred cchhhcCCcceEEEEEEecCCcee---EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEE
Confidence 1 135566633321 1111 1111 1235556687775455555531 13578888887
Q ss_pred CCCeEE---EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEE
Q 040533 251 QKGTCI---HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 251 ~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 327 (364)
..++.+ ......+.+.++..- +|+++++- +..|++|++.+.+.++.-..+..++..+...-.|..+++
T Consensus 815 ~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--------n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 815 EELNSLELVAETVVKGAVYALVEF-NGKLLAGI--------NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred ecCCceeeeeeeeeccceeehhhh-CCeEEEec--------CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE
Confidence 763333 333344556555432 56666654 889999999999888777788888999999999999999
Q ss_pred EeCCCcEEEEEeeCCC
Q 040533 328 AAADETLRFWEAFGPS 343 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~ 343 (364)
|..-+.+.+-..+..+
T Consensus 886 gDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDE 901 (1096)
T ss_pred eeccceEEEEEEeccC
Confidence 9988888877666544
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.018 Score=39.44 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=67.2
Q ss_pred eeEEEE---ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 221 VKALAW---CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 221 v~~~~~---~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
|+++++ ..+|..-|+.|+ .|..|++|+- .+.+..+.....+..+.-...+++.++- .+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs--~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l-------~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGS--DDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYAL-------ANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEec--CCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEe-------cCCEEEEEeC
Confidence 445554 445556666655 9999999974 5778888888999999988886654443 3999999985
Q ss_pred CCCceeeeccccccceeEEeecC-C--C-CEEEEEeCCCcEEE
Q 040533 298 PHMTKWGELQHQTSRILELSQSP-D--G-LTVVSAAADETLRF 336 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~-~--~-~~l~~~~~dg~i~v 336 (364)
. ..+...+.... +.++++.. + | .-|++|-.+|.|-+
T Consensus 71 ~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 S--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 33333333223 55554433 3 2 36888888888743
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.032 Score=48.58 Aligned_cols=107 Identities=17% Similarity=0.132 Sum_probs=67.1
Q ss_pred EEEEcCCCCEEEEEecCCcEEE---EecC-Cc----ceeeeeec---CC--CcEEEEEeecC----------CCCEEEEe
Q 040533 92 SISWSQDAKTLAVGYMASKLQL---WDAE-TS----KLIRNLEG---HD--KRVATASWNHW----------NGHILTSG 148 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~i---w~~~-~~----~~~~~~~~---~~--~~v~~~~~~~~----------~~~~l~~~ 148 (364)
.++.+|+++.||.|..+..+.+ |+.. .+ .......+ +. +.|+++.+-|- +...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5688999999999976665554 5331 11 11111111 22 57888877552 45789999
Q ss_pred eCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC---------CEEEEEeCCCeEEEEe
Q 040533 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG---------NLLASGGDDNLVHVWD 201 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~iwd 201 (364)
..+|.|++|... +. ++..-.-|..+|..+.+.... +.|..... +.|.+.|
T Consensus 86 ~ssG~vrfyte~-G~-LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Id 144 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GV-LLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIID 144 (415)
T ss_pred ecccEEEEEecc-ch-HHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEe
Confidence 999999999864 44 344444688899888875421 34444444 5566666
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.051 Score=43.79 Aligned_cols=206 Identities=13% Similarity=0.126 Sum_probs=117.1
Q ss_pred eecccCCCc--cEEEEEe--CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-----CCcEEEEecCC
Q 040533 48 SNMMDWGRN--NILAIAL--GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-----ASKLQLWDAET 118 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~ 118 (364)
...+.++|. .-++.+. .....++|.++.+...+.........--.=.|||||.+|.+.-. .|.|-|||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 344666663 3344442 34678999988776544432211111223369999998877533 36799999875
Q ss_pred c-ceeeeeecCCCcEEEEEeecCCCCEEEEeeCC-------C-----------cEEEEEcccCcceee-eee--cccCcE
Q 040533 119 S-KLIRNLEGHDKRVATASWNHWNGHILTSGSQD-------K-----------SIINHDVRVSNNVTS-RIN--AHTAEV 176 (364)
Q Consensus 119 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g-----------~i~~~d~~~~~~~~~-~~~--~~~~~v 176 (364)
+ ..+..+..|.-.-..+.|.+ +++.++.+... | ++.+.|..+++.+.+ .+. .+.-.|
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred ccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 4 45667788888888999999 99988876421 1 122333222321111 111 233456
Q ss_pred EEEEEcCCCCEEEEEeCCCeE-----EEEeCCCCCCCcceEEec-------ccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 177 CGLKWSNEGNLLASGGDDNLV-----HVWDHSKMSSSKCLHRFR-------DHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i-----~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
..++..+||...+-+-..|.- .+=-.+. ++++.-+. .....|-+++.+.+...+.+++- ..+.
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~---g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP--~GN~ 303 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK---GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP--RGNR 303 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccC---CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC--CCCe
Confidence 677777777655544322210 0000001 11111111 12346778888877766777654 6778
Q ss_pred EEEEECCCCeEEEEE
Q 040533 245 IKIWNVQKGTCIHSV 259 (364)
Q Consensus 245 i~i~d~~~~~~~~~~ 259 (364)
..+||..+|..+..-
T Consensus 304 ~vi~da~tG~vv~~a 318 (366)
T COG3490 304 AVIWDAATGAVVSEA 318 (366)
T ss_pred EEEEEcCCCcEEecc
Confidence 899999999887653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00096 Score=37.96 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
...|.+++|+|..++||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 557999999999999999999999999998 4543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.073 Score=43.18 Aligned_cols=176 Identities=16% Similarity=0.211 Sum_probs=114.4
Q ss_pred CCCCCCcEEeeCCCCCCCcceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE
Q 040533 27 DFDFQKEARILDAPNLRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV 104 (364)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 104 (364)
++.+..+..+...|......-+.++.|+|+. ++++.....-.|+=..+|+......+.+ -.....+.+..++++.++
T Consensus 67 ~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 67 RYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIV 145 (316)
T ss_pred hccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEE
Confidence 4444555555555444434448999999963 6777777777777677888877777766 344578889888888888
Q ss_pred EecCCcEEEEecCCcceeee----------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecc
Q 040533 105 GYMASKLQLWDAETSKLIRN----------LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAH 172 (364)
Q Consensus 105 ~~~dg~i~iw~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~ 172 (364)
--.++.+.++.+........ ....+.....++|.| ..+.|..+-+-.-+.+|.+....... .....+
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence 77888898888765522211 111256788999999 66677777776777777665332111 111111
Q ss_pred -------cCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 173 -------TAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 173 -------~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
-..|.++.|++ .+.+|+-+.+++.+.-.|..-
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 23467888887 456677777778777777653
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=61.71 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=71.0
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEe
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASW 137 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 137 (364)
+++++..|.+...|..+. ..+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.+-+
T Consensus 102 ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred EEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 344455577777776553 2222222234679999999999999999999999999999999999988877766555443
Q ss_pred ---ecCCCCEEEEeeCCCcEEEEEcc
Q 040533 138 ---NHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 138 ---~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.. .+..++++...|. +|.+.
T Consensus 181 v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 181 VGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEeC-CCcEEEEccCCCc--eEEEE
Confidence 33 4557888888886 55543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.015 Score=54.97 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=68.9
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccc
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA 220 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 220 (364)
-+..++.|+..|.+...|+...-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+.... .++.+..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k---~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK---ILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc---ceeeeeecCCc
Confidence 556788899999999988875322112222345789999999999999999999999999987654 35656555555
Q ss_pred eeEE---EEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 221 VKAL---AWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 221 v~~~---~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
.+++ .+..++. .+.++. ..|. +|.+
T Consensus 175 ~t~vi~v~~t~~nS-~llt~D--~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNS-KLLTSD--TGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCc-EEEEcc--CCCc--eEEE
Confidence 5444 3344443 455542 4454 5654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.012 Score=51.20 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=94.0
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-------EEEEEecCCcEEEEecCCc-c-eeeeeecC---
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-------TLAVGYMASKLQLWDAETS-K-LIRNLEGH--- 128 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~iw~~~~~-~-~~~~~~~~--- 128 (364)
+.....++-.|++.|+.+....+ +. .|+-+.+.|+.+ .-+.|-.+..|.-||.+-. . .+...+.|
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~--~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKF--ED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred CCCcCcceeeecccceeeeEeec--cC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 33446788889999988666654 23 377778888653 2345667888999997632 2 22222322
Q ss_pred -CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 129 -DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 129 -~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.....|.+-. ...++++|+.+|.|++||- .+......+.+...+|..+..+.+|++++..+ +..+.+-++.
T Consensus 429 ~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2334454443 5668999999999999996 45555667888889999999999999887655 5677777654
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0021 Score=49.62 Aligned_cols=103 Identities=10% Similarity=0.096 Sum_probs=65.8
Q ss_pred ccEEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEE-EcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC-CcE
Q 040533 56 NNILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSIS-WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD-KRV 132 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v 132 (364)
..+++++.+|.|++|+.... ....... .-...|.++- --.++.+..+++.+|.|+.|+++-++.+.....|. .++
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 35788889999999987621 1111111 1122333322 22245588899999999999999888888777777 555
Q ss_pred EEEEeecCCCCEEEEe--eCCCcEEEEEccc
Q 040533 133 ATASWNHWNGHILTSG--SQDKSIINHDVRV 161 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~--~~dg~i~~~d~~~ 161 (364)
.....+. .+..++.+ |.|..++.|++..
T Consensus 149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 5555554 55666666 6666777777653
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.085 Score=41.28 Aligned_cols=212 Identities=11% Similarity=0.085 Sum_probs=114.4
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCCCCcceEEe---
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG---NLLASGGDDNLVHVWDHSKMSSSKCLHRF--- 214 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--- 214 (364)
.+.++.+--..|.|.-||..+.......+.+.. ..++.+--.+ .+.+.++..-.|.-||...... ....++
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a-~v~~t~~ev 102 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESA-KVYRTLFEV 102 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEccccccee-eeeeecccc
Confidence 445555555667777788876553333333322 3333332222 2333333333344566332111 112221
Q ss_pred cc--cccceeEEEEccCCCcEEEeecC------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 215 RD--HRAAVKALAWCPYQFNVLASGGG------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 215 ~~--~~~~v~~~~~~~~~~~~~~~~~g------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
.. .....+.-..+|+|+++.-+-+- ...|.++.|-.. ++.......-.--+.++|+.+.+.+....
T Consensus 103 ~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD----- 176 (310)
T KOG4499|consen 103 QPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYID----- 176 (310)
T ss_pred CchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEc-----
Confidence 10 13345566778999764433220 012334444321 11111112223346789998888777654
Q ss_pred CCCCeEEEee--CCCCce-----eeeccc----cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCce
Q 040533 287 GDGQKLCLWK--YPHMTK-----WGELQH----QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGL 355 (364)
Q Consensus 287 ~~~~~i~i~d--~~~~~~-----~~~~~~----~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v 355 (364)
+.+-.|.-|| ..++.. +..++. .....-.++...+|.+.+++-..|+|...|..+++.+..+.-....|
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 2356675566 444432 222222 11112345667788888888888999999999999999999889999
Q ss_pred eeeeec
Q 040533 356 LSLKVS 361 (364)
Q Consensus 356 ~~~~~s 361 (364)
++++|-
T Consensus 257 tsccFg 262 (310)
T KOG4499|consen 257 TSCCFG 262 (310)
T ss_pred EEEEec
Confidence 999985
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.11 Score=42.20 Aligned_cols=267 Identities=10% Similarity=0.037 Sum_probs=137.0
Q ss_pred cCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---eeeeeecC
Q 040533 52 DWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---LIRNLEGH 128 (364)
Q Consensus 52 ~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~ 128 (364)
.++.+....+-.+..++|.|+.+.+.......-.-.+--.++.. .|++..++..+.-+.+.|+.+.. +...+...
T Consensus 93 ~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~ 170 (370)
T COG5276 93 RVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP 170 (370)
T ss_pred EecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC
Confidence 34445555556677899999987654333322122233344444 58888888766667788886553 33344444
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
...-..++. .|++...+..|+-+.+-|+.....+...-.-. ...+.++..+++-.+++... . -+.+-|......
T Consensus 171 ~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-e-gvlivd~s~~ss 245 (370)
T COG5276 171 GGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-E-GVLIVDVSGPSS 245 (370)
T ss_pred CCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-c-ceEEEecCCCCC
Confidence 444566776 67888888899999999998776543322222 23677887777655555443 3 377778776554
Q ss_pred CcceEEecccccc--eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEEecCC-CeEEEEEcCCccceeeec
Q 040533 208 SKCLHRFRDHRAA--VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSVDTKA-QICGLEWNRHHKEILSGH 281 (364)
Q Consensus 208 ~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~-~v~~~~~~~~~~~l~~~~ 281 (364)
....-... ...+ +..+..+ +++..+.- .+.-+.+-|..+... ...+...+ ....+..+. .++..+.
T Consensus 246 p~~~gsye-t~~p~~~s~v~Vs--~~~~Yvad---ga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~--~y~yiad 317 (370)
T COG5276 246 PTVFGSYE-TSNPVSISTVPVS--GEYAYVAD---GAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYG--NYNYIAD 317 (370)
T ss_pred ceEeeccc-cCCcccccceecc--cceeeeec---cccCceeEeccCCCCCchhccccCCCccccceEEec--CeeEecc
Confidence 33222222 1222 2222332 22333322 234445555543211 11111111 222222211 1111111
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.+...+-+....+......+....+.+.+.+-+.+.+.+...++.+.+|+..
T Consensus 318 -------kn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 318 -------KNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred -------CCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 2233333333333332222322334444444456688888999999999863
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0025 Score=36.24 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=28.3
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
...|..++|+|...+||.++.||.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3568999999999999999999999999983
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.12 Score=42.01 Aligned_cols=195 Identities=13% Similarity=0.058 Sum_probs=122.0
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
-.+-+..+.+ .+++...+..+.-+++.|+.+...+...-.-.. +.-.++. -.|++..++..|.-+.+.|+.+..
T Consensus 85 ~~~l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCC
Confidence 3455667777 567788888888899999988775443322222 3333444 357888888866668899999887
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe---EEEEEecCCCeEEEEEcCCccceeeeccC
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT---CIHSVDTKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.+...-+.......-..++.+.+ +-.++. .|+-+.+.|+.+.. .+........+.++..+++..+++..
T Consensus 160 sP~lagrya~~~~d~~~v~ISGn--~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--- 231 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAISGN--YAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--- 231 (370)
T ss_pred CceeeeeeccCCCCceeEEEecC--eEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc---
Confidence 76666666555555566777654 344433 68889999997643 34445555678899999888888776
Q ss_pred CccCCCCeEEEeeCCCCceeeeccc--cccc--eeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQH--QTSR--ILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~--i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+..+.+-|..+.+....+.. ...+ ++.+.. .+++...+..+.-+.+-|+.++
T Consensus 232 -----~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 232 -----DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred -----ccceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence 55666777666553333221 1111 222222 3445555555555666665554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.15 Score=44.17 Aligned_cols=174 Identities=13% Similarity=0.093 Sum_probs=85.1
Q ss_pred CeEEEEECCCCceeeeeeecC-CCCCceEEEEcCCCCEEEEEec--------------------CCcEEEEecCCcceee
Q 040533 65 LELYLWKQENGEVQKLLKVTG-EDDFPTSISWSQDAKTLAVGYM--------------------ASKLQLWDAETSKLIR 123 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~--------------------dg~i~iw~~~~~~~~~ 123 (364)
|.+.++|-++.++....+... ....-+.+-|.|..+.+++... ..++.+||+.+.+.++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 578888888776655444322 2334567788888888887542 3579999999999999
Q ss_pred eeecCCC--cEEEEEeecC-CCCE-EEEeeCCCcEEEEEc-ccCc----ceeee----------------eecccCcEEE
Q 040533 124 NLEGHDK--RVATASWNHW-NGHI-LTSGSQDKSIINHDV-RVSN----NVTSR----------------INAHTAEVCG 178 (364)
Q Consensus 124 ~~~~~~~--~v~~~~~~~~-~~~~-l~~~~~dg~i~~~d~-~~~~----~~~~~----------------~~~~~~~v~~ 178 (364)
++.-... ....+.|..+ +..+ ++.+.-..+|..|-- +.+. .++.. +..-..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 8874332 3556777431 3333 333334445555433 2221 11111 0011345789
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEecc----------------cccceeEEEEccCCCcEEEeec
Q 040533 179 LKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRD----------------HRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 179 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
+..|.|.++|..+. .+|.|+.||+......+.+.+..- -.+...-+..|-||+.+.+|.+
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 99999999888766 689999999998766555544321 1122356777888888888754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.14 Score=45.68 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCceEEEEcCCCCEEEEEe---cCCcEEEEecCCcceeeeeecCCCcEEEEEeecC---CCCEEEEeeCCCcEEEEEccc
Q 040533 88 DFPTSISWSQDAKTLAVGY---MASKLQLWDAETSKLIRNLEGHDKRVATASWNHW---NGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~~d~~~ 161 (364)
.++..++|. ||+.++-.. .+|.+++=| .+.+..| +.|..+.|.|. +...|++.-....|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467889997 676555432 233332222 2233333 45899999883 122455556677899998862
Q ss_pred Cc----ceeeeeec-----ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 162 SN----NVTSRINA-----HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 162 ~~----~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
.. +....... ..--...+.|+|....|++-.....-.+++++.... +....+ ...+.|.|.+|.+||..
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCE
Confidence 21 11111101 111124577999988888777665556666664432 222233 35678999999999988
Q ss_pred EEEeecCCCCCeEEEEECCC
Q 040533 233 VLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~ 252 (364)
++++.+ ..=.-++||-..
T Consensus 170 LVVAvG--SsLHSyiWd~~q 187 (671)
T PF15390_consen 170 LVVAVG--SSLHSYIWDSAQ 187 (671)
T ss_pred EEEEeC--CeEEEEEecCch
Confidence 888765 455678888543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0026 Score=49.15 Aligned_cols=142 Identities=12% Similarity=0.103 Sum_probs=80.4
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEE-EEcCCCCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSI-SWSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATA 135 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~ 135 (364)
+++-+.++.|.-+++...+..... ...+.+. ..-.-+..+++|+.+|.|.+|+... +.....+..-...|.++
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rs-----e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRS-----ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhh-----hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 555666777776666543321111 1111111 1112345789999999999998762 22222222223344444
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCC
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLASG--GDDNLVHVWDHSKM 205 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~ 205 (364)
.-.-.++.+..++..+|.|+.|++...+. ......|. .++..+..+..++.++.+ +.|..++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 33332556899999999999999885553 44444555 445555555555566666 66666777776543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.39 Score=45.59 Aligned_cols=242 Identities=8% Similarity=0.002 Sum_probs=117.1
Q ss_pred CceEEEEcCCCCEEEEEec-----CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC------CcEEEE
Q 040533 89 FPTSISWSQDAKTLAVGYM-----ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD------KSIINH 157 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~ 157 (364)
.+..+.|+||+++|+.+.. .-.|++.|+.+++.+...-.... ..++|.+ +++.|+....+ ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEE
Confidence 4667889999999887643 23589999988864332221221 4699999 66655544332 357777
Q ss_pred EcccCcc-eeeeeecccCcEE-EEEEcCCCCEEEEEe---CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 158 DVRVSNN-VTSRINAHTAEVC-GLKWSNEGNLLASGG---DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 158 d~~~~~~-~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
++.++.. -...+........ ....+.++++++..+ .++.+.+++...... .....+.........+. +..+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eCCCEE
Confidence 8776631 1223332222233 333344777666544 345788888543221 11111111122222222 223333
Q ss_pred EEEeecCCCCCeEEEEECCC-CeEEEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCe--EEEeeCCCCceeeecc
Q 040533 233 VLASGGGTQDGCIKIWNVQK-GTCIHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQK--LCLWKYPHMTKWGELQ 307 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~ 307 (364)
++.+..+.....|...++.+ ++....+.. ...+..+.+..+ ..++... .++. +.+++...+ .+..+.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~------~~g~~~l~~~~~~~~-~~~~l~ 354 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEER------QRGLTSLRQINRKTR-EVIGIA 354 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEE------eCCEEEEEEEcCCCC-ceEEec
Confidence 34443222334555556552 222222333 235777777733 3333332 1444 455554433 333332
Q ss_pred -ccccceeEEeec--CCCC-EEEEEeC---CCcEEEEEeeCCC
Q 040533 308 -HQTSRILELSQS--PDGL-TVVSAAA---DETLRFWEAFGPS 343 (364)
Q Consensus 308 -~~~~~i~~i~~~--~~~~-~l~~~~~---dg~i~vw~~~~~~ 343 (364)
.....+..+.++ +++. ++++.++ -+.+..+|+.+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 355 FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 222223333444 3333 4444432 3567777776543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.4 Score=45.54 Aligned_cols=200 Identities=10% Similarity=0.062 Sum_probs=104.7
Q ss_pred cEEEEEeecCCCCEEEEeeC-C----CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC------CeEEE
Q 040533 131 RVATASWNHWNGHILTSGSQ-D----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD------NLVHV 199 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~-d----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i 199 (364)
.+..+.|+| ++++|+.+.. + ..|++.|+.++..+...+..- -..++|.+|++.|+....+ ..|+.
T Consensus 128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 466788899 8887776532 2 358888887665322322221 1459999998866665432 36777
Q ss_pred EeCCCCCCCcceEEeccccccee-EEEEccCCCcEEEeecCCCCCeEEEEECC--CCeEEEEEecC-CCeEEEEEcCCcc
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVK-ALAWCPYQFNVLASGGGTQDGCIKIWNVQ--KGTCIHSVDTK-AQICGLEWNRHHK 275 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~~~~~~~-~~v~~~~~~~~~~ 275 (364)
+++.+.... ....+........ .+..+.++.++++......++.+.+++.. ++.....+... .....+. +..+.
T Consensus 204 h~lgt~~~~-d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (686)
T PRK10115 204 HTIGTPASQ-DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR 281 (686)
T ss_pred EECCCChhH-CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence 887765221 1222222222222 33344477676665544456789999953 34333233332 2222222 22333
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeecccc-c-cceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-T-SRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+.+.... ......|...++........+-.+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus 282 ly~~tn~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 282 FYLRSNR---HGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEEcC---CCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3333221 122344555555432223333334 2 367788887 33456666777776666554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.16 Score=41.04 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=111.6
Q ss_pred cEEeeCCCCCCCcceeecccCCC-ccEEEEE-eC--CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC
Q 040533 33 EARILDAPNLRNDYYSNMMDWGR-NNILAIA-LG--LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA 108 (364)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~--~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 108 (364)
...+++...+....+...+.+.. +.++-++ .- ..|+.+|+.+++......++. .-.--.++... ++.....-.+
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~-d~l~qLTWk~ 109 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILG-DKLYQLTWKE 109 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEET-TEEEEEESSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEEC-CEEEEEEecC
Confidence 34566665666777888888844 4443333 22 389999999999877666643 22233455543 3344444578
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec--c---cCcEEEEEEcC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA--H---TAEVCGLKWSN 183 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~---~~~v~~~~~~~ 183 (364)
+...+||.++.+.+.++.- .+.=+.++. +++.|+.+.....+.++|..+.+. ...+.. . -..++.+.|-
T Consensus 110 ~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp SEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE-
T ss_pred CeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE-
Confidence 9999999999998888874 455677774 677777776677899999876543 222211 1 1235556664
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCcceEEec---------------ccccceeEEEEccCCCcEEEee
Q 040533 184 EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR---------------DHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 184 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
+|...|=.-....|...|..++. .+..+. ....-.+.|+++|....+++||
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~---V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGK---VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-B---EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCe---EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 45444444444556666644432 222110 0134578999999999999987
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.18 Score=41.35 Aligned_cols=221 Identities=13% Similarity=0.114 Sum_probs=126.1
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEEEEcc------cCcceeeeeec-----ccCcEEEEEEcCCCC------------E
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIINHDVR------VSNNVTSRINA-----HTAEVCGLKWSNEGN------------L 187 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~------~~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~ 187 (364)
.-+.|+++| .+.+-++....+...+||.. ..+.+...+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999 78888887778899999986 22233333331 224567777764322 3
Q ss_pred EEEEeCCCeEEEEeCCCCCCC--cceEEec-ccccce-eEEEEc--cCCCcEEEeecCCCCCeEEEEECCCCeEEE--EE
Q 040533 188 LASGGDDNLVHVWDHSKMSSS--KCLHRFR-DHRAAV-KALAWC--PYQFNVLASGGGTQDGCIKIWNVQKGTCIH--SV 259 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~v-~~~~~~--~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~ 259 (364)
++.+++||+|.-|.-.-.... .....+. ...+.| ..+++. ..+..|.++-- ..++|.+||-.-.+... .+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCc
Confidence 677889999999984322110 1112221 112333 345554 33556777655 78999999864332210 01
Q ss_pred ec-----------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecC
Q 040533 260 DT-----------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSP 320 (364)
Q Consensus 260 ~~-----------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~ 320 (364)
.. .-.|+-..-.++...-+.+ ..-|.|-+||+. ++.++++. +.-...+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G------~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAG------AGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccC------CCcceEEEEcCC-CcEEEEeccCCcccCCceeeeCh
Confidence 00 0011222222233222222 226789999964 66666653 2334456777655
Q ss_pred ------CCCEEEEEeCCCcEEEEEeeCCCCCcceecc------CCceeeeeec
Q 040533 321 ------DGLTVVSAAADETLRFWEAFGPSGSGDFVSH------LDGLLSLKVS 361 (364)
Q Consensus 321 ------~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~v~~~~~s 361 (364)
.|.+|+---.||+|..||..+++.+..+... .+.+++|+|.
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fG 306 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFG 306 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeC
Confidence 4566666667999999999988876666533 2345666654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.13 Score=47.32 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=86.5
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-----CcEEEEecCCcceeee--eecCCCcEEEEEee
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSKLIRN--LEGHDKRVATASWN 138 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~ 138 (364)
.+..||..+++......+.........+.+ ++...+.|+.+ ..+..||..+++.... +.........+..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~- 388 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV- 388 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-
Confidence 578888888877554443322222223332 56777788765 3477888876643321 1111111112222
Q ss_pred cCCCCEEEEeeCC------CcEEEEEcccCcceeeeeeccc--CcEEEEEEcCCCCEEEEEeCC--------CeEEEEeC
Q 040533 139 HWNGHILTSGSQD------KSIINHDVRVSNNVTSRINAHT--AEVCGLKWSNEGNLLASGGDD--------NLVHVWDH 202 (364)
Q Consensus 139 ~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~ 202 (364)
++.+++.|+.+ ..+..||+.+..- ....... ..-.++. ..++..++.|+.+ ..+.+||.
T Consensus 389 --~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 389 --NNLIYVIGGISKNDELLKTVECFSLNTNKW--SKGSPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred --CCEEEEECCcCCCCcccceEEEEeCCCCee--eecCCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecC
Confidence 67777777732 3578888876542 1111111 0011222 2255666666643 23788887
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeE
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTC 255 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~ 255 (364)
.+..- ..+..+.........+.+ ++ .+++.||... .+.+.+||..+.+-
T Consensus 464 ~~~~W-~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 464 VTNKW-TELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCce-eeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 75432 112111111111112222 33 6777765111 24678888776543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.42 Score=45.18 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCC----------cce---eeee--------ecCCCcEEEEEeecC--CCCE
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAET----------SKL---IRNL--------EGHDKRVATASWNHW--NGHI 144 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~----------~~~---~~~~--------~~~~~~v~~~~~~~~--~~~~ 144 (364)
-.|..+.++|+|++||..+..| |.|..+.. |+. .+++ ..+...|..+.|+|. ++..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4678899999999999988765 44444421 111 1111 123457899999994 2588
Q ss_pred EEEeeCCCcEEEEEcccCcc
Q 040533 145 LTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 145 l~~~~~dg~i~~~d~~~~~~ 164 (364)
|+.-..|+++++||+.....
T Consensus 164 l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEecCCEEEEEecCCCCC
Confidence 99999999999999976543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.25 Score=40.41 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=86.5
Q ss_pred cEEEEEeecCCCCEEEEee---CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCC
Q 040533 131 RVATASWNHWNGHILTSGS---QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD-HSKMS 206 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~ 206 (364)
.+.+.++++ ++..++... ....+.++.. +....... ....+....|++++...+....+...+++. .....
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688899999 777666555 2234455443 33323222 223678889999987776666666666663 22222
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC---CC------eEEEEE-ecCCCeEEEEEcCCccc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ---KG------TCIHSV-DTKAQICGLEWNRHHKE 276 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~---~~------~~~~~~-~~~~~v~~~~~~~~~~~ 276 (364)
..............|..+.++|||..+++......++.|.+--+. .+ ...... .....+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 111111111112289999999999988777532235777766543 23 111111 12357899999999998
Q ss_pred eeeec
Q 040533 277 ILSGH 281 (364)
Q Consensus 277 l~~~~ 281 (364)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88764
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.025 Score=53.96 Aligned_cols=148 Identities=15% Similarity=0.060 Sum_probs=93.9
Q ss_pred CCceEEEEcCCCCEEEEEe--cCCcEEEEecCCcceee-----ee------ecCCCcEEEEEeecCCCCEEEEeeCCCcE
Q 040533 88 DFPTSISWSQDAKTLAVGY--MASKLQLWDAETSKLIR-----NL------EGHDKRVATASWNHWNGHILTSGSQDKSI 154 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~-----~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 154 (364)
-.+..+..++|+...++.. .+-.|..||+++-..-. -+ ........++.|+|.-....+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3456666677876555443 33368899987532211 11 11234466788998555667788889999
Q ss_pred EEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-cccceeEEEEccCCCcE
Q 040533 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQFNV 233 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 233 (364)
++..+.........+ ......++++|+|.|+.++.|-..|++.-|...-. ....+..... ....|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 988876544333332 34566899999999999999999999988864321 1111111111 24679999998776555
Q ss_pred EEee
Q 040533 234 LASG 237 (364)
Q Consensus 234 ~~~~ 237 (364)
++-+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 5544
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.12 Score=46.04 Aligned_cols=118 Identities=14% Similarity=0.241 Sum_probs=74.3
Q ss_pred CCCCCceEEEEcCC----CCEEEEEecCCcEEEEecC-----Ccceeeeeec-CCC--c--EEEEEeecCCCCEEEEeeC
Q 040533 85 GEDDFPTSISWSQD----AKTLAVGYMASKLQLWDAE-----TSKLIRNLEG-HDK--R--VATASWNHWNGHILTSGSQ 150 (364)
Q Consensus 85 ~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~-~~~--~--v~~~~~~~~~~~~l~~~~~ 150 (364)
|.-..|..+.|.|- ...|++......|.||.+. +++.+..-.. ..+ + -..+.|+| ...+|++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 44456899999994 3234444457789999975 2232222111 111 1 23578999 8888887776
Q ss_pred CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-CeEEEEeCC
Q 040533 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-NLVHVWDHS 203 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~ 203 (364)
...-.++++......++.--...+.|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 65556677766554343333456789999999999988776433 345788843
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.021 Score=49.14 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEe-cCCcEEEEec-CCcc----eeeeeec--------
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGY-MASKLQLWDA-ETSK----LIRNLEG-------- 127 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~-~dg~i~iw~~-~~~~----~~~~~~~-------- 127 (364)
...+.+||+.+.+..+.+.+......+..+.|..+ ..+=++|+ -.++|..|-- +.++ .+..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 47999999999999988888544445778888764 33333332 3444554433 3332 1222211
Q ss_pred ---------CCCcEEEEEeecCCCCEEEE-eeCCCcEEEEEcccCcceeeeeec------------------ccCcEEEE
Q 040533 128 ---------HDKRVATASWNHWNGHILTS-GSQDKSIINHDVRVSNNVTSRINA------------------HTAEVCGL 179 (364)
Q Consensus 128 ---------~~~~v~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~------------------~~~~v~~~ 179 (364)
-..-|+.|..|. +.++|.. +--+|.|+.||+.....+...-+- -.+...-+
T Consensus 301 p~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp -GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred cccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 024578899999 6666554 456899999999876543322110 11223556
Q ss_pred EEcCCCCEEEEEe
Q 040533 180 KWSNEGNLLASGG 192 (364)
Q Consensus 180 ~~~~~~~~l~~~~ 192 (364)
..|-||+.|+..+
T Consensus 380 qlS~DGkRlYvTn 392 (461)
T PF05694_consen 380 QLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTSSEEEEE-
T ss_pred EEccCCeEEEEEe
Confidence 6677777666553
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.44 Score=43.99 Aligned_cols=182 Identities=7% Similarity=0.048 Sum_probs=94.0
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecccCcEEEEEEcCCCC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~ 186 (364)
-.|+||+. +|..+..+.-....+-.+.|+ +...|++...+|++.+|++-...... .-.......|..+.+..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 45888886 466665554444578889998 56678888999999999986332111 11122233455555555663
Q ss_pred EEEEEeCCCeEEEEe-CCCCCCCcceEEecc---cccceeEEEEccCCC--cEEE-eecCCCCC-eEEEEECCCCeEEEE
Q 040533 187 LLASGGDDNLVHVWD-HSKMSSSKCLHRFRD---HRAAVKALAWCPYQF--NVLA-SGGGTQDG-CIKIWNVQKGTCIHS 258 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~--~~~~-~~~g~~d~-~i~i~d~~~~~~~~~ 258 (364)
.+++ .+|.+.+-. .... .+.++.. ...+-.|-...+++. .++. ..- ..+ .+..-+..+.+...-
T Consensus 141 avlt--~~g~v~~i~~~~~~----~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEP----KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEe--cCCcEEEEcCCCcc----hhhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceeccccccccc
Confidence 3333 345554433 2221 1222211 111112222222211 1111 100 000 011111111222211
Q ss_pred EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 259 VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
....+.+..+..||+.++++.-.. .|.|.+-+....+...++.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~------~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTE------TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEec------CCcEEEEecchhhhhhccC
Confidence 122467888999999999987644 8889888887777766665
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.32 Score=39.36 Aligned_cols=192 Identities=11% Similarity=0.087 Sum_probs=110.8
Q ss_pred ceeeeeecCCC--cEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 120 KLIRNLEGHDK--RVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 120 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
+.+.++. |+. -...+.|.. ++.++-+.+.-| .|+.+|+.+++......-....--..++... +++....-.++
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~ 110 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSS
T ss_pred EEEEECC-CCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCC
Confidence 3445554 432 344677755 788888888776 6889999988743332222222223344443 33444455788
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC------CCeEEEE
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK------AQICGLE 269 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~v~~~~ 269 (364)
...+||..+. +.+.++.- .+.=+.++ .++..++.+-| ...++++|..+.+..+.+... ..++-+.
T Consensus 111 ~~f~yd~~tl---~~~~~~~y-~~EGWGLt--~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 111 TGFVYDPNTL---KKIGTFPY-PGEGWGLT--SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp EEEEEETTTT---EEEEEEE--SSS--EEE--ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred eEEEEccccc---eEEEEEec-CCcceEEE--cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 9999997654 33555432 34456666 45668888765 678999999888777766432 3466677
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc------------c---ccceeEEeecCCCCEEEEEeC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH------------Q---TSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~------------~---~~~i~~i~~~~~~~~l~~~~~ 330 (364)
+- +|...+-.. ....|...|..+|+....+.- + ..-.+.|++.|....|...+.
T Consensus 182 ~i-~G~IyANVW------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 182 YI-NGKIYANVW------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EE-TTEEEEEET------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EE-cCEEEEEeC------CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 75 444333322 277888889999988765421 1 245789999987765555443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.045 Score=52.39 Aligned_cols=146 Identities=11% Similarity=0.099 Sum_probs=92.0
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcc--eEEe------cccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 174 AEVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKC--LHRF------RDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~--~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
-++..+...+|+...++.. .+-.|..||++....... ...+ ........++.|+|.-....+... .|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--ccc
Confidence 3556666677766554443 344789999886433211 1111 112334567889987655555444 789
Q ss_pred eEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc---c-ccceeEEee
Q 040533 244 CIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---Q-TSRILELSQ 318 (364)
Q Consensus 244 ~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~-~~~i~~i~~ 318 (364)
.|++..+.-. .....+......++++|+|.|+.+++|.. .|++.-|... ++....+.. . ...|.+|.|
T Consensus 179 sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n------nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN------NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC------CCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 8988876543 22344455677899999999999999965 8888887743 332222221 1 367899999
Q ss_pred cCCCCEEEEE
Q 040533 319 SPDGLTVVSA 328 (364)
Q Consensus 319 ~~~~~~l~~~ 328 (364)
-....+|++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8777776653
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.38 Score=42.35 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=92.9
Q ss_pred CCCEEE-EEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCC------CCEEEEeeCCCcEEEEEcccCcceeeeee
Q 040533 98 DAKTLA-VGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWN------GHILTSGSQDKSIINHDVRVSNNVTSRIN 170 (364)
Q Consensus 98 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 170 (364)
+..++. .|.....++-.|++.|+.+.....|... -+.|.|.. ...-+.|-.+..|.-.|.+.....+.. .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-V 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-e
Confidence 444443 3555567888899999999988877654 56777621 122344555666777777655532221 1
Q ss_pred cccCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 171 AHTAEVCGLKWSN----EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 171 ~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
.....++.-.|+. ...++|.++..|.|++||--.... -..+.+-...|..+..+.+|.++++++ ...+.
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ilaTC----k~yll 627 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKHILATC----KNYLL 627 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcEEEEee----cceEE
Confidence 2223333333433 344999999999999999543222 233445567889999999999999986 57788
Q ss_pred EEECC
Q 040533 247 IWNVQ 251 (364)
Q Consensus 247 i~d~~ 251 (364)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88875
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.58 Score=42.45 Aligned_cols=172 Identities=12% Similarity=0.052 Sum_probs=84.0
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--CcEEEEecCCcceee--eeecCCCcEEEEEeecCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--SKLQLWDAETSKLIR--NLEGHDKRVATASWNHWN 141 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 141 (364)
.+..||..+++......+.........+. -++...++|+.+ ..+..||..+++... .+.........+.. +
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~ 362 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---N 362 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---C
Confidence 67789988887655554432222222222 367777777754 357888876554322 22211112222333 7
Q ss_pred CCEEEEeeCCC---cEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc
Q 040533 142 GHILTSGSQDK---SIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 142 ~~~l~~~~~dg---~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
+.+.+.|+.++ .+..||.++..-... .+....... +++ .-++++.+.| |.+.+||.++..- ..+..+...
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W-~~~~~m~~~ 436 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTW-TLIDDPIYP 436 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcE-eEcCCCCCC
Confidence 88888888654 467788775542111 011011111 221 2245555555 3567888765422 222222211
Q ss_pred ccceeEEEEccCCCcEEEeecCCCC-----CeEEEEECCCC
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQD-----GCIKIWNVQKG 253 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~~ 253 (364)
.... +++.. ++ .+++.|| .+ ..+..||..++
T Consensus 437 r~~~-~~~v~-~~-~IYviGG--~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 437 RDNP-ELIIV-DN-KLLLIGG--FYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cccc-EEEEE-CC-EEEEECC--cCCCcccceEEEEECCCC
Confidence 1222 22222 23 6777775 32 34666666554
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.61 Score=40.01 Aligned_cols=152 Identities=11% Similarity=0.093 Sum_probs=85.0
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC-cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVS-NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
...+..+.+.| ++.+++++ ..|.+..- .+.+ +........-...++++.+.++++.++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688899988 77665554 45554432 1122 22222223345678999999998876665 467665322233322
Q ss_pred CcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEcCCccceeeecc
Q 040533 208 SKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 208 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
.+.+... ......+..+.+.|++ .+++++ .+|.+. .....++.-.... .......+.+..+++.+++|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G---~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~- 321 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGG---GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ- 321 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEc---CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC-
Confidence 2221111 0112347788898876 466655 467554 3444444433332 123577788887888877764
Q ss_pred CCccCCCCeEEEee
Q 040533 283 FSSSGDGQKLCLWK 296 (364)
Q Consensus 283 ~~~~~~~~~i~i~d 296 (364)
.|.|..++
T Consensus 322 ------~G~il~~~ 329 (334)
T PRK13684 322 ------RGVLLRYV 329 (334)
T ss_pred ------CceEEEec
Confidence 67776665
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.21 Score=43.16 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+++|.++.||+|.+.||+--.+.+|.+++....+.. .+.+.....|....|+. + .-+|..+..| +-+|...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEc
Confidence 44679999999999999999999999999998433222 22233455688999985 4 4455554444 5566555
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEe
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
.....++..+.|+..|+...|.++.+.++-++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 44444666778888999999999877544443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.26 Score=45.38 Aligned_cols=116 Identities=12% Similarity=0.142 Sum_probs=71.1
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCC----
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN--EGNLLASGGDDNLVHVWDHS---- 203 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~---- 203 (364)
....-+.-+. .++..++-+....+.|||.+.+.......-...+.|.++.|.. +++.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3344444444 4444444444557999999866522222224478899999964 88888888889999988532
Q ss_pred --CCCCCcceEEe--cccc-cceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 204 --KMSSSKCLHRF--RDHR-AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 204 --~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
......++..+ ..++ .+|.+..|.++|. +++.+ .+.+.|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s----GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS----GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe----CCEEEEECCC
Confidence 11112223322 2233 6789999999984 44332 4788888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.31 Score=47.98 Aligned_cols=232 Identities=11% Similarity=0.050 Sum_probs=102.2
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCC-cEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK-RVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
......++|+|...++|.|+..|.|++|-...-+.......... .+..+.+-. ..........+..+.+|.......
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~- 112 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTG- 112 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccce-
Confidence 44567789999999999999999999997543332222111110 112122211 112222233344455554432221
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE-ecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
......+++..-.+--.. +-+ ..+.+++||..-......... +..+...+ ....++.-...... .+-.
T Consensus 113 ----~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~----~~~~ 181 (993)
T KOG1983|consen 113 ----VFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVP-YESLSPTLSIEGLV----IDLD 181 (993)
T ss_pred ----eecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccce-eeeeccceeeeccc----cccc
Confidence 112233333332222223 344 778888888543221111110 00010000 00000000000000 0111
Q ss_pred EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE
Q 040533 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT 324 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 324 (364)
-.++.+.... ........++.+..+....+.+..+. .+.+.+|+.........+... ...+++++..
T Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 248 (993)
T KOG1983|consen 182 TVLISLPDAY-LGLSLIEYESLQVLYYSPTKILIGFN-------RGLVVIKDRASKYVQSAYLPN-----GQLESRDGSH 248 (993)
T ss_pred cceeeccccc-ccccccccccceeeeecCCCcceeee-------eeeeeehhcccccchhhcccc-----cccCccCCce
Confidence 1111111111 01111223444444444444444332 556666665443333333221 1122789999
Q ss_pred EEEEeCCCcEEEEEeeCCCC
Q 040533 325 VVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 325 l~~~~~dg~i~vw~~~~~~~ 344 (364)
++++..||.+.+||...+..
T Consensus 249 ~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 249 FVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred EEEEEecCCEEeeecCCCce
Confidence 99999999999999998754
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.45 Score=43.87 Aligned_cols=114 Identities=20% Similarity=0.291 Sum_probs=72.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeec-CCCCEEEEeeCCCcEEEEEcc----
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNH-WNGHILTSGSQDKSIINHDVR---- 160 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~---- 160 (364)
-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.. .+++.+++.+....|.+|.-.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3445555555555544454445579999998876443222 3578899999953 167788888888888887531
Q ss_pred -cCcc---eee--eeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 161 -VSNN---VTS--RINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 161 -~~~~---~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
...+ .+. .+..++ .+|.+..|.++|.+++.+ +..+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1111 111 123344 678999999999655544 456888873
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.59 Score=38.48 Aligned_cols=220 Identities=10% Similarity=0.156 Sum_probs=123.1
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecC------Cc-ceeeeeec-----CCCcEEEEEeecCCCC------------E
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAE------TS-KLIRNLEG-----HDKRVATASWNHWNGH------------I 144 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~------------~ 144 (364)
....|+++|.+.+-++....+...+||.. .. .++..+.. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 34689999999888887778899999986 11 22333331 224567788875 222 3
Q ss_pred EEEeeCCCcEEEEEcccCcc----eeeeee-cccCcE-EEEEEcC--CCCEEEEEe-CCCeEEEEeCCCCCCCcceEEec
Q 040533 145 LTSGSQDKSIINHDVRVSNN----VTSRIN-AHTAEV-CGLKWSN--EGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 145 l~~~~~dg~i~~~d~~~~~~----~~~~~~-~~~~~v-~~~~~~~--~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
++.+++||+|.-|....... ....+. .....| ..+++.. .+.+|+.+. ..++|.+||-.-.. +..-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~----~~~~g 178 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP----PPLPG 178 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc----ccCCC
Confidence 57788999999998543322 111221 112333 3455543 344555443 67889999843221 11000
Q ss_pred ccccceeEEEEccC-----CCcEEEeec-----------CCCCCeEEEEECCCCeEEEEEecCCC---eEEEEEcC----
Q 040533 216 DHRAAVKALAWCPY-----QFNVLASGG-----------GTQDGCIKIWNVQKGTCIHSVDTKAQ---ICGLEWNR---- 272 (364)
Q Consensus 216 ~~~~~v~~~~~~~~-----~~~~~~~~~-----------g~~d~~i~i~d~~~~~~~~~~~~~~~---v~~~~~~~---- 272 (364)
...++-.-.-|.|. +..++++-. |.--|.|-+||+ +++.++.+..... ...|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 00000000001110 112222211 113578999997 5778887765533 45666655
Q ss_pred --CccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc------ceeEEeecC
Q 040533 273 --HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS------RILELSQSP 320 (364)
Q Consensus 273 --~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~i~~i~~~~ 320 (364)
.|.+|+.-.+ ||+|..||..+++.+..+....+ ..+.|.|-.
T Consensus 258 ~~sg~lLVGNFG------DG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFG------DGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecC------CceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3455554444 99999999999998887765432 346677754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.8 Score=39.94 Aligned_cols=102 Identities=12% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCceEEEEcCCCCEEEEEe-----------cCC-cEEEEecCC--cc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCC
Q 040533 88 DFPTSISWSQDAKTLAVGY-----------MAS-KLQLWDAET--SK--LIRNLEGHDKRVATASWNHWNGHILTSGSQD 151 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~-----------~dg-~i~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 151 (364)
..+..|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999998776642 223 677776432 32 2233433344567888887 77 444 4444
Q ss_pred CcEEEEEcccC-----c--ceeeeeec----ccCcEEEEEEcCCCCEEEEEe
Q 040533 152 KSIINHDVRVS-----N--NVTSRINA----HTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 152 g~i~~~d~~~~-----~--~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~ 192 (364)
...++.|.... + .+...+.. +......+.|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33333344321 1 11112211 134477899999998666544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.5 Score=44.05 Aligned_cols=145 Identities=11% Similarity=0.105 Sum_probs=90.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceee----eeeec----------------CCCCCceEEEEcC--CCCEEEEEecCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQK----LLKVT----------------GEDDFPTSISWSQ--DAKTLAVGYMASKLQL 113 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~----~~~~~----------------~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i 113 (364)
.+++.++..+.|.||++....... ...+. .-...|+.|.... +...|+++..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 556777889999999986433211 00100 0111244443332 4468889999999999
Q ss_pred EecCC-------c----c---------eeeeeecCCCcEEEEEee--cCCCCEEEEeeCCCcEEEEEcccC--cceeeee
Q 040533 114 WDAET-------S----K---------LIRNLEGHDKRVATASWN--HWNGHILTSGSQDKSIINHDVRVS--NNVTSRI 169 (364)
Q Consensus 114 w~~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~ 169 (364)
|.+++ . + +...+. -...++.++++ . ..++||+++....|.||-.... +.....-
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccccccc
Confidence 97631 0 0 011112 34578899998 6 7788888888888888765542 1111111
Q ss_pred ecccCcEEEEEEcCCC---C---EEEEEeCCCeEEEEeC
Q 040533 170 NAHTAEVCGLKWSNEG---N---LLASGGDDNLVHVWDH 202 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~---~---~l~~~~~d~~i~iwd~ 202 (364)
..+...|-+++|-++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2356678899997743 2 7888899999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.42 Score=44.09 Aligned_cols=148 Identities=11% Similarity=0.041 Sum_probs=71.3
Q ss_pred CCCEEEEEecCC------cEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeCCC-----cEEEEEcccCcc
Q 040533 98 DAKTLAVGYMAS------KLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQDK-----SIINHDVRVSNN 164 (364)
Q Consensus 98 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~ 164 (364)
++..++.|+.++ .+..||..+.+.... +.........+.. ++.+++.|+.++ .+..||..+..-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 556667776542 577888877654322 1111112222333 778888888653 467788765542
Q ss_pred eeeeeec--ccCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 165 VTSRINA--HTAEVCGLKWSNEGNLLASGGDD------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 165 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
..... +...-.+++ .-++++.+.|+.+ ..+..||..+... ..+..+...... .+++.. ++ .+++.
T Consensus 371 --~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~-~~~~~~-~~-~iyv~ 443 (534)
T PHA03098 371 --REEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYG-GCAIYH-DG-KIYVI 443 (534)
T ss_pred --eeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccC-ceEEEE-CC-EEEEE
Confidence 11111 111111122 2256677777632 3578888765432 111111111111 122222 23 67777
Q ss_pred ecCCCC------CeEEEEECCCCeE
Q 040533 237 GGGTQD------GCIKIWNVQKGTC 255 (364)
Q Consensus 237 ~~g~~d------~~i~i~d~~~~~~ 255 (364)
||.... ..+.+||..+++-
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCce
Confidence 652111 2388899887654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.5 Score=42.10 Aligned_cols=231 Identities=10% Similarity=0.045 Sum_probs=119.1
Q ss_pred CCEEEEEecCCcEEEEecCCcceeeeeecCCCc--------EEEEEeec---------------CCCCEEEEeeCCCcEE
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKR--------VATASWNH---------------WNGHILTSGSQDKSII 155 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------v~~~~~~~---------------~~~~~l~~~~~dg~i~ 155 (364)
+..|..++.++.|.-.|..+|+.+.++...... ...+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788899999999999988776532211 11222211 0234788888999999
Q ss_pred EEEcccCcceeeeeecccCcE-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEeCCCCCCCcc
Q 040533 156 NHDVRVSNNVTSRINAHTAEV-------------CGLKWSN--EGNLLASGGD----------DNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~ 210 (364)
-.|.++++.+.. + +..+.+ ..+.-.| .+..+++|+. +|.|+-+|.++++.
T Consensus 274 ALDA~TGk~~W~-f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl--- 348 (764)
T TIGR03074 274 ALDADTGKLCED-F-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL--- 348 (764)
T ss_pred EEECCCCCEEEE-e-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE---
Confidence 999988875432 1 111111 0111122 2335666642 68899999887643
Q ss_pred eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC
Q 040533 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290 (364)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (364)
+-.+..-....... .+.+ .....+++ ..-...-+|.+.+....-.....+ .+....+.... . ...+
T Consensus 349 ~W~~~~g~p~~~~~--~~~g-~~~~~gg~-n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~-n-----~y~~ 414 (764)
T TIGR03074 349 VWAWDPGNPDPTAP--PAPG-ETYTRNTP-NSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPAD-E-----KYSS 414 (764)
T ss_pred eeEEecCCCCcccC--CCCC-CEeccCCC-CccCceEEcCCCCeEEEeCCCccc----cccCCccccCc-c-----cccc
Confidence 44332110000000 0122 22222210 111334455544433221111100 01000000000 0 1156
Q ss_pred eEEEeeCCCCceeeeccccccc---------eeEEeecC-CCC---EEEEEeCCCcEEEEEeeCCCCCcce
Q 040533 291 KLCLWKYPHMTKWGELQHQTSR---------ILELSQSP-DGL---TVVSAAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~~~~~---------i~~i~~~~-~~~---~l~~~~~dg~i~vw~~~~~~~~~~~ 348 (364)
.|.-.|.++++..-.++..... ..-+.+.. +|+ .++.++.+|.+.+.|-++++.+...
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 7777888898888777641111 11122322 553 7899999999999999998876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.91 Score=38.95 Aligned_cols=149 Identities=11% Similarity=0.077 Sum_probs=84.6
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEE-EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 173 TAEVCGLKWSNEGNLLASGGDDNLVHV-WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
...+..+.+.|++.+++++. .|.+.. +|-. ......+ .......++++.+.++++ +++.+ ..|.+++=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~--~~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPH--QRNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEe--eCCCcccceeeeEcCCCC-EEEEe---cCCEEEEccCC
Confidence 45688999999887666554 565543 2211 1111111 123346788999999885 44444 36766532334
Q ss_pred CCeEEEEEec-----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc---cccceeEEeecCCCC
Q 040533 252 KGTCIHSVDT-----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---QTSRILELSQSPDGL 323 (364)
Q Consensus 252 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~ 323 (364)
.+..-..... ...+.++.+.+++..++++. +|.+. .....++....... -....+.+.|..+++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-------~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-------NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK 315 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEcC-------CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence 4433222221 13478889999888777763 55554 34454554444322 223577788776666
Q ss_pred EEEEEeCCCcEEEEE
Q 040533 324 TVVSAAADETLRFWE 338 (364)
Q Consensus 324 ~l~~~~~dg~i~vw~ 338 (364)
.++ .+..|.|--|+
T Consensus 316 ~~~-~G~~G~il~~~ 329 (334)
T PRK13684 316 GFV-LGQRGVLLRYV 329 (334)
T ss_pred eEE-ECCCceEEEec
Confidence 555 55678877665
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.39 Score=41.83 Aligned_cols=139 Identities=9% Similarity=0.148 Sum_probs=74.0
Q ss_pred eecccCCCccEEEEEe-------------CC-eEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcE
Q 040533 48 SNMMDWGRNNILAIAL-------------GL-ELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKL 111 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~-------------~~-~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 111 (364)
...++|++++.+-++. .+ .|.+++-.+ ++..+...+...-.....+++.+++ +++ +... .|
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-DI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-eE
Confidence 4557777765333332 12 777776543 3332222332334457889999988 444 4434 45
Q ss_pred EEE-ecCCc-----ce--e-eeeec----CCCcEEEEEeecCCCCEEEEeeCC-------------------CcEEEEEc
Q 040533 112 QLW-DAETS-----KL--I-RNLEG----HDKRVATASWNHWNGHILTSGSQD-------------------KSIINHDV 159 (364)
Q Consensus 112 ~iw-~~~~~-----~~--~-~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d-------------------g~i~~~d~ 159 (364)
..+ +.... +. + ..+.. +......++|.| ++.+.++-+.. |.|..++.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 444 44321 11 1 11221 134477899999 88776655421 34555555
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEe
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
.... .+.+...-.....++|+++|+++++-.
T Consensus 172 dg~~--~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGK--LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCe--EEEEecCcCCCccceECCCCCEEEEcc
Confidence 4333 222322234457899999988776644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0082 Score=51.82 Aligned_cols=199 Identities=14% Similarity=0.238 Sum_probs=112.5
Q ss_pred eecccCCCcc---EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.-.++|+.+. .+.+...+.+++||+.+....++-.-..|.... +.|++.+..++.|...|.+.|++..+.+.+..
T Consensus 77 aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv 154 (615)
T KOG2247|consen 77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV 154 (615)
T ss_pred HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhh
Confidence 3456776643 444556789999999876543332211233333 78999999999999999999999888777766
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEE--EE---EEcCCCCEEEEEeCC-CeEE
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVC--GL---KWSNEGNLLASGGDD-NLVH 198 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~--~~---~~~~~~~~l~~~~~d-~~i~ 198 (364)
.-.|..+++++++.+ . ++.+.++.|..+.+-...+...-.....+..+... ++ .|...|..+.+.-.. ..+.
T Consensus 155 ~Gkh~RRgtq~av~l-E-d~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~ 232 (615)
T KOG2247|consen 155 MGKHQRRGTQIAVTL-E-DYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLM 232 (615)
T ss_pred hcccccceeEEEecc-c-ceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHH
Confidence 666999999999987 4 45556666655444333222111111111111111 11 233344444433211 1111
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.-.+.....+..+ .++...+.+.|..|--|| +++. |..-|.|..-.+.+++.
T Consensus 233 yak~nE~D~pval-~fq~~~gni~cyrwylDg-~i~i---gf~ag~iV~iS~h~aeL 284 (615)
T KOG2247|consen 233 YAKYNELDEPVAL-QFQEKYGNIHCYRWYLDG-YILI---GFDAGYIVSISAHNAEL 284 (615)
T ss_pred HHhhcCCCCccce-EeeecCCceeEEEEeccc-cccc---cccceeEEEEeccchHH
Confidence 1122222222223 566667778889998887 3433 22456677767666544
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.6 Score=40.07 Aligned_cols=252 Identities=12% Similarity=0.034 Sum_probs=121.5
Q ss_pred cCCCCEEEEEecCCcEEEEecCCcc---eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc
Q 040533 96 SQDAKTLAVGYMASKLQLWDAETSK---LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH 172 (364)
Q Consensus 96 s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 172 (364)
..++..++.+.++|.+....+.... .+..+..-.....++.+....+.+|+.|+.-|.=.++.+.............
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 4467788899999999988876543 1222221144556666664122488888876655555554332111111234
Q ss_pred cCcEEEEEEcCC----CC------EEEEEe---CCCeEEEEeCCCCCCCc-ceEEeccc--ccceeEEEEcc-CCCcEEE
Q 040533 173 TAEVCGLKWSNE----GN------LLASGG---DDNLVHVWDHSKMSSSK-CLHRFRDH--RAAVKALAWCP-YQFNVLA 235 (364)
Q Consensus 173 ~~~v~~~~~~~~----~~------~l~~~~---~d~~i~iwd~~~~~~~~-~~~~~~~~--~~~v~~~~~~~-~~~~~~~ 235 (364)
-++|..++..+. .. .|++++ .+|.+++..- +-... ........ -..++.+.... ++.++++
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 578888888531 11 455543 5678887742 11111 01111111 23344444333 1334444
Q ss_pred eecCCCCCeEEEEECC---CCeEEEEEe-----cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 236 SGGGTQDGCIKIWNVQ---KGTCIHSVD-----TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~---~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
+- ...-+++.+. ..+.+..+. ...+-..+....++..+-+. ...|++.+....+......
T Consensus 377 S~----~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt--------~~~i~l~~~~~~~~~~~w~ 444 (504)
T PF10433_consen 377 SF----PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVT--------PKGIRLIDLEDGKLTQEWK 444 (504)
T ss_dssp EE----SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEE--------SSEEEEEESSSTSEEEEEE
T ss_pred Ec----CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEe--------cCeEEEEECCCCeEEEEEe
Confidence 43 3445555553 233332221 11222222222244444333 6778899887777766653
Q ss_pred c-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-----ccCCceeeeeeccC
Q 040533 308 H-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-----SHLDGLLSLKVSPI 363 (364)
Q Consensus 308 ~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~sp~ 363 (364)
. ....|.+.+. ++.+++.+-.++.+..+.+.......... ...+.|.|+..+|+
T Consensus 445 ~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p~ 504 (504)
T PF10433_consen 445 PPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEPI 504 (504)
T ss_dssp -TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE----
T ss_pred CCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCCC
Confidence 3 3345666655 44577777778999999998766542222 14678999999986
|
... |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.081 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=25.8
Q ss_pred cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCC
Q 040533 219 AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 219 ~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
+.+.++.|+|... .+|+.+- ..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEcccC
Confidence 3688999998664 5777654 6899999999953
|
It contains a characteristic DLL sequence motif. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=1 Score=40.89 Aligned_cols=183 Identities=10% Similarity=0.027 Sum_probs=83.1
Q ss_pred CCCEEEEeeCCC-----cEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCCCcceE
Q 040533 141 NGHILTSGSQDK-----SIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGDD--NLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 141 ~~~~l~~~~~dg-----~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~ 212 (364)
++.+++.|+.++ .+..||..+..... ..+....... +++ .-++...+.|+.+ ..+..||...... ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W-~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAW-VNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeE-EECC
Confidence 566777777543 46678877543211 1111111111 122 2366777777754 3577788654321 1122
Q ss_pred EecccccceeEEEEccCCCcEEEeecCCCC---CeEEEEECCCCeEEEEEecCCCe-EEEEEcCCccceeeeccCCccCC
Q 040533 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQD---GCIKIWNVQKGTCIHSVDTKAQI-CGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d---~~i~i~d~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
.+.........+.. ++ .+.+.|| .+ ..+..||.++.+-...-....+. ...+..-+++..+.|
T Consensus 348 ~l~~~r~~~~~~~~--~g-~IYviGG--~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G-------- 414 (480)
T PHA02790 348 SLLKPRCNPAVASI--NN-VIYVIGG--HSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG-------- 414 (480)
T ss_pred CCCCCCcccEEEEE--CC-EEEEecC--cCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--------
Confidence 22111111112222 23 6777775 33 35778888765443221111111 111112344444443
Q ss_pred CCeEEEeeCCCCc--eeeeccccccceeEEeecCCCCEEEEEeCC-----CcEEEEEeeCC
Q 040533 289 GQKLCLWKYPHMT--KWGELQHQTSRILELSQSPDGLTVVSAAAD-----ETLRFWEAFGP 342 (364)
Q Consensus 289 ~~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 342 (364)
|.+.+||..+.+ .+..+.........+.+ +|++.+.||.+ ..+..||..+.
T Consensus 415 -G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 -RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 346778876532 22222221222222232 67777888754 34666666543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.024 Score=52.75 Aligned_cols=157 Identities=18% Similarity=0.300 Sum_probs=83.6
Q ss_pred CeEEEEECC--CCceeeeeee---cCCCCCceEEEEcC---CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 65 LELYLWKQE--NGEVQKLLKV---TGEDDFPTSISWSQ---DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 65 ~~i~iw~~~--~~~~~~~~~~---~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
|.+.||++. .|+....+.+ ......+.-+.|.| +.-++..+..++.|++....+... ..+.+|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678888865 3433222221 12233445555655 556777888888888877654433 44556888887777
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CCCCcceEEe
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK--MSSSKCLHRF 214 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~ 214 (364)
|.. .+-+.+.+ .+|||..++++..||.++.|.+.- .....+++..
T Consensus 232 ~~~-~g~~~l~~--------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 232 FFA-EGVLKLAS--------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred HHh-hchhhhee--------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc
Confidence 754 22211111 567777777777777777665432 1122344455
Q ss_pred ccccc-ceeEEEEccC-------CCc-EEEeecCCCCCeEEEEECCCCeEE
Q 040533 215 RDHRA-AVKALAWCPY-------QFN-VLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 215 ~~~~~-~v~~~~~~~~-------~~~-~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
+.|.+ +-.|.-++.+ +.+ +++++ ......+++|.....+|+
T Consensus 279 kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt-td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 279 KPHDKHPRVCWLCHKQEILVVSIGKWVLRITT-TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCCCceeeeeccccccCCccceeEEEEec-ccCCcceeEeeccchhhh
Confidence 55542 2222112211 111 22232 235567888887766665
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.5 Score=41.12 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=69.2
Q ss_pred CCCEEEEeeCCCcEEEEEcccCc-----------c--------eeeeeecccCcEEEEEEc--CCCCEEEEEeCCCeEEE
Q 040533 141 NGHILTSGSQDKSIINHDVRVSN-----------N--------VTSRINAHTAEVCGLKWS--NEGNLLASGGDDNLVHV 199 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~-----------~--------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i 199 (364)
+.+.|+.+..||.|.+|..+.-- . +...+ .-...+++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 56789999999999999763100 0 01111 223578899998 78889999998888888
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCC--Cc---EEEeecCCCCCeEEEEEC
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ--FN---VLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~~~~~~g~~d~~i~i~d~ 250 (364)
|-+...........-..+...|.+|+|-++. .. .+++++ -.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence 8655422111111111256678899997654 12 444444 7899988887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.98 Score=35.28 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=65.8
Q ss_pred CEEEEeeCCCcEEEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCCC------eEEEE---eCCCCCCCcceE
Q 040533 143 HILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN------LVHVW---DHSKMSSSKCLH 212 (364)
Q Consensus 143 ~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iw---d~~~~~~~~~~~ 212 (364)
+.|+.+...+.|.+|++.... .+...+. --+.|..+.++..|+++++--.+. .+++| +...........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 555555677789999998443 3333443 347899999999999999864332 45554 322111111111
Q ss_pred Eecc---------------------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 213 RFRD---------------------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 213 ~~~~---------------------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
.+.+ -..++.+++-+|-...+++. .++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg----~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG----CGNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE----cCCEEEEEEEEEEE
Confidence 1111 13456788888877677774 37889999886543
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.094 Score=28.93 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=26.2
Q ss_pred CCceEEEEcCCC---CEEEEEecCCcEEEEecCCc
Q 040533 88 DFPTSISWSQDA---KTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 88 ~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~ 119 (364)
+.|.++.|||+. ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999844 58888888899999999853
|
It contains a characteristic DLL sequence motif. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.7 Score=37.89 Aligned_cols=155 Identities=14% Similarity=0.204 Sum_probs=92.1
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEecCCcc---eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---e
Q 040533 92 SISWSQDAKTLAVGYMASKLQLWDAETSK---LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN---V 165 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~ 165 (364)
.+-|. |.+..+.+...|.+.=|-+.... .+..-....++|.++.|++ |.+.||+--.+++|.+++....+. .
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHH
Confidence 34343 33333333345556666554221 1222223567999999999 999999999999999999843332 2
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
....+..+..|....|+.+ .-+|.....| +-+|.+... .+.++..+.+...|.-..|+++..-++.+.+ -..+++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe--krslRlVks~~~nvnWy~yc~et~v~LL~t~-~~~n~l 179 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE--KRSLRLVKSHNLNVNWYMYCPETAVILLSTT-VLENVL 179 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh--hhhhhhhhhcccCccEEEEccccceEeeecc-cccccc
Confidence 2233344556899999876 4566665555 666654432 2335555667778888889988755544432 133444
Q ss_pred EEEECCCC
Q 040533 246 KIWNVQKG 253 (364)
Q Consensus 246 ~i~d~~~~ 253 (364)
.=+-++++
T Consensus 180 npf~~~~~ 187 (657)
T KOG2377|consen 180 NPFHFRAG 187 (657)
T ss_pred ccEEEeec
Confidence 44444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.1 Score=41.44 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=91.0
Q ss_pred CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC
Q 040533 152 KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
-.|+||+.. +.. +.........+..+.|+.+. .|++...+|++++|++-.......-.........|..+.+...|
T Consensus 64 ~~I~If~~s-G~l-L~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQL-LGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred eeEEEEecc-ccc-hHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 357888865 433 33333334478899999876 46667789999999975321111000011223345555555555
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEEec-C-CCe--EEEEEcCCccc--eeeeccCCccCCCCeEEEeeCCC-Cceee
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDT-K-AQI--CGLEWNRHHKE--ILSGHGFSSSGDGQKLCLWKYPH-MTKWG 304 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~-~~v--~~~~~~~~~~~--l~~~~~~~~~~~~~~i~i~d~~~-~~~~~ 304 (364)
-.+.+ .+|.+.+-+-.....+..+.. + ... .+-...+++.. ++..-... .+ ..++.... .....
T Consensus 140 Vavlt----~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~----v~-~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 140 VAVLT----VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA----VG-LHICQVEESRVQLH 210 (829)
T ss_pred eEEEe----cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechh----hh-hcccceeccccccc
Confidence 33333 355555544322222233221 1 111 22222222111 11100000 00 00111111 11112
Q ss_pred eccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 305 ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 305 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.+....+.+..+..||+.++|+--..+|.|.+-..+..+....+.
T Consensus 211 ~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 211 ALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 222234568889999999999999999999998877666554443
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.17 Score=38.60 Aligned_cols=29 Identities=21% Similarity=0.443 Sum_probs=24.4
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCC
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENG 75 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~ 75 (364)
+..+++||.++.+|++.+..|.|.+..+.
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P 34 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTP 34 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCC
Confidence 35789999999999999999999955443
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.7 Score=36.66 Aligned_cols=232 Identities=11% Similarity=-0.006 Sum_probs=114.5
Q ss_pred EEEEEeCCeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcce-------------
Q 040533 58 ILAIALGLELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKL------------- 121 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~------------- 121 (364)
.+..|.+..+++.+..+ ++..++ .+...|+++...+.-+.|++-+ ....++.+++..-..
T Consensus 15 ~lL~GTe~Gly~~~~~~~~~~~~kl----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 15 WLLVGTEEGLYVLNISDQPGTLEKL----IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred EEEEEeCCceEEEEcccCCCCeEEe----cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 56666666677777664 333333 3466899999998887776654 333499999843221
Q ss_pred --eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-------cccCcEEEEEEcCC--CCEEEE
Q 040533 122 --IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-------AHTAEVCGLKWSNE--GNLLAS 190 (364)
Q Consensus 122 --~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~--~~~l~~ 190 (364)
....-.+................++++....+|.++............. ....++..+..+++ ...++.
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 0111123333333333321222334444455666664432211011111 11223334433432 456777
Q ss_pred EeCCCeEEEEeCCC--CCCCcceEE--ecccc-cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEEecCC
Q 040533 191 GGDDNLVHVWDHSK--MSSSKCLHR--FRDHR-AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSVDTKA 263 (364)
Q Consensus 191 ~~~d~~i~iwd~~~--~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~ 263 (364)
|+..+...++++.. ......... ..... .++..... +++ .++.+ .|....+.|....+.. ..+.-..
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~-e~Llc----~~~~~v~Vn~~G~~~~r~~~l~w~~ 244 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRD-EFLLC----YDEFGVFVNLYGKRRSRNPILHWEF 244 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCC-eEEEE----ECcEEEEEeCCCCccccceEEEcCC
Confidence 77642234444422 111000000 01111 33333333 344 34443 4667777777531222 2333345
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
...++++.. .++++-. ++.|.++++.+++.+.++..
T Consensus 245 ~p~~~~~~~--pyll~~~-------~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 245 MPESFAYHS--PYLLAFH-------DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cccEEEEEC--CEEEEEc-------CCcEEEEECCCCceEEEEec
Confidence 566777763 5555443 77899999999988877753
|
Unpublished observations. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.79 Score=32.75 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=67.1
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEecCCcc--------eeeeeecCCCcEEEEEeecC----CCCEEEEeeCCCcEEEEEc
Q 040533 92 SISWSQDAKTLAVGYMASKLQLWDAETSK--------LIRNLEGHDKRVATASWNHW----NGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~ 159 (364)
.-.|......|++++..|+|.|++..... .+..+. -...|++++--+- ..+.|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34566666789999999999999876432 334444 4566777765431 3567777765 47899999
Q ss_pred ccCcceeeeeecccCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSN----EGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~ 203 (364)
.....+ .++.-.+.|+++.+-. +..++++|+ ...|.-||..
T Consensus 81 ~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~ 125 (136)
T PF14781_consen 81 ENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYE 125 (136)
T ss_pred ccCchh--hhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCC
Confidence 866532 2334456777777643 234455444 5566666643
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.85 Score=32.57 Aligned_cols=112 Identities=11% Similarity=0.105 Sum_probs=69.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCC-----CCcceEEecccccceeEEEEcc----CCCcEEEeecCCCCCeEEEEE
Q 040533 179 LKWSNEGNLLASGGDDNLVHVWDHSKMS-----SSKCLHRFRDHRAAVKALAWCP----YQFNVLASGGGTQDGCIKIWN 249 (364)
Q Consensus 179 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~g~~d~~i~i~d 249 (364)
-.|......|++++.-|+|.|++..... ....+..+. -+..|++++--+ ++..+|+.|+ ...+..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt---~t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT---QTSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec---cceEEEEE
Confidence 3565666678888889999999865432 112233332 355677776443 3456777774 78899999
Q ss_pred CCCCeEEEEEecCCCeEEEEEcC----CccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 250 VQKGTCIHSVDTKAQICGLEWNR----HHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
......+...+.+..+.++.+-. ..+.+++|. +..|.-||..-.+
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-------ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-------NCSIQGFDYEGNE 128 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-------eEEEEEeCCCCcE
Confidence 99887766656666677766532 234444443 5556666654433
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.045 Score=51.10 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=77.7
Q ss_pred CCcEEEEecCCcc-eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc------ceeeeeecccCcEEEEE
Q 040533 108 ASKLQLWDAETSK-LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------NVTSRINAHTAEVCGLK 180 (364)
Q Consensus 108 dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~ 180 (364)
.+-+++-+..+.- .-..+++..+.|..+.|-..+...+. -.-|.+.+||+..-+ ..+.........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4557777655432 12334566778888888543333333 344678899876422 11222222333445555
Q ss_pred EcC---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 181 WSN---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 181 ~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
|.| +.-++..+-.++.+++....... ...+.+|...+..++|-..|-.++..-+ -||++..|-...|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g~~~l~~lS--pDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVTDMAFFAEGVLKLASLS--PDGTVFAWAISDG 257 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcccHHHHhhchhhheeeC--CCCcEEEEeecCC
Confidence 555 55677788888888887765432 2344568777777777665533333322 5555555554443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.22 Score=27.37 Aligned_cols=41 Identities=7% Similarity=0.167 Sum_probs=30.8
Q ss_pred cCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEE
Q 040533 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270 (364)
Q Consensus 228 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~ 270 (364)
|+++.++++.. .+++|.++|..+++.+..+........+.+
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 56767777764 689999999999998888876554555554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.68 E-value=4.4 Score=39.03 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=64.9
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCC------CceEEEEc----------------CCCCEEEEEecCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDD------FPTSISWS----------------QDAKTLAVGYMASKLQL 113 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~------~v~~~~~s----------------~~~~~l~~~~~dg~i~i 113 (364)
+.++.++.++.|+-.|..+|+..=.+....... ....+++. ..+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 345666667889999999887643333221111 01122221 13447888889999999
Q ss_pred EecCCcceeeeeecCCCcEE-------------EEEeecC-CCCEEEEeeC----------CCcEEEEEcccCcceee
Q 040533 114 WDAETSKLIRNLEGHDKRVA-------------TASWNHW-NGHILTSGSQ----------DKSIINHDVRVSNNVTS 167 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~~~~~----------dg~i~~~d~~~~~~~~~ 167 (364)
.|.++|+....+.. ++.|. .+.-.|. .+..++.|+. +|.|+-+|.++++..-.
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999998876642 22110 0000110 2345555542 68899999998875433
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.59 E-value=2.2 Score=40.58 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=24.8
Q ss_pred ccceeEEeecCC---CCEEEEEeCCCcEEEEEeeCCC
Q 040533 310 TSRILELSQSPD---GLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 310 ~~~i~~i~~~~~---~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
...|..+.|+|. +..|+.-..|+++|+||+....
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 346777888875 4677777888888888886543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.0041 Score=53.55 Aligned_cols=144 Identities=15% Similarity=0.284 Sum_probs=99.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 175 EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
......|-+.+.-++.++.+..+..||-.. +..... ..++....++|+.+++.+++.+. ..+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~ag----q~~le~-n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~ey 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAG----QVILEL-NPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEY 108 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhc----ceeccc-CCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhh
Confidence 344567788776688888888888898332 222222 23455667889888877777765 78999999997642
Q ss_pred EEEEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 255 CIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 255 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
. .+++ ....-.-+.|++.+..++.+.. .+.+.|++..+.+.+...-.|...++++++.+.+. .+.++.|.
T Consensus 109 t-qqLE~gg~~s~sll~wsKg~~el~ig~~------~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 109 T-QQLESGGTSSKSLLAWSKGTPELVIGNN------AGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred H-HHHhccCcchHHHHhhccCCcccccccc------ccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 1 1222 1222233789999998888854 89999999988887777766889999999998774 44444443
Q ss_pred c
Q 040533 333 T 333 (364)
Q Consensus 333 ~ 333 (364)
.
T Consensus 181 ~ 181 (615)
T KOG2247|consen 181 T 181 (615)
T ss_pred H
Confidence 3
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.8 Score=33.81 Aligned_cols=142 Identities=12% Similarity=0.113 Sum_probs=81.3
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC---eEEEEE---CC--CCeEEE-
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG---CIKIWN---VQ--KGTCIH- 257 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~---~i~i~d---~~--~~~~~~- 257 (364)
.|+.+...+.|.+|++.. +..+.+..+.. -+.|..+.++..|+++++.-...... .+|+|- .. ...++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~-~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQ-EECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred eEEEEcCCCEEEEEEccc-CCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 444446677899999983 33455666654 47899999999998877764311223 566652 11 111111
Q ss_pred ----------------------EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-ee-----ecc--
Q 040533 258 ----------------------SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WG-----ELQ-- 307 (364)
Q Consensus 258 ----------------------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~-----~~~-- 307 (364)
.+....++.+++-.|-...|+.|. ++.+.+|.+..... .. .+.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-------~~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-------GNKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-------CCEEEEEEEEEEEEecccccEEechhh
Confidence 112234566777777555555554 88999998754332 11 111
Q ss_pred ---cccc-ceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 308 ---HQTS-RILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 308 ---~~~~-~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.|.+ ....+++. +.|+|..+. -.+++..+.
T Consensus 181 l~~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred hhheecCceEEEEEEE--eeEEEEecC-CEEEEEEEe
Confidence 1111 24556663 457777664 467777654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.5 Score=37.64 Aligned_cols=62 Identities=10% Similarity=0.162 Sum_probs=45.6
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeee------ee-------cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSR------IN-------AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
++++|++.+.+|.+++||+.+.+..... +. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 7889999999999999999877643222 21 2446678888888887666655 5778888854
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.31 E-value=3.5 Score=36.38 Aligned_cols=271 Identities=11% Similarity=0.076 Sum_probs=144.4
Q ss_pred ccEEEEEeCCeEEEEECCCCcee--eeeeecCCCCCceEEEEcC-----CCCEEEEEecCCcEEEEecCC--cc------
Q 040533 56 NNILAIALGLELYLWKQENGEVQ--KLLKVTGEDDFPTSISWSQ-----DAKTLAVGYMASKLQLWDAET--SK------ 120 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iw~~~~--~~------ 120 (364)
+.++.++..|.++||+...++.. .+.--..-+.+|..+..-+ +...||+- .-..+.||.+.. |.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCcE
Confidence 45788888999999998765432 1221123467787777643 23455554 466788888731 11
Q ss_pred -eeeeeecCC--CcEEEEEeecC----CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC
Q 040533 121 -LIRNLEGHD--KRVATASWNHW----NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 121 -~~~~~~~~~--~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
.+..+..|. .....++.-|- ..+++++-+-||.+.+|+-+.-. ....+.. ---.-.+.|.+....|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 122222232 22233333221 24788899999999999955322 1222222 112234677787778999998
Q ss_pred CCeEEEEeCCCCCCC--------------------cceEEecccccce---eEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 194 DNLVHVWDHSKMSSS--------------------KCLHRFRDHRAAV---KALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 194 d~~i~iwd~~~~~~~--------------------~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
+..+..|........ .+..++. -...+ ..+.++.....+++.| ...+.+.+.
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~~ 269 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG----ERSLFCLKD 269 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe----cceEEEEcC
Confidence 888988875321110 0000111 11223 3333443444566654 577888776
Q ss_pred CCCeEEEEEecCCCeEEEE-E------cCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce--eEEeecC
Q 040533 251 QKGTCIHSVDTKAQICGLE-W------NRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI--LELSQSP 320 (364)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~-~------~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~i~~~~ 320 (364)
+|......+.+....++. + .+... .++.+ +.++.+.||.=. +.+...+....+| .-..|..
T Consensus 270 -~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~------t~t~~LlVy~d~--~L~WsA~l~~~PVal~v~~~~~ 340 (418)
T PF14727_consen 270 -NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVG------THTGTLLVYEDT--TLVWSAQLPHVPVALSVANFNG 340 (418)
T ss_pred -CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEE------ecCCeEEEEeCC--eEEEecCCCCCCEEEEecccCC
Confidence 566665555543333322 1 12211 23444 238889888633 3333322222332 2222333
Q ss_pred CCCEEEEEeCCCcEEEEEeeCCC
Q 040533 321 DGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 321 ~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
-...|++-+.+|.+.+-=+-+..
T Consensus 341 ~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 341 LKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCceEEEEcCCCcEEEEEeCCCC
Confidence 34478888999999887665543
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=94.27 E-value=5.6 Score=38.60 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=73.3
Q ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC--CCCCcceEEecccc----------cceeEEEEccCCCcEEEeecCC
Q 040533 174 AEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK--MSSSKCLHRFRDHR----------AAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 174 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
.+...++|+| +...||+....|...|||+.. .............. +.-..+.|.++...++++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---- 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---- 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE----
Confidence 4667899999 566999999999999999921 11111111111111 223478898887677776
Q ss_pred CCCeEEEEECCCCeEEE-E--EecCCCeEEEEEcCC--ccceeeeccCCccCCCCeEEEeeCCC
Q 040533 241 QDGCIKIWNVQKGTCIH-S--VDTKAQICGLEWNRH--HKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~-~--~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
....+.++|+.+..... . ......|..+.-+|. +..++.. ...|...++..
T Consensus 222 ~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--------s~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--------SKEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--------cCeEEEEEccC
Confidence 36789999999876533 2 223366888888887 3333333 56777777765
|
These proteins are found in fungi. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.03 E-value=4 Score=36.02 Aligned_cols=144 Identities=9% Similarity=0.176 Sum_probs=79.1
Q ss_pred CCEEEEEecCCcEEEEecCCcc-----eeeeeecCCCcEEEEEee---cCCCCEEEEeeCCCcEEEEEcccCcc------
Q 040533 99 AKTLAVGYMASKLQLWDAETSK-----LIRNLEGHDKRVATASWN---HWNGHILTSGSQDKSIINHDVRVSNN------ 164 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~------ 164 (364)
...+++|+..|.++||+...+. .+-..+ -..+|..+..- +......++.-.-..+.+|.+.....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4689999999999999985543 122222 34677777642 21232233334456777887743221
Q ss_pred --eeeeeeccc--CcEEEEEEcC----C-CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 165 --VTSRINAHT--AEVCGLKWSN----E-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 165 --~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
.+.....|. .....++.-| . ..++++-+.||.+.+|+-+.. .....+.. ---...+.+.+....+++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~---~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF---AFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE---EEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 122222332 2233344433 2 358889999999999994432 11122211 122234677776655555
Q ss_pred eecCCCCCeEEEEEC
Q 040533 236 SGGGTQDGCIKIWNV 250 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~ 250 (364)
+. .+..+..|..
T Consensus 192 ~s---ss~~l~~Yky 203 (418)
T PF14727_consen 192 AS---SSWTLECYKY 203 (418)
T ss_pred ec---CceeEEEecH
Confidence 43 4677777764
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.99 E-value=2.3 Score=33.05 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=81.2
Q ss_pred CCCEEEEeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCCcceEEeccc
Q 040533 141 NGHILTSGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL-ASGGDDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 141 ~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
++.++.+.+.-| .|++||+.+++......-. ...+..=-...-+..+ .-.-.+|.-..+|.++.+. +..+. .
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~---lg~~~-y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE---LGRFS-Y 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhh---hcccc-c
Confidence 566676666443 6999999977643322111 1111111111112222 2234677788888665432 33332 2
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe---cC---CCeEEEEEcCCccceeeeccCCccCCCCe
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---TK---AQICGLEWNRHHKEILSGHGFSSSGDGQK 291 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (364)
++.=+.++. ++..++.+.+ ..+++.-|.++.....++. .. ..++.+.|- +|...+-... ...
T Consensus 130 ~GeGWgLt~--d~~~LimsdG---satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~------t~~ 197 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDG---SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ------TTR 197 (262)
T ss_pred CCcceeeec--CCcceEeeCC---ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee------ecc
Confidence 333344443 5556777543 4556666665543333321 11 122333332 1222111111 334
Q ss_pred EEEeeCCCCceeeecc------------ccccceeEEeecCCC-CEEEEE
Q 040533 292 LCLWKYPHMTKWGELQ------------HQTSRILELSQSPDG-LTVVSA 328 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~------------~~~~~i~~i~~~~~~-~~l~~~ 328 (364)
|...+..+|+.+..+. .+..-.+.|++.|++ +++++|
T Consensus 198 I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 198 IARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4444555555443322 244567789999987 455555
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=4.8 Score=36.41 Aligned_cols=271 Identities=14% Similarity=0.070 Sum_probs=133.1
Q ss_pred CcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 44 NDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.+..+.++-++-++.+=++.+..+..||..+++..+.... ....+|..+..+-.| .|.+|+.+| |.+.+.+..+...
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~-~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASP-PLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred cCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCC-cchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 3444566666666666666677788888888876544332 223566666666555 477787666 7888766533222
Q ss_pred eeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc--cCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 124 NLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH--TAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 124 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.... ..+.|..+.-. ....+-.|+..|..+. ............+.| -+.|.++....+|. |-+++.++.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQD--AQGELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecc--cCCCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEe
Confidence 1111 22334433332 2334555666664432 222121111111111 24456666666664 5666667666654
Q ss_pred eCCCCCCCcceEEeccccc-ceeEEEEcc--CCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCcc
Q 040533 201 DHSKMSSSKCLHRFRDHRA-AVKALAWCP--YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHK 275 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~ 275 (364)
+-.- .....+....+ .+...+..| .+..+... ...|.+.+-+-.++..++.... +..|+.+++..++.
T Consensus 316 ~a~w----~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~---ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~ 388 (671)
T COG3292 316 TADW----KRMAVINDSDGGVSQYEAVAPALLSWGVRQL---NSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGR 388 (671)
T ss_pred cchh----hheeeeecCCCchhhhhccCchhcccceeec---cccceEEEecCCCCcEEEEeeeccccccchhhhccCCc
Confidence 4211 11111111111 111111122 11111111 1233444445555655554321 24466666666555
Q ss_pred ceeeeccCCccCCCCeEEEeeCCC-Cceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
.-+... .+-+..|+.++ +-.+.+..+ ..++|..+.=.|+++ |..|+.+|.++.
T Consensus 389 lWlgs~-------q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 389 LWLGSM-------QNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEEec-------ccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 544332 44555566555 333333322 346788888889988 777888886654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=4.3 Score=35.72 Aligned_cols=146 Identities=11% Similarity=0.166 Sum_probs=79.7
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCc--
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK-- 209 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-- 209 (364)
..+..++ ++.+++.+.....++-||- +... ..........+..+.|.+++..++++ ..|.+.. ....+....
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 3344555 6666666554433333442 2211 11222334568899999998877665 5665543 222221110
Q ss_pred ceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEcCCccceeeeccC
Q 040533 210 CLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 210 ~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
....... ....+.++.|.+++ .++++| ..|.+.... ..|+.-.... .....+.+.|.++++.+++|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~-~~~a~G---~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-- 389 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKK-EAWAAG---GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-- 389 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCC-cEEEEE---CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC--
Confidence 1222211 12347889998876 567766 477666553 4444433322 235688999988888888764
Q ss_pred CccCCCCeEEEe
Q 040533 284 SSSGDGQKLCLW 295 (364)
Q Consensus 284 ~~~~~~~~i~i~ 295 (364)
+|.|.-|
T Consensus 390 -----~G~il~~ 396 (398)
T PLN00033 390 -----DGVLLRY 396 (398)
T ss_pred -----CcEEEEe
Confidence 6666544
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.71 E-value=2.1 Score=38.00 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=82.9
Q ss_pred EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-------EEEEEecCCcEEEEecC-CcceeeeeecCCCcEE
Q 040533 62 ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-------TLAVGYMASKLQLWDAE-TSKLIRNLEGHDKRVA 133 (364)
Q Consensus 62 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~ 133 (364)
+....++-.|++.|+++....+ |.+ | -+.|.|+.+ .-++|-.+..|.-.|.+ .|..+...+ ....++
T Consensus 487 ~~~~kLykmDIErGkvveeW~~--~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~t 561 (776)
T COG5167 487 GERDKLYKMDIERGKVVEEWDL--KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKT 561 (776)
T ss_pred CCcccceeeecccceeeeEeec--CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccc
Confidence 3445777778888887655543 232 3 567777432 23345556566555643 232222222 112222
Q ss_pred EEEeec---CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 134 TASWNH---WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 134 ~~~~~~---~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.-.|+. +...++++++..|-|++||-- +......+.+....|..+..+.+|+++++.+ ...+.+-|++
T Consensus 562 Kn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 222221 156789999999999999954 3333556677788899999999999877666 4567787765
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.58 E-value=1 Score=34.42 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=24.9
Q ss_pred CcEEEEEEcCCC------CEEEEEeCCCeEEEEeCC
Q 040533 174 AEVCGLKWSNEG------NLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 174 ~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~ 203 (364)
..+..++|||.| .+|++.+.++.|.+|.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378999999954 488999999999999744
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.76 Score=36.60 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=43.3
Q ss_pred EcCCCCEEEEEecCCcEEEEecCCcceeeee-------e-------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNL-------E-------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 95 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
+..++++|++-+.+|.+++||+.+++.+..- . .....|..+..+. +|.-+++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccc
Confidence 4457889999999999999999988764321 1 2345566666665 665555543 4566777654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=93.48 E-value=4.2 Score=34.38 Aligned_cols=234 Identities=9% Similarity=-0.055 Sum_probs=109.9
Q ss_pred CCCEEEEEecCCcEEEEecCC--cceeeeeecCCCcEEEEEeecCCCCEEEE-eeCCCcEEEEEcccCcc----------
Q 040533 98 DAKTLAVGYMASKLQLWDAET--SKLIRNLEGHDKRVATASWNHWNGHILTS-GSQDKSIINHDVRVSNN---------- 164 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~---------- 164 (364)
++++|+.|+++| +.+.++.. ++..+.+ +..+|+++...+ ..+.|++ ++....++.+++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~-~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~ 87 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLE-ENNVLLMISGKKPQLYSHPLSALVEKKEALGSARL 87 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEh-hhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccc
Confidence 336899999988 45555554 2333332 466899999998 5555544 44455699999853321
Q ss_pred ----eeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCC-CCcceEEe---c-ccccceeEEEEccCC-CcE
Q 040533 165 ----VTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMS-SSKCLHRF---R-DHRAAVKALAWCPYQ-FNV 233 (364)
Q Consensus 165 ----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~---~-~~~~~v~~~~~~~~~-~~~ 233 (364)
.......+......+...... ..++++....+|.++...... .......+ . ....++..+..+++. ...
T Consensus 88 ~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 88 VIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred cccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence 001111333333333333221 233444455667776443221 11111110 0 011233333333321 223
Q ss_pred EEeecCCCCCeEEEEECCC--CeEEE----E-EecCC-CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee--
Q 040533 234 LASGGGTQDGCIKIWNVQK--GTCIH----S-VDTKA-QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW-- 303 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~--~~~~~----~-~~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~-- 303 (364)
+..|. ..+-..++++.. ..... . ..... ...++..-+++.++++- +....+-|....+..
T Consensus 168 lcvG~--~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~--------~~~~v~Vn~~G~~~~r~ 237 (302)
T smart00036 168 ICIGS--DKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY--------DEFGVFVNLYGKRRSRN 237 (302)
T ss_pred EEEEE--cCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE--------CcEEEEEeCCCCccccc
Confidence 44443 222344444422 11000 0 00111 23333333445666554 555555565431111
Q ss_pred eeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 304 GELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 304 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
..+.. .....++++. ..+|+.-+. ..|.|+++.+++.++.+.
T Consensus 238 ~~l~w-~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 238 PILHW-EFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELA 279 (302)
T ss_pred eEEEc-CCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEe
Confidence 12222 2345677775 357776654 459999999988776664
|
Unpublished observations. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.38 Score=41.67 Aligned_cols=170 Identities=14% Similarity=0.067 Sum_probs=93.3
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cC----cEE-EEEEcCCCCEEEEEeCCCeEE
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TA----EVC-GLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~----~v~-~~~~~~~~~~l~~~~~d~~i~ 198 (364)
+......|..+-..| +++.+..-+. .++.++++.+..-..+.+... .+ .|+ .+..-..|.-+.+++.||-|.
T Consensus 216 L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 216 LSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred cCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 444456677788889 8988777655 678888887554222221111 11 111 111223456788888999887
Q ss_pred EE-eCCCCCCCc--ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcc
Q 040533 199 VW-DHSKMSSSK--CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275 (364)
Q Consensus 199 iw-d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 275 (364)
-| |++...... .++.++-....+..+.-.. .+..+++-. ..|++.++.....+.+-.-..-....-+++||.+.
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~--~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLY--RNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEc--CCCceeeeecccCcceehhhhhcCcceeeeCcccc
Confidence 66 555443211 1112221222332222111 222333332 67777776654444332222223567789999999
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
++++- +.|.++++.+++..+..++
T Consensus 371 ~Ll~e-------~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 371 YLLSE-------DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred hheee-------cCCceEEEEecCCCCCccH
Confidence 99874 3789999998876554433
|
|
| >COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.24 E-value=5.2 Score=34.77 Aligned_cols=180 Identities=13% Similarity=0.159 Sum_probs=96.0
Q ss_pred cEEEEecCCcceeeeeec--CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC--CC
Q 040533 110 KLQLWDAETSKLIRNLEG--HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN--EG 185 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 185 (364)
.|.|.| +....+..+++ ...+|.++.|.. +--++++--.---+.+.|+.+.+.+.. +..-.-+-.+--.+| ++
T Consensus 407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~g-dv~yiVTfrqtDPlfviDlsNPenPkv-lGeLKIPGfS~YLHpigen 483 (603)
T COG4880 407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVG-DVLYIVTFRQTDPLFVIDLSNPENPKV-LGELKIPGFSEYLHPIGEN 483 (603)
T ss_pred eeEEEc-CCCcEEEEEeccCCCceEEEEEEeC-ceEEEEEEeccCceEEEEcCCCCCCce-eEEEecCCchhhccccCCC
Confidence 355555 34555566654 467899999965 555666665556788889887664321 111111111112345 45
Q ss_pred CEEEEEeCCCe--EEEEeCCCCCCCcceEEecccc------cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE
Q 040533 186 NLLASGGDDNL--VHVWDHSKMSSSKCLHRFRDHR------AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 186 ~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 257 (364)
.+|-.|-.+|. |.++|+.....++.+....-.. ..-.+..|+|...-++.-+. ..|. ++.++.|..+.
T Consensus 484 ~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay--~~gy--if~iedg~kl~ 559 (603)
T COG4880 484 RLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAY--LGGY--IFFIEDGSKLR 559 (603)
T ss_pred cEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEeccc--CccE--EEEEecCceee
Confidence 67777777775 5578988766554443332111 11234555665544444433 4555 44444443322
Q ss_pred E-EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee
Q 040533 258 S-VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305 (364)
Q Consensus 258 ~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 305 (364)
. -.+...+...-|..+--+++. ...+.++|-.+.+.+.+
T Consensus 560 k~~e~k~na~RA~fi~dylY~vg---------~~ev~~ldenswe~Vge 599 (603)
T COG4880 560 KRAERKLNADRAFFIKDYLYLVG---------GNEVWKLDENSWEVVGE 599 (603)
T ss_pred ehhhhcccceeeEEecceEEEec---------cceeEEeccchHhhhhh
Confidence 2 233444555555555555543 45677777666655543
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.9 Score=34.68 Aligned_cols=90 Identities=19% Similarity=0.379 Sum_probs=57.6
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeec-----ccCcEE
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINA-----HTAEVC 177 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~-----~~~~v~ 177 (364)
..|++||..+.+....-.+-.+.|+.+.|.. +.++++.|. ....+..||+.+.. ...+.. -.++|.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcEE
Confidence 3599999887776655555678899999985 666777664 34568889987554 323322 247788
Q ss_pred EEEEcC-CCC-EEEEEe-C--CCeEEEEe
Q 040533 178 GLKWSN-EGN-LLASGG-D--DNLVHVWD 201 (364)
Q Consensus 178 ~~~~~~-~~~-~l~~~~-~--d~~i~iwd 201 (364)
.+.+.. ++. ..+.|. . +..|..||
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 887744 333 333333 2 33567776
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=92.59 E-value=3.9 Score=33.94 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=58.6
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe------cCCcEEEEecCCcceeeeeec-----CCCcEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY------MASKLQLWDAETSKLIRNLEG-----HDKRVA 133 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~-----~~~~v~ 133 (364)
..|.+||..+.+....-. +-.+.|+++.|..+.+.++.|. ....+..||.++.... .+.. -.++|.
T Consensus 16 ~~lC~yd~~~~qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence 589999999888755543 4567899999986666676664 3446888998776542 2222 247888
Q ss_pred EEEeecCCCC-EEEEee-CCC--cEEEEE
Q 040533 134 TASWNHWNGH-ILTSGS-QDK--SIINHD 158 (364)
Q Consensus 134 ~~~~~~~~~~-~l~~~~-~dg--~i~~~d 158 (364)
.+.+...+.. +.+.|. .+| .|..||
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 8888554554 443443 333 344554
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.59 E-value=5.2 Score=35.80 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=21.9
Q ss_pred eeEEeecCCC---CEEEEEeCCCcEEEEEeeCCCCC
Q 040533 313 ILELSQSPDG---LTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 313 i~~i~~~~~~---~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
+..++|+|+. ..|..-+.|+.||+|++...+.+
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 4556677754 46666677778888877766554
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=92.57 E-value=11 Score=36.63 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=48.9
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec----cc---------------cccceeEEeecCCCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL----QH---------------QTSRILELSQSPDGL 323 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~----~~---------------~~~~i~~i~~~~~~~ 323 (364)
..|.++....-+..++.... ||.|.++|..+.+.+... .. ....+..++|||.+.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~------DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c 333 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFS------DGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC 333 (753)
T ss_pred CeEEEEEecccCcEEEEEEc------CCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc
Confidence 45777777777777777655 999999999887665444 10 011344588999999
Q ss_pred EEEEEeCCCcEE
Q 040533 324 TVVSAAADETLR 335 (364)
Q Consensus 324 ~l~~~~~dg~i~ 335 (364)
.++.-..+|.+.
T Consensus 334 ~~v~~~~~~~~~ 345 (753)
T PF11635_consen 334 SLVQIDEDGKTK 345 (753)
T ss_pred eEEEEecCCCce
Confidence 999999999866
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.31 E-value=4.1 Score=36.42 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=50.5
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEec---------CCcceeeeee-----------cCCCcEEEEEeecCC--CCEEE
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDA---------ETSKLIRNLE-----------GHDKRVATASWNHWN--GHILT 146 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~--~~~l~ 146 (364)
.|..+..++.|..++-.+.+|.+..+=. ++|+.....+ ...-.+..++|+|.. +..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4677888999999998888886554421 2333221111 112245678899955 57888
Q ss_pred EeeCCCcEEEEEcccCc
Q 040533 147 SGSQDKSIINHDVRVSN 163 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~ 163 (364)
.-+.|..+++||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999987544
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.1 Score=38.94 Aligned_cols=163 Identities=20% Similarity=0.129 Sum_probs=92.7
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee-eee-ecCCC----cEE-EEEeecCCCCEEEEeeCCCcEE
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI-RNL-EGHDK----RVA-TASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
+......|..+-..|||+.|..-+. ..+.|+++.+.... +++ ....+ .|+ .+..-. .+.-+.+++.||.|.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vs 293 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVS 293 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCcee
Confidence 3344567788889999998877654 67899988754321 111 11111 122 112222 567788889999888
Q ss_pred EE-EcccCcce----eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC
Q 040533 156 NH-DVRVSNNV----TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230 (364)
Q Consensus 156 ~~-d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (364)
-| |++.+... ++.++-...++..+.-..+.+-+++-+..|++.++.-... +.+. +..--..+.-++++|.+
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~---~~lL-~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE---KLLL-FERAYQAPQLVAMSPNQ 369 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC---ccee-hhhhhcCcceeeeCccc
Confidence 76 55443321 1111112233333322223456777778888877753321 1111 12222356678999999
Q ss_pred CcEEEeecCCCCCeEEEEECCCCeE
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.+++.- ..|.++++.+++..+
T Consensus 370 ~~Ll~e----~~gki~~~~l~Nr~P 390 (733)
T COG4590 370 AYLLSE----DQGKIRLAQLENRNP 390 (733)
T ss_pred chheee----cCCceEEEEecCCCC
Confidence 777764 468899998877543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=92.03 E-value=2.4 Score=28.05 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=32.2
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
.+|.+.-||..+++....+..-.-.+.+++++++.+++.+.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 68999999999998766666666789999999999888764
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=91.99 E-value=7.2 Score=33.33 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=51.8
Q ss_pred CCCEEEEEecCC-----cEEEEecCCcce---eeeeecCCCcE--EEEEeecCCCCEEEEeeCC-----CcEEEEEcccC
Q 040533 98 DAKTLAVGYMAS-----KLQLWDAETSKL---IRNLEGHDKRV--ATASWNHWNGHILTSGSQD-----KSIINHDVRVS 162 (364)
Q Consensus 98 ~~~~l~~~~~dg-----~i~iw~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~ 162 (364)
++.+++.|+.++ .+..||+.+.+. ...+..-..+. .+++.. ++.+.+.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 456667776542 467777766553 12221111111 122222 67777777642 35778888765
Q ss_pred cceeeeeec--ccCcEEEEEEcCCCCEEEEEeCCC----eEEEEeCCCC
Q 040533 163 NNVTSRINA--HTAEVCGLKWSNEGNLLASGGDDN----LVHVWDHSKM 205 (364)
Q Consensus 163 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~ 205 (364)
+- ..+.. ........+...++++.+.|+.++ .+..||..+.
T Consensus 150 ~W--~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 150 EW--FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred Ce--eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 42 21211 111111222233567777777654 3567887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.95 E-value=13 Score=36.21 Aligned_cols=161 Identities=11% Similarity=0.110 Sum_probs=99.4
Q ss_pred CCCCCceEEEEc---C----CCCEEEEEecCCcEEEEecCCc---------------ceeeeeec---CCCcEEEEEeec
Q 040533 85 GEDDFPTSISWS---Q----DAKTLAVGYMASKLQLWDAETS---------------KLIRNLEG---HDKRVATASWNH 139 (364)
Q Consensus 85 ~~~~~v~~~~~s---~----~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~---~~~~v~~~~~~~ 139 (364)
.-..+|..|+|. . ..++|++= ....+.|+...-. ..+..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 346788899998 2 22455554 4567788772211 12223331 345678899999
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCc----ceeeeeecccC----------cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSN----NVTSRINAHTA----------EVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+...||.....|...||++.... ........+.+ .-..+.|.++.+.|++++. ..+.++|++..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 888999999999999999992111 11111111112 2346888888778887764 46899998876
Q ss_pred CCCcceEEecccccceeEEEEccCCC-cEEEeecCCCCCeEEEEECCC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQF-NVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.....+. .......|..+.-+|... ++++. ....|...++..
T Consensus 235 ~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiL----Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLV-TAKTWSWILDVKRSPDNPSHVFIL----TSKEIIWLDVKS 277 (765)
T ss_pred Cccchhc-cCCChhheeeEEecCCccceEEEE----ecCeEEEEEccC
Confidence 5433222 223456788888888732 22222 246788888876
|
These proteins are found in fungi. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.71 E-value=4.6 Score=40.25 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=89.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEE--------EccCCCcEEEeecCCCCCeEEEE
Q 040533 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA--------WCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
..+-+-|.=.. +-.+.|+.+.+|+.++... ...+.+-...|..+. |-|.=+++++.+. --.|.++
T Consensus 82 ~~mGiFpeI~R-aWiTiDn~L~lWny~~~~e---~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~il 154 (1311)
T KOG1900|consen 82 TDMGIFPEIGR-AWITIDNNLFLWNYESDNE---LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVIL 154 (1311)
T ss_pred eeeccchhhcc-eEEEeCCeEEEEEcCCCCc---cccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEE
Confidence 34444453222 2234588999999987544 444444444454443 3344446666653 4445555
Q ss_pred ECCC----CeE-----EEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-----c---e--------
Q 040533 249 NVQK----GTC-----IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-----T---K-------- 302 (364)
Q Consensus 249 d~~~----~~~-----~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-----~---~-------- 302 (364)
-+.- +.. ..++.. +..|.++....+|+.+++|. ||.|+=.-.... + .
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-------dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~l 227 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-------DGNLYELVYQAEDGWFGSRCRKICLTKSVL 227 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-------CCCEEEEEEeccCchhhcccccccCchhHH
Confidence 4321 111 012222 45688999888999998875 664432221110 0 0
Q ss_pred ------eeecc-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 303 ------WGELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 303 ------~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+..+. .+..+|..++.......+.+-+..|+|.+|++..
T Consensus 228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11222 4567999999988888999999999999999987
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=91.67 E-value=8.4 Score=33.47 Aligned_cols=188 Identities=13% Similarity=0.175 Sum_probs=103.4
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc----CCCCE--EEEEe-CC---CeEEEEeCCCCCCCcc
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS----NEGNL--LASGG-DD---NLVHVWDHSKMSSSKC 210 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---~~i~iwd~~~~~~~~~ 210 (364)
...+++...+++-+.+||+.... +..+. .+.++-+..- -.|+. |+.++ .+ ..|++|.+... .. .
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~--lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~-~g-~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKE--LQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD-TG-E 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-E--EEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT-TT-E
T ss_pred ccceEEEEeCCCCEEEEcCCCcE--EEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC-CC-c
Confidence 55688888888999999997432 33332 2333333221 13332 44444 32 46999977532 11 2
Q ss_pred eEEecc-------cccceeEEEE--cc-CCCcEEEeecCCCCCeEEEEECC---CC----eEEEEEecCCCeEEEEEcCC
Q 040533 211 LHRFRD-------HRAAVKALAW--CP-YQFNVLASGGGTQDGCIKIWNVQ---KG----TCIHSVDTKAQICGLEWNRH 273 (364)
Q Consensus 211 ~~~~~~-------~~~~v~~~~~--~~-~~~~~~~~~~g~~d~~i~i~d~~---~~----~~~~~~~~~~~v~~~~~~~~ 273 (364)
+..+.. ....++.+++ +| ++...+.... .+|.+..|.+. ++ +.++.+...+++..+.....
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE 218 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence 332221 1223666776 33 3444444443 78988888774 33 56888888899999999999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCC-----Cceeeeccc--cccceeEEeec--CCC-CEEEEE-eCCCcEEEEEeeCC
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPH-----MTKWGELQH--QTSRILELSQS--PDG-LTVVSA-AADETLRFWEAFGP 342 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~--~~~~i~~i~~~--~~~-~~l~~~-~~dg~i~vw~~~~~ 342 (364)
...|+.+. ++.-|.-|+.+- ++.+....+ ....|-.|++- +++ .||++. -.+++..||+....
T Consensus 219 ~g~LYvgE------E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 219 TGRLYVGE------EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTEEEEEE------TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cCCEEEec------CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999884 366677776642 222322222 23456666664 343 355444 45778999997754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.59 E-value=2.1 Score=39.72 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=43.7
Q ss_pred CCccEEEEEeCCeEEEEECCC----Cceeeeeeec--------------------CCCCCceEEEEcC----CCCEEEEE
Q 040533 54 GRNNILAIALGLELYLWKQEN----GEVQKLLKVT--------------------GEDDFPTSISWSQ----DAKTLAVG 105 (364)
Q Consensus 54 ~~~~~~~~~~~~~i~iw~~~~----~~~~~~~~~~--------------------~~~~~v~~~~~s~----~~~~l~~~ 105 (364)
++..++.+..||.+....... +......... .....+..+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556677777888877777654 1111111000 1123456667766 67899999
Q ss_pred ecCCcEEEEecCCcceeeeee
Q 040533 106 YMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 106 ~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.|+++++||+.+++++....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999866543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=91.53 E-value=12 Score=35.03 Aligned_cols=166 Identities=15% Similarity=0.166 Sum_probs=83.8
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--eeec-CCCcEEEEEeecC-----CCCEEEEeeC-CC---cE
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NLEG-HDKRVATASWNHW-----NGHILTSGSQ-DK---SI 154 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~~-----~~~~l~~~~~-dg---~i 154 (364)
.+.|..+.|.++++.+++...+|.|.+||...+.... .+.. +...+.-=.|-+. ..+++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6678999999999999999999999999993332211 2211 1111111122221 2345554444 32 45
Q ss_pred EEEEcccCcceeeeee---cccCcE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe---cccccceeEEEE
Q 040533 155 INHDVRVSNNVTSRIN---AHTAEV--CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF---RDHRAAVKALAW 226 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~---~~~~~v--~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~ 226 (364)
+++.+.........+. .+.... ..+++. +|.+..- .++.|.+|++...+..+.+... ......+.++.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~- 284 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK- 284 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee-
Confidence 6676622221122221 111112 223332 4543322 5778999998665332211111 11112233332
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
.|..++++.+ .++.|++.|+.-...+.+++
T Consensus 285 ~~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 PPSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cCCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 2333356665 47899999997665555544
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=91.51 E-value=3.1 Score=38.83 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=50.4
Q ss_pred ECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE
Q 040533 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 249 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 328 (364)
|+-.|.....+.+.+.|.-+..+..+..++.- ...-.+.++|+.+.+....+ +-.+-+.|-|....++.-
T Consensus 324 dli~g~~~~~inh~~~vdwielne~~~kllfr------dkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaq 393 (1636)
T KOG3616|consen 324 DLIGGQNEGFINHEGAVDWIELNERAHKLLFR------DKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQ 393 (1636)
T ss_pred ecccCcccccccccccccceeccchhhhhhcc------cccceeEEEEcccchHHHHH----HHhhhheeccCcceEEec
Confidence 33334444444445555555555555544433 12455677777654432222 223567899988888877
Q ss_pred eCCCcEEEEEeeCCCCCccee
Q 040533 329 AADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 329 ~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+.|+...-|++..++.+..+.
T Consensus 394 n~dnl~iwyn~d~peqvt~~k 414 (1636)
T KOG3616|consen 394 NGDNLCIWYNIDAPEQVTMFK 414 (1636)
T ss_pred CCCceEEEecCCcchhheeeE
Confidence 777555455666666655443
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.44 E-value=15 Score=36.02 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=49.4
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECC-CCceeeeeeecCCCCCceEEEEcCCC------CEEEEEecCCcEEEEecCCc
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQE-NGEVQKLLKVTGEDDFPTSISWSQDA------KTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~dg~i~iw~~~~~ 119 (364)
.+...+.+...++.+-+++.+..+... +++.....+-..-...|.|+++.+++ ++++.|+.|+.++++.+...
T Consensus 541 ~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~ 620 (1205)
T KOG1898|consen 541 RIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPS 620 (1205)
T ss_pred EEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCc
Confidence 344444444445555566666666543 44433333222346678999998865 58999999999999998755
Q ss_pred ceeeee
Q 040533 120 KLIRNL 125 (364)
Q Consensus 120 ~~~~~~ 125 (364)
..+..+
T Consensus 621 d~l~~l 626 (1205)
T KOG1898|consen 621 DCLQPL 626 (1205)
T ss_pred ceEEEc
Confidence 554443
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.43 E-value=16 Score=36.39 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=97.4
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC---------CCCEEEEEec---------CCcEEEEecCC----
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ---------DAKTLAVGYM---------ASKLQLWDAET---- 118 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~---------~~~~l~~~~~---------dg~i~iw~~~~---- 118 (364)
-+....|.+.+..+.+.....+++ ...-|++++... ...+||+|.. .|.++|||+-.
T Consensus 1000 ~~~~f~i~LisP~sw~vi~~iefq-~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPe 1078 (1366)
T KOG1896|consen 1000 EGEQFSIQLISPESWEVIDKIEFQ-ENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPE 1078 (1366)
T ss_pred ccccceeEEecCCccccccccccC-ccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCC
Confidence 334467777777777766555553 233455555431 1358888863 48899999732
Q ss_pred -cce-----eeee--ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEE
Q 040533 119 -SKL-----IRNL--EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 119 -~~~-----~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
|++ ++.+ +..+++|..++=- +|.++.+- .-.|.+|+++....++- .+-. -++.-....--.++|+
T Consensus 1079 pgkP~t~~KlKel~~eE~KGtVsavceV--~G~l~~~~--GqKI~v~~l~r~~~ligVaFiD--~~~yv~s~~~vknlIl 1152 (1366)
T KOG1896|consen 1079 PGKPFTKNKLKELYIEEQKGTVSAVCEV--RGHLLSSQ--GQKIIVRKLDRDSELIGVAFID--LPLYVHSMKVVKNLIL 1152 (1366)
T ss_pred CCCCcccceeeeeehhhcccceEEEEEe--ccEEEEcc--CcEEEEEEeccCCcceeeEEec--cceeEEehhhhhhhee
Confidence 221 2211 2356777777643 56554433 34799999954443222 1211 2222222223355777
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
.|.--..|.+.-.... +..+..+.. ..-.+.++.|--+|..+-...+ ..++.|++|-..
T Consensus 1153 ~gDV~ksisfl~fqee--p~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs-Da~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1153 AGDVMKSISFLGFQEE--PYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS-DADRNIHVYMYA 1213 (1366)
T ss_pred hhhhhhceEEEEEccC--ceEEEEeecCCchhhceeeeeEEcCCeeEEEEE-cCCCcEEEEEeC
Confidence 7776666766554332 122222211 2335777888777766533332 378888888543
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.42 E-value=6.6 Score=39.25 Aligned_cols=156 Identities=12% Similarity=0.193 Sum_probs=88.3
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEe--------ecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASW--------NHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 91 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
+.+-+-|.=.+.... -|+.+.+|+.+++.....+.+-...|..+.. .| .=++++....--.|.++-+.-.
T Consensus 82 ~~mGiFpeI~RaWiT-iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT-IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEEE-eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEEEEEec
Confidence 344444543333333 4789999999998777777766666666543 23 2233444444445666654322
Q ss_pred cc--eee------eeecccCcEEEEEEcCCCCEEEEEeCCCeEEE--EeCCCCCCC-----------------cceEEec
Q 040533 163 NN--VTS------RINAHTAEVCGLKWSNEGNLLASGGDDNLVHV--WDHSKMSSS-----------------KCLHRFR 215 (364)
Q Consensus 163 ~~--~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i--wd~~~~~~~-----------------~~~~~~~ 215 (364)
.. ... .+......|+++....+|+.+++| .||.|+- |....+-.. ..+..+.
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 11 011 122234568899877888777655 5664432 221111000 0012222
Q ss_pred -ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 216 -DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 216 -~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.+..+|..++..... .++.+-+ ..++|.+||+..
T Consensus 239 ~~~~dpI~qi~ID~SR-~IlY~ls--ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSR-NILYVLS--EKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCcceeeEecccc-ceeeeec--cCceEEEEEccC
Confidence 456789999988655 5666654 899999999976
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=91.28 E-value=11 Score=34.19 Aligned_cols=134 Identities=11% Similarity=0.058 Sum_probs=64.7
Q ss_pred eEEEEECCCCceeeeeeecCCCC--CceEEEEcCCCCEEEEEecC-----CcEEEEecCCcceeeeeec----CCCcEEE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDD--FPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSKLIRNLEG----HDKRVAT 134 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----~~~~v~~ 134 (364)
.+.+||+.+.+............ ........-++.+.+.|+.+ ..+..||+.+.+....-.. ....-.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 57888888876643221100010 11111112245666777654 3588899887644322111 1111112
Q ss_pred EEeecCCCCEEEEeeCCC-----cEEEEEcccCcceeeeeec------ccCcEEEEEEcCCCCEEEEEeCC----CeEEE
Q 040533 135 ASWNHWNGHILTSGSQDK-----SIINHDVRVSNNVTSRINA------HTAEVCGLKWSNEGNLLASGGDD----NLVHV 199 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d----~~i~i 199 (364)
++. - ++.+++.|+.++ .+..||+.+..- ..... ..... .++. -++++++.++.+ ..+.+
T Consensus 274 ~~~-~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~ 347 (470)
T PLN02193 274 MAA-D-EENVYVFGGVSATARLKTLDSYNIVDKKW--FHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHY 347 (470)
T ss_pred EEE-E-CCEEEEECCCCCCCCcceEEEEECCCCEE--EeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEE
Confidence 222 2 677777777653 366777765432 11111 11111 1221 256677777654 45888
Q ss_pred EeCCCC
Q 040533 200 WDHSKM 205 (364)
Q Consensus 200 wd~~~~ 205 (364)
||+.+.
T Consensus 348 yD~~t~ 353 (470)
T PLN02193 348 YDPVQD 353 (470)
T ss_pred EECCCC
Confidence 997764
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.6 Score=23.74 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCCEEEEEe-cCCcEEEEecCCcceeeeeec
Q 040533 97 QDAKTLAVGY-MASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 97 ~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 127 (364)
|++++|.++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666655 578999999998888877765
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=88.87 E-value=14 Score=31.58 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=32.7
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC----cEEEEecCCcce
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS----KLQLWDAETSKL 121 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~~ 121 (364)
..+..||+.+.+...+..+.... .....+...++++.+.|+.++ .+.+||.++.+.
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 46888898888775554332211 122222334667777787654 356888877653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.71 E-value=2 Score=23.06 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=21.0
Q ss_pred cccceeEEEEccCCCcEEEeecCCCC--CeEEEE
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQD--GCIKIW 248 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d--~~i~i~ 248 (364)
....-....|+|+|+.++.+.. .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~--~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSN--RNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEE--CT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEec--CCCCCCcCEE
Confidence 3455678899999998888875 55 666555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=88.54 E-value=16 Score=31.92 Aligned_cols=226 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCEEEEEecCCcEEEEecCCcceeeeeecCC--CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-Cc
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLIRNLEGHD--KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AE 175 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~ 175 (364)
...+.++..+|.|.-.|.++++.+.....-. ..+..-.+.. +++ ++.++.+|.+..+|.++++. .-...... -.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC--CCeEEEEECCCC
Q 040533 176 VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ--DGCIKIWNVQKG 253 (364)
Q Consensus 176 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--d~~i~i~d~~~~ 253 (364)
+..-..-.++..++.. .++.+...|..++...-....... ......-... .....+..+. . ++.+.-.|..+|
T Consensus 145 ~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~-~~~~~vy~~~--~~~~~~~~a~~~~~G 219 (370)
T COG1520 145 YASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA-IASGTVYVGS--DGYDGILYALNAEDG 219 (370)
T ss_pred EecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc-cccccccCce-eecceEEEec--CCCcceEEEEEccCC
Q ss_pred eEEEEEecCCCeEEEEE----cCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 254 TCIHSVDTKAQICGLEW----NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 254 ~~~~~~~~~~~v~~~~~----~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
...........+..-.. .-.+..+.+.......+.++.+.-.+..+++.+.++... ......+-+...-.
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~------~~~~~~~~~~~~~~ 293 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG------GSVQGSGLYTTPVA 293 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc------cEeccCCeeEEeec
Q ss_pred C-CCcEEEEE
Q 040533 330 A-DETLRFWE 338 (364)
Q Consensus 330 ~-dg~i~vw~ 338 (364)
. ||.+.++.
T Consensus 294 ~~dG~v~~~~ 303 (370)
T COG1520 294 GADGKVYIGF 303 (370)
T ss_pred CCCccEEEEE
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.43 E-value=16 Score=31.80 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=106.6
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC----CCCE--EEEEec-C---CcEEEEecCC--cceeeee
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ----DAKT--LAVGYM-A---SKLQLWDAET--SKLIRNL 125 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~--l~~~~~-d---g~i~iw~~~~--~~~~~~~ 125 (364)
+++...++-+.+||++..+...+ . .+.++.+..-. .|+. ||+++. + ..|++|.+.. +. +..+
T Consensus 71 IigTdK~~GL~VYdL~Gk~lq~~-~----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 71 IIGTDKKGGLYVYDLDGKELQSL-P----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp EEEEETTTEEEEEETTS-EEEEE------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred EEEEeCCCCEEEEcCCCcEEEee-c----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 55566778999999987765332 2 22344333321 3332 445543 2 4699998753 33 3332
Q ss_pred ec-------CCCcEEEEEe--ecCCCC-EEEEeeCCCcEEEEEcccCc------ceeeeeecccCcEEEEEEcCCCCEEE
Q 040533 126 EG-------HDKRVATASW--NHWNGH-ILTSGSQDKSIINHDVRVSN------NVTSRINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 126 ~~-------~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
.. ....+..+|+ +|.++. +++....+|.+..|.+.... .+++.+.. ...+..+........|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 21 1234566665 443444 66677889999888876322 23444433 34688888888888999
Q ss_pred EEeCCCeEEEEeCCCCCC--CcceEEecc--cccceeEEEEc--cCC-CcEEEeecCCCCCeEEEEECCCC-eEEEEE
Q 040533 190 SGGDDNLVHVWDHSKMSS--SKCLHRFRD--HRAAVKALAWC--PYQ-FNVLASGGGTQDGCIKIWNVQKG-TCIHSV 259 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~--~~~~~~~~~--~~~~v~~~~~~--~~~-~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~ 259 (364)
.+-++.-|.-|+.+.... ...+....+ ....|..|+.- +++ .+++++.- -+++..+|+.+.. ..+..+
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ--G~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ--GDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG--GGTEEEEEESSTT--EEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC--CCCeEEEEecCCCCcccceE
Confidence 999998888888763322 222222222 23467777764 333 35666654 5789999998753 334333
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=88.42 E-value=12 Score=30.44 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=75.4
Q ss_pred EEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEEeC-C--CeEEEEeCCCCCCCcceEEe---cccccceeEEEE
Q 040533 154 IINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASGGD-D--NLVHVWDHSKMSSSKCLHRF---RDHRAAVKALAW 226 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~ 226 (364)
-.+||+.+... +.+. ....-..+-.+-+||+++.+|+. + ..+++++............. -....+--+...
T Consensus 48 s~~yD~~tn~~--rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTF--RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcE--EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 34788876652 2221 12222334457789999998874 2 35778875430000000000 012233345556
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCC--eEEE--EEec------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKG--TCIH--SVDT------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~--~~~~------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
-|+|+ +++.|| +...+..+|.-... .... .+.. ..--..+...|+|+.++.+ +..-.|||
T Consensus 126 L~DG~-vlIvGG-~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a--------n~~s~i~d 195 (243)
T PF07250_consen 126 LPDGR-VLIVGG-SNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA--------NRGSIIYD 195 (243)
T ss_pred CCCCC-EEEEeC-cCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE--------cCCcEEEe
Confidence 67885 555553 35555666665321 1111 1110 1123456778999999887 55667789
Q ss_pred CCCCceeeeccc
Q 040533 297 YPHMTKWGELQH 308 (364)
Q Consensus 297 ~~~~~~~~~~~~ 308 (364)
..+.+.+..+..
T Consensus 196 ~~~n~v~~~lP~ 207 (243)
T PF07250_consen 196 YKTNTVVRTLPD 207 (243)
T ss_pred CCCCeEEeeCCC
Confidence 888877666653
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.1 Score=22.93 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=19.0
Q ss_pred cccceeEEeecCCCCEEEEEe-CC--CcEEEE
Q 040533 309 QTSRILELSQSPDGLTVVSAA-AD--ETLRFW 337 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~-~d--g~i~vw 337 (364)
....-....|+|||+.|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999876654 44 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.29 E-value=13 Score=30.52 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=137.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
......++-.|||..-.++...|.|--.|..+|+....--+....-..+..-| ++..-++-+.. -|.-.|.++.+...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEE
Confidence 34457788899998888888888888889889887665555555566777777 66555443332 45555554443211
Q ss_pred ee--eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-cccceeEEEEccCCCcEEEeecCCCCC
Q 040533 167 SR--INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 167 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
.. ...-........|.+.|++-+++... .---.|-. ...+..+.. ....-+.|+..|+|+..+++- .++
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa----~~~i~vfpaPqG~gpyGi~atpdGsvwyasl---agn 210 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA----RNVISVFPAPQGGGPYGICATPDGSVWYASL---AGN 210 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccc-cceecCcc----cCceeeeccCCCCCCcceEECCCCcEEEEec---ccc
Confidence 11 11233567788899999888877532 11111111 111222222 233456788999996655543 477
Q ss_pred eEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee--ccccccceeEEee
Q 040533 244 CIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE--LQHQTSRILELSQ 318 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~ 318 (364)
.|...|..++........ +.....+--+|.|..-++..+ .+.+..||..+.. ..+ +.+....-.++..
T Consensus 211 aiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg------~g~l~rfdPs~~s-W~eypLPgs~arpys~rV 283 (353)
T COG4257 211 AIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG------TGSLHRFDPSVTS-WIEYPLPGSKARPYSMRV 283 (353)
T ss_pred ceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC------CceeeEeCccccc-ceeeeCCCCCCCcceeee
Confidence 788888877632222111 233455666677777666533 7777777765433 222 3333344456666
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeC
Q 040533 319 SPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
...++.-.+--.-|.|.-+|.++
T Consensus 284 D~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 284 DRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ccCCcEEeeccccCceeecCccc
Confidence 66665555444445565565544
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=88.13 E-value=14 Score=30.89 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=87.3
Q ss_pred CeEEEEECCCCceeeeeeecCC----CCCceEEEEcCCC-----CEEEEEe-cCCcEEEEecCCcceeeeeecC------
Q 040533 65 LELYLWKQENGEVQKLLKVTGE----DDFPTSISWSQDA-----KTLAVGY-MASKLQLWDAETSKLIRNLEGH------ 128 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~-----~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~------ 128 (364)
-.|.+||+.+++..+...++.+ ...+..+.+.... .++..+. ..+-|.|+|+.+++..+.+..+
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 3789999999998777776533 3456777776622 2333333 3357999999988765554321
Q ss_pred -------------CCcEEEEEeecC--CCCEEEEeeCCCcEEEEEcccC-----c----c----eeeeeecc-cCcEEEE
Q 040533 129 -------------DKRVATASWNHW--NGHILTSGSQDKSIINHDVRVS-----N----N----VTSRINAH-TAEVCGL 179 (364)
Q Consensus 129 -------------~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~-----~----~----~~~~~~~~-~~~v~~~ 179 (364)
...+..++.+|. +++.|.-..-.+ -.+|.+.+. . . ..+.+ +. ......+
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~ 191 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGM 191 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCceE
Confidence 112444444331 223343333221 122322211 0 0 01111 22 1355678
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc---ccceeEEEEcc--CC
Q 040533 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH---RAAVKALAWCP--YQ 230 (364)
Q Consensus 180 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~--~~ 230 (364)
+++++|.++++--..+.|..|+....-..+....+... -..+..+.+.+ ++
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g 247 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDG 247 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCc
Confidence 88999998888889999999998763322222222211 24567788877 55
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.12 E-value=16 Score=31.47 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=48.6
Q ss_pred CeEEEEECCCCceeeeeeecCC-CC---CceEEEEcCCCCEEEEEecC-----CcEEEEecCCcceee--eeec---CCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGE-DD---FPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSKLIR--NLEG---HDK 130 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~-~~---~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~--~~~~---~~~ 130 (364)
..+.+||..+.+.......... .. ....+.+ ++++++.|+.+ ..+.+||..+.+-.. .+.. ...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~ 127 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC
Confidence 3688999888776543322110 10 1112222 46677777643 257888987654332 1110 111
Q ss_pred c-EEEEEeecCCCCEEEEeeCC-----------CcEEEEEcccCc
Q 040533 131 R-VATASWNHWNGHILTSGSQD-----------KSIINHDVRVSN 163 (364)
Q Consensus 131 ~-v~~~~~~~~~~~~l~~~~~d-----------g~i~~~d~~~~~ 163 (364)
. -.+++. - ++.+++.|+.+ ..+.+||+.+..
T Consensus 128 R~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 128 RTFHSMAS-D-ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred ceeeEEEE-E-CCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 1 122222 2 66777777754 246778877554
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=88.02 E-value=3.2 Score=38.53 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=25.9
Q ss_pred ceeEEEEcc---CCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 220 AVKALAWCP---YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 220 ~v~~~~~~~---~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
....++++. ++..++++-+ .|+++++||+.+++++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~--~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLS--RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEE--TTSEEEEEETTTTCEEEEEET
T ss_pred ccceEEEecceeCCCCEEEEEe--CCCeEEEEECCCCeEEEEecc
Confidence 344555555 2334555554 899999999999999776643
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=87.58 E-value=23 Score=32.58 Aligned_cols=248 Identities=14% Similarity=0.113 Sum_probs=113.7
Q ss_pred ccEEEEEeCCeEEEEECCCCce-eeeeeecCC-CCCceEEEEcCCC-CEEEEEecCCc--EEEEecCCcceeeeeecCCC
Q 040533 56 NNILAIALGLELYLWKQENGEV-QKLLKVTGE-DDFPTSISWSQDA-KTLAVGYMASK--LQLWDAETSKLIRNLEGHDK 130 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~ 130 (364)
+.++.+..+|.++...+..... ..+..+ +. .....++++..+| .+|+.|+.-|. +.-|....-+.+..+. .-+
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~ 300 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWG 300 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcC
Confidence 4577777889888887765431 122222 22 4456777777655 47777776554 4444434445555555 457
Q ss_pred cEEEEEeecC---CCC------EEEEee---CCCcEEEEEcccCcc-eeeeeecc--cCcEEEEEEcC-CCCEEEEEeCC
Q 040533 131 RVATASWNHW---NGH------ILTSGS---QDKSIINHDVRVSNN-VTSRINAH--TAEVCGLKWSN-EGNLLASGGDD 194 (364)
Q Consensus 131 ~v~~~~~~~~---~~~------~l~~~~---~dg~i~~~d~~~~~~-~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~~d 194 (364)
+|..++..+. ... .|++++ .+|.+++..---+-. ........ -..++.+.... ++.+|+.+..+
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~ 380 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN 380 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC
Confidence 8888888531 111 444443 567887764211111 01111111 23344444332 24566666654
Q ss_pred CeEEEEeCCCCCCCcceEE-----ecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEE
Q 040533 195 NLVHVWDHSKMSSSKCLHR-----FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICG 267 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~ 267 (364)
.-+++.+........+.. +......+.+-.+. ++ .++=. ....|++.+...++........ ..|.+
T Consensus 381 -~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~-~ivQV----t~~~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 381 -ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DG-RIVQV----TPKGIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp -EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TT-EEEEE----ESSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred -ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CC-eEEEE----ecCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 445555531111111211 11112223222222 33 22222 2566999998887777665443 44555
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-----ccccceeEEeecC
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-----HQTSRILELSQSP 320 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~i~~~~ 320 (364)
.+.+.. +++.+.. ++.+..+.+.......... .....|.++..+|
T Consensus 454 a~~~~~--~v~v~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASINDP--QVLVALS------GGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEESSS--EEEEEE-------TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEECCC--EEEEEEe------CCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 555443 3333322 7888888877655543222 1356778887765
|
... |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=87.50 E-value=21 Score=32.07 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=36.8
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce--eeee----e-cCCCcEEEEEeec
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--IRNL----E-GHDKRVATASWNH 139 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~----~-~~~~~v~~~~~~~ 139 (364)
-.....|+|.|||++|++--..|.|++++..++.. +..+ . ........|+++|
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 34578999999998877765469999998655432 1111 1 1356788999998
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.79 E-value=16 Score=29.99 Aligned_cols=196 Identities=10% Similarity=0.030 Sum_probs=110.5
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcce
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 211 (364)
-..++-.| ++..-+++...+.|--.|..+++.... -.+....-..+..-|||..-++-+.. .|.-.|-++.+..+..
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~y-pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETY-PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEE-ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 34566667 787888888788888888887774322 22344445667778887755544333 4555554333221111
Q ss_pred EEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--cCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 212 HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 212 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
..............|.+.| .+..++. .|.---.|-.+ ..+..+. ....-..++..|+|..-++... +
T Consensus 141 lp~~~a~~nlet~vfD~~G-~lWFt~q---~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasla------g 209 (353)
T COG4257 141 LPLEHADANLETAVFDPWG-NLWFTGQ---IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLA------G 209 (353)
T ss_pred cccccCCCcccceeeCCCc-cEEEeec---cccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEecc------c
Confidence 1112234557788899998 5555542 22111112111 1222332 2345678888999988777543 7
Q ss_pred CeEEEeeCCCCceeee--ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 290 QKLCLWKYPHMTKWGE--LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+.|...|..++..... -......-..+--+|.|+.-++....+.+..+|...
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 7777777766522111 112123345566677888778777777777776544
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.51 E-value=14 Score=28.97 Aligned_cols=121 Identities=9% Similarity=0.037 Sum_probs=66.8
Q ss_pred eeCCCCCCCcceeecccCCCccEEEE-Ee--CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcE
Q 040533 36 ILDAPNLRNDYYSNMMDWGRNNILAI-AL--GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKL 111 (364)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i 111 (364)
++....+....+...+....+.++-. +. ...|++||+.+++......+.. ..+..=-...-|+++. -.-.+|.-
T Consensus 36 vi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egva 113 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVA 113 (262)
T ss_pred EEEeccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEecccee
Confidence 33333333344455555555544433 22 3589999999998755554431 1111111111123232 23368889
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.++|.++-+.+..+. ..+.=+.++- ++.-|+.++...++..-|.++-
T Consensus 114 f~~d~~t~~~lg~~~-y~GeGWgLt~---d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 114 FKYDADTLEELGRFS-YEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred EEEChHHhhhhcccc-cCCcceeeec---CCcceEeeCCceEEEecCHHHh
Confidence 999999888887766 3344566665 5555666555556776676543
|
|
| >PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats | Back alignment and domain information |
|---|
Probab=86.25 E-value=27 Score=32.15 Aligned_cols=181 Identities=14% Similarity=0.066 Sum_probs=97.0
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHI 144 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (364)
+.|++.| .+.+..-...--+....|.++.|--|.-+++|=-.---+.+.|+.+.+..+.+-.-+-+=.+=-.+|-+.++
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~ 382 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENH 382 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCe
Confidence 4677777 444433333222567889999998887788876554468899988765444332211111222345545555
Q ss_pred EEEeeCCC------------cEEEEEcccCcceeeeeec------c----cCcEEEEEEcCCCCEEEEEeC-------CC
Q 040533 145 LTSGSQDK------------SIINHDVRVSNNVTSRINA------H----TAEVCGLKWSNEGNLLASGGD-------DN 195 (364)
Q Consensus 145 l~~~~~dg------------~i~~~d~~~~~~~~~~~~~------~----~~~v~~~~~~~~~~~l~~~~~-------d~ 195 (364)
|+.-+.+. .|.+||+.....+...... - ...-.++.|.+..++|+.--. -.
T Consensus 383 LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~~~~~~~ 462 (521)
T PF09826_consen 383 LLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSYGYFNFQ 462 (521)
T ss_pred EEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEccCccccc
Confidence 55444321 3678998765543322111 0 112246778887776665433 13
Q ss_pred eEEEEeCCCCCCCcceEEeccccc-------ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRA-------AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
.+.++++...........+. |.. .+....+..+ .+.+. .++.|+.+|+.+.
T Consensus 463 g~~v~~i~~~~g~~~~g~i~-h~~~~~~~~~~~~R~lyi~d--~lYtv----S~~~i~~~~l~t~ 520 (521)
T PF09826_consen 463 GAYVFSIDPEDGFTLKGKIT-HPSPDYYYSYQIQRSLYIGD--TLYTV----SDNGIKAYDLNTL 520 (521)
T ss_pred eEEEEEEeCCCCeEEEEEEE-ccCcccccccceeEEEEECC--EEEEE----ECCEEEEEehHhc
Confidence 46777766322222222222 333 2555555543 34433 3788999988753
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=85.84 E-value=24 Score=31.16 Aligned_cols=145 Identities=13% Similarity=0.160 Sum_probs=80.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-
Q 040533 176 VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT- 254 (364)
Q Consensus 176 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~- 254 (364)
...+..++++.+++.+.....++-||--.. ..+.+. ......+..+.+.+++..+++ + ..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~~~--~~~~~~l~~v~~~~dg~l~l~-g---~~G~l~~-S~d~G~~ 312 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQPHN--RASARRIQNMGWRADGGLWLL-T---RGGGLYV-SKGTGLT 312 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEEec--CCCccceeeeeEcCCCCEEEE-e---CCceEEE-ecCCCCc
Confidence 344566788877776654433334542110 001111 223456889999988854444 3 3565443 344443
Q ss_pred ----EEEEEec---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc---ccccceeEEeecCCCCE
Q 040533 255 ----CIHSVDT---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ---HQTSRILELSQSPDGLT 324 (364)
Q Consensus 255 ----~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~ 324 (364)
....... ...+..+.+.+++..+++|. .|.+... ...++.....+ .-....+.+.|.++++-
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-------~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-------SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred ccccceeecccCCCCcceEEEEEcCCCcEEEEEC-------CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCce
Confidence 2222222 23488899999999888874 5555444 34444444332 22356789998777655
Q ss_pred EEEEeCCCcEEEE
Q 040533 325 VVSAAADETLRFW 337 (364)
Q Consensus 325 l~~~~~dg~i~vw 337 (364)
+++ +.+|.|.-|
T Consensus 385 ~~~-G~~G~il~~ 396 (398)
T PLN00033 385 FVL-GNDGVLLRY 396 (398)
T ss_pred EEE-eCCcEEEEe
Confidence 554 567776544
|
|
| >PF15525 DUF4652: Domain of unknown function (DUF4652) | Back alignment and domain information |
|---|
Probab=85.30 E-value=15 Score=28.16 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=45.1
Q ss_pred CeEEEEECCCCeEEEEE-ec---CCCeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 243 GCIKIWNVQKGTCIHSV-DT---KAQICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~-~~---~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
|.|++.|+.++...... .. ......+.|-.+..+ ++.|..+.+-+..|.++++++.+++.......
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeec
Confidence 77999998887765332 11 122345666665554 45566677788999999999999887665554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 364 | ||||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-83 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-83 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-83 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 7e-66 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 5e-18 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-14 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-14 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-14 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-14 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-14 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-14 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-14 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-14 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-14 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-14 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 4e-14 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-14 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-14 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-14 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 8e-14 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-13 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-13 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-12 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-08 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-11 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-11 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-11 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-10 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-10 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 9e-06 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-09 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-09 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-09 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-09 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 1e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-07 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-07 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 8e-07 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-05 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 8e-07 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 9e-07 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-06 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-06 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-06 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-06 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 6e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-05 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 3e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 8e-05 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 1e-04 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 1e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 3e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-04 |
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 367 bits (945), Expect = e-126
Identities = 125/308 (40%), Positives = 187/308 (60%), Gaps = 13/308 (4%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
R+LDAP + +DYY N++DW N++A+AL +Y+W ++G V L + T E + S+
Sbjct: 83 RVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE-TDESTYVASVK 141
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
WS D L+VG + ++D E+ +R + GH RV SWN H+L+SGS+ +I
Sbjct: 142 WSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAI 198
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF 214
+HDVR++N+ + H++EVCGL W ++G LASGG+DN+V +WD SS
Sbjct: 199 HHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR---SSIPKFTK 255
Query: 215 RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH 274
+H AAVKA+AWCP+Q N+LA+GGGT D I WN G +++VD +Q+ L W+ H
Sbjct: 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS 315
Query: 275 KEILSGHGFSSSGDGQKLCLWKYP--HMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332
KEI+S HGF D L +W Y +TK ++ +R+L + SPDG + +AA+DE
Sbjct: 316 KEIMSTHGFP---DNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371
Query: 333 TLRFWEAF 340
L+FW +
Sbjct: 372 NLKFWRVY 379
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 9e-21
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 10/171 (5%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILT--SG 148
++W D LA G + +Q+WDA +S H+ V +W W ++L G
Sbjct: 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLAS--GGDDNLVHVWDHSKMS 206
+ DK I + + + ++A + +V L WS + S G DN + +W +S
Sbjct: 281 TMDKQIHFWNAA-TGARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257
+K H V A P +L++ D +K W V G +
Sbjct: 339 LTK-QVDIPAHDTRVLYSALSPDG-RILSTAAS--DENLKFWRVYDGDHVK 385
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-36
Identities = 66/294 (22%), Positives = 120/294 (40%), Gaps = 42/294 (14%)
Query: 79 KLLKVTGEDDFPTSISWS-QDAKTLAVGYMASKLQLWD----------AETSKLIRNLEG 127
++ + + Q+A +A +S + ++D + + L G
Sbjct: 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG 179
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA------HTAEVCGLKW 181
H K SWN L S S D +I D+ + I+A HTA V + W
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239
Query: 182 S-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240
+L S DD + +WD ++SK H H A V L++ PY +LA+G
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA- 298
Query: 241 QDGCIKIWNVQKGTC-IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW--- 295
D + +W+++ +HS ++ K +I ++W+ H++ IL+ SS D + L +W
Sbjct: 299 -DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA----SSGTDRR-LHVWDLS 352
Query: 296 -----KYPHMTKWG------ELQHQTSRILELSQSPDG-LTVVSAAADETLRFW 337
+ + G T++I + S +P+ + S + D ++ W
Sbjct: 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 92 SISWSQDAKTL-AVGYMASKLQLWD---AETSKLIRNLEGHDKRVATASWNHWNGHILTS 147
++W ++L KL +WD TSK ++ H V S+N ++ IL +
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 148 GSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSK-- 204
GS DK++ D+R +H E+ ++WS + +LAS G D +HVWD SK
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 205 ---------MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254
+ L H A + +W P + ++ S +D +++W + +
Sbjct: 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS--EDNIMQVWQMAENV 412
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 3e-23
Identities = 51/245 (20%), Positives = 92/245 (37%), Gaps = 28/245 (11%)
Query: 114 WDAETSKL-IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR---------VSN 163
+ + K+ I H+ V A + N ++ + + ++ D
Sbjct: 112 FGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC 171
Query: 164 NVTSRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSS----KCLHRFRDHR 218
R+ H E GL W+ N L S DD+ + +WD + + F H
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 219 AAVKALAWCPYQFNVLASGGGTQDGCIKIWNV---QKGTCIHSVDT-KAQICGLEWNRHH 274
A V+ +AW ++ S D + IW+ H+VD A++ L +N +
Sbjct: 232 AVVEDVAWHLLHESLFGSVAD--DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 275 KEILSGHGFSSSGDGQKLCLWKYPHMT-KWGELQHQTSRILELSQSPDGLTVV-SAAADE 332
+ IL+ + S D + LW ++ K + I ++ SP T++ S+ D
Sbjct: 290 EFILA----TGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 333 TLRFW 337
L W
Sbjct: 345 RLHVW 349
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 17/152 (11%)
Query: 67 LYLW-KQENGEVQKLLKVTGEDDFPTSISWSQDAKT-LAVGYMASKLQLWDAETSKL-IR 123
L +W + N + V +S++ ++ LA G + LWD KL +
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA------------ 171
+ E H + W+ N IL S D+ + D+ S +A
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375
Query: 172 -HTAEVCGLKWS-NEGNLLASGGDDNLVHVWD 201
HTA++ W+ NE ++ S +DN++ VW
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 8e-09
Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 29/196 (14%)
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
S D+ + + +H V + P V+A+ + ++
Sbjct: 99 GSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTP--SSDVLVF 156
Query: 249 NVQKGTCIHSVDTKAQ-----------ICGLEWNRHHKEILSGHGFSSSGDGQKLCLW-- 295
+ K + Q GL WN + L S+S D +CLW
Sbjct: 157 DYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL----SASDDH-TICLWDI 211
Query: 296 -KYPHMTKWGE----LQHQTSRILELSQSPDGLTVV-SAAADETLRFWEAFGPSGSGDFV 349
P + + T+ + +++ ++ S A D+ L W+ + S
Sbjct: 212 NATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 271
Query: 350 S---HLDGLLSLKVSP 362
+ H + L +P
Sbjct: 272 TVDAHTAEVNCLSFNP 287
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 5e-35
Identities = 56/276 (20%), Positives = 94/276 (34%), Gaps = 24/276 (8%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+ + N V G I ++ D KTL S +Q+W+ +T + L+ H
Sbjct: 987 IIELPNNRVFSSG--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAH 1043
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
+ V + +L S S D ++ +V + + H V S++
Sbjct: 1044 QETVKDFRLLQ-DSRLL-SWSFDGTVKVWNVI-TGRIERDFTCHQGTVLSCAISSDATKF 1100
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
+S D +W LH + H V+ A+ +LA+G +G I+IW
Sbjct: 1101 SSTSADKTAKIWS---FDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDD--NGEIRIW 1154
Query: 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL-------CLWKYPHMT 301
NV G +HS + G H + FS D + L W
Sbjct: 1155 NVSDGQLLHSCAPISVEEGTA--THGGWVTDVC-FSP--DSKTLVSAGGYLKWWNVATGD 1209
Query: 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
+ + ++ SPD T V+ L
Sbjct: 1210 SSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 4e-34
Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 24/296 (8%)
Query: 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNH 139
L V D +SQD + +A LQ++ AET + + +++ H+ V +++
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 667
Query: 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN--LLASGGDDNLV 197
+ + + S DK + D + + + H+ +V ++N+ N LLA+G +D +
Sbjct: 668 -DDSYIATCSADKKVKIWDSA-TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257
+WD ++ +C + H +V + P +LAS DG +++W+V+
Sbjct: 726 KLWD---LNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSA--DGTLRLWDVRSANERK 779
Query: 258 SVDTK-AQICGLEWNRHHKEILSGHGFSS------SGDGQKLCLWKYPHMTKWGELQH-- 308
S++ K + + + I+ +S+ K+ L+ + G L
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF---DIHTSGLLAEIH 836
Query: 309 --QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
S I SP V A + + W D HL + + SP
Sbjct: 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-32
Identities = 57/312 (18%), Positives = 105/312 (33%), Gaps = 49/312 (15%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
L + G++ + + S + +A G +++ + +++ + GH
Sbjct: 948 LIAGKTGQI-----DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
K V + +G L S S+D I + + + V + AH V + + L
Sbjct: 1003 KKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSR-L 1058
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
S D V VW+ + + + F H+ V + A +S D KIW
Sbjct: 1059 LSWSFDGTVKVWN---VITGRIERDFTCHQGTVLSCAISS-DATKFSSTSA--DKTAKIW 1112
Query: 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL---------------- 292
+ + +H + + H + FS DG L
Sbjct: 1113 SFDLLSPLHEL------------KGHNGCVRCSAFSL--DGILLATGDDNGEIRIWNVSD 1158
Query: 293 --CLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350
L ++ + ++ SPD T+VS A L++W S F +
Sbjct: 1159 GQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVS--AGGYLKWWNVATGDSSQTFYT 1216
Query: 351 HLDGLLSLKVSP 362
+ L + VSP
Sbjct: 1217 NGTNLKKIHVSP 1228
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 7e-32
Identities = 58/312 (18%), Positives = 113/312 (36%), Gaps = 38/312 (12%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
++K E GE +K +D ++S D +A K+++WD+ T KL+ + H
Sbjct: 641 VFKAETGEKLLDIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 698
Query: 129 DKRVATASWNHWNGH--ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
++V + + + +L +GS D + D+ + + HT V ++S +
Sbjct: 699 SEQVNCCHFTN-KSNHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDE 756
Query: 187 LLASGGDDNLVHVWD----------HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
LLAS D + +WD + K D VK +W + +
Sbjct: 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA-DGDKIIV 815
Query: 237 GGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQ 290
+ ++++ + + T HH I H +
Sbjct: 816 AA---KNKVLLFDIHTSGLLAEIHT----------GHHSTIQYCDFSPYDHLAVIALSQY 862
Query: 291 KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350
+ LW K + + S + + SPDG + ++A+ D+T+R WE +
Sbjct: 863 CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET--KKVCKNSAI 920
Query: 351 HLDGLLSLKVSP 362
L + +
Sbjct: 921 VLKQEIDVVFQE 932
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 50/311 (16%), Positives = 108/311 (34%), Gaps = 43/311 (13%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W+ + + + ++ + LQL +T ++
Sbjct: 906 IRVWETKKVC----KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI---DY 958
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
+ +V+ + + + G +D +I ++ +N V S H V ++++ +G
Sbjct: 959 LPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELP-NNRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246
L S +D+++ VW+ + + H+ VK + L S DG +K
Sbjct: 1017 TLISSSEDSVIQVWN----WQTGDYVFLQAHQETVKDFRLLQD--SRLLSWSF--DGTVK 1068
Query: 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQKLCLWKYPHM 300
+WNV G + H +LS FSS+ + +W + +
Sbjct: 1069 VWNVITGRIERD-----------FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA---------FGPSGSGDFVSH 351
+ EL+ + + S DG+ + + + +R W S +H
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177
Query: 352 LDGLLSLKVSP 362
+ + SP
Sbjct: 1178 GGWVTDVCFSP 1188
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-29
Identities = 43/303 (14%), Positives = 104/303 (34%), Gaps = 27/303 (8%)
Query: 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123
E + + + SWS D + V +K+ L+D TS L+
Sbjct: 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVLLFDIHTSGLLA 833
Query: 124 N-LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182
GH + ++ H+ + ++ S + H + V G+ +S
Sbjct: 834 EIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNID-SRLKVADCRGHLSWVHGVMFS 891
Query: 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242
+G+ + DD + VW+ + K + + + ++ +
Sbjct: 892 PDGSSFLTASDDQTIRVWE-----TKKVCKNSAIVLKQEIDVVFQENE-TMVLAVDN--I 943
Query: 243 GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302
+++ + G + +AQ+ + H + + G DG + + + P+
Sbjct: 944 RGLQLIAGKTGQIDYL--PEAQVSCCCLSPHLEYVAFG-----DEDG-AIKIIELPNNRV 995
Query: 303 WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD---FVSHLDGLLSLK 359
+ + + + DG T++S++ D ++ W +GD +H + + +
Sbjct: 996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW----QTGDYVFLQAHQETVKDFR 1051
Query: 360 VSP 362
+
Sbjct: 1052 LLQ 1054
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 4e-25
Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 19/192 (9%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W G +++ S + S DA + ++W + + L+GH
Sbjct: 1069 VWNVITGRIERDFT--CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVR--------VSNNVTSRINAHTAEVCGLK 180
+ V ++++ +G +L +G + I +V +V H V +
Sbjct: 1127 NGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVC 1185
Query: 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240
+S + L S G + W+ +++ F + +K + P F +
Sbjct: 1186 FSPDSKTLVSAGGY--LKWWN---VATGDSSQTFYTNGTNLKKIHVSP-DFRTYVTVD-- 1237
Query: 241 QDGCIKIWNVQK 252
G + I V +
Sbjct: 1238 NLGILYILQVLE 1249
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 3e-22
Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 40/241 (16%)
Query: 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167
+L L + ETS++ R + A G + K+I N V
Sbjct: 563 IVQLGLCEPETSEVYRQAK------LQAKQEGDTGRLYLEWINKKTIKNLSRLV------ 610
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
+ HT V +S +G +AS G D + V+ + + L + H V A+
Sbjct: 611 -VRPHTDAVYHACFSQDGQRIASCGADKTLQVFK---AETGEKLLDIKAHEDEVLCCAFS 666
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GH 281
+ +A+ D +KIW+ G +H+ ++ H +++ +
Sbjct: 667 SDD-SYIATCS--ADKKVKIWDSATGKLVHT-----------YDEHSEQVNCCHFTNKSN 712
Query: 282 GF---SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
+ S D L LW + T+ + SPD + S +AD TLR W+
Sbjct: 713 HLLLATGSNDFF-LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 339 A 339
Sbjct: 772 V 772
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-34
Identities = 51/310 (16%), Positives = 101/310 (32%), Gaps = 32/310 (10%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET----SKLIRN 124
LW + +K + D + WS + K +A L+L+ +
Sbjct: 49 LWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR 108
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR--------VSNNVTSRINAHTAEV 176
H V T +N ++L SG + I D+ + + + EV
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168
Query: 177 CGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD------HRAAVKALAWCPY 229
L W+ + ++ AS G N +WD + + K + + + + W P
Sbjct: 169 ISLAWNQSLAHVFASAGSSNFASIWD---LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 230 QFNVLASG-GGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSS 285
+A+ G D I IW+++ + I L+W + +L SS
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL----SS 281
Query: 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV-SAAADETLRFWEAFGPSG 344
D + LW + + + + + +P+ + A+ D + +
Sbjct: 282 GRDN-TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340
Query: 345 SGDFVSHLDG 354
+ D
Sbjct: 341 TLDEQETETK 350
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 8e-30
Identities = 54/300 (18%), Positives = 109/300 (36%), Gaps = 31/300 (10%)
Query: 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH--DKRVATASWNHWNGHI 144
D P +S + A S L+LW + + + D + W+H N I
Sbjct: 23 DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH-NNKI 81
Query: 145 LTSGSQDKSIINHDV---RVSNNVTSRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVW 200
+ + S+ + + N +R + H++ V +K++ + N+LASGG++ + +W
Sbjct: 82 IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141
Query: 201 D------HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254
D + + V +LAW +V AS G IW+++
Sbjct: 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS--SNFASIWDLKAKK 199
Query: 255 CIHSVDTKAQICG-------LEWNRHHKEILSGHGFSSSGDG--QKLCLW--KYPHMTKW 303
+ + + G +EW+ + ++ +++G + +W + +
Sbjct: 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA----TATGSDNDPSILIWDLRNANTPLQ 255
Query: 304 GELQHQTSRILELSQSP-DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
Q IL L D ++S+ D T+ W F + + K +P
Sbjct: 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP 315
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-23
Identities = 42/307 (13%), Positives = 100/307 (32%), Gaps = 46/307 (14%)
Query: 67 LYLWKQENGEVQK--LLKVTGEDDFPTSISWS-QDAKTLAVGYMASKLQLWDAETSKLIR 123
L L+ + + + ++ ++ + LA G ++ +WD
Sbjct: 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150
Query: 124 ---------NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR-----VSNNVTSRI 169
V + +WN H+ S D++ + + TS
Sbjct: 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210
Query: 170 NAHTAEVCGLKWSNEGN---LLASGGD-DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225
+ ++ ++W + + A+G D D + +WD + +++ + H+ + +L
Sbjct: 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD-LRNANTPLQTLNQGHQKGILSLD 269
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQIC-GLEWNRHHKEILSGHGFS 284
WC ++L S G D + +WN + + + C ++ ++ +
Sbjct: 270 WCHQDEHLLLSSGR--DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA----C 323
Query: 285 SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344
+S D K+ + + L+ + D + + FW
Sbjct: 324 ASFDN-KIEVQ----------------TLQNLTNTLDEQETETKQQESETDFWNNVSREE 366
Query: 345 SGDFVSH 351
S + S
Sbjct: 367 SKEKPSV 373
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-09
Identities = 19/152 (12%), Positives = 40/152 (26%), Gaps = 18/152 (11%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWS-QDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127
+W N G S+ W QD L + + LW+ E+++ +
Sbjct: 244 IWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187
+ + S D I ++ L + +
Sbjct: 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ-----------------NLTNTLDEQE 346
Query: 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219
+ ++ W++ SK +A
Sbjct: 347 TETKQQESETDFWNNVSREESKEKPSVFHLQA 378
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 9e-34
Identities = 51/294 (17%), Positives = 104/294 (35%), Gaps = 59/294 (20%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+WK + + + G S+ S A + + ++LWD E K I++++
Sbjct: 62 VWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG 121
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
T +++ + L +G+ + V S ++ + + +S +G L
Sbjct: 122 PVDAWTLAFSP-DSQYLATGTHVGKVNIFGVE-SGKKEYSLDTRGKFILSIAYSPDGKYL 179
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCI 245
ASG D +++++D +++ K LH H +++L + P L + DG I
Sbjct: 180 ASGAIDGIINIFD---IATGKLLHTLEGHAMPIRSLTFSPDSQL----LVTASD--DGYI 230
Query: 246 KIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------FSSSGDGQKL------ 292
KI++VQ + LSGH F D
Sbjct: 231 KIYDVQHANLAGT-------------------LSGHASWVLNVAFCP--DDTHFVSSSSD 269
Query: 293 ---CLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+W H ++ + + +G +VS D+ + ++
Sbjct: 270 KSVKVWD----VGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-27
Identities = 46/256 (17%), Positives = 85/256 (33%), Gaps = 65/256 (25%)
Query: 113 LWDAETSKLIRNLEGHDKRVATASW---NHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169
+ L + + HD + + +W N + +GS D + +V R+
Sbjct: 16 QGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLV-----KVWKWRDERL 70
Query: 170 NA------HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223
+ H V + S+ + AS D + +WD + + K +
Sbjct: 71 DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD---LENGKQIKSIDAGPVDAWT 127
Query: 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG- 282
LA+ P LA+G G + I+ V+ G + L G
Sbjct: 128 LAFSPDS-QYLATGTH--VGKVNIFGVESGKKEY-------------------SLDTRGK 165
Query: 283 ------FSSSGDGQKL---------CLWKYPHMTKWGELQHQ----TSRILELSQSPDGL 323
+S DG+ L ++ G+L H I L+ SPD
Sbjct: 166 FILSIAYSP--DGKYLASGAIDGIINIFD----IATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 324 TVVSAAADETLRFWEA 339
+V+A+ D ++ ++
Sbjct: 220 LLVTASDDGYIKIYDV 235
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 10/183 (5%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
++ E+G+ + L F SI++S D K LA G + + ++D T KL+ LEGH
Sbjct: 148 IFGVESGKKEYSLD--TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
+ + +++ + +L + S D I +DV+ N+ ++ H + V + + +
Sbjct: 206 AMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQ-HANLAGTLSGHASWVLNVAFCPDDTHF 263
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
S D V VWD + + C+H F DH+ V + + + + S G D I I+
Sbjct: 264 VSSSSDKSVKVWD---VGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVG--DDQEIHIY 317
Query: 249 NVQ 251
+
Sbjct: 318 DCP 320
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 6e-12
Identities = 25/198 (12%), Positives = 47/198 (23%), Gaps = 51/198 (25%)
Query: 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGC 244
+NL + + H A+ ++AW + +G D
Sbjct: 5 HHHSSRENLYFQGT---NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSL--DDL 59
Query: 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------FSSSGDGQKL----- 292
+K+W + + L GH S
Sbjct: 60 VKVWKWRDERLD-----------------LQWSLEGHQLGVVSVDISH--TLPIAASSSL 100
Query: 293 ----CLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344
LW + G+ L+ SPD + + + +
Sbjct: 101 DAHIRLWD----LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156
Query: 345 SGDFVSHLDGLLSLKVSP 362
+ +LS+ SP
Sbjct: 157 EYSLDTRGKFILSIAYSP 174
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-32
Identities = 55/309 (17%), Positives = 102/309 (33%), Gaps = 37/309 (11%)
Query: 70 WKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129
Q + ++ LK G + + W +D + + K+ +WD+ T+ +
Sbjct: 49 LGQFVMKTRRTLK--GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC 106
Query: 130 KRVATASWNHWNGHILTSGSQDKSI-----INHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
V ++ +G + G D + HT + ++N
Sbjct: 107 TWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQDG 243
+ + D +WD + S + L F H A V L P N SGG D
Sbjct: 166 DMQILTASGDGTCALWD---VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC--DK 220
Query: 244 CIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQKLCLW-- 295
+W+++ G C+ + H ++ S G F+S D L+
Sbjct: 221 KAMVWDMRSGQCVQA------FET-----HESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Query: 296 KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS--GDFVSHLD 353
+ + + S G + + D T+ W+ GS H +
Sbjct: 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV--LKGSRVSILFGHEN 327
Query: 354 GLLSLKVSP 362
+ +L+VSP
Sbjct: 328 RVSTLRVSP 336
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-28
Identities = 53/292 (18%), Positives = 90/292 (30%), Gaps = 65/292 (22%)
Query: 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--------------SKLIRNLEGHDK 130
G + T S +A++L + +L D E K R L+GH
Sbjct: 6 GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGN 65
Query: 131 RVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLAS 190
+V W + + S SQD +I D + N + V ++ G +A
Sbjct: 66 KVLCMDWCK-DKRRIVSSSQDGKVIVWDSF-TTNKEHAVTMPCTWVMACAYAPSGCAIAC 123
Query: 191 GGDDNLVHVWD---HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247
GG DN V+ + + H + A ++ + + G DG +
Sbjct: 124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASG--DGTCAL 180
Query: 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------FSSSGDGQKL-------- 292
W+V+ G + S GHG + S G
Sbjct: 181 WDVESGQLLQS-------------------FHGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 293 -CLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+W + G+ S + + P G S + D T R ++
Sbjct: 222 AMVWD----MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 52/276 (18%), Positives = 95/276 (34%), Gaps = 61/276 (22%)
Query: 69 LW----KQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124
++ + K V ++ ++ S++ + LWD E+ +L+++
Sbjct: 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS 191
Query: 125 LEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183
GH V G+ SG DK + D+R S H ++V +++
Sbjct: 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAFETHESDVNSVRYYP 250
Query: 184 EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH--RAAVKALAWCPYQFNVLASGGGTQ 241
G+ ASG DD ++D + + + + + ++ + +L +G
Sbjct: 251 SGDAFASGSDDATCRLYD---LRADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYN-- 304
Query: 242 DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301
D I +W+V KG+ + IL GH
Sbjct: 305 DYTINVWDVLKGSRVS-------------------ILFGH-------------------- 325
Query: 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
+R+ L SPDG S + D TLR W
Sbjct: 326 --------ENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 5e-32
Identities = 48/292 (16%), Positives = 94/292 (32%), Gaps = 48/292 (16%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
I + + + ++++W+ ET +R+++ + V + + + GS
Sbjct: 17 KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSD 75
Query: 151 DKSIINHDVRVSNNVTSR----INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206
D I RV N T AH + + + SG DD V +W+ +
Sbjct: 76 DFRI-----RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE--N 128
Query: 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQIC 266
+ F H V +A+ P + ASG D +K+W++ + T
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNF--------- 177
Query: 267 GLEWNRHHKEILSGHG-------FSSSGDGQKL---------CLWKYPHMTKWGELQHQT 310
+ +G + D + +W Y + L+
Sbjct: 178 ---------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 311 SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
S + P ++S + D TL+ W + L+ + P
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 55/332 (16%), Positives = 102/332 (30%), Gaps = 54/332 (16%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEG 127
++ GE + D+ SI+ + G ++LW+ E L + EG
Sbjct: 81 VFNYNTGEKVVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE--G 185
H+ V ++N + SG D+++ + S + V + +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
+ + DD + +WD + C+ H + V + P ++ SG +DG +
Sbjct: 199 PYMITASDDLTIKIWD---YQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGS--EDGTL 252
Query: 246 KIWNVQKGTCIHS--------------------------------VDTKAQICGLEWNRH 273
KIWN + + L +
Sbjct: 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPV 312
Query: 274 HKEILSGHG-------FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326
K + SG F++ G + P + EL L+ SP+G V
Sbjct: 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVT 372
Query: 327 SAAADETLRFWEAFGPSGSG----DFVSHLDG 354
E + + + + DFV D
Sbjct: 373 VVGDGEYVIYTALAWRNKAFGKCQDFVWGPDS 404
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 41/291 (14%), Positives = 76/291 (26%), Gaps = 43/291 (14%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKT--LAVGYMASKLQLWDAETSKLIRNLE 126
+W +V+K L + I+ + +A G+ + + + +L+
Sbjct: 254 IWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLD 310
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI-----NAHTAEVCGLKW 181
K V + + S I + V + + + L
Sbjct: 311 PVGKLVWSG-----GKNAAASDIFTAVI-RGNEEVEQDEPLSLQTKELGSVDVFPQSLAH 364
Query: 182 SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241
S G + GD V L + W P N A
Sbjct: 365 SPNGRFVTVVGDGEYVIYT---------ALAWRNKAFGKCQDFVWGPDS-NSYALIDE-- 412
Query: 242 DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301
G IK + K SV + I + SG DG + + + + T
Sbjct: 413 TGQIKYYKNFKEVTSWSVPMHSAI---------DRLFSGALLGVKSDG-FVYFFDWDNGT 462
Query: 302 KWGELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH 351
+ + I S +G V+ + + + D
Sbjct: 463 LVRRIDVNAKDVIW----SDNGELVMIVNTNSNGDEASGYTLLFNKDAYLE 509
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 7e-31
Identities = 52/300 (17%), Positives = 104/300 (34%), Gaps = 57/300 (19%)
Query: 69 LWKQENGEVQ--KLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125
WK + + ++ G + + D L+LWD T + +
Sbjct: 44 SWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR----INAHTAEVCGLKW 181
GH V + + ++ SGS+DK+I +V + + + H V ++
Sbjct: 104 VGHKSDVMSVDIDK-KASMIISGSRDKTI-----KVW-TIKGQCLATLLGHNDWVSQVRV 156
Query: 182 S------NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
++ + S G+D +V W+ ++ + F H + + L P ++A
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWN---LNQFQIEADFIGHNSNINTLTASP-DGTLIA 212
Query: 236 SGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLC-- 293
S G +DG I +WN+ ++++ E+ S FS + L
Sbjct: 213 SAG--KDGEIMLWNLAAKKAMYTLS------------AQDEVFSL-AFSP--NRYWLAAA 255
Query: 294 ------LW--------KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
++ G + + L+ S DG T+ + D +R W+
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 1e-22
Identities = 49/251 (19%), Positives = 89/251 (35%), Gaps = 58/251 (23%)
Query: 117 ETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT----SRINAH 172
E L LEGH+ V + + + ++L S S+DK++I+ + + H
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 173 TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232
+ V + +G S D + +WD +++ + RF H++ V ++ + +
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDK-KAS 120
Query: 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------FS- 284
++ SG D IK+W + KG C+ L GH
Sbjct: 121 MIISGSR--DKTIKVWTI-KGQCLA-------------------TLLGHNDWVSQVRVVP 158
Query: 285 ---SSGDGQKL---------CLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSA 328
+ D + W +++ S I L+ SPDG + SA
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWN----LNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 329 AADETLRFWEA 339
D + W
Sbjct: 215 GKDGEIMLWNL 225
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 30/195 (15%), Positives = 53/195 (27%), Gaps = 56/195 (28%)
Query: 172 HTAEVCGLKWS-NEGNLLASGGDDNLVHVWD--HSKMSSSKCLHRFRDHRAAVKALAWCP 228
H V L S + NLL S D + W + F+ H V+
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 229 Y-QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287
+ S D +++W+V G GH
Sbjct: 76 DGAY--ALSASW--DKTLRLWDVATGETYQ-------------------RFVGH------ 106
Query: 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD 347
S ++ + ++S + D+T++ W G
Sbjct: 107 ----------------------KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL-AT 143
Query: 348 FVSHLDGLLSLKVSP 362
+ H D + ++V P
Sbjct: 144 LLGHNDWVSQVRVVP 158
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 4e-13
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 24/171 (14%)
Query: 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKS 153
D+ T+ ++ W+ ++ + GH+ + T + + +G ++ S +D
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGE 219
Query: 154 IINHDVRVSNNVTSRINA---HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
I + N + EV L +S LA+ + V+ +
Sbjct: 220 I-----MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFS---LDPQYL 270
Query: 211 LHRFRD--------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253
+ R +LAW L +G D I++W V
Sbjct: 271 VDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYT--DNVIRVWQVMTA 318
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 2e-23
Identities = 10/278 (3%), Positives = 37/278 (13%), Gaps = 45/278 (16%)
Query: 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167
+ + + ++ + +
Sbjct: 4 EGGAAARALSQREQDIQMMLAADVHLGTKNCD-FQMER-YVYKRRTDGIYIIN-LGKTWE 60
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
++ + ++ + + ++ + + H
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKF---AQYTGAHAIAGRHTPGTFTNQLQ 117
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG----- 282
F+ K + L +
Sbjct: 118 T-SFSEPRLLIL--TDPRTDHQPIKESA------------LGNIPTIAFCDTDSPMRYVD 162
Query: 283 --FS---------SSGDGQKLCLW-----KYPHMTKWGELQHQTSRILELS-QSPDGLTV 325
L ++ +
Sbjct: 163 IGIPANNKGKQSIGCLF-WLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEE 221
Query: 326 VSAAADETLRFWEAFGPSGSGD-FVSHLDGLLSLKVSP 362
+ A + E P+ D P
Sbjct: 222 AALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIP 259
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-30
Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 33/261 (12%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
+S+ +S + + LA +++W A K + + GH ++ +W+ + ++L S S
Sbjct: 27 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASD 85
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DK++ DV S + H+ V ++ + NL+ SG D V +WD + + KC
Sbjct: 86 DKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VKTGKC 141
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270
L H V A+ + +++ S DG +IW+ G C+
Sbjct: 142 LKTLPAHSDPVSAVHFNR-DGSLIVSSSY--DGLCRIWDTASGQCLK-----------TL 187
Query: 271 NRHHKEILSGHGFSSSGDGQKL---------CLWKYPHMTKWGELQHQTSRILELSQS-- 319
+S FS +G+ + LW Y + + +
Sbjct: 188 IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245
Query: 320 -PDGLTVVSAAADETLRFWEA 339
G +VS + D + W
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNL 266
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 3e-27
Identities = 52/275 (18%), Positives = 98/275 (35%), Gaps = 59/275 (21%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W +G+ K LK G ++ +++ + + G +++WD +T K ++ L H
Sbjct: 91 IWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
V+ +N +G ++ S S D D + + I+ V +K+S G +
Sbjct: 149 SDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN--VLASGGGTQDGCIK 246
+ DN + +WD S KCL + H+ + + SG D +
Sbjct: 208 LAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE--DNLVY 262
Query: 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306
IWN+Q + L GH
Sbjct: 263 IWNLQTKEIVQ-------------------KLQGH------------------------- 278
Query: 307 QHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
T ++ + P + SAA D+T++ W++
Sbjct: 279 ---TDVVISTACHPTENIIASAALENDKTIKLWKS 310
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 9e-25
Identities = 59/248 (23%), Positives = 95/248 (38%), Gaps = 62/248 (25%)
Query: 117 ETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA----H 172
L L GH K V++ ++ NG L S S DK I ++ + H
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLI-----KIWGAYDGKFEKTISGH 64
Query: 173 TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232
+ + WS++ NLL S DD + +WD +SS KCL + H V + P Q N
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSN 120
Query: 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------FSS 285
++ SG D ++IW+V+ G C+ L H F+
Sbjct: 121 LIVSGSF--DESVRIWDVKTGKCLK-------------------TLPAHSDPVSAVHFNR 159
Query: 286 SGDGQKLC---------LWKYPHMTKWGE-----LQHQTSRILELSQSPDGLTVVSAAAD 331
DG + +W T G+ + + + SP+G +++A D
Sbjct: 160 --DGSLIVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 332 ETLRFWEA 339
TL+ W+
Sbjct: 214 NTLKLWDY 221
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 2e-18
Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 58/193 (30%)
Query: 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206
+ S+ V+ + + + HT V +K+S G LAS D L+ +W
Sbjct: 2 TQSKPTP-----VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG---AY 53
Query: 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQIC 266
K H+ + +AW N+L S D +KIW+V G C+
Sbjct: 54 DGKFEKTISGHKLGISDVAWSS-DSNLLVSASD--DKTLKIWDVSSGKCLK--------- 101
Query: 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326
L GH ++ + + +P +V
Sbjct: 102 ----------TLKGH----------------------------SNYVFCCNFNPQSNLIV 123
Query: 327 SAAADETLRFWEA 339
S + DE++R W+
Sbjct: 124 SGSFDESVRIWDV 136
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 4e-30
Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 44/293 (15%)
Query: 69 LWKQENGEVQ--KLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125
+WK E + G F + + S D + G L+LWD T R
Sbjct: 65 MWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF 124
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185
GH K V + +++ + + SGS+DK+I + T + +H+ V +++S
Sbjct: 125 VGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 186 --NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGT 240
++ S G D LV VW+ +++ K H + + P ASGG
Sbjct: 184 SNPIIVSCGWDKLVKVWN---LANCKLKTNHIGHTGYLNTVTVSPDGSL----CASGGK- 235
Query: 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDG----- 289
DG +W++ +G ++++D I + + ++
Sbjct: 236 -DGQAMLWDLNEGKHLYTLD------------GGDIINALCFSPNRYWLCAATGPSIKIW 282
Query: 290 ---QKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
K+ + + + + + L+ S DG T+ + D +R W+
Sbjct: 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 5e-22
Identities = 48/260 (18%), Positives = 84/260 (32%), Gaps = 34/260 (13%)
Query: 97 QDAKTLAVGYMASKLQLWDA----ETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152
+ G L+ E L L+GH+ V + ++ S S+DK
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDK 61
Query: 153 SII----NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
+II D + H+ V + S++G SG D + +WD +++
Sbjct: 62 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD---LTTG 118
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL 268
RF H V ++A+ + SG D IK+WN +
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDN-RQIVSGSR--DKTIKLWNTLGV----------CKYTV 165
Query: 269 EWNRHHKEILS------GHGF---SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319
+ H + + S D + + +W + T + ++ S
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWD-KLVKVWNLANCKLKTNHIGHTGYLNTVTVS 224
Query: 320 PDGLTVVSAAADETLRFWEA 339
PDG S D W+
Sbjct: 225 PDGSLCASGGKDGQAMLWDL 244
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 1e-13
Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 22/197 (11%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-----KLQLWDAETSKLIR 123
LW + ++ ++ + + +S ++ + S +++W+ KL
Sbjct: 154 LWNTLGVC-KYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKT 209
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183
N GH + T + + +G + SG +D + D+ ++ + L +S
Sbjct: 210 NHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLN-EGKHLYTLDGGDI-INALCFSP 266
Query: 184 EGNLLASGGDDNLVHVWD------HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237
L + + + +WD ++ + +LAW L +G
Sbjct: 267 NRYWLCAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAG 324
Query: 238 GGTQDGCIKIWNVQKGT 254
D +++W V GT
Sbjct: 325 YT--DNLVRVWQVTIGT 339
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 6e-30
Identities = 56/300 (18%), Positives = 103/300 (34%), Gaps = 55/300 (18%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKT---LAVGYMASKLQLWDAETSKLIRNL 125
+W + + ++ S S + +AVG K+QL D ++ L
Sbjct: 126 VWDTNTLQTADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSI---------------INHDVRVSNNVTSRIN 170
+GH + + SW+ +IL + S D + H+ + S V S
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242
Query: 171 AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL-----HRFRDHRAAVKALA 225
AH +V GL ++++G L + G DN + +W+ S+ + + + +K
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN---SSNGENTLVNYGKVCNNSKKGLKFTV 299
Query: 226 WCPY-QFNVLASGGGTQDGCIKIWNVQKGTCI-----HSVDTKAQICGLEWNRHHKEILS 279
C V G T I ++ V G I H + + + +E+ S
Sbjct: 300 SCGCSSEFVFVPYGST----IAVYTVYSGEQITMLKGHY----KTVDCCVFQSNFQELYS 351
Query: 280 GHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILELSQSPDGLTVVSAAADE-TLRFW 337
G S D + W E + + +P S++ +E W
Sbjct: 352 G-----SRDCN-ILAWV----PSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAW 401
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 42/288 (14%), Positives = 92/288 (31%), Gaps = 61/288 (21%)
Query: 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTS 147
+ T ++ E +K H + T G + S
Sbjct: 12 LEDPLRLRRAE-STR---------RVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLS 61
Query: 148 GSQDKSI------------INHDVRVSNNVTSRINAHTAEVCGLKWS-NEGNLLASGGDD 194
G D I V + + H V ++W ++ + S D
Sbjct: 62 GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121
Query: 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY--QFNVLASGGGTQDGCIKIWNVQK 252
+ VWD ++ + + V + P + ++A GT+ +++ +++
Sbjct: 122 KTLKVWD---TNTLQTAD-VFNFEETVYSHHMSPVSTKHCLVAV--GTRGPKVQLCDLKS 175
Query: 253 GTCI-----HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW-----KYPHMTK 302
G+C H +I + W+ + IL+ ++S D ++ LW +T
Sbjct: 176 GSCSHILQGHR----QEILAVSWSPRYDYILA----TASADS-RVKLWDVRRASGCLITL 226
Query: 303 WGELQHQTSRILELSQ-----------SPDGLTVVSAAADETLRFWEA 339
++ + + + DGL +++ D +R W +
Sbjct: 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 23/171 (13%), Positives = 47/171 (27%), Gaps = 13/171 (7%)
Query: 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWN-- 141
T + + ++ D L ++++LW++ + G +
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301
Query: 142 --GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199
+I + V S + + H V + + L SG D +
Sbjct: 302 GCSSEFVFVPYGSTIAVYTVY-SGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250
W S + + D P F S ++G W+
Sbjct: 361 WV---PSLYEPV---PDDDETTTKSQLNP-AFEDAWSSSD-EEGGTSAWSH 403
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 7e-30
Identities = 40/283 (14%), Positives = 88/283 (31%), Gaps = 51/283 (18%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSG 148
+ +W++D +A+ ++ +++ +K + L+ H+ +V W + + + +
Sbjct: 12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTC 70
Query: 149 SQDKSIINHDVRV------SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD- 201
D++ V + T I ++W+ A G ++ +
Sbjct: 71 GTDRNA-----YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125
Query: 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFN--VLASGGGTQDGCIKIWNVQKGTCIHSV 259
+ C H + R+ V +L W P N +LA+G D +I++
Sbjct: 126 EQENDWWVCKHIKKPIRSTVLSLDWHP---NSVLLAAGSC--DFKCRIFSAYIKEVEERP 180
Query: 260 DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319
S G+ + E + + S
Sbjct: 181 A------------------PTPWGSKMPFGELM-----------FESSSSCGWVHGVCFS 211
Query: 320 PDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
+G V + D T+ +A S LL++
Sbjct: 212 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 254
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-28
Identities = 37/297 (12%), Positives = 87/297 (29%), Gaps = 39/297 (13%)
Query: 68 YLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK----LIR 123
Y+W + + L + + + W+ + K AVG + + + E
Sbjct: 77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 136
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSI-----------------INHDVRVSNNVT 166
+ V + W+ N +L +GS D +
Sbjct: 137 IKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM 195
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226
++ V G+ +S G+ +A D+ V + D + + A+ +
Sbjct: 196 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD---ADKKMAVATLASETLPLLAVTF 252
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286
+ +++A+G D ++ S + + + L+ +
Sbjct: 253 IT-ESSLVAAGH---DCFPVLFTYDSAAGKLSFGGRLD----VPKQSSQRGLTARERFQN 304
Query: 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG----LTVVSAAADETLRFWEA 339
D + L H+ + + ++S G + D + W+
Sbjct: 305 LDKKASSEGSAAAGAGLDSL-HK-NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 5e-14
Identities = 22/187 (11%), Positives = 53/187 (28%), Gaps = 14/187 (7%)
Query: 70 WKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129
K GE+ + + + +S + +A S + L DA+ + L
Sbjct: 187 SKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244
Query: 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189
+ ++ ++ +G ++ + S
Sbjct: 245 LPLLAVTFIT-ESSLVAAGHDCFPVL-FTYDSAAGKLS-FGGRLDVPKQSSQRGLTARER 301
Query: 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCIK 246
D + + L H+ +V ++ + + + G DG +
Sbjct: 302 FQNLDKKASSEGSAA--AGAGLDSL--HKNSVSQISVLSGGKAKCSQFCTTG--MDGGMS 355
Query: 247 IWNVQKG 253
IW+V+
Sbjct: 356 IWDVRSL 362
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 47/315 (14%), Positives = 106/315 (33%), Gaps = 45/315 (14%)
Query: 69 LWKQENGEVQKLLKVTGEDDFP------TSISWSQDAKTLAV--GYMASKLQLWDAETSK 120
+W + ++V + +F + ISW + + L V + ++
Sbjct: 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN 151
Query: 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCG 178
+ + GH +R+ + D S++ + S + + V
Sbjct: 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211
Query: 179 LKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN--VLA 235
+++S + G + + G D + +D S + L D + V+ + + A
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFD---GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 236 SGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ----- 290
+ G D I++W+V C+ ++ G ++G+G+
Sbjct: 269 TVGA--DATIRVWDVTTSKCVQK---------WTLDKQQLGNQQ-VGVVATGNGRIISLS 316
Query: 291 ---KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD 347
L ++ H + I L+ +P ++S + D + W + S
Sbjct: 317 LDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSS-----SSM 367
Query: 348 FVSHLDGLLSLKVSP 362
H + ++SL S
Sbjct: 368 HQDHSNLIVSLDNSK 382
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 49/326 (15%), Positives = 106/326 (32%), Gaps = 51/326 (15%)
Query: 69 LWKQENGEVQKLLKVTGEDDFP-TSISWS--QDAKTLAVGYMASKLQLWDAETSKLIRNL 125
+ +V +++ TG T++ +S + ++ L G + K+ +W K ++
Sbjct: 45 CLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV 104
Query: 126 EGHDK--------RVATASWNHWNGHILT-SGSQDKSIINHDVRV----SNNVTSRINAH 172
E + K ++ SW+ + +D S N ++ H
Sbjct: 105 EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFG-----VFISWDSGNSLGEVSGH 159
Query: 173 TAEVCGLKWSNEGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231
+ + + GDD V + S + V+ + + P
Sbjct: 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG 219
Query: 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFS-SSGDGQ 290
+ + G D I ++ + G + + + G F+ S D Q
Sbjct: 220 EFVITVGS--DRKISCFDGKSGEFLK-----------YIEDDQEPVQGG-IFALSWLDSQ 265
Query: 291 KL---------CLW----KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
K +W + Q ++ + + + +G ++S + D TL F+
Sbjct: 266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFY 324
Query: 338 EAFGPSGSGDFVSHLDGLLSLKVSPI 363
E H G+ +L V+P+
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNPL 350
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 45/280 (16%), Positives = 79/280 (28%), Gaps = 37/280 (13%)
Query: 84 TGEDDFPTSISWSQDAKTLAVGYMASK-LQLWDAETSK--LIRNLEGH-DKRVATASWN- 138
+ + +F T +S+ +A S ++ D SK + GH V T ++
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 74
Query: 139 HWNGHILTSGSQDKSII-------NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL--A 189
L SG + +I V NV S + + W EG L
Sbjct: 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134
Query: 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
G DN S L H + A + + G DG + +
Sbjct: 135 GEGRDNFGVFIS---WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG--DDGSVVFYQ 189
Query: 250 VQKGTCIHSVDTKAQICGLEWNRHHKEILS-------GHGFSSSGDGQKLCLWKYPHMTK 302
S T ++ + G + G +K+ +
Sbjct: 190 GPPFKFSASDRT--------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 241
Query: 303 WGELQHQTSRILELSQSP---DGLTVVSAAADETLRFWEA 339
++ + + D + AD T+R W+
Sbjct: 242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 20/194 (10%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
L + + G++ K ++ S+S + A L G +L D E S +
Sbjct: 429 LLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL--KT 485
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS---- 182
+ + S + + + +G I+ +D++ TSR T+++ + W
Sbjct: 486 PLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544
Query: 183 ------NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
E +L+A+G D + ++ K + H+ V L W + L S
Sbjct: 545 GANEEEIEEDLVATGSLDTNIFIYSVK--RPMKIIKALNAHKDGVNNLLWETP--STLVS 600
Query: 237 GGGTQDGCIKIWNV 250
G D CIK WNV
Sbjct: 601 SG--ADACIKRWNV 612
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 37/260 (14%), Positives = 82/260 (31%), Gaps = 70/260 (26%)
Query: 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGS 149
P S + D T + L + + T +I+++ + A + ++ L G+
Sbjct: 409 PKVASANNDGFTAVLTND-DDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467
Query: 150 QDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207
+ ++S+ S A+ + S +A+G + ++D + S
Sbjct: 468 TIQVF-----KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD---LQS 519
Query: 208 SKCLH-RFRDHRAAVKALAWCPYQFNV---------LASGGGTQDGCIKIWNVQKGTCIH 257
+ R+ + + A++W P + +A+G D I I++V++
Sbjct: 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL--DTNIFIYSVKRP---- 573
Query: 258 SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317
+ L+ H + L
Sbjct: 574 --------------MKIIKALNAH----------------------------KDGVNNLL 591
Query: 318 QSPDGLTVVSAAADETLRFW 337
T+VS+ AD ++ W
Sbjct: 592 WETPS-TLVSSGADACIKRW 610
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 39/279 (13%), Positives = 93/279 (33%), Gaps = 42/279 (15%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWS---QDAKTLAVGYMASKLQLWDAETSKLIRNL 125
+ ++GE K ++ + + ++ D++ A + +++WD TSK ++
Sbjct: 233 CFDGKSGEFLKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 290
Query: 126 EGHDKRVA----TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW 181
+++ NG I+ S S D ++ +++ + V I+ H + L
Sbjct: 291 TLDKQQLGNQQVGVVATG-NGRII-SLSLDGTLNFYELG-HDEVLKTISGHNKGITALTV 347
Query: 182 SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241
+ L SG D + W S M +DH + +L Q +S
Sbjct: 348 NP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ--EYSSISW-- 391
Query: 242 DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301
D +K+ + K + + + + L + +
Sbjct: 392 DDTLKVNGITKHEFGSQPKVAS-------------ANNDGFTAVLTNDDDLLILQSFTGD 438
Query: 302 KWGELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
++ + + LSQ+ + + + + +
Sbjct: 439 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 477
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 3e-21
Identities = 34/305 (11%), Positives = 81/305 (26%), Gaps = 52/305 (17%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSIS-WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127
+W + + + + + + + + L ++ ++++ + G
Sbjct: 278 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISG 337
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187
H+K + + N L SGS D I+ +S H+ + L S
Sbjct: 338 HNKGITALTVNP-----LISGSYDGRIMEWSS------SSMHQDHSNLIVSLDNSK-AQE 385
Query: 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247
+S D+ + V +K + + K + A D + I
Sbjct: 386 YSSISWDDTLKVNGITK----------HEFGSQPKVASANN--DGFTAVLTN--DDDLLI 431
Query: 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL---------CLWKYP 298
G I + S S + L L
Sbjct: 432 LQSFTGDIIK-----------SVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLE 478
Query: 299 HMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF-GPSGSGDFVSHLDGLLS 357
+ ++ +S SP + + + ++ + + + +
Sbjct: 479 --VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA 536
Query: 358 LKVSP 362
+ P
Sbjct: 537 ISWKP 541
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 42/207 (20%)
Query: 171 AHTAEVCGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHR-AAVKALAWCP 228
L + N +A G V D S + +F H + V + + P
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQFTGHGSSVVTTVKFSP 74
Query: 229 YQF-NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG----- 282
+ L SG + G + +W +SV+ + K
Sbjct: 75 IKGSQYLCSGD--ESGKVIVWGWTFDKESNSVEV-----------NVKSEFQVLAGPISD 121
Query: 283 --FSSSGDGQKLC-----------LWKYPHMTKWGELQHQTSRILELSQSPDG-LTVVSA 328
+ +G++LC + GE+ + RI + ++
Sbjct: 122 ISW--DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 179
Query: 329 AADETLRFWEAFGPSGSGDFVSHLDGL 355
D ++ F++ F +
Sbjct: 180 GDDGSVVFYQG----PPFKFSASDRTH 202
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-29
Identities = 54/279 (19%), Positives = 97/279 (34%), Gaps = 47/279 (16%)
Query: 69 LWKQENGE-VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--SKLIRNL 125
+W E + K + G ++WS LA + +W + + L
Sbjct: 42 IWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL 101
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSII--NHDVRVSNNVTSRINAHTAEVCGLKWSN 183
EGH+ V + +W +G++L + S+DKS+ D S +N+HT +V + W
Sbjct: 102 EGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 184 EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGT 240
LLAS D+ V ++ + C H + V +LA+ P LAS
Sbjct: 161 SQELLASASYDDTVKLYR-EEEDDWVCCATLEGHESTVWSLAFDPSGQR----LASCSD- 214
Query: 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300
D ++IW V S + +C H
Sbjct: 215 -DRTVRIWRQYLPGNEQGVACSG---------------------SDPSWKCICTLSGFH- 251
Query: 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ I +++ + +A D+ +R ++
Sbjct: 252 ---------SRTIYDIAWCQLTGALATACGDDAIRVFQE 281
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 9e-28
Identities = 55/269 (20%), Positives = 90/269 (33%), Gaps = 63/269 (23%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN---LEGHDKRVATASWNHWNGHILTS 147
++W+ LA ++++W E I EGH + V +W+ G+ L S
Sbjct: 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLAS 78
Query: 148 GSQDKSIINHDVRVSNNVTSR------INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201
S D + + + H EV + W+ GNLLA+ D V VW+
Sbjct: 79 ASFDATT-----CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261
+ +C+ H VK + W P Q +LAS D +K++ ++
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASY--DDTVKLYREEEDD------- 183
Query: 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321
+C L GH S + L+ P
Sbjct: 184 --WVCC--------ATLEGH----------------------------ESTVWSLAFDPS 205
Query: 322 GLTVVSAAADETLRFWEAFGPSGSGDFVS 350
G + S + D T+R W + P
Sbjct: 206 GQRLASCSDDRTVRIWRQYLPGNEQGVAC 234
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 39/213 (18%), Positives = 80/213 (37%), Gaps = 27/213 (12%)
Query: 69 LWKQENGEVQKLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNL 125
+W+ + + + + V + W + LA ++L+ E L
Sbjct: 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL 190
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSI-------INHDVRVSNNVTSRI--------N 170
EGH+ V + +++ +G L S S D+++ ++ V+ + +
Sbjct: 191 EGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 171 AHTAEVCGLKWSNEGNLLASGGDDNLVHVWD------HSKMSSSKCLHRFRDHRAAVKAL 224
H+ + + W LA+ D+ + V+ + + S H + H V +
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257
AW P + +LAS DG + W Q+ +H
Sbjct: 310 AWNPKEPGLLASCS--DDGEVAFWKYQRPEGLH 340
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 3e-23
Identities = 47/292 (16%), Positives = 96/292 (32%), Gaps = 66/292 (22%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK---LQLWDAET---SKLI 122
+WK+ + + + + G ++ S++W+ LA S+ + +W+ + + +
Sbjct: 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC---SRDKSVWVWEVDEEDEYECV 143
Query: 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR-INAHTAEVCGLKW 181
L H + V W+ + +L S S D ++ + + V + H + V L +
Sbjct: 144 SVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 182 SNEGNLLASGGDDNLVHVWD------------HSKMSSSKCLHRFR-DHRAAVKALAWCP 228
G LAS DD V +W S KC+ H + +AWC
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGD 288
LA+ G D I+++ + + H
Sbjct: 263 -LTGALATACG--DDAIRVFQEDPNSDPQQPTFSLTA----------HLHQAH------- 302
Query: 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSP-DGLTVVSAAADETLRFWEA 339
+ + ++ +P + + S + D + FW+
Sbjct: 303 ---------------------SQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 8e-29
Identities = 58/296 (19%), Positives = 103/296 (34%), Gaps = 32/296 (10%)
Query: 69 LWKQENGEV--QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-------S 119
L + + +L T S++W LA G S + +W E
Sbjct: 38 LVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEM 97
Query: 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEV 176
L+ +EGH+ V +W++ +G+ L + S+DKS+ + S I H+ +V
Sbjct: 98 DLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Query: 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLA 235
+ W LLAS D+ V +W +C+ H V + + L
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIWK-DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215
Query: 236 SGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDG 289
SG D +++W L + H +++ + G S DG
Sbjct: 216 SGSD--DSTVRVWKYMGDDEDDQ-QEWVCEAIL-PDVHKRQVYNVAWGFNGLIASVGADG 271
Query: 290 QKLCLWKY----PHMTKWGELQHQTSRILELSQ-SPDGLTV-VSAAADETLRFWEA 339
L +++ + L H I + +G T+ + D + FW
Sbjct: 272 -VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-26
Identities = 60/298 (20%), Positives = 109/298 (36%), Gaps = 61/298 (20%)
Query: 79 KLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----KLIRNLEGHDKRVA 133
L+K + S +SQ LA G K++L + + + H K +
Sbjct: 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR 62
Query: 134 TASWNHWNGHILTSGSQDKSII------NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187
+ +W + +L +GS D ++ + D ++ + I H EV G+ WSN+G
Sbjct: 63 SVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY 121
Query: 188 LASGGDDNLVHVWD-HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246
LA+ D V +W+ +C+ ++H VK + W P + +LAS D ++
Sbjct: 122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSY--DDTVR 178
Query: 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------FSSSGDGQKLC------ 293
IW C +L+GH F + +LC
Sbjct: 179 IWKDYDDD---------WECV--------AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221
Query: 294 ---LWKYPHMTKWGELQHQ---------TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+WKY + + + ++ ++ +G + S AD L +E
Sbjct: 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEE 278
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 3e-19
Identities = 45/269 (16%), Positives = 85/269 (31%), Gaps = 54/269 (20%)
Query: 118 TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTA 174
+ LI++L+ + +++ + ++ IL +GS D+ I V+ + + AH
Sbjct: 3 SINLIKSLKLYKEKIWSFD---FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKK 59
Query: 175 EVCGLKWSNEGNLLASGGDDNLVHVWD----HSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230
+ + W +LLA+G D+ V +W + L H VK +AW
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-D 118
Query: 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------F 283
LA+ D + IW + + +L H +
Sbjct: 119 GYYLATCSR--DKSVWIWETDESGEEYEC---------------ISVLQEHSQDVKHVIW 161
Query: 284 SSSGDGQKL---------CLWKYPHMTKWGELQ----HQTSRILELSQSPDGLT--VVSA 328
L +WK + W + H + + S
Sbjct: 162 HP--SEALLASSSYDDTVRIWK-DYDDDWECVAVLNGH-EGTVWSSDFDKTEGVFRLCSG 217
Query: 329 AADETLRFWEAFGPSGSGDFVSHLDGLLS 357
+ D T+R W+ G + +L
Sbjct: 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILP 246
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 7e-18
Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 26/204 (12%)
Query: 69 LWKQENG-EVQKLLKV-TGEDDFPTSISWSQDAKTLAVGYMASK---LQLWDAETS--KL 121
+W+ + E + + V + W LA S +++W +
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS---SYDDTVRIWKDYDDDWEC 189
Query: 122 IRNLEGHDKRVATASWNHWNGHI--LTSGSQDKSI--------INHDVRVSNNVTSRINA 171
+ L GH+ V ++ ++ + L SGS D ++ D + +
Sbjct: 190 VAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV 248
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVWD-HSKMSSSKCLHRFRDHRAAVKALAWC-PY 229
H +V + W G L+AS G D ++ V++ + + W
Sbjct: 249 HKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELN 307
Query: 230 QFNVLASGGGTQDGCIKIWNVQKG 253
+LA+GG DG + W+++K
Sbjct: 308 GKTILATGGD--DGIVNFWSLEKA 329
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 37/286 (12%), Positives = 75/286 (26%), Gaps = 36/286 (12%)
Query: 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASW 137
+L + D ++ + L + L++ + + A +
Sbjct: 47 IVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-MLKRADYTAVDTA 105
Query: 138 NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197
G+ + I D N AH +E+ LK+ G L S D +
Sbjct: 106 KL-QMRRFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQL 163
Query: 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCIKIWNVQKGT 254
+W + HRA V +A + S DG I++W GT
Sbjct: 164 KIWS---VKDGSNPRTLIGHRATVTDIAIIDRGRN----VLSASL--DGTIRLWECGTGT 214
Query: 255 CI-----HSVDTKAQICGLEWNRHHKEILSGHGFSS-----SGDGQKL---------CLW 295
I + +++ G+ + +
Sbjct: 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274
Query: 296 KYPHMTKWGE-LQHQTSRILELSQS-PDGLTVVSAAADETLRFWEA 339
+ + T L+ + + + + L W+
Sbjct: 275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-25
Identities = 40/317 (12%), Positives = 83/317 (26%), Gaps = 63/317 (19%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+ +++ + T + + + L +L++W + R L GH
Sbjct: 123 VLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180
Query: 129 DKRVATASWNHWNGHILTSGSQDKSI-----------------------INHDVRVSNNV 165
V + G + S S D +I +N
Sbjct: 181 RATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTD 239
Query: 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225
T++ L++ G + +G ++ V + S + + + +L
Sbjct: 240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF--SKEQTIQLPSKFTCSCNSLT 297
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG--- 282
N + +G +G + W+++ C E L G
Sbjct: 298 VDGNNANYIYAGYE--NGMLAQWDLRSPECP-----------------VGEFLINEGTPI 338
Query: 283 ----FS------SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332
F+ SSG + L + +S + DE
Sbjct: 339 NNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398
Query: 333 TLRFWEAFGPSGSGDFV 349
+ G +F
Sbjct: 399 SNGEVLE---VGKNNFC 412
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 40/278 (14%), Positives = 77/278 (27%), Gaps = 71/278 (25%)
Query: 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW-- 140
+ DF + + + + L + G+ + V N +
Sbjct: 11 AHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIV----VLGNSRGVDAGKGNTFEK 66
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVT---SRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197
G L D + N + S++ + G + +
Sbjct: 67 VGSHLYKARLDGHD-----FLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDI 121
Query: 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257
V D + + + H + + L + P L S QD +KIW+V+ G+
Sbjct: 122 KVLD---SNFNLQREIDQAHVSEITKLKFFP-SGEALISSS--QDMQLKIWSVKDGSNPR 175
Query: 258 SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317
L GH + + +++
Sbjct: 176 -------------------TLIGH----------------------------RATVTDIA 188
Query: 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGL 355
G V+SA+ D T+R WE G+G + +
Sbjct: 189 IIDRGRNVLSASLDGTIRLWEC----GTGTTIHTFNRK 222
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 9e-18
Identities = 16/183 (8%), Positives = 54/183 (29%), Gaps = 21/183 (11%)
Query: 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATASWNHWN 141
++ + K + G+++ + + + + + I+ + + + N
Sbjct: 243 HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN 302
Query: 142 GHILTSGSQDKSIINHDVRVSNNVTSRI-NAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ + +G ++ + D+R + + ++ G L S G D + +
Sbjct: 303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFDTSIKLD 361
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNV------------LASGGGTQDGCIKIW 248
+S + + ++ L G + ++
Sbjct: 362 I---ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK---NNFCALY 415
Query: 249 NVQ 251
N+
Sbjct: 416 NLS 418
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 21/178 (11%), Positives = 49/178 (27%), Gaps = 23/178 (12%)
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVW---DHSKMSSSKCLHRFRDHRA---AVKALA 225
T + + + D+N + D + + + A K
Sbjct: 4 MTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNT 63
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285
+ + L DG ++N + + + G
Sbjct: 64 FEK-VGSHLYKARL--DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILG----- 115
Query: 286 SGDGQKLCLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ +G + + + + + S I +L P G ++S++ D L+ W
Sbjct: 116 TTEG-DIKVLD----SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 11/97 (11%), Positives = 26/97 (26%), Gaps = 13/97 (13%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
L W + E + E ++ ++ + ++L + R
Sbjct: 315 LAQWDLRSPECPVGEFLINEGTPINNVYFAAG-ALFVSSGFDTSIKLDIISDPESERPAI 373
Query: 127 GHD------------KRVATASWNHWNGHILTSGSQD 151
+ + S + NG +L G +
Sbjct: 374 EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-28
Identities = 53/328 (16%), Positives = 109/328 (33%), Gaps = 72/328 (21%)
Query: 69 LWKQENGEVQKLLKV---TGEDDFPTSISWSQDAKT----LAVGYMASKLQLWDAETSKL 121
L++ + +LL+ D+ + +W+ D+ T LAV +++ + T +
Sbjct: 48 LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC 107
Query: 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSII--NHDVRVSNNVTSRINAHTAEVCGL 179
I++ GH + ++ + ++L S S+D ++ N + + H EV
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA-------------------- 219
+ G + S G D+ + +W ++S + ++ ++
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWR---INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224
Query: 220 --------AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWN 271
V + W +++ S + I W K D +I E N
Sbjct: 225 STRDIHRNYVDCVRWLG---DLILSKSC--ENAIVCWKPGKME-----DDIDKIKPSESN 274
Query: 272 RHHKEILSGHG-------FSSSGDGQKL---------CLW----KYPHMTKWGELQHQT- 310
FS + L +W + PH K L H
Sbjct: 275 VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC 334
Query: 311 -SRILELSQSPDGLTVVSAAADETLRFW 337
+ I + S S D +++ D ++ W
Sbjct: 335 GAAIRQTSFSRDSSILIAVCDDASIWRW 362
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 6e-14
Identities = 29/202 (14%), Positives = 66/202 (32%), Gaps = 40/202 (19%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
LW+ + + +K S ++ + + K+ D T + H
Sbjct: 187 LWRINSKRMMNAIK--------ESYDYNPNKTNRPFI--SQKIHFPDFST------RDIH 230
Query: 129 DKRVATASWNHWNGHILTSGSQDKSII-------------NHDVRVSNNVTSRINAHTAE 175
V W G ++ S S + +I+ + + R + +
Sbjct: 231 RNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD 287
Query: 176 VCGLKWS--NEGNLLASGGDDNLVHVWD-HSKMSSSKCLHRFRDHR--AAVKALAWCPYQ 230
+ +++S +LA G ++VWD + H+ AA++ ++
Sbjct: 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-D 346
Query: 231 FNVLASGGGTQDGCIKIWNVQK 252
++L + D I W+ +
Sbjct: 347 SSILIAVC--DDASIWRWDRLR 366
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 7e-09
Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 32/177 (18%)
Query: 207 SSKCLHR-FRDHRAAVKALAWCPY----QFNVLASGGGTQDGCIKIWNVQKGTCIH---- 257
S KC++ DH + + + + V A+ G + ++ I
Sbjct: 6 SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVG---SNRVTLYECHSQGEIRLLQS 62
Query: 258 --SVDTKAQICGLEW----NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS 311
D W N H + G + + M +
Sbjct: 63 YVDADADENFYTCAWTYDSNTSHPLLAVA-----GSRGI-IRIINPITMQCIKHYVGHGN 116
Query: 312 RILELSQSP-DGLTVVSAAADETLRFWEAFGPSGS-----GDFVSHLDGLLSLKVSP 362
I EL P D ++S + D LR W + + G H D +LS
Sbjct: 117 AINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGHRDEVLSADYDL 171
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 36/271 (13%), Positives = 76/271 (28%), Gaps = 43/271 (15%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETS--KLIRNLEGHDKRVATASWNHWNGHILTSG 148
+++ ++++L++ + + K R HDK V W + + +
Sbjct: 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTC 73
Query: 149 SQDKSII--NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD-HSKM 205
SQD++ + T + ++WS + A G ++ V +
Sbjct: 74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133
Query: 206 SSSKCLHRFRDHRAAVKALAWCPYQFN--VLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263
H R R+ + +L W P N +LA+G D + +
Sbjct: 134 DWWVSKHLKRPLRSTILSLDWHP---NNVLLAAGCA--DRKAYVLSAYVRDVDAK----- 183
Query: 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL 323
+ S +C + + SP G
Sbjct: 184 --------------PEASVWGSRLPFNTVCA-----------EYPSGGWVHAVGFSPSGN 218
Query: 324 TVVSAAADETLRFWEAFGPSGSGDFVSHLDG 354
+ A D ++ P + +
Sbjct: 219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKL 249
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 7e-22
Identities = 41/317 (12%), Positives = 83/317 (26%), Gaps = 39/317 (12%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIRNL 125
L++Q+ + + D T + W+ + + +++ K L
Sbjct: 37 LYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGLKWS 182
++ W N GS + I N+ + + L W
Sbjct: 97 LRLNRAATFVRW-SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH 155
Query: 183 NEGNLLASGGDDNLVHVWD--------------HSKMSSSKCLHRFRDHRAAVKALAWCP 228
LLA+G D +V + V A+ + P
Sbjct: 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP 215
Query: 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS--- 285
N LA G D + I + + + S +++
Sbjct: 216 SG-NALAYAGH--DSSVTIAYPSAP-------EQPPRALITVKLSQLPLRSLL-WANESA 264
Query: 286 ---SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342
+G L + + + W + + + S + G T + + F
Sbjct: 265 IVAAGYNYSPILLQG-NESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323
Query: 343 SGSGDFVSHLDGLLSLK 359
+ D + SL
Sbjct: 324 FRNMDLKGSSQSISSLP 340
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 9e-19
Identities = 46/304 (15%), Positives = 94/304 (30%), Gaps = 40/304 (13%)
Query: 68 YLW-KQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----KLI 122
Y++ K+ +G ++ L + + T + WS + AVG A + + E
Sbjct: 80 YVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK 139
Query: 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSI-----------INHDVRVSN-----NVT 166
+ + W+ N +L +G D+ + V N
Sbjct: 140 HLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV 198
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK-MSSSKCLHRFRDHRAAVKALA 225
V + +S GN LA G D+ V + S + L + + +++L
Sbjct: 199 CAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLL 258
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285
W + ++A+G + + + H+ D A +
Sbjct: 259 WAN-ESAIVAAGY---NYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGP 314
Query: 286 SGDGQKLCLWKYPHMTKWGELQHQTSR----------ILELSQSPDGLTVV-SAAADETL 334
++ +M G Q +S + + +P +T S+ D +
Sbjct: 315 VSFTALRSTFR--NMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRV 372
Query: 335 RFWE 338
W
Sbjct: 373 VLWT 376
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 3e-17
Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 22/193 (11%)
Query: 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL 224
+ ++ ++++ + N V +++ + K F DH V +
Sbjct: 3 TSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDG-NGWKHARTFSDHDKIVTCV 61
Query: 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS----- 279
W P N + + QD ++ + L R ++
Sbjct: 62 DWAPKS-NRIVTCS--QDRNAYVYEKRPD--------GTWKQTLVLLRLNRAATFVRWSP 110
Query: 280 -GHGFSSSGDGQKLCLWKYPHMTKWGE----LQHQTSRILELSQSPDGLTVVSAAADETL 334
F+ + + + + W + S IL L P+ + + + AD
Sbjct: 111 NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKA 170
Query: 335 RFWEAFGPSGSGD 347
A+
Sbjct: 171 YVLSAYVRDVDAK 183
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 5e-09
Identities = 31/255 (12%), Positives = 63/255 (24%), Gaps = 74/255 (29%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ ++QEN S+ W + LA G K + A + E
Sbjct: 126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185
Query: 127 -----------------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVT 166
V ++ +G+ L D S+
Sbjct: 186 ASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRAL 244
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS----------------------- 203
+ + L W+NE ++A+G + + + + +
Sbjct: 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGN 304
Query: 204 -----------KMSSSKCLHRFRDHRA-----------------AVKALAWCPYQFNVLA 235
++ + R D + ++ A P
Sbjct: 305 TGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFT 364
Query: 236 SGGGTQDGCIKIWNV 250
S G DG + +W +
Sbjct: 365 SSG--TDGRVVLWTL 377
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 9e-28
Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 28/302 (9%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W +V+K + G + + L + + E + + GH
Sbjct: 265 IWNVATLKVEKTIP-VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
+K + S + +G L S + I + D+ + + H + G+K +++G+L
Sbjct: 324 NKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
DD+L V + LA ++ + I I+
Sbjct: 383 TVSWDDHLK-VVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAAC---YKHIAIY 437
Query: 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308
+ K T V + + + + G D K+ ++K +
Sbjct: 438 SHGKLT---EVPISYNSSCVALSNDKQFVAVG-----GQDS-KVHVYK----LSGASVSE 484
Query: 309 QT-----SRILELSQSPDGLTVVSAAADETLRFWEAFG---PSGSGDFVSHLDGLLSLKV 360
+ I ++ S +G +V+ + + + + + H + +
Sbjct: 485 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 544
Query: 361 SP 362
SP
Sbjct: 545 SP 546
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 56/308 (18%), Positives = 104/308 (33%), Gaps = 31/308 (10%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEG 127
++ + G L TG+ S+ + + G + + +++ K
Sbjct: 131 VFLFDTGTSNGNL--TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDV------RVSNNVTSRINAHTAEVCGLKW 181
H K V + +N +G + S D +I+ ++ V + + + AH+ V GL W
Sbjct: 189 HTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247
Query: 182 SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGGGT 240
S +G +AS D + +W+ +++ K R + L L S
Sbjct: 248 SPDGTKIASASADKTIKIWN---VATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISA- 302
Query: 241 QDGCIKIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298
+G I N + G+ KA I L + K + S +G + W
Sbjct: 303 -NGFINFVNPELGSIDQVRYGHNKA-ITALSSSADGKTLFSA-----DAEG-HINSWDIS 354
Query: 299 HMTKWGEL-QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG---PSGSGDFVSHLDG 354
+ I + + G + + + D+ L+ A G S
Sbjct: 355 TGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413
Query: 355 LLSLKVSP 362
L L VS
Sbjct: 414 PLGLAVSA 421
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 38/272 (13%), Positives = 77/272 (28%), Gaps = 60/272 (22%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+ +G P ++ S D + ++ KL +
Sbjct: 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY-KHIAIYS--HGKLTEVPISY 449
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
+ S + + G QD + + + ++ + H AE+ + +SN G L
Sbjct: 450 NSSCVALSND---KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 506
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCI 245
+ V + + + + H A V ++W P LA+G D +
Sbjct: 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR----LATGSL--DNSV 560
Query: 246 KIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305
+WN+ K + + H ++
Sbjct: 561 IVWNMNKPSDH---------PIIIKGAHAMSSVNS------------------------- 586
Query: 306 LQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
+ T+VSA D ++FW
Sbjct: 587 -----------VIWLNETTIVSAGQDSNIKFW 607
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 36/300 (12%), Positives = 87/300 (29%), Gaps = 65/300 (21%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---LIRNL 125
W G ++ T I + V + L++ A S
Sbjct: 350 SWDISTGISNRVF-PDVHATMITGIKTTSKGDLFTVSW-DDHLKVVPAGGSGVDSSKAVA 407
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185
+ + + +G I + + + ++ + + SN+
Sbjct: 408 NKLSSQPLGLAVSA-DGDIAVAACYKH------IAIYSHGKLTEVPISYNSSCVALSNDK 460
Query: 186 NLLASGGDDNLVHVWDHSKMSSSKCLH-RFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
+A GG D+ VHV+ +S + + H A + ++A+ L +
Sbjct: 461 QFVAVGGQDSKVHVYK---LSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQ--SRK 514
Query: 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304
+ ++V + ++ + H
Sbjct: 515 VIPYSVANNFELAHTNS----------------WTFH----------------------- 535
Query: 305 ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV--SHLDGLLSLKVSP 362
T+++ +S SPD + + + + D ++ W PS + +H ++ +
Sbjct: 536 -----TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 47/293 (16%), Positives = 87/293 (29%), Gaps = 65/293 (22%)
Query: 57 NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116
+ + G +Y + ++ T T S A G + +++WD
Sbjct: 31 DKIQYCNGTSVYTVPVGSLTDTEIY--TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 88
Query: 117 ETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV----SNNVTSRIN 170
+ L + V SW+ + + + + V + +
Sbjct: 89 TQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERF---GHVFLFDTGTSNGNLT 144
Query: 171 AHTAEVCGLKWSNEGNL-LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP- 228
+ + + + SG DDN V +++ K F +H V ++ + P
Sbjct: 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFE---GPPFKFKSTFGEHTKFVHSVRYNPD 201
Query: 229 --YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286
AS GG DG I ++N GT H
Sbjct: 202 GSL----FASTGG--DGTIVLYNGVDGTKTGVF------------EDDSLKNVAH----- 238
Query: 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ + L+ SPDG + SA+AD+T++ W
Sbjct: 239 -----------------------SGSVFGLTWSPDGTKIASASADKTIKIWNV 268
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 4e-23
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Query: 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSG 148
+ ++ S D + +AVG SK+ ++ + + H + + ++++ NG L +
Sbjct: 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVAT 509
Query: 149 SQDKSIINHDV--RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206
Q + +I + V T+ HTA+V + WS + LA+G DN V VW+ +K
Sbjct: 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK-P 568
Query: 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250
S + H + + + S G QD IK WNV
Sbjct: 569 SDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAG--QDSNIKFWNV 609
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI---R 123
++++K V ++ K TS+++S + L + K+ + + +
Sbjct: 472 VHVYKLSGASVSEV-KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV-RVSNNVTSRINAHTAEVCGLKWS 182
+ H +VA SW+ + L +GS D S+I ++ + S++ AH
Sbjct: 531 SWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 589
Query: 183 NEGNLLASGGDDNLVHVWD 201
+ S G D+ + W+
Sbjct: 590 LNETTIVSAGQDSNIKFWN 608
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 43/312 (13%), Positives = 92/312 (29%), Gaps = 40/312 (12%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W NGE L G SI K G ++LWD + + +
Sbjct: 58 VWYSLNGERLGTLD--GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP 115
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRV----SNNVTSRINAHTAE--------- 175
V ++ G+ + + + + ++ T + + E
Sbjct: 116 V-PVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173
Query: 176 ----VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231
WS +G + +G D + +D S ++ + + H ++ + + P
Sbjct: 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVS--NNYEYVDSIDLHEKSISDMQFSPDL- 230
Query: 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGF-------- 283
+ D + +V + +T + + I+ G G
Sbjct: 231 TYFITSSR--DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTT 288
Query: 284 -SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342
++ G + + + G +Q + ++ SP G + S D +R
Sbjct: 289 SANEGKF-EARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF--- 344
Query: 343 SGSGDFVSHLDG 354
F D
Sbjct: 345 -EKSYFDFKYDV 355
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-26
Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 39/263 (14%)
Query: 99 AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158
+ + +S L+ + L GH++ + +N G +L S S+D S
Sbjct: 2 GSSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSA---- 56
Query: 159 VRVSNNVTSR----INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF 214
V ++ ++ HT + + +G D + +WD +S+ +C+ +
Sbjct: 57 -SVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD---VSNGQCVATW 112
Query: 215 RDHRAAVKALAWCPYQFNVLASG---GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWN 271
+ VK + + P N + G I I+ +++ + H + ++ +
Sbjct: 113 K-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170
Query: 272 RHH--------------KEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILEL 316
H K I++G DG K+ + + ++ + + I ++
Sbjct: 171 THEGLDAATVAGWSTKGKYIIAG-----HKDG-KISKYDVSNNYEYVDSIDLHEKSISDM 224
Query: 317 SQSPDGLTVVSAAADETLRFWEA 339
SPD ++++ D +
Sbjct: 225 QFSPDLTYFITSSRDTNSFLVDV 247
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 44/304 (14%), Positives = 103/304 (33%), Gaps = 40/304 (13%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
L+ Q + K +K+TG + T + ++++ L S +W + + + L+GH
Sbjct: 16 LYFQGSH--MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH 73
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA---HTAEVCGLKWSNEG 185
+ + + +GS D SI ++ + + A V +++S G
Sbjct: 74 TGTIWSIDVD-CFTKYCVTGSADYSI-----KLWDVSNGQCVATWKSPVPVKRVEFSPCG 127
Query: 186 NLLASGGDDNL-----VHVWDHS--------KMSSSKCLHRFRDH--RAAVKALAWCPYQ 230
N + D+ + +++++ S + +H+ H A W
Sbjct: 128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG 187
Query: 231 FNVLASGGGTQDGCIKIWNVQKGT-CIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGD 288
+ +G DG I ++V + S+D + I ++++ ++ S D
Sbjct: 188 -KYIIAGHK--DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS-----SRD 239
Query: 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF 348
L + + + + +P ++ E + G F
Sbjct: 240 T-NSFLVDVSTLQVLKKYETDCP-LNTAVITPLKEFIILGGGQEAKDVTTTS--ANEGKF 295
Query: 349 VSHL 352
+
Sbjct: 296 EARF 299
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 5e-20
Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 18/213 (8%)
Query: 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-S 119
I + + + E + D T WS K + G+ K+ +D
Sbjct: 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY 208
Query: 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179
+ + +++ H+K ++ ++ + + S+D + DV + V + +
Sbjct: 209 EYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVS-TLQVLKKYETDCP-LNTA 265
Query: 180 KWSNEGNLLASGGDDNLVHVWDHSKMS-----------SSKCLHRFRDHRAAVKALAWCP 228
+ + GG V S + + R + H + +A P
Sbjct: 266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP 325
Query: 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261
Q ASGG DG I++ + +K D
Sbjct: 326 -QGTSYASGGE--DGFIRLHHFEKSYFDFKYDV 355
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-14
Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 17/164 (10%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+ N + + + + + + +S D + L D T ++++ E
Sbjct: 201 KYDVSNNY-EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD 259
Query: 129 D-----------KRVATASW-NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV 176
+ + + ++ + + R+ H +
Sbjct: 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK-IFEEEIGRVQGHFGPL 318
Query: 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA 220
+ S +G ASGG+D + + S ++ +AA
Sbjct: 319 NTVAISPQGTSYASGGEDGFIRLHH---FEKSYFDFKYDVEKAA 359
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 42/290 (14%), Positives = 90/290 (31%), Gaps = 32/290 (11%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWS-QDAKTLAVGYMASKLQLWDAET--SKLIRNL 125
LW + ++ G D T + ++ + L V + L D ++
Sbjct: 100 LWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKT 159
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185
+ D + + +L +G ++ + + + H A+V +++
Sbjct: 160 DSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRC 216
Query: 186 -NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
L+A+ D V +WD + H V A + P L + Q
Sbjct: 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD--QRNE 274
Query: 245 IKIWNVQKGTCI-----HSVDTKAQICGLE--WNRHHKEILSG----HGFSSSGDGQKLC 293
I++++ + H + ++ W+ + I++G + +
Sbjct: 275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRT-ID 333
Query: 294 LWKYPHMTKWGELQHQ------TSRILELSQSPDGLTVVSAAADETLRFW 337
++ G L HQ I SP G + S + W
Sbjct: 334 IYD----ANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS-GMGFNILIW 378
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 44/276 (15%), Positives = 93/276 (33%), Gaps = 19/276 (6%)
Query: 73 ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQ---LWDAETSKLIRNLEGHD 129
+ G K G+ I S +++ + LQ + ++ KL R D
Sbjct: 15 QGGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQ-LRQCLQEPFIRSLKSYKLHRTASPFD 73
Query: 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWS-NEGNL 187
+RV + W+ + + GS+ II D V N + + G+K++ N
Sbjct: 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133
Query: 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247
L + D S S + + + + +LA+G G + +
Sbjct: 134 LFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDS--TGRLLL 189
Query: 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307
+ KA++ E+N +++ +SS D + LW ++
Sbjct: 190 LGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMA----TSSVD-ATVKLWDLRNIKDKNSYI 244
Query: 308 HQ---TSRILELSQSP-DGLTVVSAAADETLRFWEA 339
+ + +P D +++ +R + +
Sbjct: 245 AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 30/205 (14%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNL 125
L L + E+ K T ++ L A + + ++LWD K +
Sbjct: 187 LLLLGLDGHEIFKE---KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 243
Query: 126 ---EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGL 179
H+K V A +N + L + Q I + + I + + +
Sbjct: 244 IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI 303
Query: 180 K--WSNEGNLLASGG---------DDNLVHVWDHSKMSSSKCLHRFRDH--RAAVKALAW 226
K W +L+ +G D + ++D +S +H+ RD + +
Sbjct: 304 KATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYD---ANSGGLVHQLRDPNAAGIISLNKF 360
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQ 251
P +VLASG I IWN +
Sbjct: 361 SPTG-DVLASGM---GFNILIWNRE 381
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 48/322 (14%), Positives = 111/322 (34%), Gaps = 73/322 (22%)
Query: 69 LWKQENGEVQKLLKVTGEDDFP--TSISWSQDAKTLAVGYMASKLQLWDAET-SKLIRNL 125
L++ ++G+++ L ++ T + S + LA G L +W+ E + ++
Sbjct: 48 LYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV 107
Query: 126 EGHDKRVATASWNHW-----NGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEVC 177
+GH + + + +GS+D ++ D R ++ + + C
Sbjct: 108 KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167
Query: 178 -----GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP--YQ 230
G ++ E ++ +G D+ + ++D + L + + V +L +
Sbjct: 168 WTVAFGNAYNQEERVVCAGYDNGDIKLFD----LRNMALRWETNIKNGVCSLEFDRKDIS 223
Query: 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------F 283
N L + +G +++++ T+ G H
Sbjct: 224 MNKLVATSL--EGKFHVFDMR---------TQHPTKGFASV-----SEKAHKSTVWQVRH 267
Query: 284 S--------SSGDGQKLCLWKYPHMTKWGELQHQTSRI-----------LELSQ------ 318
++G L LWKY + + + + + + LS
Sbjct: 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327
Query: 319 --SPDGLTV-VSAAADETLRFW 337
SPD + V ++ D+T+R
Sbjct: 328 DWSPDKRGLCVCSSFDQTVRVL 349
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 3e-21
Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 40/303 (13%)
Query: 69 LWKQENGE-VQKLLKVTGEDDFPTSISWSQDAKTLAV-GYMASK---LQLWDAETSKLIR 123
+ E + + + K G + W + G A +QL++ + L
Sbjct: 1 MSAFEKPQIIAHIQK--GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL 58
Query: 124 NLE-GHDKRVATASWNHW--NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180
E K + ++ L +G ++ ++ + H + +
Sbjct: 59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAID 118
Query: 181 WSNE------GNLLASGGDDNLVHVWD-HSKMSSSKCL-----HRFRDHRAAVKALAWCP 228
+ +G D V VWD K + RD A+
Sbjct: 119 GIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ 178
Query: 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR---HHKEILSGHGFSS 285
+ V+ +G +G IK+++++ + K +C LE++R ++++
Sbjct: 179 -EERVVCAGYD--NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT----- 230
Query: 286 SGDGQKLCLW-----KYPHMTKWGELQHQTSRILELSQSPDGLTV-VSAAADETLRFWEA 339
S +G K ++ + S + ++ P + ++A L W+
Sbjct: 231 SLEG-KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289
Query: 340 FGP 342
P
Sbjct: 290 EYP 292
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 27/189 (14%), Positives = 61/189 (32%), Gaps = 26/189 (13%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNH--WNGHILTSG 148
+++Q+ + + GY ++L+D L V + ++ + + L +
Sbjct: 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVAT 230
Query: 149 SQDKSIINHDVRVSNNV----TSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHS 203
S + D+R + + AH + V ++ + L + G +H+W +
Sbjct: 231 SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290
Query: 204 K----------------MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247
S L + +L W P + + D +++
Sbjct: 291 YPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF--DQTVRV 348
Query: 248 WNVQKGTCI 256
V K I
Sbjct: 349 LIVTKLNKI 357
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-15
Identities = 34/281 (12%), Positives = 88/281 (31%), Gaps = 43/281 (15%)
Query: 113 LWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSG---SQDKSIINHDVRVSNNVTSR 168
+ E ++I + +G + V W + +T G I ++++ + R
Sbjct: 1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR 60
Query: 169 INAHTAE---VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225
S + LA+G +H+W+ + ++ + H+ + A+
Sbjct: 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE--APEMPVYSVKGHKEIINAID 118
Query: 226 WCPYQ-F----NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280
+ +G DG +K+W+ ++ + +K
Sbjct: 119 GIGGLGIGEGAPEIVTGSR--DGTVKVWDPRQKDDPVA-------NMEPVQGENKRDCWT 169
Query: 281 HGFSS--SGDGQKLC---------LWKYPHMTKWGELQHQTSRILELSQSPDGL---TVV 326
F + + + + +C L+ +M E + + L + +V
Sbjct: 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI-KNGVCSLEFDRKDISMNKLV 228
Query: 327 SAAADETLRFWEAFGPSGSGDFVS-----HLDGLLSLKVSP 362
+ + + ++ + F S H + ++ P
Sbjct: 229 ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP 269
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 65/284 (22%), Positives = 113/284 (39%), Gaps = 52/284 (18%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
W++ + K+LK G DD + + G + L++W A T K +R L GH
Sbjct: 102 NWRRGELKSPKVLK--GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 158
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRV----SNNVTSRINAHTAEVCGLKWSNE 184
V ++ +I+ SGS D+++ +V + + HT+ V +
Sbjct: 159 TGGVWSSQ---MRDNIIISGSTDRTL-----KVWNAETGECIHTLYGHTSTVRCMHLH-- 208
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
+ SG D + VWD + + +CLH H AAV+ + + + SG D
Sbjct: 209 EKRVVSGSRDATLRVWD---IETGQCLHVLMGHVAAVRCVQYDG---RRVVSGAY--DFM 260
Query: 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS-----GHGFSSSGDGQKLCLWKYPH 299
+K+W+ + TC+H+ + G H + S H S S D + +W
Sbjct: 261 VKVWDPETETCLHT------LQG-----HTNRVYSLQFDGIHVVSGSLDT-SIRVWD--- 305
Query: 300 MTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ G H S + + +VS AD T++ W+
Sbjct: 306 -VETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI 346
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 4e-23
Identities = 55/287 (19%), Positives = 101/287 (35%), Gaps = 54/287 (18%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
LW+++ E + + + A W K + L+GH
Sbjct: 58 LWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGH 117
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
D V T G+ + SGS D ++ + + HT V + N++
Sbjct: 118 DDHVITC-LQF-CGNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMR--DNII 172
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
SG D + VW+ + +C+H H + V+ + + SG D +++W
Sbjct: 173 ISGSTDRTLKVWN---AETGECIHTLYGHTSTVRCMHLHE---KRVVSGSR--DATLRVW 224
Query: 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG---FSSSGDGQKL---------CLWK 296
+++ G C+H +L GH DG+++ +W
Sbjct: 225 DIETGQCLH-------------------VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD 265
Query: 297 YPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ H T+R+ S DG+ VVS + D ++R W+
Sbjct: 266 ----PETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV 306
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 55/271 (20%), Positives = 98/271 (36%), Gaps = 64/271 (23%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W E GE L G + + K + G + L++WD ET + + L GH
Sbjct: 183 VWNAETGECIHTLY--GHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGH 238
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
V ++ G + SG+ D + D + + HT V L++ G +
Sbjct: 239 VAAVRCVQYD---GRRVVSGAYDFMVKVWDPE-TETCLHTLQGHTNRVYSLQFD--GIHV 292
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
SG D + VWD + + C+H H++ + N+L SG D +KIW
Sbjct: 293 VSGSLDTSIRVWD---VETGNCIHTLTGHQSLTSGMELKD---NILVSGNA--DSTVKIW 344
Query: 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308
+++ G C+ L G +H
Sbjct: 345 DIKTGQCLQ-------------------TLQGPN------------------------KH 361
Query: 309 QTSRILELSQSPDGLTVVSAAADETLRFWEA 339
S + L + + V++++ D T++ W+
Sbjct: 362 -QSAVTCLQFNKN--FVITSSDDGTVKLWDL 389
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 7e-20
Identities = 54/276 (19%), Positives = 98/276 (35%), Gaps = 71/276 (25%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W E G+ +L G + + D + + G +++WD ET + L+GH
Sbjct: 223 VWDIETGQCLHVLM--GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH 278
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR----INAHTAEVCGLKWSNE 184
RV + ++ G + SGS D SI RV + T + H + G++
Sbjct: 279 TNRVYSLQFD---GIHVVSGSLDTSI-----RVWDVETGNCIHTLTGHQSLTSGMELK-- 328
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFR---DHRAAVKALAWCPYQFNVLASGGGTQ 241
N+L SG D+ V +WD + + +CL + H++AV L + N + +
Sbjct: 329 DNILVSGNADSTVKIWD---IKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSD-- 380
Query: 242 DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301
DG +K+W+++ G I ++ T G
Sbjct: 381 DGTVKLWDLKTGEFIRNLVT--------------LESGGS-------------------- 406
Query: 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
+ + S L + + T
Sbjct: 407 --------GGVVWRIRASNTKLVCAVGSRNGTEETK 434
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 22/189 (11%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W E L G + S+ + D + G + + +++WD ET I L GH
Sbjct: 263 VWDPETETCLHTL--QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAHTAEVCGLKWSNEGN 186
+ +IL SG+ D ++ D++ + N H + V L+++ N
Sbjct: 319 QSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN 373
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLH-----RFRDHRAAVKALAWCPYQFNVLASGG--G 239
+ + DD V +WD + + + + V + V A G G
Sbjct: 374 FVITSSDDGTVKLWD---LKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNG 429
Query: 240 TQDGCIKIW 248
T++ + +
Sbjct: 430 TEETKLLVL 438
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 12/141 (8%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W E G L TG + + + L G S +++WD +T + ++ L+G
Sbjct: 303 VWDVETGNCIHTL--TGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP 358
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVR----VSNNVTSRINAHTAEVCGLKWSNE 184
+K + + +N + + + S D ++ D++ + N VT V ++ SN
Sbjct: 359 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418
Query: 185 GNLLASGGDDN----LVHVWD 201
+ A G + + V D
Sbjct: 419 KLVCAVGSRNGTEETKLLVLD 439
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 8e-27
Identities = 52/280 (18%), Positives = 84/280 (30%), Gaps = 70/280 (25%)
Query: 69 LWKQENGEVQKLLKV---TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--KLIR 123
+W + + + D++ S D TL VG AS L +WD ++
Sbjct: 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA----HTAEVCGL 179
L + + + + S D +I V + + HT +
Sbjct: 136 ELTSSAPACYALAISP-DSKVCFSCCSDGNI-----AVWDLHNQTLVRQFQGHTDGASCI 189
Query: 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239
SN+G L +GG DN V WD + + L + D + + +L +CP LA G
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWD---LREGRQLQQH-DFTSQIFSLGYCPTG-EWLAVGME 244
Query: 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299
+++ +V K L H
Sbjct: 245 --SSNVEVLHVNKPDKY--------------------QLHLH------------------ 264
Query: 300 MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
S +L L + G VS D L W
Sbjct: 265 ----------ESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 53/296 (17%), Positives = 86/296 (29%), Gaps = 57/296 (19%)
Query: 91 TSISWSQDAKTLAVGYMASKL-QLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGS 149
S + D + V + L ++ I L H + V + ++ + +G
Sbjct: 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN-PTRHVYTGG 70
Query: 150 QDKSI----INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205
+ + I+H S + K +G L GG+ + + +WD
Sbjct: 71 KG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD-LAA 128
Query: 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI 265
+ + A ALA P V S DG I +W++ T +
Sbjct: 129 PTPRIKAELTSSAPACYALAISP-DSKVCFSCCS--DGNIAVWDLHNQTLVR-------- 177
Query: 266 CGLEWNRHHKEILSGHG-------FSSSGDGQKL---------CLWKYPHMTKWGELQHQ 309
GH S+ DG KL W + G Q
Sbjct: 178 -----------QFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWD----LREGRQLQQ 220
Query: 310 ---TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
TS+I L P G + + P H +LSLK +
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAY 275
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 9e-24
Identities = 42/273 (15%), Positives = 85/273 (31%), Gaps = 64/273 (23%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W + ++T +++ S D+K + +WD L+R +GH
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
+ ++ +G L +G D ++ + D+R + T+++ L + G L
Sbjct: 183 TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWL 239
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCI 245
A G + + V V + ++ H + V +L + + S G D +
Sbjct: 240 AVGMESSNVEVLH----VNKPDKYQLHLHESCVLSLKFAYCGKW----FVSTGK--DNLL 289
Query: 246 KIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305
W G I S
Sbjct: 290 NAWRTPYGASIF--------------------QSKE------------------------ 305
Query: 306 LQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
+S +L S D +V+ + D+ +E
Sbjct: 306 ----SSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 31/182 (17%), Positives = 66/182 (36%), Gaps = 13/182 (7%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W N + + + G D + I S D L G + + ++ WD + ++
Sbjct: 167 VWDLHNQTLVRQFQ--GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DF 223
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
++ + + G L G + ++ V + ++ H + V LK++ G
Sbjct: 224 TSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQ--LHLHESCVLSLKFAYCGKWF 280
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
S G DNL++ W + ++V + + +G G D ++
Sbjct: 281 VSTGKDNLLNAWR---TPYGASIF-QSKESSSVLSCDISV-DDKYIVTGSG--DKKATVY 333
Query: 249 NV 250
V
Sbjct: 334 EV 335
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-26
Identities = 50/288 (17%), Positives = 98/288 (34%), Gaps = 53/288 (18%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG---YMASKLQLWDAETSKLIRNL 125
LW +++ + ++ F S+ + + + L G M + + L+ + L
Sbjct: 43 LWSKDDQWLGTVVY--TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL 100
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV--SNNVTSRINAHTAEVCGLKW-S 182
GH V + S + ++ SGS DK+ +V ++ + AH A V K S
Sbjct: 101 IGHQGNVCSLS---FQDGVVISGSWDKTA-----KVWKEGSLVYNLQAHNASVWDAKVVS 152
Query: 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQFNVLASGGGTQ 241
N + D + +W + K + F H V+ LA S
Sbjct: 153 FSENKFLTASADKTIKLWQ-----NDKVIKTFSGIHNDVVRHLAVVDD--GHFISCSN-- 203
Query: 242 DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQKLCLW 295
DG IK+ ++ G + + H + G S D + + +W
Sbjct: 204 DGLIKLVDMHTGDVLR-----------TYEGHESFVYCIKLLPNGDIVSCGED-RTVRIW 251
Query: 296 KYPHMTKWGE----LQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ G + I + +G ++ ++D +R +
Sbjct: 252 S----KENGSLKQVITLPAISIWSVDCMSNG-DIIVGSSDNLVRIFSQ 294
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 3e-20
Identities = 45/269 (16%), Positives = 94/269 (34%), Gaps = 57/269 (21%)
Query: 115 DAET-SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA-- 171
D T +L L+GHD+ V + + S S+D ++ R+ + +
Sbjct: 3 DPFTGYQLSATLKGHDQDVRDVVAVD-DSKVA-SVSRDGTV-----RLWSKDDQWLGTVV 55
Query: 172 --HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY 229
+ + + +E LL GG D +++ S L+ H+ V +L++
Sbjct: 56 YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD- 114
Query: 230 QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289
V+ SG D K+W G+ +++ H+ + S S +
Sbjct: 115 --GVVISGSW--DKTAKVWKE--GSLVYN-----------LQAHNASVWDAKVVSFSENK 157
Query: 290 -------QKLCLWKYPHMTKWGELQHQ-----TSRILELSQSPDGLTVVSAAADETLRFW 337
+ + LW + ++ + L+ DG +S + D ++
Sbjct: 158 FLTASADKTIKLW------QNDKVIKTFSGIHNDVVRHLAVVDDG-HFISCSNDGLIKLV 210
Query: 338 EAFGPSGSGDFVS----HLDGLLSLKVSP 362
+ +GD + H + +K+ P
Sbjct: 211 DM----HTGDVLRTYEGHESFVYCIKLLP 235
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 65/234 (27%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
L+ + L G S+S+ + G ++W L+ NL+ H
Sbjct: 88 LFATSGEDPLYTLI--GHQGNVCSLSFQDG--VVISGSWDKTAKVWK--EGSLVYNLQAH 141
Query: 129 D-------------KRVATASWNH----WN------------------------GHILTS 147
+ + TAS + W GH + S
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFI-S 200
Query: 148 GSQDKSIINHDVRVSNNVTSRINA----HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203
S D I ++ + T + H + V +K G++ S G+D V +W
Sbjct: 201 CSNDGLI-----KLVDMHTGDVLRTYEGHESFVYCIKLLPNGDI-VSCGEDRTVRIWS-- 252
Query: 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257
+ ++ ++ + G D ++I++ +K
Sbjct: 253 -KENGSLKQVITLPAISIWSVDCMS--NGDIIVGSS--DNLVRIFSQEKSRWAS 301
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-26
Identities = 45/298 (15%), Positives = 98/298 (32%), Gaps = 60/298 (20%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET----SKLIRN 124
+W K+ + + + +++ +A G + + +++ +T ++ R
Sbjct: 81 IWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH ++ + + I+ + S D + D+ + T+ HT +V L + +
Sbjct: 139 LAGHTGYLSCCRFLD-DNQIV-TSSGDTTCALWDIE-TGQQTTTFTGHTGDVMSLSLAPD 195
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
L SG D +WD + C F H + + A+ + P N A+G D
Sbjct: 196 TRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICFFP-NGNAFATGSD--DAT 249
Query: 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304
++++++ + S
Sbjct: 250 CRLFDLRADQELM-------------------TYSHDN---------------------- 268
Query: 305 ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
I +S S G +++ D W+A +G H + + L V+
Sbjct: 269 ----IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 6e-25
Identities = 45/276 (16%), Positives = 91/276 (32%), Gaps = 66/276 (23%)
Query: 69 LWKQENGEVQKLLKVT--GEDDFPTSISWSQDAKTLAVGYMAS---KLQLWDAETSKLIR 123
++ + E + G + + + D + + +S LWD ET +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT----SSGDTTCALWDIETGQQTT 178
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183
GH V + S + + SG+ D S DVR H +++ + +
Sbjct: 179 TFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFP 236
Query: 184 EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQ 241
GN A+G DD ++D + + + L + + + ++++ +L +G
Sbjct: 237 NGNAFATGSDDATCRLFD---LRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYD-- 290
Query: 242 DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301
D +W+ K +L+GH
Sbjct: 291 DFNCNVWDALKADRAG-------------------VLAGH-------------------- 311
Query: 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
+R+ L + DG+ V + + D L+ W
Sbjct: 312 --------DNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 6e-25
Identities = 43/257 (16%), Positives = 85/257 (33%), Gaps = 54/257 (21%)
Query: 107 MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
+ + + + R L GH ++ W + +L S SQD +I D + N
Sbjct: 33 ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSY-TTNKV 90
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD-HSKMSSSKCLHRFRDHRAAVKALA 225
I ++ V ++ GN +A GG DN+ +++ ++ + + H +
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285
+ N + + G D +W+++ G + +GH
Sbjct: 151 FLDD--NQIVTSSG--DTTCALWDIETGQQTTT-------------------FTGH---- 183
Query: 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345
T ++ LS +PD VS A D + + W+
Sbjct: 184 ------------------------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 346 GDFVSHLDGLLSLKVSP 362
F H + ++ P
Sbjct: 220 QTFTGHESDINAICFFP 236
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
LW G ++ TG + +I + + A G + +L+D + +
Sbjct: 210 LWDVREGMCRQTF--TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
Query: 129 DKR--VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
+ + + S++ +G +L +G D + D + + H V L +++G
Sbjct: 268 NIICGITSVSFSK-SGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 187 LLASGGDDNLVHVWD 201
+A+G D+ + +W+
Sbjct: 326 AVATGSWDSFLKIWN 340
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-26
Identities = 53/327 (16%), Positives = 103/327 (31%), Gaps = 84/327 (25%)
Query: 69 LWKQENGEVQK-----LLKVTGEDDFPTSISWSQDAKTLAVGYMAS--KLQLWDAETSKL 121
+ N + + L K + +S D + LA G Q++ L
Sbjct: 41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG---CNKTTQVYRVSDGSL 97
Query: 122 IRNLEGHDKRVATASWNHW-----------------NGHILTSGSQDKSIINHDVRVSNN 164
+ L + +G L +G++D+ I R+ +
Sbjct: 98 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI-----RIWDI 152
Query: 165 VTSRINA----HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA 220
+I H ++ L + G+ L SG D V +WD + + +C
Sbjct: 153 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD---LRTGQCSLTLSIEDG- 208
Query: 221 VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280
V +A P +A+G D +++W+ + G + +D E +G
Sbjct: 209 VTTVAVSPGDGKYIAAGSL--DRAVRVWDSETGFLVERLD------------SENESGTG 254
Query: 281 HG-------FSSSGDGQKL---------CLW--------KYPHMTKWGELQHQ----TSR 312
H F+ DGQ + LW G +
Sbjct: 255 HKDSVYSVVFTR--DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 313 ILELSQSPDGLTVVSAAADETLRFWEA 339
+L ++ + + ++S + D + FW+
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDK 339
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-24
Identities = 46/293 (15%), Positives = 92/293 (31%), Gaps = 76/293 (25%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W EN ++ +L+ G + S+ + L G +++WD T + L
Sbjct: 149 IWDIENRKIVMILQ--GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 129 DKRVATASWNHWNGHILTSGSQDKSII------NHDVRVSNNVTSRINAHTAEVCGLKWS 182
D V T + + +G + +GS D+++ V ++ H V + ++
Sbjct: 207 D-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 183 NEGNLLASGGDDNLVHVWD---------HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNV 233
+G + SG D V +W+ +S C + H+ V ++A
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEY 324
Query: 234 LASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------FSSS 286
+ SG D + W+ + G + +L GH ++
Sbjct: 325 ILSGSK--DRGVLFWDKKSGNPLL-------------------MLQGHRNSVISVAVANG 363
Query: 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
S P+ + + D R W+
Sbjct: 364 S-----------------------------SLGPEYNVFATGSGDCKARIWKY 387
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 33/209 (15%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWS-QDAKTLAVGYMASKLQLWDAETSKLIRNLE- 126
+W G+ L ED T+++ S D K +A G + +++WD+ET L+ L+
Sbjct: 191 IWDLRTGQCSLTLS--IEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 127 ------GHDKRVATASWNHWNGHILTSGSQDKSI-----------INHDVRVSNNVTSRI 169
GH V + + +G + SGS D+S+ + S
Sbjct: 248 ENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306
Query: 170 NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY 229
H V + + + SG D V WD S L + HR +V ++A
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWD---KKSGNPLLMLQGHRNSVISVAVANG 363
Query: 230 QF-----NVLASGGGTQDGCIKIWNVQKG 253
NV A+G G D +IW +K
Sbjct: 364 SSLGPEYNVFATGSG--DCKARIWKYKKI 390
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 44/264 (16%), Positives = 84/264 (31%), Gaps = 75/264 (28%)
Query: 119 SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV------RVSNNVTSRINAH 172
H K + + + + + ++ + + R + + H
Sbjct: 5 LVPYNQRANHSKPIPPFLLDL-DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDH 63
Query: 173 TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232
T+ VC +K+SN+G LA+G + V+ +S + R D AA K +
Sbjct: 64 TSVVCCVKFSNDGEYLATGCNKT-TQVYR---VSDGSLVARLSDDSAANKDPENLNTSSS 119
Query: 233 V-----------------LASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275
LA+G D I+IW+++ +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAE--DRLIRIWDIENRKIVM------------------ 159
Query: 276 EILSGHG-------FSSSGDGQKL---------CLWKYPHMTKWGELQHQ---TSRILEL 316
IL GH + G KL +W + G+ + +
Sbjct: 160 -ILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWD----LRTGQCSLTLSIEDGVTTV 212
Query: 317 SQSP-DGLTVVSAAADETLRFWEA 339
+ SP DG + + + D +R W++
Sbjct: 213 AVSPGDGKYIAAGSLDRAVRVWDS 236
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 61/298 (20%), Positives = 102/298 (34%), Gaps = 40/298 (13%)
Query: 69 LWKQ-----ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LI 122
LWK+ + + + QD L+ L+ W
Sbjct: 55 LWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQR 114
Query: 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182
L GH V T + + +G+ DK I +D + +++ H V LK++
Sbjct: 115 TTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYA 171
Query: 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY-QFNVLASGGGTQ 241
+ G +L SG D V VWD + C H F H + V+ L Y + +G
Sbjct: 172 H-GGILVSGSTDRTVRVWD---IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR-- 225
Query: 242 DGCIKIWNVQKGTCI----HSVDTKAQICGLEWNRHHKEILSGHG---FSSSGDGQKL-- 292
D + +W + K + + D E N + +L GH + SG G +
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 285
Query: 293 -------CLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+W + + T RI + +SA+ D T+R W+
Sbjct: 286 GSYDNTLIVWD----VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 54/294 (18%), Positives = 97/294 (32%), Gaps = 83/294 (28%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
++ N + L G D ++ ++ L G +++WD + EGH
Sbjct: 146 VYDSINKKFLLQLS--GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGH 202
Query: 129 DKRVATASWNHW-NGHILTSGSQDKSI-------------INHDVRVSNNVTSRINA--- 171
+ V + N + +GS+D ++ + +
Sbjct: 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262
Query: 172 ------HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225
H A V + S GN++ SG DN + VWD ++ KCL+ H + +
Sbjct: 263 VGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWD---VAQMKCLYILSGHTDRIYSTI 317
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285
+ + S D I+IW+++ G ++ L GH
Sbjct: 318 YDH-ERKRCISASM--DTTIRIWDLENGELMY-------------------TLQGH---- 351
Query: 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
T+ + L S +VSAAAD ++R W+A
Sbjct: 352 ------------------------TALVGLLRLSDK--FLVSAAADGSIRGWDA 379
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 5e-18
Identities = 51/283 (18%), Positives = 89/283 (31%), Gaps = 69/283 (24%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAET-----------------------SKLIRNLEGH 128
I ++ K + G + L +W + L GH
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
V T S + G+I+ SGS D ++I DV ++ HT + + +E
Sbjct: 270 MASVRTVSGH---GNIVVSGSYDNTLIVWDVA-QMKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
S D + +WD + + + ++ + H A V L L S DG I+ W
Sbjct: 326 ISASMDTTIRIWD---LENGELMYTLQGHTALVGLLRLSD---KFLVSAAA--DGSIRGW 377
Query: 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL--------CLWKYPHM 300
+ + S HH + + F L ++
Sbjct: 378 DANDYSRKFS-------------YHHTNLSAITTFYV--SDNILVSGSENQFNIYN---- 418
Query: 301 TKWGELQHQT-----SRILELSQSPDGLTVVSAAADETLRFWE 338
+ G+L H +I ++ L V+A + F E
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFKGKTL--VAAVEKDGQSFLE 459
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 8e-13
Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 54/223 (24%)
Query: 139 HWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198
+WN I S S K ++ + VS + +N ++ + L+ + ++
Sbjct: 44 NWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILK 103
Query: 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS 258
W + K R H +V + + +G D I++++ +
Sbjct: 104 NWYNPK--FVPQRTTLRGHMTSVITCLQFEDNY--VITGAD--DKMIRVYDSINKKFLLQ 157
Query: 259 VDTKAQICGLEWNRHHKEILSGHG-------FSSSGDGQKL---------CLWKYPHMTK 302
LSGH ++ G L +W K
Sbjct: 158 -------------------LSGHDGGVWALKYA---HGGILVSGSTDRTVRVWD----IK 191
Query: 303 WGE----LQHQTSRILELS--QSPDGLTVVSAAADETLRFWEA 339
G + S + L + + +V+ + D TL W+
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 56/298 (18%), Positives = 90/298 (30%), Gaps = 72/298 (24%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETSKLIR--N 124
++ NG + + G + ++W+ LA K+ +W E +
Sbjct: 39 IFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98
Query: 125 LEGHDKRVATASWN-HWNGHILTSGSQDKSI--INHDVRVSNNVTSRINAHTAEVCGLKW 181
GHD V + W H G IL GS D +I + + V NAHT + W
Sbjct: 99 HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158
Query: 182 S-----------------NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL 224
+ N ASGG DNL+ +W + K + H V+ +
Sbjct: 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV 218
Query: 225 AWCP---YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281
AW P + +AS QDG + IW N ++L
Sbjct: 219 AWAPSIGLPTSTIASCS--QDGRVFIWTCDDA---------------SSNTWSPKLLHKF 261
Query: 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ +S S + + D + W+
Sbjct: 262 ----------------------------NDVVWHVSWSITANILAVSGGDNKVTLWKE 291
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-25
Identities = 49/304 (16%), Positives = 88/304 (28%), Gaps = 74/304 (24%)
Query: 77 VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVAT 134
+ + T +D LA ++++D LI +L GH+ V
Sbjct: 5 INTVD--TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQ 62
Query: 135 ASWNH-WNGHILTSGSQDKSIINHDVRVSNNV-TSRINAHTAEVCGLKWS--NEGNLLAS 190
+W H G+IL S S D+ +I + H + V + W+ + G +LA
Sbjct: 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC 122
Query: 191 GGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP----------------YQFNVL 234
G D + + ++ + H A++W P
Sbjct: 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRF 182
Query: 235 ASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294
ASGG D IK+W ++ L H
Sbjct: 183 ASGGC--DNLIKLWKEEEDGQWKEEQK----------------LEAH------------- 211
Query: 295 WKYPHMTKWGELQHQTSRILELSQSPD----GLTVVSAAADETLRFWEAFGPSGSGDFVS 350
+ + +++ +P T+ S + D + W S +
Sbjct: 212 ---------------SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK 256
Query: 351 HLDG 354
L
Sbjct: 257 LLHK 260
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-25
Identities = 41/303 (13%), Positives = 92/303 (30%), Gaps = 36/303 (11%)
Query: 69 LWKQENG-EVQKLLKV-TGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAET------ 118
++K + +L D +I W+ + +A ++LW+ +
Sbjct: 37 VFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96
Query: 119 ---SKLIRNLEGHDKRVATASW-NHWNGHILTSGSQDKSI------------INHDVRVS 162
+ L + + + G L D +
Sbjct: 97 GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156
Query: 163 NNVTSRINAHTAEVCGLKWS---NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219
++ H L W LA + + K + H++
Sbjct: 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQR-GKDGKLHVAAKLPGHKS 215
Query: 220 AVKALAWCP---YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKE 276
+++++W P + ++A+G +DG I+I+ + + + + ++
Sbjct: 216 LIRSISWAPSIGRWYQLIATGC--KDGRIRIFKITEKLSPLASEESL-TNSNMFDNSADV 272
Query: 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336
+ G S S +K L + E + +S + G + SA D +R
Sbjct: 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332
Query: 337 WEA 339
W+A
Sbjct: 333 WKA 335
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 5e-22
Identities = 40/272 (14%), Positives = 87/272 (31%), Gaps = 42/272 (15%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV--------SNNVTSRINAHTAEV 176
GHD V ++ G + + S D+ I +V + ++ AH + +
Sbjct: 7 DSGHDDLVHDVVYDF-YGRHVATCSSDQHI-----KVFKLDKDTSNWELSDSWRAHDSSI 60
Query: 177 CGLKWS--NEGNLLASGGDDNLVHVWD------HSKMSSSKCLHRFRDHRAAVKALAWCP 228
+ W+ G ++AS D V +W+ L D + ++ ++ + P
Sbjct: 61 VAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 120
Query: 229 YQF-NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWN-RHHKEILSGHGFS-- 284
LA G DG +++++ + + + S +++ L +H + +
Sbjct: 121 AHLGLKLACLGN--DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178
Query: 285 --------SSGDGQKLCLWKYPHMTKW--GELQHQTSRILELSQSPD----GLTVVSAAA 330
S Q + + +L S I +S +P + +
Sbjct: 179 RFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238
Query: 331 DETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
D +R ++ L S
Sbjct: 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSA 270
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 6e-20
Identities = 32/207 (15%), Positives = 62/207 (29%), Gaps = 13/207 (6%)
Query: 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA---KTLAVGYMASKLQLWDAETSK 120
+L W + + +SW + LAV + + + K
Sbjct: 144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK 203
Query: 121 --LIRNLEGHDKRVATASW---NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE 175
+ L GH + + SW ++ +G +D I +
Sbjct: 204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT-EKLSPLASEESLTN 262
Query: 176 VCGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVL 234
S + ++ A G D N + + L DH V +++W +L
Sbjct: 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTIL 321
Query: 235 ASGGGTQDGCIKIWNVQKGTCIHSVDT 261
+S G DG +++W +
Sbjct: 322 SSAGD--DGKVRLWKATYSNEFKCMSV 346
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 12/159 (7%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDA----KTLAVGYMASKLQLWDAETSKLIRN 124
+ ++G++ K+ G SISW+ + +A G +++++
Sbjct: 196 YQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL--SP 253
Query: 125 LEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNVTSRI----NAHTAEVCGL 179
L + + +++ + + G D + + +N+ + + H EV +
Sbjct: 254 LASEESLTNSNMFDNSADVDMDAQGRSDSNTE-EKAELQSNLQVELLSEHDDHNGEVWSV 312
Query: 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR 218
W+ G +L+S GDD V +W + + KC+ +
Sbjct: 313 SWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQQ 351
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-25
Identities = 41/310 (13%), Positives = 93/310 (30%), Gaps = 76/310 (24%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
LW + + L S+ W++D + + + LW+ + ++++ E
Sbjct: 134 LWNKTGALLNVL---NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK 190
Query: 129 D---------------KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT 173
+ W + + G +I + + T ++ H
Sbjct: 191 ETGGSSINAENHSGDGSLGVDVEWVD-DDKFVIPGP-KGAIFVYQIT-EKTPTGKLIGHH 247
Query: 174 AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNV 233
+ L++++ LL S DD + +W + + F H ++ + +W +
Sbjct: 248 GPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNCFYGHSQSIVSASWVGD--DK 302
Query: 234 LASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
+ S DG +++W++++ T + +
Sbjct: 303 VISCSM--DGSVRLWSLKQNTLLA-------------------LSIVD------------ 329
Query: 294 LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF-GPSGSGDFVSHL 352
I S DG A D + ++ S S +
Sbjct: 330 ----------------GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR 373
Query: 353 DGLLSLKVSP 362
DG+L+ P
Sbjct: 374 DGILNPLPIP 383
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 52/330 (15%), Positives = 98/330 (29%), Gaps = 94/330 (28%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWS-QDAKTLAVGYMASKLQLWDAETSK------- 120
+G V K+LK + D S +W+ D LA G S +L +
Sbjct: 28 SSDDLDGFV-KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW 86
Query: 121 -------------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV---SNN 164
L + +V +W+H +G+ + +G ++ + R+ +
Sbjct: 87 KLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGEL-----RLWNKTGA 140
Query: 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD------------HSKMSSSKCLH 212
+ + +N H A + +KW+ +G + S +N+ +W+ SS
Sbjct: 141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200
Query: 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR 272
+ + W + G G I ++ + + T
Sbjct: 201 NHSGDGSLGVDVEWVDD--DKFVIPGP--KGAIFVYQITEKTPTG--------------- 241
Query: 273 HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332
L GH I L + ++SA+ D
Sbjct: 242 ----KLIGH----------------------------HGPISVLEFNDTNKLLLSASDDG 269
Query: 333 TLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
TLR W + F H ++S
Sbjct: 270 TLRIWHGGNGNSQNCFYGHSQSIVSASWVG 299
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 12/194 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+++++ L G + + ++ K L L++W
Sbjct: 229 IFVYQITEKTPTGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH + + +ASW + ++ S S D S+ ++ N + + + + S +G
Sbjct: 287 GHSQSIVSASWVG-DDKVI-SCSMDGSVRLWSLK-QNTLLALSIVDGVPIFAGRISQDGQ 343
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
A D V+V+D + R +R + P + +S D
Sbjct: 344 KYAVAFMDGQVNVYD---LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN--DYIF 398
Query: 246 KI-WNVQKGTCIHS 258
+ WN +
Sbjct: 399 DLSWNCAGNKISVA 412
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 5e-20
Identities = 38/287 (13%), Positives = 74/287 (25%), Gaps = 78/287 (27%)
Query: 69 LWKQENGEVQKLLKV-------------TGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115
LW +G V + ++ +G+ + W D K + G + + ++
Sbjct: 175 LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA-IFVYQ 233
Query: 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV----SNNVTSRINA 171
L GH ++ +N +L S S D ++ R+ + N +
Sbjct: 234 ITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTL-----RIWHGGNGNSQNCFYG 287
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231
H+ + W + + S D V +W + + L + A
Sbjct: 288 HSQSIVSASWVGDDKV-ISCSMDGSVRLWS---LKQNTLLALSIVDGVPIFAGRISQDG- 342
Query: 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQK 291
A DG + +++++K L G+
Sbjct: 343 QKYAVAFM--DGQVNVYDLKKLNSKS------------------RSLYGN---------- 372
Query: 292 LCLWKYPHMTKWGELQHQTSRILELSQSP-DGLTVVSAAADETLRFW 337
IL P S D
Sbjct: 373 ------------------RDGILNPLPIPLYASYQSSQDNDYIFDLS 401
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 26/188 (13%), Positives = 51/188 (27%), Gaps = 36/188 (19%)
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
D N + D + + + + + W P ++LA G + ++
Sbjct: 18 TQEDDTNSIDSSD--DLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEK--NSVARLA 73
Query: 249 NVQKGTCI-HSVDTKAQICGLEWNRHHKEILSGHG-------FSSSGDGQKL-------- 292
+ + I L +S DG +
Sbjct: 74 RIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH--DGNSIVTGVENGE 131
Query: 293 -CLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD 347
LW K G L + + I+ + + DG ++S + W SG
Sbjct: 132 LRLW-----NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV----ISGT 182
Query: 348 FVSHLDGL 355
+ H +
Sbjct: 183 VMQHFELK 190
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 51/288 (17%), Positives = 97/288 (33%), Gaps = 58/288 (20%)
Query: 70 WKQENGEVQKLLKVTGEDDFPTSI-SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
W+ +Q++ + + D + + G + +++WD T + R L GH
Sbjct: 116 WRCGRHSLQRI---HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH 172
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
V ++ ++ +GS D ++ DV + + + + H V L+++ ++
Sbjct: 173 TGSVLCLQYD---ERVIITGSSDSTVRVWDVN-TGEMLNTLIHHCEAVLHLRFN--NGMM 226
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
+ D + VWD + + HRAAV + + + S G D IK+W
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASG--DRTIKVW 281
Query: 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------------FSSSGDGQKLCLW 295
N + L+GH S S D + LW
Sbjct: 282 NTSTCEFVR-------------------TLNGHKRGIACLQYRDRLVVSGSSDN-TIRLW 321
Query: 296 KYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ G + D +VS A D ++ W+
Sbjct: 322 D----IECGACLRVLEGHEELV--RCIRFDNKRIVSGAYDGKIKVWDL 363
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 32/202 (15%)
Query: 69 LWKQENGEVQKLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127
+W + L +V G + + D K + +++W+ T + +R L G
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR----INAHTAEVCGLKWSN 183
H + +A + ++ SGS D +I R+ + + H V +++
Sbjct: 295 HKRGIACLQYR---DRLVVSGSSDNTI-----RLWDIECGACLRVLEGHEELVRCIRFD- 345
Query: 184 EGNLLASGGDDNLVHVWD------HSKMSSSKCLHRFRDHRAAVKALAWCPYQFN--VLA 235
+ SG D + VWD + + CL +H V L F+ +
Sbjct: 346 -NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-----FDEFQIV 399
Query: 236 SGGGTQDGCIKIWNVQKGTCIH 257
S D I IW+
Sbjct: 400 SSS--HDDTILIWDFLNDPAAQ 419
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 42/251 (16%), Positives = 79/251 (31%), Gaps = 63/251 (25%)
Query: 111 LQLWDAETSK---LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167
+ +WD + L R L GH V ++ + S S D++I + +
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTS-TCEFVR 290
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
+N H + L++ L+ SG DN + +WD + CL H V+ + +
Sbjct: 291 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWD---IECGACLRVLEGHEELVRCIRFD 345
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287
+ SG DG IK+W++ + + L H
Sbjct: 346 N---KRIVSGA--YDGKIKVWDLVAALDPRAPAGTLCL----------RTLVEH------ 384
Query: 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA------FG 341
+ R+ D +VS++ D+T+ W+
Sbjct: 385 ----------------------SGRVF--RLQFDEFQIVSSSHDDTILIWDFLNDPAAQA 420
Query: 342 PSGSGDFVSHL 352
++
Sbjct: 421 EPPRSPSRTYT 431
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 44/296 (14%), Positives = 98/296 (33%), Gaps = 38/296 (12%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWS-QDAKTLAVGYMASKLQLWDAETSKL--IRNL 125
LW + +K G T + ++ + M +L D + + L +
Sbjct: 146 LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS 205
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSII--NHDVRVSNNVTSRINAHTAEVCGLKWSN 183
+ + + + + ++ +G ++I N + + H +V + +
Sbjct: 206 DTINIWFCSLDVSA-SSRMVVTGDNVGNVILLN----MDGKELWNLRMHKKKVTHVALNP 260
Query: 184 EG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242
LA+ D V +WD ++ HR V A + P L + Q
Sbjct: 261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTD--QK 317
Query: 243 GCIKIWNVQKGTCI-----HSVDTKAQICGLEWNRHHKEILSGHGFS--------SSGDG 289
I++++ + C H + ++ H + L G + +
Sbjct: 318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377
Query: 290 QKLCLWKYPHMTKWGELQHQ-----TSRILELSQ-SPDGLTVVSAAADETLRFWEA 339
+ + ++ G++ Q +S I L++ +P G T+ S A + W
Sbjct: 378 RTIDVFD----GNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS-AMGYHILIWSQ 428
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 36/276 (13%), Positives = 90/276 (32%), Gaps = 26/276 (9%)
Query: 91 TSISWSQDAKTLAVGY------MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHI 144
SI + L + L ++ ++++ D+R + +W+ +
Sbjct: 75 RSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPST 134
Query: 145 LTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDH 202
+ GS+ I+ + + + + + GLK++ N + + + D
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD- 193
Query: 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT- 261
K + + +L ++ +G G + + N+ G + ++
Sbjct: 194 FKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDN--VGNVILLNM-DGKELWNLRMH 249
Query: 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ---TSRILELSQ 318
K ++ + N L+ ++S D Q + +W + + +
Sbjct: 250 KKKVTHVALNPCCDWFLA----TASVD-QTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDG 354
SPDG +++ +R + A D L
Sbjct: 305 SPDGARLLTTDQKSEIRVYSA----SQWDCPLGLIP 336
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 40/215 (18%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNL 125
+ L + E+ L T ++ + LA + +++WD + +
Sbjct: 233 VILLNMDGKELWNL---RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289
Query: 126 ---EGHDKRVATASWNHWNGHILTSGSQDKSI--------------INHDVRVSNNVTSR 168
H V A ++ +G L + Q I I H R ++T
Sbjct: 290 LYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI 348
Query: 169 INA--HTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHR-FRDHRAAVKAL 224
A + + + N + + + V+D +S K + + + + +
Sbjct: 349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD---GNSGKMMCQLYDPESSGI--- 402
Query: 225 AWCPYQFN----VLASGGGTQDGCIKIWNVQKGTC 255
+FN LAS I IW+ Q+
Sbjct: 403 -SSLNEFNPMGDTLASAM---GYHILIWSQQEART 433
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-24
Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 66/287 (22%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--IRNLE 126
LW G K G S+++S D + + +++LW+ E
Sbjct: 102 LWDLRTGTTYKRFV--GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159
Query: 127 GHDKRV---------ATASWNHWNGHILTSGSQDKSIINHDVRV---SNNVTSRINAHTA 174
H V +A+ S D + +V + + AH +
Sbjct: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL-----KVWNTNFQIRYTFKAHES 214
Query: 175 EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP--YQFN 232
V L S G +A+GG D + +WD + + R D + + +A+ P
Sbjct: 215 NVNHLSISPNGKYIATGGKDKKLLIWD---ILNLTYPQREFDAGSTINQIAFNPKLQW-- 269
Query: 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292
+A G D +KI+N+ + +A+ E G
Sbjct: 270 -VAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITK------AEGQKGK----------- 308
Query: 293 CLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ L+ + G + + D +R +
Sbjct: 309 -----------------NPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 3e-20
Identities = 51/283 (18%), Positives = 90/283 (31%), Gaps = 55/283 (19%)
Query: 111 LQLWDAETSKLIRNLEGHDKRV---ATASWNHW--NGHILTSGSQDKSII------NHDV 159
L + + L EGH V + +L SGS+DK+++
Sbjct: 7 LDIQVVKRGIL----EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN 62
Query: 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219
+ H V L S E S D + +WD + + RF H++
Sbjct: 63 GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD---LRTGTTYKRFVGHQS 119
Query: 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT------------CIHSV----DTKA 263
V ++A+ P + S G + IK+WN+ + V K+
Sbjct: 120 EVYSVAFSP-DNRQILSAG--AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS 176
Query: 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ----HQTSRILELSQS 319
+ + S D +L +W T + H S + LS S
Sbjct: 177 ANKVQPFAPY---FASV-----GWD-GRLKVWN----TNFQIRYTFKAH-ESNVNHLSIS 222
Query: 320 PDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
P+G + + D+ L W+ + + + +P
Sbjct: 223 PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP 265
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 9e-14
Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 33/208 (15%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKL----------QLWDAET 118
LW + D+ + + +S K+ + ++W+
Sbjct: 144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF 203
Query: 119 SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG 178
++ + H+ V S + NG + +G +DK ++ D+ + R + +
Sbjct: 204 -QIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDIL-NLTYPQREFDAGSTINQ 260
Query: 179 LKWSNEGNLLASGGDDNLVHVWD----------HSKMSSSKCLHRFRDHRAAVKALAWCP 228
+ ++ + +A G D V +++ + + +LAW
Sbjct: 261 IAFNPKLQWVAVGTDQG-VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319
Query: 229 ---YQFNVLASGGGTQDGCIKIWNVQKG 253
L +G DG I+ ++ +
Sbjct: 320 LGKK----LFAGFT--DGVIRTFSFETS 341
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 36/227 (15%), Positives = 65/227 (28%), Gaps = 69/227 (30%)
Query: 149 SQDKSIINHDVRVSNNVTSRINAHTAEVC------GLKWSNEGNLLASGGDDNLVHVWD- 201
+ + S+ + + H+ V K + + +L SG D V +W
Sbjct: 2 ADNSSL-----DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL 56
Query: 202 ---HSKMSSSKCLHRFRDHRAAVKALAWCPY-QFNVLASGGGTQDGCIKIWNVQKGTCIH 257
H V LA F S D +++W+++ GT
Sbjct: 57 YEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF--AISSSW--DKTLRLWDLRTGTTYK 112
Query: 258 SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317
GH S + ++
Sbjct: 113 -------------------RFVGH----------------------------QSEVYSVA 125
Query: 318 QSPDGLTVVSAAADETLRFWEAFG--PSGSGDFVSHLDGLLSLKVSP 362
SPD ++SA A+ ++ W G S + +H D + ++ SP
Sbjct: 126 FSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 48/281 (17%), Positives = 89/281 (31%), Gaps = 74/281 (26%)
Query: 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL 145
+++F + Q + + W L GH V ++ ++
Sbjct: 76 KEEFTSGGPLGQK-RDP---------KEWIPRP-PEKYALSGHRSPVTRVIFHP-VFSVM 123
Query: 146 TSGSQDKSIINHDVRVSNNVTSR----INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201
S S+D +I +V + T + HT V + + + G LLAS D + +WD
Sbjct: 124 VSASEDATI-----KVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178
Query: 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261
+C+ H V +++ P + + S D IK+W VQ G C+
Sbjct: 179 ---FQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASR--DKTIKMWEVQTGYCVK---- 228
Query: 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321
+GH + + + D
Sbjct: 229 ---------------TFTGH----------------------------REWVRMVRPNQD 245
Query: 322 GLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
G + S + D+T+R W + H + + +P
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 41/292 (14%), Positives = 86/292 (29%), Gaps = 79/292 (27%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
LW + E + + G D +S+S + + +++W+ +T ++ GH
Sbjct: 176 LWDFQGFECIRTMH--GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Query: 129 D------------KRVATASWNH----WNGHILTSGSQDKSIINHD-----VRVSNNVTS 167
+A+ S + W + + + H + + +
Sbjct: 234 REWVRMVRPNQDGTLIASCSNDQTVRVWV---VATKECKAELREHRHVVECISWAPESSY 290
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
+ K G L SG D + +WD +S+ CL H V+ + +
Sbjct: 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD---VSTGMCLMTLVGHDNWVRGVLFH 347
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287
+ S D +++W+ + C+ L+ H
Sbjct: 348 S-GGKFILSCAD--DKTLRVWDYKNKRCMK-------------------TLNAH------ 379
Query: 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ L VV+ + D+T++ WE
Sbjct: 380 ----------------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 4e-21
Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 36/206 (17%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W+ + G K G ++ + +QD +A +++W T + L H
Sbjct: 218 MWEVQTGYCVKTFT--GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275
Query: 129 DKRV-------------------ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR- 168
V + + G L SGS+DK+I ++ + T
Sbjct: 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI-----KMWDVSTGMC 330
Query: 169 ---INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225
+ H V G+ + + G + S DD + VWD + +C+ H V +L
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD---YKNKRCMKTLNAHEHFVTSLD 387
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQ 251
+ + +G D +K+W +
Sbjct: 388 FHKTA-PYVVTGS--VDQTVKVWECR 410
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 2e-23
Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 39/251 (15%)
Query: 113 LWDAETSKL---IRNLEGHDKRVATASWNHWNGHILTSGSQDKSI------INHDVRVSN 163
L +T ++ + + GH V +W N +++ SGS+D ++ V
Sbjct: 62 LPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121
Query: 164 NVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--HRAA 220
+ HT V + W N+L S G DN++ VWD + + + H
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD---VGTGAAVLTLGPDVHPDT 178
Query: 221 VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280
+ ++ W ++ + +D +++ +KGT + D E R +
Sbjct: 179 IYSVDWSRDG-ALICT--SCRDKRVRVIEPRKGTVVAEKDR-----PHEGTRPVHAVFVS 230
Query: 281 H------GFSSSGDGQKLCLWKYPHMTKWGELQH-----QTSRILELSQSPDG-LTVVSA 328
GFS + Q + LW E +S +L PD + +
Sbjct: 231 EGKILTTGFSRMSERQ-VALWD---TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286
Query: 329 AADETLRFWEA 339
D ++R++E
Sbjct: 287 KGDSSIRYFEI 297
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-22
Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 25/263 (9%)
Query: 91 TSISWS-QDAKTLAVGYMASKLQLWDAETSKLIRN-------LEGHDKRVATASWNHWNG 142
I+W + +A G + +W+ L+ LEGH KRV +W+
Sbjct: 85 LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ 144
Query: 143 HILTSGSQDKSIINHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201
++L S D I+ DV V T + H + + WS +G L+ + D V V +
Sbjct: 145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
Query: 202 HSKMSSSKCLHRFRDHRAAVKA--LAWCPYQFNVLASGG-GTQDGCIKIWNVQKGTCI-- 256
+ + + + +L +G + + +W+ +
Sbjct: 205 ---PRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLS 260
Query: 257 -HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRIL 314
+DT + + ++ + GD + ++ + L +S+
Sbjct: 261 LQELDTSSGVLLPFFDPDTNIVYL----CGKGDSS-IRYFEITSEAPFLHYLSMFSSKES 315
Query: 315 ELSQSPDGLTVVSAAADETLRFW 337
+ + E RF+
Sbjct: 316 QRGMGYMPKRGLEVNKCEIARFY 338
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 7e-16
Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 21/206 (10%)
Query: 168 RINAHTAEVCGLKWSNEG---NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL 224
R++ T + + + ASGG LV + K + H A V +
Sbjct: 29 RVSQTTWDSGFCAVNPKFMALICEASGGGAFLV-LPLGKTGRVDKNVPLVCGHTAPVLDI 87
Query: 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ--------ICGLEWNRHHKE 276
AWCP+ NV+ASG +D + +W + G + + + + W+ +
Sbjct: 88 AWCPHNDNVIASGS--EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN 145
Query: 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ--TSRILELSQSPDGLTVVSAAADETL 334
+L S+ D + +W L I + S DG + ++ D+ +
Sbjct: 146 VL----LSAGCDN-VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRV 200
Query: 335 RFWEAFGPSGSGDFVSHLDGLLSLKV 360
R E + + +G +
Sbjct: 201 RVIEPRKGTVVAEKDRPHEGTRPVHA 226
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 5e-15
Identities = 22/195 (11%), Positives = 68/195 (34%), Gaps = 13/195 (6%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
+W G L D S+ WS+D + ++++ + ++ +
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP 217
Query: 129 DK--RVATASWNHWNGHILTSG---SQDKSIINHDVR-VSNNVTSRINAHTAEVCGLKWS 182
+ R A + G ILT+G ++ + D + + ++ + ++ V +
Sbjct: 218 HEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD 276
Query: 183 NEGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241
+ N + G D+ + ++ + + + + + + + P + + +
Sbjct: 277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KRGLEVNKCEI- 334
Query: 242 DGCIKIWNVQKGTCI 256
+ + + + C
Sbjct: 335 ---ARFYKLHERKCE 346
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 54/281 (19%), Positives = 95/281 (33%), Gaps = 69/281 (24%)
Query: 69 LWKQENGEV---QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125
LWK + ++TG F + S D + G +L+LWD R
Sbjct: 409 LWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF 468
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSII--NHDVRVSNNVTSRINAHTAEVCGLKWSN 183
GH K V + +++ + + S S+D++I N ++ H V +++S
Sbjct: 469 VGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527
Query: 184 EGN--LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGG 238
+ S D V VW+ +S+ K H V +A P ASGG
Sbjct: 528 NTLQPTIVSASWDKTVKVWN---LSNCKLRSTLAGHTGYVSTVAVSPDGSL----CASGG 580
Query: 239 GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298
DG + +W++ +G ++S L +
Sbjct: 581 K--DGVVLLWDLAEGKKLYS-------------------LEAN----------------- 602
Query: 299 HMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
S I L SP+ + +A + ++ W+
Sbjct: 603 ------------SVIHALCFSPNRYWLCAAT-EHGIKIWDL 630
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-22
Identities = 54/296 (18%), Positives = 97/296 (32%), Gaps = 51/296 (17%)
Query: 69 LWKQENGEVQKLLK-VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127
+ + GE+ + ++ + + + V + Q A L +
Sbjct: 321 MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRA 380
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA----HTAEVCGLKWSN 183
H V + N I+ S S+DKSII + + H+ V + S+
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 184 EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243
+G SG D + +WD +++ RF H V ++A+ + S D
Sbjct: 441 DGQFALSGSWDGELRLWD---LAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASR--DR 494
Query: 244 CIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------FSSSGDGQKL---- 292
IK+WN G C +++ E GH FS + +
Sbjct: 495 TIKLWNT-LGECKYTI---------------SEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538
Query: 293 -----CLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+W +L+ T + ++ SPDG S D + W+
Sbjct: 539 WDKTVKVWN----LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 5e-22
Identities = 55/281 (19%), Positives = 100/281 (35%), Gaps = 57/281 (20%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIRNL 125
LW G + G S+++S D + + ++LW+ +
Sbjct: 456 LWDLAAGVSTRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 126 EGHDKRVATASWNHWNG--HILTSGSQDKSIINHDVRVSNNVTSRINA----HTAEVCGL 179
EGH V+ ++ N + S S DK++ +V N ++ + HT V +
Sbjct: 514 EGHRDWVSCVRFSP-NTLQPTIVSASWDKTV-----KVWNLSNCKLRSTLAGHTGYVSTV 567
Query: 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP--YQFNVLASG 237
S +G+L ASGG D +V +WD ++ K L+ + + + AL + P Y L +
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWD---LAEGKKLYSLEAN-SVIHALCFSPNRYW---LCAA 620
Query: 238 GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297
+ IKIW+++ + + L + +
Sbjct: 621 T---EHGIKIWDLESKSIVED-------------------LKVDLKAEAEKADNSGPAAT 658
Query: 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
+ L+ S DG T+ S D +R W
Sbjct: 659 KRKVIY---------CTSLNWSADGSTLFSGYTDGVIRVWG 690
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 1e-19
Identities = 50/307 (16%), Positives = 92/307 (29%), Gaps = 67/307 (21%)
Query: 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125
E E + + +++ + LA + +A+ +++ N+
Sbjct: 278 EFLENYLLTDEGLEAVNKDKP---LGAVALKSYEEELAKDPRI-AATMENAQKGEIMPNI 333
Query: 126 EGHDK---RVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182
V TA N +G + + N + T R AHT V +
Sbjct: 334 PQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMR--AHTDMVTAIATP 391
Query: 183 -NEGNLLASGGDDNLVHVWD--HSKMSSSKCLHRFRDHRAAVKALAWCPY-QFNVLASGG 238
+ +++ S D + +W + R H V+ + QF SG
Sbjct: 392 IDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF--ALSGS 449
Query: 239 GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298
DG +++W++ G GH
Sbjct: 450 W--DGELRLWDLAAGVSTRR-------------------FVGH----------------- 471
Query: 299 HMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG---SGDFVSHLDGL 355
T +L ++ S D +VSA+ D T++ W G S H D +
Sbjct: 472 -----------TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520
Query: 356 LSLKVSP 362
++ SP
Sbjct: 521 SCVRFSP 527
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 35/201 (17%), Positives = 76/201 (37%), Gaps = 26/201 (12%)
Query: 69 LWKQENGEVQKLLK-VTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKLIRNL 125
LW + + G D+ + + +S + T+ +++W+ KL L
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185
GH V+T + + +G + SG +D ++ D+ + S + A++ + L +S
Sbjct: 558 AGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYS-LEANS-VIHALCFSPNR 614
Query: 186 NLLASGGDDNLVHVWD----------------HSKMSSSKCLHRFRDHRAAVKALAWCPY 229
L + + + +WD ++ + + + +L W
Sbjct: 615 YWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA- 672
Query: 230 QFNVLASGGGTQDGCIKIWNV 250
+ L SG DG I++W +
Sbjct: 673 DGSTLFSGYT--DGVIRVWGI 691
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 98.3 bits (244), Expect = 3e-23
Identities = 37/270 (13%), Positives = 85/270 (31%), Gaps = 24/270 (8%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-G 127
L + + P IS L + Y +++ + D++T+K++R +E
Sbjct: 65 LKDSKTITTITTPNPRTGGEHPAIISRG-PCNRLLLLYPGNQITILDSKTNKVLREIEVD 123
Query: 128 HDKRVATASW-NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
+ N N +I + E +
Sbjct: 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL 183
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF--RDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
LLA D ++ V++ +SS D A +K + + + ++ D
Sbjct: 184 LLALYSPDGILDVYN---LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC----DQT 236
Query: 245 IKIWNVQKGTC------IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298
+ ++++K + K + + K +++ S + L ++K+
Sbjct: 237 VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY-----SNESNSLTIYKFD 291
Query: 299 HMTK-WGELQHQTSRILELSQSPDGLTVVS 327
TK W + + + + + VV
Sbjct: 292 KKTKNWTKDEESALCLQSDTADFTDMDVVC 321
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 3e-22
Identities = 35/312 (11%), Positives = 85/312 (27%), Gaps = 61/312 (19%)
Query: 69 LW---KQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK----- 120
+W + GEV T I+ + AV ++ + +
Sbjct: 90 IWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV 149
Query: 121 -----------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS-R 168
++N ++ V ++ + +L + + +I D+R +
Sbjct: 150 KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209
Query: 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-HRAAVKALAWC 227
+ V + E +L G ++ +WD + + + + A + + C
Sbjct: 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWD---IRFNVLIRSWSFGDHAPITHVEVC 266
Query: 228 PY---QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFS 284
+ ++ G + + IWN KG C +
Sbjct: 267 QFYGKNSVIVVGG--SSKTFLTIWNFVKGHCQY-------------------AFINSDEQ 305
Query: 285 S-----SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ L + + L + +++ A ++ +
Sbjct: 306 PSMEHFLPIEKGLEELNFCGIRSLNALST--------ISVSNDKILLTDEATSSIVMFSL 357
Query: 340 FGPSGSGDFVSH 351
S S +S
Sbjct: 358 NELSSSKAVISP 369
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 4e-19
Identities = 28/303 (9%), Positives = 86/303 (28%), Gaps = 49/303 (16%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKT-LAVGYMASKLQLWDAETSKLIRNLEG 127
E L + ++ + K+ L S++ ++D T + ++ +E
Sbjct: 151 FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210
Query: 128 --HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE- 184
V++ + +L G+ I D+R + + S A + ++
Sbjct: 211 SPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269
Query: 185 ---GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF---------- 231
++ G + +W+ C + F + + P +
Sbjct: 270 GKNSVIVVGGSSKTFLTIWN---FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326
Query: 232 --------------NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI 277
+L + I ++++ + + +V + ++
Sbjct: 327 RSLNALSTISVSNDKILLTDE--ATSSIVMFSLNELSSSKAVIS---------PSRFSDV 375
Query: 278 LSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL--SQSPDGLTVVSAAADETLR 335
+++ L K + + I + + + +V+ +
Sbjct: 376 FIPTQVTANLT-MLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIG 434
Query: 336 FWE 338
++
Sbjct: 435 IFQ 437
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 5e-19
Identities = 33/258 (12%), Positives = 74/258 (28%), Gaps = 46/258 (17%)
Query: 114 WDAETSKLIRNL-EGHDKRVATASWNHWNGHILTSGSQDKSI----INHDVRVSNNVTSR 168
KLI L E + +++ + L +GS I + + +S
Sbjct: 47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106
Query: 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD-------------HSKMSSSKCLHRFR 215
++ V + + A D + V + + L F
Sbjct: 107 TYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFG 166
Query: 216 DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275
+ AV+ A+ + ++L + T + I++++ + +E + H
Sbjct: 167 KNEYAVRMRAFVNEEKSLLVA--LTNLSRVIIFDIRTLERLQI---------IENSPRHG 215
Query: 276 EILSGHGFSSSGDGQKL---------CLW-----KYPHMTKWGELQHQTSRILELSQSPD 321
+ S + L +W +G+ T + +
Sbjct: 216 AVSS---ICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN 272
Query: 322 GLTVVSAAADETLRFWEA 339
+ VV ++ L W
Sbjct: 273 SVIVVGGSSKTFLTIWNF 290
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 3e-22
Identities = 32/276 (11%), Positives = 79/276 (28%), Gaps = 29/276 (10%)
Query: 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG---HDKRVATASWNHWNGH 143
D+ + I L + L ++ + +L + + ++
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 144 ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW-SNEGNLLASGGDDNLVHVWD- 201
+ G+ I+ D+ + + + A + + + L + D L+ V D
Sbjct: 71 QIYVGTVQGEILKVDLI-GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129
Query: 202 HSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260
+ + + VK + + L G + ++ + + +
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG--MNNSQVQWFRLPLCEDDN--- 184
Query: 261 TKAQICGLEWNRHHKEILSGHG---FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317
+ GL++ +L SS DG+ + + + R L+
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 318 Q--------------SPDGLTVVSAAADETLRFWEA 339
SP + +A +D + W
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 7e-20
Identities = 31/279 (11%), Positives = 83/279 (29%), Gaps = 20/279 (7%)
Query: 67 LYLWK-QENGEVQKLLKVTGEDDFPTSISWSQDAKT-LAVGYMASKLQLWDAETSKLIRN 124
L ++K + LL+ ++ + + VG + ++ D S +
Sbjct: 35 LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA 94
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGLKW 181
L ++ + + L + S D I D R + + N++ +V +
Sbjct: 95 LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF 154
Query: 182 S--NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239
+ + L G +++ V + + ++ +A P + A
Sbjct: 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS- 213
Query: 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS----------GHGFSSSGDG 289
DG + + ++ + N + ++G
Sbjct: 214 -IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272
Query: 290 QKLCLWKYPHMTKWGEL-QHQTSRILELSQSPDGLTVVS 327
+ W K + +++++ S + L + +
Sbjct: 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 6e-13
Identities = 15/185 (8%), Positives = 43/185 (23%), Gaps = 48/185 (25%)
Query: 170 NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY 229
A + +K +LL D + V+ + + L + ++ + +
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 230 QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289
+ G G I ++ ++ +++ L
Sbjct: 68 TDLQIYVGTV--QGEILKVDLIGSPSFQAL------------TNNEANLGICRIC----- 108
Query: 290 QKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349
+++A+ D + + V
Sbjct: 109 -----------------------------KYGDDKLIAASWDGLIEVIDPRNYGDGVIAV 139
Query: 350 SHLDG 354
+L+
Sbjct: 140 KNLNS 144
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-22
Identities = 51/293 (17%), Positives = 87/293 (29%), Gaps = 66/293 (22%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETSKL--IRN 124
+++ E + + +TG + + W+ LA K+ +W E + I
Sbjct: 37 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96
Query: 125 LEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRI-NAHTAEVCGLKWS 182
H V + W H G +L S D + + + + + I +AH V W+
Sbjct: 97 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156
Query: 183 -------------NEGNLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCP 228
E +GG DNLV +W ++ + + H V+ +AW P
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 229 YQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286
+ LAS QD IW K +L F
Sbjct: 217 TVLLRSYLASVS--QDRTCIIWTQDNEQ----------------GPWKKTLLKEEKFPDV 258
Query: 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ S S G + + D + W+
Sbjct: 259 --------------------------LWRASWSLSGNVLALSGGDNKVTLWKE 285
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 9e-20
Identities = 52/310 (16%), Positives = 93/310 (30%), Gaps = 56/310 (18%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETSKLIRN-- 124
+WK+ENG ++ S+ W+ L V K+ + + + +
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 125 LEGHDKRVATASWN------------HWNGHILTSGSQDKSI----INHDVRVSNNVTSR 168
++ H V +ASW +G D + N D + + + S
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLEST 201
Query: 169 INAHTAEVCGLKWS---NEGNLLASGGDDNLVHVWDHSKMSSS--KCLHRFRDHRAAVKA 223
+ H+ V + WS + LAS D +W K L + +
Sbjct: 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261
Query: 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH-- 281
+W NVLA GG D + +W + H
Sbjct: 262 ASWSL-SGNVLALSGG--DNKVTLWKEN------------------LEGKWEPAGEVHQG 300
Query: 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA-------AADETL 334
G S G G + P + L + + ++ ++ +A + L
Sbjct: 301 GGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKFSTGSML 360
Query: 335 RFWEAFGPSG 344
+ G SG
Sbjct: 361 LTKDIVGKSG 370
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 9e-14
Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 52/217 (23%)
Query: 170 NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY 229
NAH + G LA+ D + +++ + + K + H V + W
Sbjct: 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFE-VEGETHKLIDTLTGHEGPVWRVDWAHP 66
Query: 230 QF-NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG------ 282
+F +LAS DG + IW + G + + H
Sbjct: 67 KFGTILASCSY--DGKVLIWKEENGRWS-----------------QIAVHAVHSASVNSV 107
Query: 283 -FSSSGDGQKL---------CLWKYPHMTKWGELQ---------------HQTSRILELS 317
++ G L + ++ + E +
Sbjct: 108 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 167
Query: 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDG 354
+ + V+ AD ++ W+ + + S L+G
Sbjct: 168 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 4e-22
Identities = 40/292 (13%), Positives = 88/292 (30%), Gaps = 22/292 (7%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ W+ ++ + WS D + ++WD +++ I+ +
Sbjct: 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IA 124
Query: 127 GHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185
HD V T W N + +GS DK++ D R SN + + C
Sbjct: 125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV-LQLPERCYCADVIYPMA 183
Query: 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQD 242
++A+ +V+ + S+ + + +A + A G +
Sbjct: 184 -VVATAERGLIVYQLE---NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI--E 237
Query: 243 GCIKIWNVQKGTCIHSVDT----KAQICGLEWNRHHKEILS------GHGFSSSGDGQKL 292
G + I + T ++ + + ++ G +
Sbjct: 238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF 297
Query: 293 CLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344
W TK + I + +G A++ + + E + P
Sbjct: 298 SFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 32/261 (12%), Positives = 81/261 (31%), Gaps = 37/261 (14%)
Query: 91 TSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASW--NHWNGHILTS 147
T+ + ++ + + D E D + S+ G+ L +
Sbjct: 6 TTSGFGTSGTSMFGSATTDNHNPMKDIEV------TSSPDDSIGCLSFSPPTLPGNFLIA 59
Query: 148 GSQDKSIINHDVRVSNNVTSR-INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206
GS + +V+ S + HT V + WS++G+ + + D +WD +S
Sbjct: 60 GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD---LS 116
Query: 207 SSKCLHRFRDHRAAVKALAWCPY-QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI 265
S++ + + H A VK + W ++ + +G D +K W+ + + +
Sbjct: 117 SNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSW--DKTLKFWDTRSSNPMMVL------ 167
Query: 266 CGLEWNRHHKEI----LSGHGFSSSGDGQK-LCLWKYPHMTKWGELQHQTSRILELSQSP 320
+ + ++ + + + + ++
Sbjct: 168 -----QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK 222
Query: 321 DGLT----VVSAAADETLRFW 337
D + + +
Sbjct: 223 DKQNKPTGFALGSIEGRVAIH 243
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 29/202 (14%), Positives = 62/202 (30%), Gaps = 64/202 (31%)
Query: 143 HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS---NEGNLLASGGDDNLVHV 199
+ S + D D+ V++ + + L +S GN L +G N V
Sbjct: 16 SMFGSATTDNHNPMKDIEVTS-------SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRC 68
Query: 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259
W+ + S + H V + W + + + D K+W++ I
Sbjct: 69 WE-VQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASC--DKTAKMWDLSSNQAIQ-- 122
Query: 260 DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI--LELS 317
++ H + + +
Sbjct: 123 ------------------IAQH----------------------------DAPVKTIHWI 136
Query: 318 QSPDGLTVVSAAADETLRFWEA 339
++P+ V++ + D+TL+FW+
Sbjct: 137 KAPNYSCVMTGSWDKTLKFWDT 158
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 23/193 (11%), Positives = 48/193 (24%), Gaps = 33/193 (17%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+Y + + E +++ + ++ +D + G+
Sbjct: 194 VYQLENQPSEFRRIE--SPLKHQHRCVAIFKDKQNKPTGFALG----------------- 234
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
+ RVA N + + H +N V G+ +
Sbjct: 235 SIEGRVAIHYINP-----PNPAKDNFTFKCHRSNGTNTSAP---QDIYAVNGIAFHPVHG 286
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246
LA+ G D WD + L + A + N+ A K
Sbjct: 287 TLATVGSDGRFSFWD---KDARTKLKTSEQLDQPISACCFNH-NGNIFAYASS--YDWSK 340
Query: 247 IWNVQKGTCIHSV 259
+ +
Sbjct: 341 GHEFYNPQKKNYI 353
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 4e-22
Identities = 50/293 (17%), Positives = 87/293 (29%), Gaps = 66/293 (22%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETSKL--IRN 124
+++ E + + +TG + + W+ LA K+ +W E + I
Sbjct: 35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94
Query: 125 LEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRI-NAHTAEVCGLKWS 182
H V + W H G +L S D + + + + + I +AH V W+
Sbjct: 95 HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154
Query: 183 -------------NEGNLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCP 228
E +GG DNLV +W ++ + + H V+ +AW P
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 229 --YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286
+ +AS QD IW K +L F
Sbjct: 215 TVLLRSYMASVS--QDRTCIIWTQDNEQ----------------GPWKKTLLKEEKF--- 253
Query: 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ S S G + + D + W+
Sbjct: 254 -----------------------PDVLWRASWSLSGNVLALSGGDNKVTLWKE 283
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-14
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 23/166 (13%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWS-------------QDAKTLAVGYMASKLQLWD 115
+ + + + + S SW+ ++++ G + +++W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 116 AETS----KLIRNLEGHDKRVATASW--NHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169
+ L LEGH V +W + S SQD++ I +
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT 246
Query: 170 ----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL 211
+ WS GN+LA G DN V +W + +
Sbjct: 247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 52/215 (24%)
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231
H + G +A+ D + +++ + + K + H V + W +F
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFE-VEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 232 -NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-------F 283
+LAS DG + IW + G + + H +
Sbjct: 67 GTILASCSY--DGKVMIWKEENGRWS-----------------QIAVHAVHSASVNSVQW 107
Query: 284 SSSGDGQKL---------CLWKYPHMTKWGE--LQ-------------HQTSRILELSQS 319
+ G L + ++ + E + +
Sbjct: 108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167
Query: 320 PDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDG 354
+ V+ AD ++ W+ + + S L+G
Sbjct: 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 5e-21
Identities = 41/275 (14%), Positives = 86/275 (31%), Gaps = 65/275 (23%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD---------------KRVATA 135
+ S+S D + ++ + L +++ H R+
Sbjct: 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144
Query: 136 SWNH----WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG 191
W H S ++ + + S G L+A+G
Sbjct: 145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG 203
Query: 192 GDDNLVHVWDHSKMSSSKCLHRFRD------HRAAVKALAWCPYQFNVLASGGGTQ-DGC 244
++ V + + +S+ + L+ F + +++++ + P Q ++LA + GC
Sbjct: 204 FNNGTVQISE---LSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGC 259
Query: 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304
I ++ + G I S+ + H
Sbjct: 260 ITLYETEFGERIGSLSVPT------HSSQASLGEFAH----------------------- 290
Query: 305 ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+S ++ LS + G T+ SA D LRFW+
Sbjct: 291 -----SSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 3e-15
Identities = 36/323 (11%), Positives = 91/323 (28%), Gaps = 88/323 (27%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDA---KTLAVGYMASKLQLWDAETS------ 119
+ ++ + +K + S D L + +W
Sbjct: 107 VIFEKLDLLDSDMK--KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164
Query: 120 ------------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167
+ + + + + G ++ +G + ++ ++S T
Sbjct: 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTV-----QISELSTL 217
Query: 168 R----------INAHTAEVCGLKWSNEGNLLASGGDDN---LVHVWDHSKMSSSKCLHRF 214
R + ++ + +K+S +G+LLA D N + +++ + +
Sbjct: 218 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE---TEFGERIGSL 274
Query: 215 RD-------------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI----- 256
H + V +L++ L S G DG ++ W+V+ I
Sbjct: 275 SVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGW--DGKLRFWDVKTKERITTLNM 331
Query: 257 HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL 316
H D + + L + H + W+
Sbjct: 332 HCDDIEIEEDILAVDEHGDSLAEP---GVFDVKFLKKGWR------------------SG 370
Query: 317 SQSPDGLTVVSAAADETLRFWEA 339
+ ++ D ++R++
Sbjct: 371 MGADLNESLCCVCLDRSIRWFRE 393
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 29/270 (10%), Positives = 62/270 (22%), Gaps = 70/270 (25%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK---- 180
+ HD + S + S S D + D ++ +N + +++ V
Sbjct: 12 GKAHDADIF--SVS-ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 68
Query: 181 --------------------WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA 220
+S + +D V + H
Sbjct: 69 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFW 125
Query: 221 VKALAWCPYQFN--VLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEIL 278
+ L + G IW + T LE + E
Sbjct: 126 ALKWGASNDRLLSHRLVATDV--KGTTYIWKFHPFADESNSLTLNWSPTLEL-QGTVESP 182
Query: 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
+ + S G + + + T++ E
Sbjct: 183 MTP----------------------------SQFATSVDISERG-LIATGFNNGTVQISE 213
Query: 339 A------FGPSGSGDFVSHLDGLLSLKVSP 362
+ +++ + + S+K SP
Sbjct: 214 LSTLRPLYNFESQHSMINNSNSIRSVKFSP 243
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 9e-21
Identities = 51/293 (17%), Positives = 87/293 (29%), Gaps = 66/293 (22%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISW--SQDAKTLAVGYMASKLQLWDAETSKL--IRN 124
+++ E + + +TG + + W + LA K+ +W E + I
Sbjct: 35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 94
Query: 125 LEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRI-NAHTAEVCGLKWS 182
H V + W H G +L S D + + + + + I +AH V W+
Sbjct: 95 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154
Query: 183 -------------NEGNLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCP 228
E +GG DNLV +W ++ + + H V+ +AW P
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 229 --YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286
+ LAS QD IW K +L F
Sbjct: 215 TVLLRSYLASVS--QDRTCIIWTQDNEQ----------------GPWKKTLLKEEKFPDV 256
Query: 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ S S G + + D + W+
Sbjct: 257 --------------------------LWRASWSLSGNVLALSGGDNKVTLWKE 283
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 7e-20
Identities = 46/286 (16%), Positives = 85/286 (29%), Gaps = 49/286 (17%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETSKLIRN-- 124
+WK+ENG ++ S+ W+ L V K+ + + + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 125 LEGHDKRVATASWN------------HWNGHILTSGSQDKSI----INHDVRVSNNVTSR 168
++ H V +ASW +G D + N D + + + S
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLEST 199
Query: 169 INAHTAEVCGLKWS---NEGNLLASGGDDNLVHVWDHSKMSSS--KCLHRFRDHRAAVKA 223
+ H+ V + WS + LAS D +W K L + +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG- 282
+W NVLA GG D + +W + H
Sbjct: 260 ASWSLSG-NVLALSGG--DNKVTLWKEN------------------LEGKWEPAGEVHQG 298
Query: 283 -FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327
S G G + P + L + + ++ ++ +
Sbjct: 299 GGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFT 344
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 4e-15
Identities = 38/282 (13%), Positives = 75/282 (26%), Gaps = 47/282 (16%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWS-------------QDAKTLAVGYMASKLQLWD 115
+ + + + + S SW+ ++++ G + +++W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 116 AETS----KLIRNLEGHDKRVATASW--NHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169
+ L LEGH V +W L S SQD++ I +
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 246
Query: 170 ----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225
+ WS GN+LA G DN V +W + +
Sbjct: 247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV----------- 295
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285
SGGG K ++ I + + E N
Sbjct: 296 ----HQGGGGSGGG--GATSKEFDGPCQNEIDLLFS-------ECNDEIDNAKLIMKERR 342
Query: 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327
+ M ++ ++ ++ + +
Sbjct: 343 FTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLF 384
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 5e-12
Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 52/217 (23%)
Query: 170 NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY 229
NAH + G LA+ D + +++ + + K + H V + W
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFE-VEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 230 QF-NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG------ 282
+F +LAS DG + IW + G + + H
Sbjct: 65 KFGTILASCSY--DGKVLIWKEENGRWS-----------------QIAVHAVHSASVNSV 105
Query: 283 -FSSSGDGQKL---------CLWKYPHMTKWGELQ---------------HQTSRILELS 317
++ G L + ++ + E +
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDG 354
+ + V+ AD ++ W+ + + S L+G
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 3e-15
Identities = 29/276 (10%), Positives = 71/276 (25%), Gaps = 56/276 (20%)
Query: 70 WKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129
W + ++Q+ T ++ S + K L ++ A+
Sbjct: 44 WSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN-KGDSIKRTAAKVPSPGLGAPPIY 102
Query: 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGLKWSNEGN 186
+ ++ DKS++ DV ++ ++ + + + +
Sbjct: 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162
Query: 187 LLASGGDDNLVHVWD-HSKMSSSKCLHRFRDHRAAVKALAWCPYQFN--VLASGGGTQDG 243
+ V+ D +S H + + + + + +D
Sbjct: 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD--RDE 220
Query: 244 CIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
IKI + + + L GH
Sbjct: 221 HIKISHYPQCFIVDK------------------WLFGH---------------------- 240
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ + D L ++SA D+ + W+
Sbjct: 241 ------KHFVSSICCGKDYL-LLSAGGDDKIFAWDW 269
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 6e-15
Identities = 45/313 (14%), Positives = 88/313 (28%), Gaps = 26/313 (8%)
Query: 69 LWKQENG--EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD----AETSKLI 122
++ + V KL K P +IS ++D T+ + + D E
Sbjct: 129 VFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQ 188
Query: 123 RNLEGHDKRVATASW--NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180
+ GH + + + + +D+ I V + H V +
Sbjct: 189 EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSIC 248
Query: 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240
+ LL S G D+ + WD + K L F + L +
Sbjct: 249 CGKDY-LLLSAGGDDKIFAWD---WKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304
Query: 241 QDGCI--KIWNVQKGTCIH--SVDTKAQIC-----GLEWNRHHKEILSGHG----FSSSG 287
KI + + TK I + + K+I++ S+
Sbjct: 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHN 364
Query: 288 DGQKLCLW-KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG 346
D ++ L K + + + E S + +
Sbjct: 365 DEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTKK 424
Query: 347 DFVSHLDGLLSLK 359
+ + L + SL+
Sbjct: 425 EEIYPLYNVSSLR 437
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 4e-15
Identities = 16/212 (7%), Positives = 67/212 (31%), Gaps = 16/212 (7%)
Query: 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LIRNLEGHDKRVAT--ASWNH 139
++ D T+ + T+ G+ + +D + + HD + + +++
Sbjct: 262 LSLADSLITTFDFL-SPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD 320
Query: 140 WNGHILTSGSQDKSIINHDVR-VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198
+ ++++ + D + + ++ T+ + + + + + + +
Sbjct: 321 FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLR 380
Query: 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC--- 255
++ +H + A+ ++ +G DG + I N +
Sbjct: 381 AVPSR---AAFAVHPLVSRETTITAIGVSRLH-PMVLAGSA--DGSLIITNAARRLLHGI 434
Query: 256 --IHSVDTKAQICGLEWNRHHKEILSGHGFSS 285
+ ++ +++ + +
Sbjct: 435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEV 466
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 5e-14
Identities = 29/267 (10%), Positives = 79/267 (29%), Gaps = 25/267 (9%)
Query: 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW-----NG 142
D P + K + ++ + V W+
Sbjct: 166 DEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLV 225
Query: 143 HILTSGSQDKSIINHDVRVS----------NNVTSRINAHTAEVCGLKWSNEGNLLASGG 192
L+ SQ+ +I ++ + + ++ + + + + + G
Sbjct: 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGF 284
Query: 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL--AWCPYQFNVLASGGGTQDGCIKIWNV 250
+ V +D + + H + + ++ A+ ++ V+++ DG I+N
Sbjct: 285 KNGFVAEFDLT--DPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA--VDGYFYIFNP 340
Query: 251 QKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT 310
+ + ++ + L + + + S L L +
Sbjct: 341 KDIATTKTTVSRFRGSNLVPVVYCP---QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397
Query: 311 SRILELSQSPDGLTVVSAAADETLRFW 337
+ I + S V++ +AD +L
Sbjct: 398 TTITAIGVSRLHPMVLAGSADGSLIIT 424
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 4e-13
Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 24/241 (9%)
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSR---INAHTAEVCGLKWSNEGN------LLASG 191
+ + I + S + I EV LKW + L+
Sbjct: 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFV 231
Query: 192 GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL------AWCPYQFNVLASGGGTQDGCI 245
+ ++ + ++ + + + + +L + + G ++G +
Sbjct: 232 SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCG--FKNGFV 289
Query: 246 KIWNVQKGTCIHSVDTKAQ--ICGLEWNRHHKEILSGHGFSSSGDGQKLCLW--KYPHMT 301
+++ D I + E S+ ++ K T
Sbjct: 290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE---DTVVSTVAVDGYFYIFNPKDIATT 346
Query: 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361
K + + S ++ + P + + + +LR + VS + ++ VS
Sbjct: 347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS 406
Query: 362 P 362
Sbjct: 407 R 407
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 2e-09
Identities = 18/187 (9%), Positives = 52/187 (27%), Gaps = 9/187 (4%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
Y++ ++ K + + + AS L+ + + + L
Sbjct: 335 FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV 394
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSII--NHDVRVSNNVTSRINAH-TAEVCGLKWSN 183
+ + + + +L +GS D S+I N R+ + + + + + +S
Sbjct: 395 SRETTITAIGVSRLHPMVL-AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSI 453
Query: 184 EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243
+ + + + + H + W G
Sbjct: 454 KDDKYRIDSSYE-----VYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG 508
Query: 244 CIKIWNV 250
+ + +
Sbjct: 509 LLTLEYL 515
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 2e-14
Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 54/289 (18%)
Query: 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--------LIRNLEGHD 129
+ + SIS + D +T + LW E + N+E
Sbjct: 168 PRRIFANAHTYHINSISINSDYETYLSADDLR-INLWHLEITDRSFNIVDIKPANMEELT 226
Query: 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---------------NVTSRINAHTA 174
+ + A ++ + + S +I D+R S + S + +
Sbjct: 227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIIS 286
Query: 175 EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW------CP 228
+ +K+S+ G + + D V VWD + ++ + ++ H L
Sbjct: 287 SISDVKFSHSGRYMMTR-DYLSVKVWDLNM--ENRPVETYQVHEYLRSKLCSLYENDCIF 343
Query: 229 YQFNVLASGGGTQ------DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG 282
+F +G + + ++++ I ++ N + +L
Sbjct: 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRE-------NNKPRTVLKPRK 396
Query: 283 FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD 331
+SG +K + +IL + P + A +
Sbjct: 397 VCASGKRKK--------DEISVDSLDFNKKILHTAWHPKENIIAVATTN 437
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 2e-14
Identities = 34/290 (11%), Positives = 79/290 (27%), Gaps = 52/290 (17%)
Query: 91 TSISWSQ--DAKTLAVGYMASKLQLWDAETSKLIR---NLEGHDKRVATASWNHWNGHIL 145
I W +A + ++LW NL+ D R + +
Sbjct: 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTT-VTTLRVP 155
Query: 146 TSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205
D + R+ N AHT + + +++ S DD +++W
Sbjct: 156 VFRPMDLMVEASPRRIFAN------AHTYHINSISINSDYETYLSA-DDLRINLWHLEIT 208
Query: 206 SSSKCLHRFR-----DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260
S + + + + A + P N + G I++ +++ D
Sbjct: 209 DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS--SSKGTIRLCDMRASA---LCD 263
Query: 261 TKAQICGLEWNRHHKEILSGHG-------FSS------SGDGQKLCLWKYPHMTK----- 302
+++ + ++ S FS + D + +W +
Sbjct: 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY 323
Query: 303 -----------WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341
E + V++ + + R ++
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT 373
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 4e-09
Identities = 35/323 (10%), Positives = 88/323 (27%), Gaps = 66/323 (20%)
Query: 70 WKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129
W + V E D +++ ++ + LA G ++ ++ E I++ +
Sbjct: 12 WCFSQVKGAVDDDVA-EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE 70
Query: 130 KRVATASWNHW------------------------NGHILTSGSQDKSIINHDVRVSNNV 165
V + +H N + DK+I + +
Sbjct: 71 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKR 130
Query: 166 TSRINA--HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223
N + D +V +++ H + +
Sbjct: 131 PEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA--------HTYHINS 182
Query: 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS---- 279
++ L++ D I +W+++ ++ I + I +
Sbjct: 183 ISINSDYETYLSAD----DLRINLWHLEITDRSFNIV---DIKPANMEELTEVITAAEFH 235
Query: 280 ---GHGFSSSGDGQKLCLW-------KYPHMTKWGELQHQ---------TSRILELSQSP 320
+ F S + L H + E + S I ++ S
Sbjct: 236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH 295
Query: 321 DGLTVVSAAADETLRFWEAFGPS 343
G +++ +++ W+ +
Sbjct: 296 SGRYMMT-RDYLSVKVWDLNMEN 317
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 3e-06
Identities = 30/243 (12%), Positives = 62/243 (25%), Gaps = 39/243 (16%)
Query: 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD--HSK 204
+G+ + I A + +++++ G LLA+G V ++
Sbjct: 2 AGAGGGNDIQWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQEN 61
Query: 205 MSSSKCLHRFR------------------DHRAAVKALAWCPYQ-FNVLASGGGTQDGCI 245
S + + + + W P + D I
Sbjct: 62 KIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST--NDKTI 119
Query: 246 KIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305
K+W + + +E ++ + M +
Sbjct: 120 KLWKISERDKRPEGYN-----------LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP 168
Query: 306 LQ----HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361
+ T I +S + D T +S A D + W S + V +
Sbjct: 169 RRIFANAHTYHINSISINSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTE 227
Query: 362 PIR 364
I
Sbjct: 228 VIT 230
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 5e-04
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD 151
W+ + G + +++D T + I + + SG +
Sbjct: 347 ECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLK--PRKVCASGKRK 404
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196
K I+ D S + +I HTA W + N++A +NL
Sbjct: 405 KDEISVD---SLDFNKKI-LHTA------WHPKENIIAVATTNNL 439
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 3e-14
Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 19/174 (10%)
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231
+++ + NLLA VH++ + + R+A+K + + +
Sbjct: 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYG----QQQVEVVIKLEDRSAIKEMRFVKGIY 71
Query: 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG---- 287
V+ + + + ++ + +V +I ++ + +L G +G
Sbjct: 72 LVVINA----KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIG---LQNGSMIV 124
Query: 288 ---DGQKLCLWKYPHMTK-WGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
D +L +K ++ K + S I+ + +P + V + + +
Sbjct: 125 YDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTY 178
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 3e-07
Identities = 31/312 (9%), Positives = 71/312 (22%), Gaps = 46/312 (14%)
Query: 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE 117
++ I +Y+ + QK+L TSI + +G + ++D +
Sbjct: 72 LVVINAKDTVYVL---SLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDID 128
Query: 118 T-----------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSII----------- 155
K + + WN + + + ++
Sbjct: 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQS 188
Query: 156 -----NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
+ T +V + + + +DN + WD +S
Sbjct: 189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD---ANSGHM 245
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270
+ + + KI V + T I
Sbjct: 246 IMARTVFETEINVPQP--------DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297
Query: 271 NRHHKEIL-----SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTV 325
+R + L S + + + I+ + P
Sbjct: 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPY 357
Query: 326 VSAAADETLRFW 337
+ + L
Sbjct: 358 FAGCHNPGLILL 369
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 24/271 (8%), Positives = 74/271 (27%), Gaps = 29/271 (10%)
Query: 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH 143
+ ++ + + + L WDA + +I + + N
Sbjct: 208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI-----NVPQPD 262
Query: 144 ILTSGSQDKSII---------NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194
+ S + + I N + I+ + + + +
Sbjct: 263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322
Query: 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254
+ + + + K L + + P Q A + + + + G
Sbjct: 323 GMKNYYANPKQMKIFPL----PTNVPIVNILPIPRQSPYFAG---CHNPGLILLILGNGE 375
Query: 255 CIHSVDTKAQICGLEWNRHHKEILSGH------GFSSSGDGQKLCLWKYPHMTKWGELQH 308
I ++ + I + + + + +S + L + L+
Sbjct: 376 -IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDY-LLKG 433
Query: 309 QTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ + G ++ ++ ++R ++A
Sbjct: 434 GVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-13
Identities = 30/171 (17%), Positives = 47/171 (27%), Gaps = 19/171 (11%)
Query: 90 PTSISWSQDAKTLAVGYMA----SKLQLWDAET-----------SKLIRNLEGHDKRVAT 134
++ S D TL+ M+ S + +D T + L+ V
Sbjct: 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVID 154
Query: 135 ASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194
WN ++ D SI V T V + WS +G LA G +
Sbjct: 155 MKWNPTVPSMVAVCLADGSIAVLQVT-ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN 213
Query: 195 NLVHVWDHS---KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242
V + + K DH V + W +
Sbjct: 214 GTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-06
Identities = 20/179 (11%), Positives = 44/179 (24%), Gaps = 63/179 (35%)
Query: 172 HTAEVCGLKWSNEGNLLA----SGGDDNLVHVWDHSKMSSS--------KCLHRFRDHRA 219
+ L S + L+ S +++ +D S+ +D
Sbjct: 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG 150
Query: 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSVDTKAQICGLEWNRHHKEIL 278
V + W P +++A DG I + V + ++ + + + W
Sbjct: 151 MVIDMKWNPTVPSMVAVC--LADGSIAVLQVTETVKVCATLPSTVAVTSVCW-------- 200
Query: 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
SP G + + T+ +
Sbjct: 201 ----------------------------------------SPKGKQLAVGKQNGTVVQY 219
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 8e-13
Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 11/148 (7%)
Query: 113 LWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIIN-HDVRVSNNV-TSRIN 170
+ ++ H + N ++ + SQD +II V R
Sbjct: 179 VQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRG 237
Query: 171 AHTAEVCGLKWSNEGNLLASGGDDNLVHVWD--------HSKMSSSKCLHRFRDHRAAVK 222
A+V +KWS +G+ LA D +HV++ + + F+ +
Sbjct: 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297
Query: 223 ALAWCPYQFNVLASGGGTQDGCIKIWNV 250
++ + +W
Sbjct: 298 FKLSVDKHVRGCKIAWISESSLVVVWPH 325
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 5e-12
Identities = 38/286 (13%), Positives = 84/286 (29%), Gaps = 38/286 (13%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
T ++QD L + ++++ I + E ++ H ++
Sbjct: 23 TDYEFNQDQSCLILS-TLKSFEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTGV 79
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
+ + D SRI V L S E +++ +++ V+
Sbjct: 80 KEVVHIWDDV-KKQDVSRIKVDA-PVKDLFLSREFIVVSY---GDVISVFKFGNPWKRIT 134
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270
C + +L G I I +Q + D Q +
Sbjct: 135 DDIRFG--------GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ---QKA 183
Query: 271 NRHHKEILSGH-------GFSSSG--------DGQKLCLWKYPHMTKWGELQ--HQTSRI 313
++ H + DG + ++K E + + +
Sbjct: 184 ILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADV 243
Query: 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLK 359
+++ S DG + + TL +E + + L G +++K
Sbjct: 244 VDMKWSTDGSKLAVVSDKWTLHVFEI--FNDQDNKRHALKGWINMK 287
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 1e-10
Identities = 36/303 (11%), Positives = 78/303 (25%), Gaps = 62/303 (20%)
Query: 54 GRNNILAIALGLE--LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKL 111
R N +A G++ +++W + + ++ V +
Sbjct: 68 HRTNYVAFVTGVKEVVHIWDDVKK------QDVSRIKVDAPVKDLFLSREFIVVSYGDVI 121
Query: 112 QLWDAETSKLIRNLEGHDKRVAT-------ASWNHWNGHI-LTSGSQDKSIINHDVRVSN 163
++ + V S G I +T S D V
Sbjct: 122 SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181
Query: 164 NVTSR----INAHTAEVCGLKWSNEGNLLASGGDDN-LVHVWDHSKMSSSKCLHRFRDH- 217
I AHT + ++ + + +++A+ D ++ V+ + FR
Sbjct: 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK---TEDGVLVREFRRGL 238
Query: 218 -RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKE 276
RA V + W + LA + ++ + K
Sbjct: 239 DRADVVDMKWSTDG-SKLAVVSD--KWTLHVFEIFNDQDNKR-------------HALKG 282
Query: 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336
++ F S +W + S + G + + +
Sbjct: 283 WINMKYFQS----------------EWSLCNFKLSV----DKHVRGCKIAWISESSLVVV 322
Query: 337 WEA 339
W
Sbjct: 323 WPH 325
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-06
Identities = 23/200 (11%), Positives = 65/200 (32%), Gaps = 17/200 (8%)
Query: 170 NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY 229
N + V +++ + + L + +++ ++ + + H + V+ L Y
Sbjct: 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA--HIMSQEMRHLSKVRMLHRTNY 72
Query: 230 QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289
V G + IW+ K + + A + L +R + G S G
Sbjct: 73 ---VAFVTGV--KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFG 127
Query: 290 QKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTV-------VSAAADETLRFWEAFGP 342
+ ++G + ++ +L S + + +A + +
Sbjct: 128 N--PWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAIL 185
Query: 343 SGSGDFVSHLDGLLSLKVSP 362
+H + + ++++
Sbjct: 186 GKGVLIKAHTNPIKMVRLNR 205
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 21/146 (14%)
Query: 78 QKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKLIRNLEGHDKRVATAS 136
K + + + + ++ + +A + ++++ E L+R R
Sbjct: 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVD 245
Query: 137 --WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV----CGLKWS-------- 182
W+ +G L S ++ H + N+ ++ +A + +WS
Sbjct: 246 MKWST-DGSKLAVVSDKWTL--HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV 302
Query: 183 ---NEGNLLASGGDDNLVHVWDHSKM 205
G +A + +LV VW H++M
Sbjct: 303 DKHVRGCKIAWISESSLVVVWPHTRM 328
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 364 | |||
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.98 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.96 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.95 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.94 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.93 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.93 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.93 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.93 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.92 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.91 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.9 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.9 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.89 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.89 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.88 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.87 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.86 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.85 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.85 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.85 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.85 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.85 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.84 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.83 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.82 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.82 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.81 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.81 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.8 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.8 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.8 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.78 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.78 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.78 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.77 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.76 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.76 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.75 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.74 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.74 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.73 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.73 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.72 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.72 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.71 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.71 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.7 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.69 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.68 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.67 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.66 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.66 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.66 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.61 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.61 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.6 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.6 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.6 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.59 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.59 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.55 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.54 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.53 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.52 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.5 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.49 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.48 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.48 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.46 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.45 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.44 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.44 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.43 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.42 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.41 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.41 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.4 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.39 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.38 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.37 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.36 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.34 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.29 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.28 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.27 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.22 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.22 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.18 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.17 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.16 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.15 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.15 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.15 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.12 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.12 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.11 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.09 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.09 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.09 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.06 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.05 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.05 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.05 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.04 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.04 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.01 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.99 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.97 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.97 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.96 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.96 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.94 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.94 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.94 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.93 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.88 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.88 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.88 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.86 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.85 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.84 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.83 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.83 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.79 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.79 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.78 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.78 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.76 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.76 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.74 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.74 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.73 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.72 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.71 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.67 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.66 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.63 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.55 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.54 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.5 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.44 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.43 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.42 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.42 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.38 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.25 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.16 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.15 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.11 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.08 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.08 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.03 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.0 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.99 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.93 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.9 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.86 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.82 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.75 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.74 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.71 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.69 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.62 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.58 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.55 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.51 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.5 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.5 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.43 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.26 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.21 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.21 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.19 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.08 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.07 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.93 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.81 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.74 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.65 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.58 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.54 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.53 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.42 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.39 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.39 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.32 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.11 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.92 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.83 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.4 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.37 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 94.65 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.28 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 90.67 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.83 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.65 |
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-55 Score=385.07 Aligned_cols=326 Identities=44% Similarity=0.840 Sum_probs=291.8
Q ss_pred CCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE
Q 040533 23 GSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL 102 (364)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 102 (364)
++..|.+|..|++++++|.+.+|||++.++|+++++||++.|+.|+|||..+++....+.+.+|...|++++|+|+|++|
T Consensus 83 ~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 83 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred cCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEE
Confidence 45568899999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 103 AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
|+|+.||.|+|||+++++.+..+.+|...+.++++ ++.+|++|+.|+.+++||..........+.+|...+..+.|+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999999999999999999999999888 678999999999999999998877788889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCC-cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
|+++++++++.|+.+++||....... ..+.....|...|.+++|+|.+..++++++|+.|++|++||+.++++...+..
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~ 319 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence 99999999999999999998865432 34566778899999999999999999987778999999999999999999999
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+..+.++.|+|++..++++.+ ..|+.|++||+.+++++.++.+|.+.|++++|+|+|++|++|+.||+|+|||+..
T Consensus 320 ~~~v~~~~~~~~~~~lv~~sg----~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 320 HSQVCSILWSPHYKELISGHG----FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEEC----TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ccceeeeeecCCCCeEEEEEe----cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999999999999998754 3499999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcceeccCCce
Q 040533 342 PSGSGDFVSHLDGL 355 (364)
Q Consensus 342 ~~~~~~~~~~~~~v 355 (364)
.........+...+
T Consensus 396 ~~~~~~~~~~~~~~ 409 (420)
T 4gga_A 396 LDPARRREREKASA 409 (420)
T ss_dssp SSCC----------
T ss_pred CCccchhhhccCCc
Confidence 76665555444433
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-52 Score=352.37 Aligned_cols=314 Identities=46% Similarity=0.882 Sum_probs=284.5
Q ss_pred CCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE
Q 040533 23 GSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL 102 (364)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 102 (364)
++..|.+|..|++++++|.+.+++|+++++||++++||++.|+.|+|||+.+++..+.+.+.+|...|++++|+|++++|
T Consensus 3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 34568999999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 103 AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
++|+.||.|++||+++++.+..+.+|...+.++.+ ++.++++++.++.+++|+..........+.+|...+..+.++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999999999999999999999887766 678999999999999999998877788888999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCC-cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
++++++++++.|+.|++||+++.+.. ........+.+.|.++.++|++..++..++++.++.|++||............
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~ 239 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc
Confidence 99999999999999999999875432 23455566788999999999998888766566899999999999999988888
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
...+..+.|+|.+..++++.+ +.|+.|++||+++++++.++.+|.+.|++++|+|+|++|++|+.||+|+|||+.+
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg----~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHG----FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEEC----TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eeeeeeeeecccccceEEEEE----cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 899999999999999987643 4599999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 040533 342 PS 343 (364)
Q Consensus 342 ~~ 343 (364)
..
T Consensus 316 ~d 317 (318)
T 4ggc_A 316 LD 317 (318)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-50 Score=349.69 Aligned_cols=324 Identities=37% Similarity=0.706 Sum_probs=278.4
Q ss_pred CCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE
Q 040533 25 PTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV 104 (364)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 104 (364)
..+.++..|+++++.+.+..++++.+++|+++.+++++.|+.|++||..+++....... .|...|++++|+|++++|++
T Consensus 73 ~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~ 151 (401)
T 4aez_A 73 AKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSV 151 (401)
T ss_dssp --CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEE
T ss_pred ccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEE
Confidence 45778899999999999999999999999999999999999999999999987666654 48899999999999999999
Q ss_pred EecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC
Q 040533 105 GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184 (364)
Q Consensus 105 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (364)
|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++++.||.|++||++........+..|...|.+++|+|+
T Consensus 152 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 152 GLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228 (401)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred ECCCCeEEEEECcCCeEEEEecCCCCceEEEEE---CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC
Confidence 999999999999999999999999999999999 56799999999999999999766667888899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ 264 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~ 264 (364)
+++|++++.|+.|++||++.. ..+..+..|...|.+++|+|++..++++++|+.|+.|++||+.+++.+..+.++..
T Consensus 229 ~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~ 305 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDARSS---IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ 305 (401)
T ss_dssp SSEEEEEETTSCEEEEETTCS---SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEeCCCeEEEccCCCC---CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 999999999999999998864 45777888999999999999998999997666899999999999999999999999
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee--eccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG--ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+.+++|+|++++++++.+ ..++.|++||+.+++... .+.+|...|.+++|+|+|++|++++.||.|++|++.++
T Consensus 306 v~~~~~s~~~~~l~~~~g----~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHG----FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEEECSSSSEEEEEEC----TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred EEEEEECCCCCeEEEEee----cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999998532 349999999999865544 46789999999999999999999999999999999998
Q ss_pred CCCccee-ccCCceeeee
Q 040533 343 SGSGDFV-SHLDGLLSLK 359 (364)
Q Consensus 343 ~~~~~~~-~~~~~v~~~~ 359 (364)
+.+.... .+..+..++.
T Consensus 382 ~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 382 DHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp ------------------
T ss_pred ccccccccccCCCcccee
Confidence 8766543 2333444443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-49 Score=346.48 Aligned_cols=279 Identities=25% Similarity=0.444 Sum_probs=252.3
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|+ .+++++.|+.|++||+.+++... .+.+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+..
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~ 187 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 187 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence 4788889885 37778889999999999988654 4559999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...|.+++|+| ++++|++|+.|++|++||++++.. ...+.+|...|.++.|+|++.+|++|+.|+.|++||++.
T Consensus 188 ~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~ 265 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265 (410)
T ss_dssp CCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999999 999999999999999999998764 677889999999999999999999999999999999876
Q ss_pred CCCCcceEEecccccceeEEEEccCC-------------------CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQ-------------------FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQ 264 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~ 264 (364)
. .....+.+|...|.+++|+|++ ..++++++ .|+.|++||+++++++..+..+ ..
T Consensus 266 ~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~ 340 (410)
T 1vyh_C 266 K---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNW 340 (410)
T ss_dssp C---CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSC
T ss_pred C---ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECCCCc
Confidence 4 4577888999999999999973 24677776 8999999999999999888754 67
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|.+++|+|++++++++.. |+.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|++|+++
T Consensus 341 v~~v~~~~~g~~l~s~s~------D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 341 VRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999998854 9999999999999999999999999999999999999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-49 Score=333.52 Aligned_cols=280 Identities=18% Similarity=0.343 Sum_probs=253.4
Q ss_pred eeecccCCCc------cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 47 YSNMMDWGRN------NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 47 ~~~~~~~~~~------~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
.+.+++|+++ .+++++.|+.|++|+..+++......+.+|...|.+++|+|++.++++|+.|+.|++||+.+++
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~ 113 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK 113 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 4788888763 3778889999999999888766666778999999999999999999999999999999999999
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.+..+..|...+.+++|+| ++++|++++.||.|++||++++.. ...+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iw 191 (321)
T 3ow8_A 114 QIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191 (321)
T ss_dssp EEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 9999999999999999999 999999999999999999997765 55677888999999999999999999999999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceee
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILS 279 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~ 279 (364)
|+++. +.+..+.+|..+|.+++|+|++ .++++++ .|+.|++||+++++....+..+ ..|.+++|+|+++++++
T Consensus 192 d~~~~---~~~~~~~~h~~~v~~l~~spd~-~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 192 DIATG---KLLHTLEGHAMPIRSLTFSPDS-QLLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp ETTTT---EEEEEECCCSSCCCEEEECTTS-CEEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECCCC---cEEEEEcccCCceeEEEEcCCC-CEEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE
Confidence 98764 4578888999999999999998 4666765 8999999999999998888754 67999999999999998
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+.. |+.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 266 ~s~------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 266 SSS------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EET------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EeC------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 854 9999999999999999999999999999999999999999999999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=328.73 Aligned_cols=271 Identities=17% Similarity=0.276 Sum_probs=245.2
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+| ++++|++|+.|+.|++||+.
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence 44568999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+++. ...+.+|...|.+++|+|++++|++|+.|++|++||++... .....+.+|...|.+++|+|.+..++++++
T Consensus 86 ~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs-- 160 (304)
T 2ynn_A 86 TGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPSTFASGC-- 160 (304)
T ss_dssp TCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT--EEEEEECCCCSCEEEEEECTTCTTEEEEEE--
T ss_pred CCcE-EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc--chhhhhcccCCcEEEEEECCCCCCEEEEEe--
Confidence 8775 66788999999999999999999999999999999987542 345677889999999999997667888877
Q ss_pred CCCeEEEEECCCCeEEEEEec--CCCeEEEEEcC--CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEE
Q 040533 241 QDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNR--HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
.|++|++||++++.....+.. ...+..+.|+| ++.+++++.. |+.|++||+++++++..+.+|...|.++
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~------D~~i~iWd~~~~~~~~~~~~h~~~v~~~ 234 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET------TSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC------CCeEEEEeCCCCccceeeCCCCCCEEEE
Confidence 899999999988776655543 36688899887 6778888754 9999999999999999999999999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+|+|++++|++|+.||+|++||+.+++....+..|.+.+++++|+|.
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 99999999999999999999999999999999999999999999884
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=327.15 Aligned_cols=274 Identities=18% Similarity=0.407 Sum_probs=244.1
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc----ce
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----KL 121 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~~ 121 (364)
+.+++|++++ +++++.|+.|++||..+++... .+..|...|.+++|+|++++|++|+.|+.|++|++.++ ..
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 7788888863 7778889999999999887644 44588999999999999999999999999999999875 34
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
...+.+|...|.++.|++ ++ .+++++.|+.|++||++++.. ...+.+|...|.+++|+|+++++++|+.|+.|++||
T Consensus 136 ~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 567788999999999997 55 488999999999999987764 667889999999999999999999999999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCcccee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEIL 278 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~ 278 (364)
++.. ..+..+.+|...|.+++|+|++ .++++++ .|+.|++||+++++.+..+.+. ..+.+++|+|++++++
T Consensus 213 ~~~~---~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 213 VREG---MCRQTFTGHESDINAICFFPNG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp TTTC---SEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred CCCC---eeEEEEcCCcCCEEEEEEcCCC-CEEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence 8764 4578888999999999999998 5666665 8999999999999988887654 3699999999999999
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
++.. |+.|++||+.+++.+..+.+|.+.|.+++|+|+|.+|++|+.||.|++||
T Consensus 287 ~g~~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 287 AGYD------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECC------CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9855 99999999999999999999999999999999999999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=335.99 Aligned_cols=269 Identities=20% Similarity=0.348 Sum_probs=246.9
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+|...|++++|+|++++|++|+.||+|+|||+.+++....+.+|...|.+++|+| ++++|++|+.|++|++||+.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETT
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Confidence 45669999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+.+ ....+.+|...|.+++|+|++++|++|+.|+.|++||++++ .++..+.+|...|.++.|+|++ .++++++
T Consensus 181 ~~~-~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s-- 253 (410)
T 1vyh_C 181 GFE-CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDG-TLIASCS-- 253 (410)
T ss_dssp SSC-EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTS-SEEEEEE--
T ss_pred CCc-eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeCCCccEEEEEECCCC-CEEEEEc--
Confidence 766 46778899999999999999999999999999999998764 4578888999999999999998 5666665
Q ss_pred CCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCC--------------------ccceeeeccCCccCCCCeEEEeeCCC
Q 040533 241 QDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRH--------------------HKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~--------------------~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.|+.|++||+.++++...+.. ...+.+++|+|+ +.+++++. .|+.|++||+.+
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs------~D~~i~iwd~~~ 327 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS------RDKTIKMWDVST 327 (410)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE------TTSEEEEEETTT
T ss_pred CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe------CCCeEEEEECCC
Confidence 899999999999998888854 467999999997 45677664 499999999999
Q ss_pred CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 300 MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 300 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++++..+.+|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|.
T Consensus 328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 391 (410)
T 1vyh_C 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 391 (410)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS
T ss_pred CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=319.03 Aligned_cols=279 Identities=18% Similarity=0.343 Sum_probs=244.0
Q ss_pred eecccCCCc---cEEEEEeCCeEEEEECCCCce---eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRN---NILAIALGLELYLWKQENGEV---QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~---~~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.+++|+++ .+++++.|+.|++|++.+... .....+.+|...|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~ 99 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET 99 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe
Confidence 777888873 377888999999999865432 23456779999999999999999999999999999999999999
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC------CCEEEEEeCCC
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE------GNLLASGGDDN 195 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~ 195 (364)
+..+.+|...|.+++|+| ++.+|++|+.|++|++||++.. ....+.+|...|.++.|+|. +..+++++.|+
T Consensus 100 ~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~ 176 (319)
T 3frx_A 100 YQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176 (319)
T ss_dssp EEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEEETTS
T ss_pred eEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCC
Confidence 999999999999999999 9999999999999999999633 36677899999999999985 44899999999
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcc
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 275 (364)
.|++||++.. +....+.+|...|.+++|+|++ .++++++ .|+.|++||+.+++.+..+..+..+.+++|+|++.
T Consensus 177 ~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 177 MVKAWNLNQF---QIEADFIGHNSNINTLTASPDG-TLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250 (319)
T ss_dssp CEEEEETTTT---EEEEEECCCCSCEEEEEECTTS-SEEEEEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSS
T ss_pred EEEEEECCcc---hhheeecCCCCcEEEEEEcCCC-CEEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCC
Confidence 9999998764 4577788999999999999998 4666665 89999999999999999999889999999999999
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeecc--------ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--------HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--------~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+++++. ++.+++|++.....+..+. .|...+.+++|+|+|++|++|+.||.|++||+.+.
T Consensus 251 ~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 251 WLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEEc-------CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 998875 6679999998876665543 34567899999999999999999999999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-46 Score=318.18 Aligned_cols=275 Identities=19% Similarity=0.359 Sum_probs=243.8
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc------
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS------ 119 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------ 119 (364)
+.+++|+|+ .+++++.|+.|++||..+++..... ..|...|.+++|+|++.+|++|+.|+.+++|++...
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV--TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE--ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 788888885 3778889999999999888765444 477889999999999999999999999999998643
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC--CCCEEEEEeCCCeE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN--EGNLLASGGDDNLV 197 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i 197 (364)
.....+..|...|.+++|+| ++..|++++.|++|++||+++++. ...+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v 222 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222 (354)
T ss_dssp GGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred ccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence 34556778999999999999 899999999999999999987764 677889999999999988 56899999999999
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCc
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHH 274 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~ 274 (364)
++||+++. +.+..+.+|...|.+++|+|++ .++++++ .|++|++||+++++.+..+..+ ..+.+++|+|++
T Consensus 223 ~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 223 MVWDMRSG---QCVQAFETHESDVNSVRYYPSG-DAFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp EEEETTTC---CEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEEECCCC---cEEEEecCCCCCeEEEEEeCCC-CEEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 99998874 4578888999999999999998 5667766 8999999999999888777544 368899999999
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.+++++.. |+.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||+|++|+
T Consensus 297 ~~l~~g~~------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYN------DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEET------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEC------CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999865 99999999999999999999999999999999999999999999999995
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=345.40 Aligned_cols=304 Identities=16% Similarity=0.235 Sum_probs=251.6
Q ss_pred eeecccCCCcc---EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.+.+++|+|++ +++++.|+.|++||..+++.. ..+.+|...|.+++|+|++++||+|+.|++|++||+.+++...
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~--~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK--STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe--eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee
Confidence 47888999863 777888999999999887654 4456999999999999999999999999999999999998888
Q ss_pred eee-------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-------------------------------
Q 040533 124 NLE-------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV------------------------------- 165 (364)
Q Consensus 124 ~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------------------------------- 165 (364)
.+. +|...|.+++|+| ++++|++++.|++|++||+.+++..
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 774 7999999999999 9999999999999999999865421
Q ss_pred -----------eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcce-----------------------
Q 040533 166 -----------TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL----------------------- 211 (364)
Q Consensus 166 -----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------- 211 (364)
...+.+|...|.+++|+|++++|++++.|+.|++||+.+.......
T Consensus 306 i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence 1234579999999999999999999999999999998753210000
Q ss_pred ---------------------------------------------------------EEecccccceeEEEEccCCCcEE
Q 040533 212 ---------------------------------------------------------HRFRDHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 212 ---------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~ 234 (364)
..+ .|...+.+++|+|++ .++
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg-~~l 463 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDK-QFV 463 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTS-CEE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCC-CEE
Confidence 000 123457789999998 566
Q ss_pred EeecCCCCCeEEEEECCCCeE--EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeee--cccc
Q 040533 235 ASGGGTQDGCIKIWNVQKGTC--IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGE--LQHQ 309 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~--~~~~ 309 (364)
++++ .|++|++||+.++.. .....+...|.+++|+|+|++|+++.. |+.|++|++.+ ++.... +..|
T Consensus 464 asgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~------d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 464 AVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ------SRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp EEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSCEEEEEGGGTTEESCCCCCCCC
T ss_pred EEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC------CCCEEEEEcCCCCceeeeeeeeec
Confidence 7766 899999999987654 344556788999999999999999855 99999999987 555443 3459
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC-C-cceecc-CCceeeeeeccC
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG-S-GDFVSH-LDGLLSLKVSPI 363 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~-~-~~~~~~-~~~v~~~~~sp~ 363 (364)
...|.+++|+|+|++|++|+.|++|++|++.++.. . ..+.+| .+.|++++|+|.
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d 592 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 592 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCC
Confidence 99999999999999999999999999999988653 3 456688 899999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-47 Score=322.95 Aligned_cols=283 Identities=18% Similarity=0.207 Sum_probs=228.3
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCc---------eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGE---------VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
.+.+++|+|++ +++++.|+.+++||..... .........+...|.+++|+|++ .|++|+.||+|+|||+
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEec
Confidence 47889999974 7777778887777632110 00111112456789999999985 6889999999999999
Q ss_pred CCcceeee----eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC-CEEEEE
Q 040533 117 ETSKLIRN----LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASG 191 (364)
Q Consensus 117 ~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 191 (364)
++++.+.. ..+|...|++++|+| ++++|++|+.|++|++||+++++ .+..+.+|...|.+++|+|++ .+|+++
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred cCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCCCCceeee
Confidence 98876543 347999999999999 99999999999999999999776 477888999999999999987 478999
Q ss_pred eCCCeEEEEeCCCCCCCcceEEe--cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEE
Q 040533 192 GDDNLVHVWDHSKMSSSKCLHRF--RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGL 268 (364)
Q Consensus 192 ~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~ 268 (364)
+.|+.|++||++..+. ...+ ..+...+.+++|+|++..++++++ .|+.|++||+++++++..+..+ ..|.++
T Consensus 189 s~D~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKP---ASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp ETTSCEEEEETTSSSC---EEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred ccccccccccccccce---eeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 9999999999887543 4444 345567899999998888999887 8999999999999999888754 779999
Q ss_pred EEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCCC
Q 040533 269 EWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 269 ~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~~ 344 (364)
+|+|++. +|+++. .|+.|++||+.+++.+ .+.+|.+.|++++|+|+++ +|++|+.||+|++|++.+...
T Consensus 264 ~fsp~g~~~lasgs------~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 264 VFSPHSVPFLASLS------EDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EECSSSSCCEEEEE------TTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEccCCCeEEEEEe------CCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9999985 677664 4999999999988754 5688999999999999986 567999999999999987543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=320.28 Aligned_cols=291 Identities=20% Similarity=0.376 Sum_probs=237.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeee-eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--ce
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLL-KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--KL 121 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~ 121 (364)
.+..++|+|++ +++++.|+.|++||..++...... ...+|...|.+++|+|++++|++|+.|+.|++|++.++ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 36778898864 677788999999999887643322 23589999999999999999999999999999998876 45
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc--eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN--VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+..+.+|...|.+++|+| ++++|++|+.|+.|++||++.... ....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 98 ~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~ 176 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176 (345)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEE
T ss_pred EEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEE
Confidence 678889999999999999 999999999999999999986643 34567789999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC---------------eEEEEEe--cC
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG---------------TCIHSVD--TK 262 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---------------~~~~~~~--~~ 262 (364)
||.+... ......+.+|...|.+++|+|++ .++++++ .|++|++||.... +++..+. +.
T Consensus 177 w~~~~~~-~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 252 (345)
T 3fm0_A 177 YREEEDD-WVCCATLEGHESTVWSLAFDPSG-QRLASCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252 (345)
T ss_dssp EEEETTE-EEEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred EEecCCC-EEEEEEecCCCCceEEEEECCCC-CEEEEEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence 9976542 13456788999999999999998 4666665 8999999996321 2333443 34
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce---------eeeccccccceeEEeecCCC-CEEEEEeCCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---------WGELQHQTSRILELSQSPDG-LTVVSAAADE 332 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---------~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg 332 (364)
..|.+++|+|++..++++.. |+.|++|+...... .....+|...|++++|+|++ .+||+|+.||
T Consensus 253 ~~v~~v~~~~~~~~l~s~~~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 253 RTIYDIAWCQLTGALATACG------DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp SCEEEEEECTTTCCEEEEET------TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CcEEEEEEecCCCEEEEEeC------CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 67999999999999998865 99999999865431 12345799999999999998 4999999999
Q ss_pred cEEEEEeeCCCCCcce
Q 040533 333 TLRFWEAFGPSGSGDF 348 (364)
Q Consensus 333 ~i~vw~~~~~~~~~~~ 348 (364)
+|++|++.+++....+
T Consensus 327 ~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 327 EVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CEEEEEECC-------
T ss_pred cEEEEEecCCCCcccc
Confidence 9999999988766543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=324.45 Aligned_cols=283 Identities=18% Similarity=0.360 Sum_probs=244.8
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-----
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK----- 120 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~----- 120 (364)
+.+++|+|+ .+++++.|+.|++||..+++... .+..|...|.+++|+|++++|++|+.|+.+++|++.+..
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~ 146 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGN 146 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCC
Confidence 788888885 47888899999999999887644 445899999999999999999999999999999986532
Q ss_pred --eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee-----ecccCcEEEEEEcC-CCCEEEEEe
Q 040533 121 --LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI-----NAHTAEVCGLKWSN-EGNLLASGG 192 (364)
Q Consensus 121 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~ 192 (364)
....+.+|.+.|.++.|+|.++..|++|+.|++|++||+++++. ...+ .+|...|.+++|++ ++++|++|+
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 34567889999999999995577899999999999999998775 3333 57899999999987 889999999
Q ss_pred CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CC
Q 040533 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQ 264 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~ 264 (364)
.|+.|++||++.. ...+..+.+|...|.+++|+|++ ..+++++ .|++|++||+++++.+..+..+ ..
T Consensus 226 ~D~~v~~wd~~~~--~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 226 CDTTVRLWDLRIT--SRAVRTYHGHEGDINSVKFFPDG-QRFGTGS--DDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp TTSCEEEEETTTT--CCCCEEECCCSSCCCEEEECTTS-SEEEEEC--SSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred CCCeEEEEECCCC--CcceEEECCcCCCeEEEEEecCC-CeEEEEc--CCCeEEEEECCCCcEEEEecccccccccccCc
Confidence 9999999998743 24577888999999999999998 5667765 8999999999999998887543 23
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec----cccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL----QHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+.+++|+|+|+++++|.. |+.|++||..+++.+..+ .+|.+.|++++|+|+|++|++|+.||+|++|++.
T Consensus 301 v~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYS------NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSEEEECSSSSEEEEECT------TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred eEEEEECCCCCEEEEEEC------CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 889999999999999854 999999999998888776 6799999999999999999999999999999988
Q ss_pred CCCC
Q 040533 341 GPSG 344 (364)
Q Consensus 341 ~~~~ 344 (364)
..+.
T Consensus 375 ~~~~ 378 (380)
T 3iz6_a 375 GHRK 378 (380)
T ss_dssp SSSS
T ss_pred CCcc
Confidence 6543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=316.08 Aligned_cols=268 Identities=21% Similarity=0.360 Sum_probs=239.7
Q ss_pred eecCCCCCceEEEEcCC----CCEEEEEecCCcEEEEecCCcce--eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 82 KVTGEDDFPTSISWSQD----AKTLAVGYMASKLQLWDAETSKL--IRNLEGHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
...+|.+.|.+++|+|+ +.+|++|+.|++|+||++.+++. ...+.+|...|.+++|+| ++.++++++.|++|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 34589999999999985 57999999999999999987653 446789999999999999 999999999999999
Q ss_pred EEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 156 NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
+||+.+++. ...+..|...+.+++|+|++++|++++.|+.|++||++... ....+..+...|.+++|+|+++ +++
T Consensus 106 lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~---~~~~~~~~~~~v~~~~~spdg~-~la 180 (321)
T 3ow8_A 106 LWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK---KEYSLDTRGKFILSIAYSPDGK-YLA 180 (321)
T ss_dssp EEETTTTEE-EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS---EEEEEECSSSCEEEEEECTTSS-EEE
T ss_pred EEECCCCCE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc---eeEEecCCCceEEEEEECCCCC-EEE
Confidence 999987764 66677888899999999999999999999999999987653 4667778888999999999995 566
Q ss_pred eecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
+++ .|+.|++||+++++.+..+..+ .+|.+++|+|++++|+++.. |+.|++||+++++.+..+.+|...|.
T Consensus 181 sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 181 SGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD------DGYIKIYDVQHANLAGTLSGHASWVL 252 (321)
T ss_dssp EEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT------TSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC------CCeEEEEECCCcceeEEEcCCCCceE
Confidence 665 8999999999999999988754 67999999999999998854 99999999999999999999999999
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|+|++++|++++.||+|++||+.+++.+..+.+|.+.|.+++|+|.
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 301 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN 301 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=308.99 Aligned_cols=280 Identities=15% Similarity=0.234 Sum_probs=242.8
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++|+|++ +++++.|+.|++||+.+++... .+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+
T Consensus 16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 7888999864 7778889999999999887644 45588999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.+|...|.+++|+| ++.+|++|+.|++|++||++++......+.+|...|.+++|+| ++.+|++|+.|+.|++||++.
T Consensus 94 ~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 94 EAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred eCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999999 9999999999999999999987666778889999999999999 678999999999999999876
Q ss_pred CCCCcceEEecccccceeEEEEccCC-CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeecc
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQ-FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~ 282 (364)
... .......|...+..+.|+|.. ..++++++ .|++|++||+++++++..+..+ ..|.+++|+|++++++++..
T Consensus 173 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 173 STP--NFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp SSC--SEEEECCCTTCEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CCc--cceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC
Confidence 543 122234566789999998742 25777776 8999999999999999998755 77999999999999998854
Q ss_pred CCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC--EEEEEeCCCcEEEEEeeC
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL--TVVSAAADETLRFWEAFG 341 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~vw~~~~ 341 (364)
|+.|++||..+++.+..+..|...+.+++|+|++. ++++|+.| .+.+|++..
T Consensus 249 ------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 249 ------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp ------TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred ------CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 99999999999999999999999999999999875 57777655 567787654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=340.29 Aligned_cols=299 Identities=18% Similarity=0.276 Sum_probs=253.8
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eee
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIR 123 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~ 123 (364)
...+++|+|++ .++.+.++.|++|++.+++... .+.+|...|++++|+|+|++||+|+.||+|+|||+.+++ ...
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~--~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTE--IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCe--EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence 36678899864 7777778899999998776543 455999999999999999999999999999999997543 445
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCC----CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEE
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQD----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVH 198 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 198 (364)
.+.+|.+.|.+++|+| +++.|++++.+ +.|++||. +. ....+.+|...|.+++|+|++. .|++++.|++|+
T Consensus 98 ~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd~--~~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~ 173 (611)
T 1nr0_A 98 TIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDT--GT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 173 (611)
T ss_dssp EEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTT--CC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred eecccCCceEEEEECC-CCCEEEEEECCCCceeEEEEeeC--CC-CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEE
Confidence 7788999999999999 99999988865 46888874 33 2556789999999999999986 699999999999
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------cCCCeEEEEE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------TKAQICGLEW 270 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~ 270 (364)
+||... .+....+.+|...|.+++|+|++ .++++++ .|++|++||+.+++.+..+. +...|.+++|
T Consensus 174 lwd~~~---~~~~~~l~~H~~~V~~v~fspdg-~~las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~ 247 (611)
T 1nr0_A 174 IFEGPP---FKFKSTFGEHTKFVHSVRYNPDG-SLFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247 (611)
T ss_dssp EEETTT---BEEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred EEECCC---CeEeeeeccccCceEEEEECCCC-CEEEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE
Confidence 999765 35577889999999999999998 5677766 89999999999999888873 5578999999
Q ss_pred cCCccceeeeccCCccCCCCeEEEeeCCCCceee-------------------------------------------ecc
Q 040533 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG-------------------------------------------ELQ 307 (364)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~-------------------------------------------~~~ 307 (364)
+|++++|+++.. |+.|++||+.+++.+. .+.
T Consensus 248 spdg~~l~s~s~------D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 248 SPDGTKIASASA------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp CTTSSEEEEEET------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEeC------CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 999999998854 9999999998766543 334
Q ss_pred ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-eccCCceeeeeeccC
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF-VSHLDGLLSLKVSPI 363 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~sp~ 363 (364)
+|...|++++|+|+|++|++++.||+|++||+.+++....+ .+|...|.+++|+|.
T Consensus 322 gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~ 378 (611)
T 1nr0_A 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 378 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence 78889999999999999999999999999999988765554 478999999999864
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=314.99 Aligned_cols=270 Identities=18% Similarity=0.325 Sum_probs=242.3
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
...+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+| ++++|++|+.|+.|++|++
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEET
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEEC
Confidence 345669999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCc---ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 160 RVSN---NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 160 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
.+.. .....+.+|...|.++.|++++ .+++++.|+.|++||+++. +.+..+.+|...|.+++|+|++ .++++
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~-~~l~s 201 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDT-RLFVS 201 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCC---cEEEEEcCCCCceEEEEECCCC-CEEEE
Confidence 8654 2355677899999999999887 5889999999999998764 4578888999999999999988 56677
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccce
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRI 313 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i 313 (364)
++ .|+.|++||++++++...+.. ...|.+++|+|++.+++++.. |+.|++||+++++.+..+.. +...|
T Consensus 202 g~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~~~~~~v 273 (340)
T 1got_B 202 GA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD------DATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp EE--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred Ee--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC------CCcEEEEECCCCcEEEEEccCCcccce
Confidence 66 899999999999999988875 467999999999999998854 99999999999888776653 33579
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++++|+|+|++|++|+.||.|++||+.+++....+.+|.++|.+++|+|.
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d 323 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCC
Confidence 99999999999999999999999999999888899999999999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=320.27 Aligned_cols=288 Identities=17% Similarity=0.261 Sum_probs=227.0
Q ss_pred ceeecccCCCcc-EEE-EEe------CCeEEEEECCCCceeee--eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEe
Q 040533 46 YYSNMMDWGRNN-ILA-IAL------GLELYLWKQENGEVQKL--LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 46 ~~~~~~~~~~~~-~~~-~~~------~~~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 115 (364)
-.+.+++|+|++ +|+ ++. |+.|++|+..++..... ....+|...|++++|+|++.+ ++++.||+|+|||
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd 121 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWE 121 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC-
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEee
Confidence 358899999975 444 444 67899999887654322 233478899999999999865 5567899999999
Q ss_pred cCCcceee----eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEE
Q 040533 116 AETSKLIR----NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLAS 190 (364)
Q Consensus 116 ~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 190 (364)
+.+++... ...+|...|.+++|+| ++++|++|+.|+.|++||+++++. ...+.+|...|.+++|++++. ++++
T Consensus 122 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~~~~~~~s 199 (357)
T 4g56_B 122 ILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCVAACPGKDTIFLS 199 (357)
T ss_dssp -------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred ccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCceeee
Confidence 98876543 2347999999999999 999999999999999999987764 677889999999999999874 7899
Q ss_pred EeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEE
Q 040533 191 GGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLE 269 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~ 269 (364)
++.|+.|++||+++.+... ...+..+...+.+++|+|++..++++++ .|+.|++||+++++.+..+..+ ..|.+++
T Consensus 200 ~~~dg~v~~wd~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 200 CGEDGRILLWDTRKPKPAT-RIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EETTSCEEECCTTSSSCBC-BCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred eccCCceEEEECCCCceee-eeeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEEEE
Confidence 9999999999998764422 2233456778999999999888999887 8999999999999988888654 7799999
Q ss_pred EcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-CCCEEEEEeCCCcEEEEEeeCCCCCc
Q 040533 270 WNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-DGLTVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 270 ~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
|+|++. +|+++. .|+.|+|||+++++.+..+ +|.+.|++++|+| ++.+|++++.||+|++|++.+.....
T Consensus 277 ~sp~~~~~lasgs------~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 277 YSYHSSPFLASIS------EDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp ECSSSSCCEEEEE------TTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred EcCCCCCEEEEEe------CCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence 999985 566664 4999999999998877655 7999999999998 79999999999999999997654443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=312.96 Aligned_cols=283 Identities=19% Similarity=0.319 Sum_probs=224.7
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeee-cC-CCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-------
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKV-TG-EDDFPTSISWSQDAKTLAVGYMASKLQLWDAET------- 118 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~------- 118 (364)
+.+++|+++.+++++.|+.|++||+.++.......+ .+ |...|.+++|+|++++|++|+.|++|+|||+..
T Consensus 17 v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~ 96 (330)
T 2hes_X 17 IWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFE 96 (330)
T ss_dssp EEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CC
T ss_pred eeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccc
Confidence 778888888777888999999999987643333333 24 999999999999999999999999999999853
Q ss_pred cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 119 SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
.+.+..+.+|...|.+++|+| ++++|++|+.|++|++||++... .....+.+|...|.+++|+|++.+|++++.|+
T Consensus 97 ~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 175 (330)
T 2hes_X 97 MDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175 (330)
T ss_dssp CEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred ceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 345677889999999999999 99999999999999999995332 34566788999999999999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEccCCC-cEEEeecCCCCCeEEEEECCCC--------eEEEEEe--cCCC
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF-NVLASGGGTQDGCIKIWNVQKG--------TCIHSVD--TKAQ 264 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~--------~~~~~~~--~~~~ 264 (364)
.|++||.+... .+++..+.+|...|.+++|+|++. ..+++++ .|++|++||+.++ .+...+. +...
T Consensus 176 ~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 176 TVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp CEEEEEEETTE-EEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred eEEEEECCCCC-eeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 99999976532 245778889999999999999842 5677776 8999999998754 3334443 4577
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc--eee-ecccccc-ceeEEeecC--CCCEEEEEeCCCcEEEEE
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT--KWG-ELQHQTS-RILELSQSP--DGLTVVSAAADETLRFWE 338 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~--~~~-~~~~~~~-~i~~i~~~~--~~~~l~~~~~dg~i~vw~ 338 (364)
|.+++|++++ .++++.. |+.|++|+..+++ ... ...+|.. .|.+++|+| ++++|++|+.||+|++|+
T Consensus 253 v~~v~~s~~~-~l~s~~~------dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 253 VYNVAWGFNG-LIASVGA------DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp EEEEEECTTS-CEEEEET------TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC-EEEEEeC------CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 9999999766 6666643 9999999998763 332 3356776 899999999 789999999999999999
Q ss_pred eeC
Q 040533 339 AFG 341 (364)
Q Consensus 339 ~~~ 341 (364)
+..
T Consensus 326 ~~~ 328 (330)
T 2hes_X 326 LEK 328 (330)
T ss_dssp C--
T ss_pred ecc
Confidence 865
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-45 Score=311.04 Aligned_cols=279 Identities=18% Similarity=0.260 Sum_probs=233.1
Q ss_pred eecccC-----CC-c--cEEEEEeCCeEEEEECCCCce-----eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEE
Q 040533 48 SNMMDW-----GR-N--NILAIALGLELYLWKQENGEV-----QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLW 114 (364)
Q Consensus 48 ~~~~~~-----~~-~--~~~~~~~~~~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 114 (364)
+.+++| ++ + .+++++.|+.|++||+.+.+. .....+.+|...|.+++|+|++.++++|+.|++|++|
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lw 103 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW 103 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEE
T ss_pred hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 566665 43 3 377788899999999876531 2344567999999999999999999999999999999
Q ss_pred ecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee--eeecccCcEEEEEEcCCC-------
Q 040533 115 DAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS--RINAHTAEVCGLKWSNEG------- 185 (364)
Q Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~------- 185 (364)
|+.+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+..... .. ....|...|.+++|+|++
T Consensus 104 d~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (343)
T 2xzm_R 104 DLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK-FSSAEKENHSDWVSCVRYSPIMKSANKVQ 181 (343)
T ss_dssp ETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE-EECCTTTSCSSCEEEEEECCCCCSCSCCC
T ss_pred ECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce-eeeecccCCCceeeeeeeccccccccccC
Confidence 9999999999999999999999999 999999999999999999973321 11 123688899999999986
Q ss_pred ---CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-CCeEEEEEec
Q 040533 186 ---NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDT 261 (364)
Q Consensus 186 ---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~ 261 (364)
.+|++++.|+.|++||.. .+....+.+|...|.+++|+|++. ++++++ .|+.|++||+. .......+..
T Consensus 182 ~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs--~dg~v~iwd~~~~~~~~~~~~~ 254 (343)
T 2xzm_R 182 PFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGK-YIATGG--KDKKLLIWDILNLTYPQREFDA 254 (343)
T ss_dssp SSCCEEEEEETTSEEEEEETT----TEEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEESSCCSSCSEEEEC
T ss_pred CCCCEEEEEcCCCEEEEEcCC----CceeEEEcCccccceEEEECCCCC-EEEEEc--CCCeEEEEECCCCcccceeecC
Confidence 789999999999999943 245677888999999999999984 566665 89999999994 4455556666
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee--ecc-----------ccccceeEEeecCCCCEEEEE
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG--ELQ-----------HQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~-----------~~~~~i~~i~~~~~~~~l~~~ 328 (364)
...+.+++|+|++.+++++. |+.|++|++.+++... .+. +|...|.+++|+|+|++|++|
T Consensus 255 ~~~v~~v~~sp~~~~la~~~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVGT-------DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp SSCEEEEEECSSSCEEEEEE-------SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEC-------CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 77899999999999887664 8889999998766543 333 677889999999999999999
Q ss_pred eCCCcEEEEEeeCC
Q 040533 329 AADETLRFWEAFGP 342 (364)
Q Consensus 329 ~~dg~i~vw~~~~~ 342 (364)
+.||.|++|++.++
T Consensus 328 ~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 328 FTDGVIRTFSFETS 341 (343)
T ss_dssp ETTSEEEEEEEEEE
T ss_pred cCCceEEEEEEEcc
Confidence 99999999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=308.79 Aligned_cols=271 Identities=17% Similarity=0.312 Sum_probs=242.0
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+|.+.|++++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+| ++.+|++|+.|+.+++|++.
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECC
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEe
Confidence 45669999999999999999999999999999999999999999999999999999999 99999999999999999986
Q ss_pred cCc-----ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC-CcEE
Q 040533 161 VSN-----NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ-FNVL 234 (364)
Q Consensus 161 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 234 (364)
... .....+..|...|.+++|+|++..|++++.|++|++||+++. +.+..+.+|...|.+++|+|+. ..++
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 432 234566789999999999999999999999999999998764 4588888999999999998853 2677
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc--cc
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ--TS 311 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~ 311 (364)
++++ .|+.|++||+++++++..+.. ...|.+++|+|++.+++++.. |+.|++||++..+.+..+..+ ..
T Consensus 214 ~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 214 VSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD------DATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEEcCCCccc
Confidence 7776 899999999999999988865 477999999999999998854 999999999998877666543 34
Q ss_pred ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 312 RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 312 ~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|||.
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd 337 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCC
Confidence 7899999999999999999999999999999888888999999999999995
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=303.90 Aligned_cols=271 Identities=21% Similarity=0.390 Sum_probs=242.0
Q ss_pred eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 79 KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 79 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
....+.+|...|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+| ++++|++++.|+.|++||
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEE
Confidence 3456679999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+++. +.+..+..|..+|.+++|+|++. ++++++
T Consensus 94 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 168 (312)
T 4ery_A 94 VSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGS-LIVSSS 168 (312)
T ss_dssp TTTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred CCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---EEEEEecCCCCcEEEEEEcCCCC-EEEEEe
Confidence 987764 6678899999999999999999999999999999998764 45778888999999999999985 566665
Q ss_pred CCCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEE
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
.|+.|++||+++++.+..+.. ...+..++|+|++++++++.. |+.|++||+.+++.+..+.+|...+..+
T Consensus 169 --~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 240 (312)
T 4ery_A 169 --YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL------DNTLKLWDYSKGKCLKTYTGHKNEKYCI 240 (312)
T ss_dssp --TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET------TTEEEEEETTTTEEEEEECSSCCSSSCC
T ss_pred --CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC------CCeEEEEECCCCcEEEEEEecCCceEEE
Confidence 899999999999988877743 357999999999999998855 9999999999999999998887654332
Q ss_pred --e-ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 317 --S-QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 317 --~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
. ..+++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|.
T Consensus 241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290 (312)
T ss_dssp CEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc
Confidence 3 3467889999999999999999999999999999999999999995
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=312.21 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=220.2
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-----------cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-----------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKS 153 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 153 (364)
.|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+| + +.|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d-~~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-E-RGILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-T-TEEEEEETTSE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC-C-CeEEEEECCCE
Confidence 4667799999999999998887 77788886321 111122233667899999998 6 46889999999
Q ss_pred EEEEEcccCccee---eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC
Q 040533 154 IINHDVRVSNNVT---SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230 (364)
Q Consensus 154 i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (364)
|++||+++++... ....+|...|++++|+|++++|++|+.|+.|++||+++. +.+..+.+|...|.+++|+|++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~---~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ---VVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSSC
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCcCCceEEEEecCCC
Confidence 9999998876432 234589999999999999999999999999999998764 5688899999999999999999
Q ss_pred CcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
..++++++ .|++|++||+++++....+.. ...+.+++|+|++. ++++|. .|+.|++||+++++++..+
T Consensus 182 ~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~------~dg~v~~wd~~~~~~~~~~ 253 (344)
T 4gqb_B 182 DSVFLSCS--EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD------ENGTVSLVDTKSTSCVLSS 253 (344)
T ss_dssp TTEEEEEE--TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE------TTSEEEEEESCC--CCEEE
T ss_pred CCceeeec--cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec------cCCcEEEEECCCCcEEEEE
Confidence 88888887 899999999999998877643 34689999999654 556664 4999999999999999999
Q ss_pred cccccceeEEeecCCC-CEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 307 QHQTSRILELSQSPDG-LTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 307 ~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+|...|++++|+|++ ++|++|+.||+|+|||+.+++. ..+.+|.+.|++++|||.
T Consensus 254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEEEEECSS
T ss_pred cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEEEEEeCC
Confidence 9999999999999998 5899999999999999988764 456799999999999995
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=310.77 Aligned_cols=281 Identities=21% Similarity=0.357 Sum_probs=235.3
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeec----------------CCCCCceEEEEcCCCCEEEEEecCC
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVT----------------GEDDFPTSISWSQDAKTLAVGYMAS 109 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~~~~~dg 109 (364)
.+.+++|+|+ .+++.+.++.+++|+..+++....+... .+...|.+++|+|++++|++|+.||
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 4788999996 4777778899999999988764433211 1223489999999999999999999
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEE
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLL 188 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 188 (364)
.|+|||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+++++. ...+ .+...+.+++|+| ++++|
T Consensus 146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQC-SLTL-SIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECSTTCCEE
T ss_pred eEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCee-EEEE-EcCCCcEEEEEECCCCCEE
Confidence 999999999999999999999999999999 999999999999999999987764 3333 4667899999999 89999
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEe-------cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-------
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRF-------RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT------- 254 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------- 254 (364)
++++.|+.|++||+++.. .+..+ .+|...|.+++|+|++. ++++++ .|+.|++||+++..
T Consensus 223 ~~~s~d~~v~iwd~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s--~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 223 AAGSLDRAVRVWDSETGF---LVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp EEEETTSCEEEEETTTCC---EEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC-----------
T ss_pred EEEcCCCcEEEEECCCCc---EEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCCCcccccC
Confidence 999999999999987653 24333 56889999999999984 566665 89999999997642
Q ss_pred -----EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC------CC
Q 040533 255 -----CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP------DG 322 (364)
Q Consensus 255 -----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~------~~ 322 (364)
+...+. +...|.+++|+|++.+++++.. |+.|++||..+++++..+.+|...|.+++|++ ++
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeC------CCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC
Confidence 333443 4467999999999999998854 99999999999999999999999999999876 68
Q ss_pred CEEEEEeCCCcEEEEEeeCC
Q 040533 323 LTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~ 342 (364)
++|++|+.||+|++|++...
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEECCCCcEEECccccc
Confidence 89999999999999998764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=317.23 Aligned_cols=295 Identities=18% Similarity=0.226 Sum_probs=219.7
Q ss_pred ecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec------CCcEEEEecCCcce
Q 040533 49 NMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM------ASKLQLWDAETSKL 121 (364)
Q Consensus 49 ~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~ 121 (364)
..++..+++ ++....+.....|++..... ..|+..|++++|||||++||+|+. |+.|++|+..++..
T Consensus 9 sg~d~g~~~~~~~~~g~~~~~~w~~p~~~p------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~ 82 (357)
T 4g56_B 9 SGVDLGTENLYFQSNGSSKGSAWGRPVTAP------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP 82 (357)
T ss_dssp -------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred cCCCCCccceEEecCCCccccccCCCCCCc------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc
Confidence 345555555 34445567788898764432 378999999999999999999997 77899999877654
Q ss_pred e----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee---eeeecccCcEEEEEEcCCCCEEEEEeCC
Q 040533 122 I----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT---SRINAHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 122 ~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
. .....|...|.+++|+| ++. +++++.||+|++||+.+++... ....+|...|.+++|+|++++|++++.|
T Consensus 83 ~~~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 83 NESLCTAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp CGGGCSEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ceeEecccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 3 33456889999999999 765 5567889999999998775422 2344799999999999999999999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe---cCCCeEEEEEc
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---TKAQICGLEWN 271 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~ 271 (364)
+.|++||+++. +.+..+.+|...|.+++|+|++..++++++ .|+.|++||++++++...+. ....+.+++|+
T Consensus 161 g~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~s 235 (357)
T 4g56_B 161 FSVKVWDLSQK---AVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWH 235 (357)
T ss_dssp SCEEEEETTTT---EEEEEECCCSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEEC
T ss_pred CeEEEEECCCC---cEEEEEcCCCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhh
Confidence 99999998764 558888999999999999999887888876 89999999999988776554 33569999999
Q ss_pred CCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 272 RHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 272 ~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
|++. +++++. .|+.|++||+++++.+..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++.+.. .
T Consensus 236 p~~~~~la~g~------~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~ 308 (357)
T 4g56_B 236 PEKDDTFACGD------ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-L 308 (357)
T ss_dssp TTSTTEEEEEE------SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-C
T ss_pred hcccceEEEee------cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-C
Confidence 9865 555654 39999999999999999999999999999999987 5799999999999999998876554 4
Q ss_pred ccCCceeeeeeccC
Q 040533 350 SHLDGLLSLKVSPI 363 (364)
Q Consensus 350 ~~~~~v~~~~~sp~ 363 (364)
+|.+.|++|+|||.
T Consensus 309 ~H~~~V~~vafsP~ 322 (357)
T 4g56_B 309 SHRDFVTGVAWSPL 322 (357)
T ss_dssp CCSSCEEEEEECSS
T ss_pred CCCCCEEEEEEeCC
Confidence 79999999999983
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-43 Score=295.86 Aligned_cols=278 Identities=22% Similarity=0.446 Sum_probs=239.2
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++|+..+++.... +.+|...|.+++|+|++++|++|+.||.|++||+++++.+..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 102 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh--hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 37788888854 67778899999999998876544 458999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...|.+++|+| ++++|++|+.|+.|++||+++++. ...+..|..+|.+++|+|++++|++++.|+.|++||+++
T Consensus 103 ~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 103 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180 (312)
T ss_dssp EECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999 999999999999999999987764 667788999999999999999999999999999999876
Q ss_pred CCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-C---eEEEEEcCCccceee
Q 040533 205 MSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-Q---ICGLEWNRHHKEILS 279 (364)
Q Consensus 205 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~---v~~~~~~~~~~~l~~ 279 (364)
.. .+..+ ..+...+..++|+|++.. +++++ .|+.|++||+++++.+..+..+. . +......+++.++++
T Consensus 181 ~~---~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 181 GQ---CLKTLIDDDNPPVSFVKFSPNGKY-ILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp CC---EEEEECCSSCCCEEEEEECTTSSE-EEEEE--TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred Cc---eeeEEeccCCCceEEEEECCCCCE-EEEEc--CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 53 34443 345678999999999955 45554 79999999999999988886542 2 222333467778887
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe--CCCcEEEEEee
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA--ADETLRFWEAF 340 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~vw~~~ 340 (364)
+. .|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 255 g~------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GS------EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CC------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EC------CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 74 499999999999999999999999999999999999999987 69999999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=321.91 Aligned_cols=290 Identities=18% Similarity=0.352 Sum_probs=246.6
Q ss_pred eeecccCCCcc--EEEE-----------EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEE
Q 040533 47 YSNMMDWGRNN--ILAI-----------ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQL 113 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~-----------~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 113 (364)
.+.+++|+|++ +++. +.|+.|++||+.+++.........|...|.+++|+|++++|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 46789999963 5555 4688999999998864333333368899999999999999999999999999
Q ss_pred EecCC----cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc------cee--eeeecccCcEEEEEE
Q 040533 114 WDAET----SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------NVT--SRINAHTAEVCGLKW 181 (364)
Q Consensus 114 w~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~--~~~~~~~~~v~~~~~ 181 (364)
||+.+ .+.+..+.+|...|.+++|+|.++++|++++.||.|++||+.+.. ... .....|...|.+++|
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 99987 457788889999999999999338999999999999999998775 222 234578899999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc------ccceeEEEEccCCCcEEEeecCCCCC---eEEEEECC
Q 040533 182 SNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH------RAAVKALAWCPYQFNVLASGGGTQDG---CIKIWNVQ 251 (364)
Q Consensus 182 ~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~g~~d~---~i~i~d~~ 251 (364)
+|+ +.+|++++.|+.|++||++.. +.+..+..+ ...|.+++|+|++..++++++ .|+ .|++||++
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAK---KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT--GSDNDPSILIWDLR 248 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTT---EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE--CCSSSCCCCEEETT
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCC---CcceEEeccccccccCCceEEEEECCCCCCEEEEEE--CCCCCceEEEEeCC
Confidence 998 789999999999999998764 346666655 788999999999877888876 787 99999999
Q ss_pred CC-eEEEEEe--cCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEE
Q 040533 252 KG-TCIHSVD--TKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVV 326 (364)
Q Consensus 252 ~~-~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~ 326 (364)
++ .++..+. +...+.+++|+| ++.+++++.. |+.|++||+.+++++..+..|...|.+++|+|++ .+|+
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR------DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA 322 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES------SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC------CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence 86 5566665 557899999999 8999998854 9999999999999999999999999999999999 8999
Q ss_pred EEeCCCcEEEEEeeCCCCCcc
Q 040533 327 SAAADETLRFWEAFGPSGSGD 347 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~ 347 (364)
+++.||.|++|++.+......
T Consensus 323 s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 323 CASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp ECCSSSEEEEEESCCCCCSSC
T ss_pred EEecCCcEEEEEccCCCCCcc
Confidence 999999999999988765443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-44 Score=306.21 Aligned_cols=275 Identities=20% Similarity=0.350 Sum_probs=229.9
Q ss_pred eeeeecCCCC-CceEEEEcCCCCEEEEEecCCcEEEEecCCcceee---eeecCCCcEEEEEeecCCCCEEEEeeCCCcE
Q 040533 79 KLLKVTGEDD-FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR---NLEGHDKRVATASWNHWNGHILTSGSQDKSI 154 (364)
Q Consensus 79 ~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 154 (364)
.+..+.+|.. .|.+++|+|+|++||+|+.|+.|+|||+.++.... ...+|...|.+++|+| ++++|++|+.|+.+
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATT 85 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcE
Confidence 3455668887 99999999999999999999999999998876432 2357999999999999 99999999999999
Q ss_pred EEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcE
Q 040533 155 INHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 155 ~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 233 (364)
++||+.... .....+.+|...|.+++|+|++++|++++.|+.|++||++.......+..+.+|...|.+++|+|++. +
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~ 164 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-L 164 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-C
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-E
Confidence 999988664 34567889999999999999999999999999999999987655566777889999999999999985 5
Q ss_pred EEeecCCCCCeEEEEECCCCeE--EEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC----------
Q 040533 234 LASGGGTQDGCIKIWNVQKGTC--IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM---------- 300 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~---------- 300 (364)
+++++ .|+.|++||.++++. ...+.. ...|.+++|+|++++|+++.. |+.|++|+....
T Consensus 165 l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~------D~~v~iW~~~~~~~~~~~~~~~ 236 (345)
T 3fm0_A 165 LASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD------DRTVRIWRQYLPGNEQGVACSG 236 (345)
T ss_dssp EEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEEEECTTCTTCCCCC-
T ss_pred EEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC------CCeEEEeccccCCCCccceeec
Confidence 56655 899999999988754 345543 478999999999999998854 999999996322
Q ss_pred -----ceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc---------ceeccCCceeeeeeccC
Q 040533 301 -----TKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG---------DFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 301 -----~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~---------~~~~~~~~v~~~~~sp~ 363 (364)
+++..+.+ |...|.+++|+|++..|++++.|+.|++|+........ ...+|.+.|++++|+|.
T Consensus 237 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 314 (345)
T 3fm0_A 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314 (345)
T ss_dssp --CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS
T ss_pred cCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCC
Confidence 22333443 78899999999999999999999999999998654221 12478999999999995
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=301.30 Aligned_cols=284 Identities=22% Similarity=0.374 Sum_probs=246.9
Q ss_pred eeecccCCCc--c-EEEEEeCCeEEEEECCCCce---eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 47 YSNMMDWGRN--N-ILAIALGLELYLWKQENGEV---QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 47 ~~~~~~~~~~--~-~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
.+++++|+|+ + +++++.|+.|++||+.+.+. .....+.+|...|.+++|+|++++|++|+.|+.|++|+.....
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~ 119 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT 119 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccc
Confidence 4888999975 3 56788899999999987643 3345567999999999999999999999999999999999998
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC--CEEEEEeCCCeEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG--NLLASGGDDNLVH 198 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~ 198 (364)
.......+...+..+.+++ ++.+|++++.|+.+++||+...........+|...+..++|++++ .++++++.|+.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~ 198 (340)
T 4aow_A 120 TTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198 (340)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred eeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEE
Confidence 8888888889999999999 899999999999999999987766666677899999999999864 5789999999999
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcccee
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 278 (364)
+||++.. +.+..+.+|...|.+++|+|++ .++++++ .|+.|++||+++.+.+..+..+..+.++.|+|++.+++
T Consensus 199 i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 199 VWNLANC---KLKTNHIGHTGYLNTVTVSPDG-SLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272 (340)
T ss_dssp EEETTTT---EEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEE
T ss_pred EEECCCC---ceeeEecCCCCcEEEEEECCCC-CEEEEEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceee
Confidence 9998764 4578888999999999999998 4666665 89999999999999999999999999999999987776
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeecc---------ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQ---------HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
++. |+.|++||++++..+..+. .|...|++++|+|+|++|++|+.||.|+|||+.++++
T Consensus 273 ~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 273 AAT-------GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp EEE-------TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred ccC-------CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 553 9999999999877665543 5788999999999999999999999999999998763
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=322.22 Aligned_cols=294 Identities=22% Similarity=0.437 Sum_probs=255.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++||.... . ...+.+|...|.+++|+|++++|++++.||.|++||... ..+..
T Consensus 264 ~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~--~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~ 339 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-L--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQT 339 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSC-E--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-E--EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEE
Confidence 36778888863 677788999999997543 3 334568999999999999999999999999999999764 55667
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...+.+++|+| ++++|++++.||.|++||.. + .....+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 340 ~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~- 415 (577)
T 2ymu_A 340 LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 415 (577)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-
T ss_pred EeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-
Confidence 788999999999999 99999999999999999964 3 3467788999999999999999999999999999999953
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.+.+..+.+|...|.+++|+|++. ++++++ .|+.|++||.. ++.+..+. +...+.+++|+|++++++++..
T Consensus 416 ---~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~--~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~- 487 (577)
T 2ymu_A 416 ---GQLLQTLTGHSSSVWGVAFSPDDQ-TIASAS--DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD- 487 (577)
T ss_dssp ---CCEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEET-
T ss_pred ---CCEEEEecCCCCCeEEEEECCCCC-EEEEEc--CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-
Confidence 345778889999999999999985 556655 79999999974 55666654 4578999999999999998854
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|+.|++||. +++.+..+.+|...|++++|+|+|++|++++.||.|++||. +++.+..+.+|.+.|++++|+|.
T Consensus 488 -----d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 488 -----DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp -----TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred -----CCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence 999999994 68889999999999999999999999999999999999996 56778888999999999999995
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=299.52 Aligned_cols=302 Identities=14% Similarity=0.191 Sum_probs=256.9
Q ss_pred CCCcEEeeCCCCCCCcceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec
Q 040533 30 FQKEARILDAPNLRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM 107 (364)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 107 (364)
.....+......+.. .+.+++|+|++ +++++.|+.|++||+.+++... .+.+|...|.+++|+|++++|++++.
T Consensus 19 ~G~~~~~~~l~~h~~--~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 19 QGSHMKAIKLTGHER--PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG--TLDGHTGTIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp SCCSEEEEEEECCSS--CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred eccccccEEEEEeec--eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--hhhhcCCcEEEEEEcCCCCEEEEEeC
Confidence 333444433334333 37888888853 6667789999999999887644 45589999999999999999999999
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC-----CcEEEEEcccCcc----------eeeeeecc
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD-----KSIINHDVRVSNN----------VTSRINAH 172 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~----------~~~~~~~~ 172 (364)
||.|++||+.+++.+..+. +...+.+++|+| ++.++++++.+ |.|.+||+..... ....+..|
T Consensus 95 dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCeEEEEECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 9999999999999998888 889999999999 99999999998 9999999987642 23344455
Q ss_pred cC--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 173 TA--EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 173 ~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
.. .+.+++|+|++++|++++.||.|++||++.. ...+..+..|...|.+++|+|++. ++++++ .|+.|++||+
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~v~d~ 247 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLT-YFITSS--RDTNSFLVDV 247 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT--TEEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEET
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--cEeEEEEecCCCceeEEEECCCCC-EEEEec--CCceEEEEEC
Confidence 55 8999999999999999999999999998763 345777888999999999999985 455554 7999999999
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC--------------eEEEeeCCCCceeeeccccccceeEE
Q 040533 251 QKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ--------------KLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~--------------~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
++++.+..+.....+..++|+|++++++++.. ++ .+++||..+++.+..+.+|...|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~ 321 (369)
T 3zwl_B 248 STLQVLKKYETDCPLNTAVITPLKEFIILGGG------QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV 321 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSSSEEEEEEC------CC-------------CEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCceeeeecCCCCceeEEecCCCceEEEeec------CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEE
Confidence 99999999998899999999999999998864 44 89999999999999999999999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCcce
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 348 (364)
+|+|++++|++++.||.|++|++..+.....+
T Consensus 322 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 322 AISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred EECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 99999999999999999999999876544433
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=327.34 Aligned_cols=279 Identities=22% Similarity=0.346 Sum_probs=239.2
Q ss_pred eecccCCCcc---EEEEEeCCeEEEEECCCCce---eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRNN---ILAIALGLELYLWKQENGEV---QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.+++|++++ +++++.|+.|++|++.+... .....+.+|...|.+++|+|++++|++|+.||.|+|||+.+++.
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~ 464 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS 464 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 7788888642 66788899999999976432 22345669999999999999999999999999999999999999
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecccCcEEEEEEcCCC--CEEEEEeCCCeE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAHTAEVCGLKWSNEG--NLLASGGDDNLV 197 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i 197 (364)
...+.+|...|.+++|+| ++++|++|+.|++|++||........ ....+|...|.+++|+|++ ..+++++.|+.|
T Consensus 465 ~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 543 (694)
T 3dm0_A 465 TRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543 (694)
T ss_dssp EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred eeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeE
Confidence 999999999999999999 99999999999999999986443211 1224688899999999986 589999999999
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccce
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI 277 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l 277 (364)
++||++.. +....+.+|.+.|.+++|+|++ .++++++ .|+.|++||+++++.+..+..+..+.+++|+|++.++
T Consensus 544 ~vwd~~~~---~~~~~~~~h~~~v~~v~~spdg-~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l 617 (694)
T 3dm0_A 544 KVWNLSNC---KLRSTLAGHTGYVSTVAVSPDG-SLCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWL 617 (694)
T ss_dssp EEEETTTC---CEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEE
T ss_pred EEEECCCC---cEEEEEcCCCCCEEEEEEeCCC-CEEEEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEE
Confidence 99998764 4577888999999999999998 5666766 8999999999999999888888899999999999988
Q ss_pred eeeccCCccCCCCeEEEeeCCCCceeeeccccc-------------------cceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-------------------SRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-------------------~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+++. ++.|++||+.+++.+..+..+. ..+++++|+|+|++|++|+.||.|++|+
T Consensus 618 ~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 618 CAAT-------EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp EEEE-------TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEc-------CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 8765 7789999999988877664321 1378899999999999999999999999
Q ss_pred ee
Q 040533 339 AF 340 (364)
Q Consensus 339 ~~ 340 (364)
+.
T Consensus 691 i~ 692 (694)
T 3dm0_A 691 IG 692 (694)
T ss_dssp C-
T ss_pred cc
Confidence 85
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=311.92 Aligned_cols=272 Identities=15% Similarity=0.265 Sum_probs=235.5
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
...+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+| ++++|++|+.|+.+++||+
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEEC
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEEC
Confidence 345669999999999999999999999999999999999999999999999999999999 9999999999999999998
Q ss_pred ccCc------ceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEe-----cccccceeEEEEc
Q 040533 160 RVSN------NVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRF-----RDHRAAVKALAWC 227 (364)
Q Consensus 160 ~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~ 227 (364)
.+.. .....+.+|.+.+.++.|+|+ +..|++|+.|++|++||++++. .+..+ .+|...|.+++|+
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~---~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ---RISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC---EEEEECCCSSSSCCSCEEEEEEC
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc---EEEEeecccCCCCccCeEEEEee
Confidence 7532 234567789999999999996 4579999999999999988754 34444 5688999999998
Q ss_pred cCCCcEEEeecCCCCCeEEEEECC-CCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee
Q 040533 228 PYQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305 (364)
Q Consensus 228 ~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 305 (364)
+.+..++++++ .|+.|++||++ .++.+..+.. ...|.+++|+|++++++++.. |+.|++||+++++.+..
T Consensus 215 ~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 215 SLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD------DGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp SSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS------SSCEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC------CCeEEEEECCCCcEEEE
Confidence 86667888877 89999999998 4566666654 478999999999999998854 99999999999988877
Q ss_pred ccccc-------cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce----eccCCceeeeeeccC
Q 040533 306 LQHQT-------SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF----VSHLDGLLSLKVSPI 363 (364)
Q Consensus 306 ~~~~~-------~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----~~~~~~v~~~~~sp~ 363 (364)
+..+. ..|++++|+|+|++|++|+.||.|++||+..++....+ .+|.+.|++++|+|.
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC
Confidence 65432 24899999999999999999999999999888776555 579999999999995
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=305.87 Aligned_cols=282 Identities=14% Similarity=0.191 Sum_probs=243.3
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCc----eeeeeeecCCCCCceEEEEcCC----C---CEEEEEecCCcEEEEe
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGE----VQKLLKVTGEDDFPTSISWSQD----A---KTLAVGYMASKLQLWD 115 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~v~~~~~s~~----~---~~l~~~~~dg~i~iw~ 115 (364)
.+.+++|+|+.+++++.|+.|++||+.+++ ......+.+|...|.+++|+|+ + ++|++++.||.|++||
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~ 97 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 97 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEE
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEE
Confidence 488899999778888899999999999887 2234455689999999999999 9 9999999999999999
Q ss_pred cCCcce-----eeeeecC-----CCcEEEEEee----cCCCCE-EEEeeCCCcEEEEEccc------Ccceee-----ee
Q 040533 116 AETSKL-----IRNLEGH-----DKRVATASWN----HWNGHI-LTSGSQDKSIINHDVRV------SNNVTS-----RI 169 (364)
Q Consensus 116 ~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~~~d~~~------~~~~~~-----~~ 169 (364)
+.+++. ...+..| ...|.+++|+ | ++++ |++++.||.|++||++. ... .. .+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 175 (397)
T 1sq9_A 98 ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTLEL 175 (397)
T ss_dssp EEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEEEE
T ss_pred ccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccce-eeccCccee
Confidence 998887 7888888 5899999999 8 8999 99999999999999987 443 22 44
Q ss_pred -------ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc---c---ccceeEEEEccCCCcEEEe
Q 040533 170 -------NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD---H---RAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 170 -------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~ 236 (364)
..|...|.+++|+|++ ++++++.|+.|++||++.. +.+..+.. | ...|.+++|+|++. ++++
T Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~ 250 (397)
T 1sq9_A 176 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAI 250 (397)
T ss_dssp EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTT-EEEE
T ss_pred eeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC---ceeEEEeccccccccCCccceEEECCCCC-EEEE
Confidence 3488899999999999 9999999999999998764 45777777 8 89999999999985 5555
Q ss_pred ecCCCC---CeEEEEECCCCeEEEEEe--------------cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 237 GGGTQD---GCIKIWNVQKGTCIHSVD--------------TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 237 ~~g~~d---~~i~i~d~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
++ .| +.|++||+++++.+..+. +...+.+++|+|++++++++.. |+.|++||+.+
T Consensus 251 ~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~ 322 (397)
T 1sq9_A 251 AH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW------DGKLRFWDVKT 322 (397)
T ss_dssp EE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET------TSEEEEEETTT
T ss_pred Ee--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC------CCeEEEEEcCC
Confidence 54 68 999999999999998886 4578999999999999998854 99999999999
Q ss_pred Cceeeecc------cc---------------ccceeEEeecCCC----------CEEEEEeCCCcEEEEEeeCCC
Q 040533 300 MTKWGELQ------HQ---------------TSRILELSQSPDG----------LTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 300 ~~~~~~~~------~~---------------~~~i~~i~~~~~~----------~~l~~~~~dg~i~vw~~~~~~ 343 (364)
++.+..+. .| ...|++++|+|++ ++|++++.||.|++|++.+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999998 77 8999999999998 799999999999999998763
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=300.72 Aligned_cols=263 Identities=19% Similarity=0.379 Sum_probs=227.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCC------------------cEEEEEeecCCCCEEE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK------------------RVATASWNHWNGHILT 146 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~l~ 146 (364)
+|...|.+++|+|||++||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+| ++++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEEE
Confidence 6999999999999999999986 68999999999988877765432 499999999 999999
Q ss_pred EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEE
Q 040533 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 226 (364)
+|+.|+.|++||+.+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+++.. ....+. +...+.+++|
T Consensus 140 s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~-~~~~v~~~~~ 214 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTLS-IEDGVTTVAV 214 (393)
T ss_dssp EEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEE-CSSCEEEEEE
T ss_pred EEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe---eEEEEE-cCCCcEEEEE
Confidence 99999999999998765 466788999999999999999999999999999999987643 344443 5677999999
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
+|....++++++ .|+.|++||+++++.+..+. +...|.+++|+|++++++++.. |+.|++||+.
T Consensus 215 ~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------d~~v~~wd~~ 286 (393)
T 1erj_A 215 SPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL------DRSVKLWNLQ 286 (393)
T ss_dssp CSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET------TSEEEEEEC-
T ss_pred ECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC------CCEEEEEECC
Confidence 994446777776 89999999999998887762 3467999999999999998854 9999999997
Q ss_pred CC------------ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 299 HM------------TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 299 ~~------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+. .+...+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 53 34556778999999999999999999999999999999999999889999999999999987
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=311.87 Aligned_cols=292 Identities=15% Similarity=0.201 Sum_probs=233.2
Q ss_pred eeecccCCCc--c-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCccee
Q 040533 47 YSNMMDWGRN--N-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~--~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.+++++|+|. + +++++.||.|+|||+.+++......+.+|.+.|++++|+| ++++|++|+.||+|++||++++...
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR 200 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence 4889999983 3 5567789999999999887766777779999999999998 6899999999999999999876543
Q ss_pred eeeec--CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEEE
Q 040533 123 RNLEG--HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVHV 199 (364)
Q Consensus 123 ~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i 199 (364)
..... +...+.+++|+| ++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++. ++++++.|+.|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~i 277 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 277 (435)
T ss_dssp EEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCE
T ss_pred EEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceeeE
Confidence 33332 344678899999 9999999999999999998743 3566789999999999999875 7889999999999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-------CeEEEEEcC
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-------QICGLEWNR 272 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------~v~~~~~~~ 272 (364)
||++............+|...|.+++|+|++. ++++++ .|+.|++||+.+++....+..+. .+....|+|
T Consensus 278 wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
T 4e54_B 278 WDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354 (435)
T ss_dssp EETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred EecccccccceEEEeeeccccccceeECCCCC-eeEEEc--CCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence 99987665444555567999999999999985 556655 89999999999988777664321 244567888
Q ss_pred Cccceeeecc------CCccCCCCeEEEeeCCCCceeeecc-ccccceeEE-eecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 273 HHKEILSGHG------FSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILEL-SQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 273 ~~~~l~~~~~------~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i-~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
++..++++.. ...+.+++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++++++.
T Consensus 355 ~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 8877776532 1233456789999999999988764 677888887 6999999999876 78999999988765
Q ss_pred C
Q 040533 345 S 345 (364)
Q Consensus 345 ~ 345 (364)
.
T Consensus 434 r 434 (435)
T 4e54_B 434 R 434 (435)
T ss_dssp -
T ss_pred e
Confidence 3
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=294.07 Aligned_cols=270 Identities=23% Similarity=0.398 Sum_probs=216.7
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--ceeeee-ec-CCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--KLIRNL-EG-HDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
...+.+|.+.|.+++|+|+ +||+|+.|+.|++||+..+ +....+ .. |...|.+++|+| ++++|++|+.|++|+
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~ 83 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 3456699999999999987 9999999999999999875 344555 34 999999999999 999999999999999
Q ss_pred EEEcccC------cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-CCCcceEEecccccceeEEEEcc
Q 040533 156 NHDVRVS------NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM-SSSKCLHRFRDHRAAVKALAWCP 228 (364)
Q Consensus 156 ~~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 228 (364)
+||++.. ......+.+|...|.+++|+|++++|++++.|+.|++||++.. ...+.+..+.+|...|.+++|+|
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 9998532 1345567899999999999999999999999999999998533 33456777889999999999999
Q ss_pred CCCcEEEeecCCCCCeEEEEECCCC--eEEEEEec-CCCeEEEEEcCC--ccceeeeccCCccCCCCeEEEeeCCCC---
Q 040533 229 YQFNVLASGGGTQDGCIKIWNVQKG--TCIHSVDT-KAQICGLEWNRH--HKEILSGHGFSSSGDGQKLCLWKYPHM--- 300 (364)
Q Consensus 229 ~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~i~i~d~~~~--- 300 (364)
++ .++++++ .|++|++||..++ +++..+.. ...|.+++|+|+ +..++++. .|+.|++||+..+
T Consensus 164 ~~-~~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~D~~v~iw~~~~~~~~ 234 (330)
T 2hes_X 164 SE-ALLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS------DDSTVRVWKYMGDDED 234 (330)
T ss_dssp SS-SEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE------TTSCEEEEEEEEECTT
T ss_pred CC-CEEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe------CCCeEEEEEecCCCcc
Confidence 98 5667766 8999999999876 56667754 478999999998 66777774 4999999998754
Q ss_pred -----ceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC--CCc-ceeccCC-ceeeeeecc
Q 040533 301 -----TKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS--GSG-DFVSHLD-GLLSLKVSP 362 (364)
Q Consensus 301 -----~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~-~~~~~~~-~v~~~~~sp 362 (364)
.....+.. |...|.+++|++++ +|++++.||.|++|+..+++ ... .+.+|.. .|.+++|+|
T Consensus 235 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 235 DQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp SCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred ccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence 33444554 88999999999765 89999999999999998763 222 2346776 899999998
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=290.73 Aligned_cols=269 Identities=20% Similarity=0.272 Sum_probs=231.0
Q ss_pred eeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCC-----cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 79 KLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAET-----SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 79 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
...++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+| ++.+|++|+.|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~ 87 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDK 87 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCC
Confidence 344577999999999999965 8999999999999999864 345677889999999999999 999999999999
Q ss_pred cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC-
Q 040533 153 SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF- 231 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 231 (364)
+|++||+.+++. ...+.+|...|.+++|+|++.+|++++.|+.|++||++. ..+..+.+|...|.++.|.|...
T Consensus 88 ~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 88 TLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEEEEETTTTEE-EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECCC---
T ss_pred EEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEeccCCcEEEEEEccCCCC
Confidence 999999997764 677889999999999999999999999999999999863 45778889999999999998642
Q ss_pred ----cEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 232 ----NVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 232 ----~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
..+++++ .|+.|++||+++++....+.. ...|.+++|+|++++++++.. |+.|++||+.+++.+..+
T Consensus 163 ~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~------dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 163 DDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK------DGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp ---CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET------TCEEEEEETTTTEEEEEE
T ss_pred CCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcEEEEe
Confidence 3677776 899999999999988887764 478999999999999999854 999999999999999888
Q ss_pred cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce--------eccCCceeeeeeccC
Q 040533 307 QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF--------VSHLDGLLSLKVSPI 363 (364)
Q Consensus 307 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--------~~~~~~v~~~~~sp~ 363 (364)
..+ ..|.+++|+|++.+|++++.+ .+++|++........+ ..|...+.+++|||.
T Consensus 235 ~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 297 (319)
T 3frx_A 235 SAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297 (319)
T ss_dssp ECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTT
T ss_pred cCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCC
Confidence 754 679999999999999988765 5999998765433322 245678999999995
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=312.39 Aligned_cols=294 Identities=22% Similarity=0.450 Sum_probs=255.2
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++||... +. +..+.+|...|.+++|+|+++.|++++.|+.|++|+. +++....
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~--~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~ 298 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL--LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQT 298 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTS-CE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE--EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEE
Confidence 36778888853 77788899999999654 33 3445689999999999999999999999999999996 4677888
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...|.+++|+| +++.|++++.|+.|++||..... ...+.+|...+.+++|+|++++|++++.|+.|++||..
T Consensus 299 ~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~- 374 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQH--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 374 (577)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred EecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe--eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-
Confidence 899999999999999 99999999999999999986443 56677899999999999999999999999999999953
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.+.+..+.+|...|.+++|+|+++. +++++ .|+.|++||. +++.+..+. +...+.+++|+|++++++++..
T Consensus 375 ---~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~--~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~- 446 (577)
T 2ymu_A 375 ---GQLLQTLTGHSSSVRGVAFSPDGQT-IASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASD- 446 (577)
T ss_dssp ---CCEEEEEECCSSCEEEEEECTTSSC-EEEEE--TTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ---CCEEEEecCCCCCeEEEEECCCCCE-EEEEe--CCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcC-
Confidence 3457788889999999999999965 45554 7999999996 566666665 4578999999999999998854
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|.+.|++++|||.
T Consensus 447 -----d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 447 -----DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp -----TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT
T ss_pred -----CCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCC
Confidence 999999996 57788889999999999999999999999999999999995 56777888999999999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=305.00 Aligned_cols=298 Identities=16% Similarity=0.215 Sum_probs=245.0
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
...++|+|+ .+++++.|+.|++||..+++...... .| ..+....|+|++++|++|+.||.|++||+.+++....+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK--RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC--SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe--cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 456788885 48888899999999998876543332 44 44555578999999999999999999999999988888
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+|...|.+++|+| ++++|++++.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 136 ~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 213 (420)
T 3vl1_A 136 QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213 (420)
T ss_dssp TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence 89999999999999 999999999999999999987765 6677899999999999999999999999999999998865
Q ss_pred CCCcceEEecc---cc---------------------cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 206 SSSKCLHRFRD---HR---------------------AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 206 ~~~~~~~~~~~---~~---------------------~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
. .+..+.. +. ..+.+++|+|++ .++++++ .||.|++||+++++....+..
T Consensus 214 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 214 T---TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGH--VSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp E---EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEE--TTSCEEEEETTTCCEEEEECC
T ss_pred c---eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEc--CCCeEEEEECCCCceeEEccc
Confidence 3 3555543 33 344555567877 4556655 799999999999988877753
Q ss_pred --CCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCce-eeeccc-cccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 262 --KAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQH-QTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 262 --~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
...+.+++|+|++. +++++.. |+.|++||+++++. +..+.. |...|.++.+ +++++|++++.||.|++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYE------NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKL 360 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEET------TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEE
T ss_pred ccCCCceeEEEeCCCCCEEEEEeC------CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEE
Confidence 46799999999999 8887754 99999999998754 667766 6677888855 57889999999999999
Q ss_pred EEeeCCCC---------CcceeccCCceeeeeeccC
Q 040533 337 WEAFGPSG---------SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 337 w~~~~~~~---------~~~~~~~~~~v~~~~~sp~ 363 (364)
|++..+.. ...+..|.+.|.+++|+|.
T Consensus 361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 396 (420)
T 3vl1_A 361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD 396 (420)
T ss_dssp EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC
T ss_pred EeccCCCCCccceeccCccEEccCCcceEEEEEccC
Confidence 99987533 2344578889999999985
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=294.87 Aligned_cols=298 Identities=15% Similarity=0.216 Sum_probs=250.0
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee-
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN- 124 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~- 124 (364)
+.+++|+|++ +++++ .++.+..|...... ......+|...|++++|+|++++|++++ ||.|++||+.+++....
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~ 88 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHA--RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEE--EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCcc--ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee
Confidence 6678888865 44433 45555555443332 2333348999999999999999999998 99999999987754332
Q ss_pred --ee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 125 --LE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 125 --~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+. .|...|.+++|+| ++++|++++.||.|++||+++++. ....+..|...|.+++|+|+++++++++.|+.|++
T Consensus 89 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~ 167 (337)
T 1gxr_A 89 SQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167 (337)
T ss_dssp EEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 33 6899999999999 999999999999999999987653 34567789999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
||+++. +.+..+..|...+.+++|+|++. .+++++ .|+.|++||+++++.+..+.....+.+++|+|+++++++
T Consensus 168 ~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 168 WDLHNQ---TLVRQFQGHTDGASCIDISNDGT-KLWTGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred EeCCCC---ceeeeeecccCceEEEEECCCCC-EEEEEe--cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEE
Confidence 998764 45778888999999999999985 555554 799999999999999999988899999999999999998
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeee
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLK 359 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 359 (364)
+.. ++.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++||+.+++... ...|...|.+++
T Consensus 242 ~~~------~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~~~~~v~~~~ 313 (337)
T 1gxr_A 242 GME------SSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCD 313 (337)
T ss_dssp EET------TSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEE
T ss_pred EcC------CCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-EecCCCcEEEEE
Confidence 854 999999999987754 567899999999999999999999999999999999887663 346889999999
Q ss_pred eccC
Q 040533 360 VSPI 363 (364)
Q Consensus 360 ~sp~ 363 (364)
|+|.
T Consensus 314 ~s~~ 317 (337)
T 1gxr_A 314 ISVD 317 (337)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 9985
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=292.86 Aligned_cols=270 Identities=20% Similarity=0.282 Sum_probs=220.7
Q ss_pred eeeecCCCCCceEEEE-----cC-CCCEEEEEecCCcEEEEecCCc-------ceeeeeecCCCcEEEEEeecCCCCEEE
Q 040533 80 LLKVTGEDDFPTSISW-----SQ-DAKTLAVGYMASKLQLWDAETS-------KLIRNLEGHDKRVATASWNHWNGHILT 146 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~-----s~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~ 146 (364)
...+.+|.+.|++++| ++ ++++|++|+.|++|++||+.+. .....+.+|...|.+++|+| ++.+++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~ 92 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAI 92 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEE
Confidence 4456799999999999 77 8999999999999999998753 45567889999999999999 999999
Q ss_pred EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEE
Q 040533 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 226 (364)
+|+.|++|++||+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+... ..........|...|.+++|
T Consensus 93 s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 999999999999997764 6678899999999999999999999999999999998632 11111112368889999999
Q ss_pred ccCCC---------cEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 227 CPYQF---------NVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 227 ~~~~~---------~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
+|++. .++++++ .|+.|++||. +.+....+. +...|.+++|+|++++|+++.. |+.|++||
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~------dg~v~iwd 241 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVG--WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK------DKKLLIWD 241 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEE--TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET------TCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEc--CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC------CCeEEEEE
Confidence 99873 4677766 8999999994 456665655 4578999999999999999855 99999999
Q ss_pred CCCC-ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc--cee-----------ccCCceeeeeecc
Q 040533 297 YPHM-TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG--DFV-----------SHLDGLLSLKVSP 362 (364)
Q Consensus 297 ~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~-----------~~~~~v~~~~~sp 362 (364)
+... .....+ .+...|.+++|+|++++++++ .|+.|++|++.+.+... .+. +|...|.+++|+|
T Consensus 242 ~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 242 ILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp SSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred CCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 9543 333333 345679999999999877654 57889999998776544 322 6788899999999
Q ss_pred C
Q 040533 363 I 363 (364)
Q Consensus 363 ~ 363 (364)
.
T Consensus 320 ~ 320 (343)
T 2xzm_R 320 L 320 (343)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=305.04 Aligned_cols=300 Identities=16% Similarity=0.264 Sum_probs=251.3
Q ss_pred eeecccCCCc---cEEEEEeCCeEEEEEC----CCCc------eeeeee--ec------CCCCCceEEEEcCCCCEEEEE
Q 040533 47 YSNMMDWGRN---NILAIALGLELYLWKQ----ENGE------VQKLLK--VT------GEDDFPTSISWSQDAKTLAVG 105 (364)
Q Consensus 47 ~~~~~~~~~~---~~~~~~~~~~i~iw~~----~~~~------~~~~~~--~~------~~~~~v~~~~~s~~~~~l~~~ 105 (364)
.+.+++|+|+ .+++++.|+.|++|++ .+++ ...... +. +|...|++++|+|++++|++|
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 3778889885 3556667899999999 8776 222221 11 267799999999999999999
Q ss_pred ecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCc----------
Q 040533 106 YMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE---------- 175 (364)
Q Consensus 106 ~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---------- 175 (364)
+.||.|++|| .+++.+..+..|...|.+++|+| ++++|++++.||.|++||+.++.. ...+..+...
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENHS 203 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEE-EEEECCC-------------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeecccc
Confidence 9999999999 67888888999999999999999 999999999999999999987764 5556666665
Q ss_pred -----EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 176 -----VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 176 -----v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
+.+++|+|++ .+++++.++.|++||++.. +.+..+..|...|.+++|+|++. ++++++ .|+.|++||+
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~i~d~ 276 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNK-LLLSAS--DDGTLRIWHG 276 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS---SCSEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEEECS
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC---ceeeeeccCCCceEEEEECCCCC-EEEEEc--CCCEEEEEEC
Confidence 8899999975 6888999999999998865 44777788999999999999985 555655 7999999999
Q ss_pred CCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 251 QKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 251 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
++++.+..+. +...+.+++|+|++ .++++.. ++.|++||+.+++.+..+..|...|.+++|+|++++|++++
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSM------DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-EEEEEET------TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred CCCccceEecCCCccEEEEEECCCC-EEEEEeC------CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 9988888876 45789999999999 7777644 99999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeeCCC--------------------CCcceeccCC--ceeeeeeccC
Q 040533 330 ADETLRFWEAFGPS--------------------GSGDFVSHLD--GLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~--------------------~~~~~~~~~~--~v~~~~~sp~ 363 (364)
.||.|++||+.+.+ .+..+..|.. .|++++|+|.
T Consensus 350 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 350 MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp TTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 99999999999877 6777788866 9999999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=297.59 Aligned_cols=278 Identities=14% Similarity=0.207 Sum_probs=228.4
Q ss_pred eeecccCCCcc---EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCccee
Q 040533 47 YSNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.+.+++|++++ +++++.|+.|++||+.+++........+|...|.+++|+| ++++|++++.||.|++||+.+ ...
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~ 153 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVI 153 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cce
Confidence 47888999864 6677789999999999988777776668999999999999 789999999999999999985 455
Q ss_pred eeeecC---CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEE
Q 040533 123 RNLEGH---DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVH 198 (364)
Q Consensus 123 ~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 198 (364)
..+..+ ...|.+++|+| ++++|++++.|+.|++||++ ++ ....+..|...|.+++|+|+++ ++++++.|+.|+
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 230 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK 230 (383)
T ss_dssp EEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred EEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence 555444 47899999999 99999999999999999994 33 4677889999999999999998 999999999999
Q ss_pred EEeCCCCCCC-cceEEecccccceeEEEEcc-CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------------
Q 040533 199 VWDHSKMSSS-KCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------------- 262 (364)
Q Consensus 199 iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------------- 262 (364)
+||++..... ..+..+ +|...|.+++|+| ++. ++++++ .|+.|++||+++++....+..+
T Consensus 231 iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 231 LWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp EEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred EEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEc--CCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 9999874432 334444 6899999999999 874 556655 7999999999987765555421
Q ss_pred ----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 263 ----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 263 ----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
..+..++++|++++ + ++.|+.|++||+.+++.+..+.+ |...+..++|+|++++|++|+ ||.|++
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s------~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--L------LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--C------TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred ccCCCCceEEEecCCccc--c------cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 23334555566555 2 35699999999999999999986 456778889999999999997 999999
Q ss_pred EEeeC
Q 040533 337 WEAFG 341 (364)
Q Consensus 337 w~~~~ 341 (364)
||+++
T Consensus 378 w~~~~ 382 (383)
T 3ei3_B 378 WNRED 382 (383)
T ss_dssp EECC-
T ss_pred EecCC
Confidence 99875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=296.22 Aligned_cols=286 Identities=12% Similarity=0.194 Sum_probs=239.9
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.++.|++||+.+++......+.+|...|.+++|+|++++|++++.||.|++||+++++....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 37788888863 4455589999999999987555666779999999999999999999999999999999988875444
Q ss_pred --eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 125 --LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN---VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 125 --~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+..|...|.+++|+| ++++|++++.||.|++||++.... .......|...|.+++|+|++++|++++.|+.|++
T Consensus 90 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 168 (372)
T 1k8k_C 90 LVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168 (372)
T ss_dssp EECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEE
Confidence 356889999999999 999999999999999999987763 23334578899999999999999999999999999
Q ss_pred EeCCCC---------------CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-C
Q 040533 200 WDHSKM---------------SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-A 263 (364)
Q Consensus 200 wd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~ 263 (364)
||++.. ...+.+..+..|...|.+++|+|++. ++++++ .|+.|++||+++++.+..+..+ .
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~ 245 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--HDSTVCLADADKKMAVATLASETL 245 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--TTTEEEEEEGGGTTEEEEEECSSC
T ss_pred EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCceeEEEccCCC
Confidence 997521 12356777888999999999999985 556655 7999999999999999888765 5
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC--Cc--------------------------------ee------
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH--MT--------------------------------KW------ 303 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~--~~--------------------------------~~------ 303 (364)
++.+++|+|++.+++++. |+.|++|++.+ ++ ..
T Consensus 246 ~v~~~~~~~~~~~l~~~~-------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 246 PLLAVTFITESSLVAAGH-------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp CEEEEEEEETTEEEEEET-------TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred CeEEEEEecCCCEEEEEe-------CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 899999999999988873 99999999987 32 00
Q ss_pred eec-cccccceeEEeec-CCC---CEEEEEeCCCcEEEEEeeCCC
Q 040533 304 GEL-QHQTSRILELSQS-PDG---LTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 304 ~~~-~~~~~~i~~i~~~-~~~---~~l~~~~~dg~i~vw~~~~~~ 343 (364)
..+ .+|...|++++|+ ++| .+|++|+.||.|++|++.+++
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 223 4899999999966 676 999999999999999997754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=286.46 Aligned_cols=278 Identities=20% Similarity=0.256 Sum_probs=237.4
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceee---eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQK---LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-- 120 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-- 120 (364)
.+.+++|+|++ +++++.|+.|++||+.+++... .....+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 132 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc
Confidence 47888898864 6666669999999998775322 22223789999999999999999999999999999999887
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
....+..|...|.+++|+| ++++|++++.||.|++||+++++ ....+..|...+.+++|+|++++|++++.|+.|++|
T Consensus 133 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 133 IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 5667788999999999999 99999999999999999998765 466777899999999999999999999999999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeee
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
|++... .+..+ .+...+.+++|+|++. ++++++ .++.|++||+++++......+...+.+++|+|++++++++
T Consensus 211 d~~~~~---~~~~~-~~~~~v~~~~~s~~~~-~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 283 (337)
T 1gxr_A 211 DLREGR---QLQQH-DFTSQIFSLGYCPTGE-WLAVGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283 (337)
T ss_dssp ETTTTE---EEEEE-ECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECCCCc---eEeee-cCCCceEEEEECCCCC-EEEEEc--CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEe
Confidence 987653 34444 4678899999999985 455554 7999999999998876655667889999999999999988
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.. ++.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 284 ~~------dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 284 GK------DNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ET------TSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred cC------CCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 54 999999999999887554 477899999999999999999999999999974
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=295.37 Aligned_cols=283 Identities=16% Similarity=0.275 Sum_probs=232.5
Q ss_pred eeecccCCCcc--EEEEE-e---CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC---CCEEEEEecCCcEEEEecC
Q 040533 47 YSNMMDWGRNN--ILAIA-L---GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD---AKTLAVGYMASKLQLWDAE 117 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~-~---~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~ 117 (364)
.+.+++|+|++ +++++ . |+.|++||+.+++....... +|...|.+++|+|+ +++|++|+.||.|++||+.
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 47889999954 55554 2 89999999999887555444 78999999999998 6999999999999999999
Q ss_pred Ccc-eeeeeecCCCcEEEEEe------ecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC----cEEEEE----Ec
Q 040533 118 TSK-LIRNLEGHDKRVATASW------NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA----EVCGLK----WS 182 (364)
Q Consensus 118 ~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----~v~~~~----~~ 182 (364)
+++ .+..+.+|...|.+++| +| ++++|++++.||.|++||++++......+..|.. .+.+++ |+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred CCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence 988 88889999999999965 67 8999999999999999999987745666655554 889998 78
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEcc---CCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
|+++++++++.|+.|++||++... ......|...|.+++|+| ++. .+++++ .||.|++||+++++....+
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMA----LRWETNIKNGVCSLEFDRKDISMN-KLVATS--LEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTE----EEEEEECSSCEEEEEESCSSSSCC-EEEEEE--STTEEEEEEEEEEETTTEE
T ss_pred CCCCEEEEEccCCeEEEEECccCc----eeeecCCCCceEEEEcCCCCCCCC-EEEEEC--CCCeEEEEeCcCCCcccce
Confidence 899999999999999999988753 233456788999999999 774 555555 7999999999876654333
Q ss_pred ------ecCCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCC-------------------ceeeeccccccce
Q 040533 260 ------DTKAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHM-------------------TKWGELQHQTSRI 313 (364)
Q Consensus 260 ------~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~-------------------~~~~~~~~~~~~i 313 (364)
.+...+.+++|+|+++ +++++.. |+.|++||+.++ +.+..+..|...|
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 324 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGG------AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI 324 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEET------TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeC------CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence 3557899999999999 6777744 999999998754 3566778899999
Q ss_pred eEEeecCCCCEEE-EEeCCCcEEEEEeeCCCC
Q 040533 314 LELSQSPDGLTVV-SAAADETLRFWEAFGPSG 344 (364)
Q Consensus 314 ~~i~~~~~~~~l~-~~~~dg~i~vw~~~~~~~ 344 (364)
++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 325 ~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 325 SSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred eEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 9999999999998 899999999999987653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=282.98 Aligned_cols=251 Identities=19% Similarity=0.312 Sum_probs=210.5
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--cceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEE
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--SKLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHD 158 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d 158 (364)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.. .+.+..+.+|..+|.+++|+|. ++++|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 4568999999999999999999999999999999974 4677889999999999999862 489999999999999999
Q ss_pred cccCc-ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC-----
Q 040533 159 VRVSN-NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ----- 230 (364)
Q Consensus 159 ~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 230 (364)
++++. .....+..|...|.+++|+|+ +.+|++++.|+.|++||++..... ....+.+|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-CCEEEECCSSCEEEEEECCCC-----
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-eeeeeecccCccceEeecCCcccccc
Confidence 98764 234556789999999999997 889999999999999998865321 245667899999999999973
Q ss_pred -------CcEEEeecCCCCCeEEEEECCCCe----EEEEEec-CCCeEEEEEcCCc---cceeeeccCCccCCCCeEEEe
Q 040533 231 -------FNVLASGGGTQDGCIKIWNVQKGT----CIHSVDT-KAQICGLEWNRHH---KEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 231 -------~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~-~~~v~~~~~~~~~---~~l~~~~~~~~~~~~~~i~i~ 295 (364)
..++++++ .|++|++||+++++ ....+.. ...|.+++|+|++ .+++++.. |+.|++|
T Consensus 163 ~~~~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~------D~~v~iW 234 (297)
T 2pm7_B 163 EHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ------DRTCIIW 234 (297)
T ss_dssp -------CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEEE
T ss_pred cCCCCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC------CCcEEEE
Confidence 25788876 89999999998765 4555654 4679999999985 77887744 9999999
Q ss_pred eCCCCc---eeeec--cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 296 KYPHMT---KWGEL--QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 296 d~~~~~---~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
|+.+.. ....+ ..|...|.+++|+|+|++|++++.||.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 997643 11223 46788999999999999999999999999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=297.13 Aligned_cols=282 Identities=17% Similarity=0.263 Sum_probs=234.5
Q ss_pred eeecccCCCc------cEEEEEeCCeEEEEECCCCceeeeee---ecCCCCCceEEEEcCC----CCEEEEEecCCcEEE
Q 040533 47 YSNMMDWGRN------NILAIALGLELYLWKQENGEVQKLLK---VTGEDDFPTSISWSQD----AKTLAVGYMASKLQL 113 (364)
Q Consensus 47 ~~~~~~~~~~------~~~~~~~~~~i~iw~~~~~~~~~~~~---~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~i 113 (364)
.+.+++|+|. .+++++.++.|++||..+++...... ...|...|++++|+|+ +++|++|+.||.|++
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 3778888862 27888889999999999776544333 1237788999999998 679999999999999
Q ss_pred EecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee---ecccCcEEEEEEcCCCCEEEE
Q 040533 114 WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGLKWSNEGNLLAS 190 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~ 190 (364)
||+.+++.+..+.+|...|.+++|+|.++++|++++.||.|++||+++++. ...+ ..|...|.+++|+|++++|++
T Consensus 100 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp ECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred EEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCCCEEEE
Confidence 999999999999999999999999997789999999999999999987764 4444 679999999999999999999
Q ss_pred EeCCCeEEEEeCCCCCCCc-------------------------ceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 191 GGDDNLVHVWDHSKMSSSK-------------------------CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
++.||.|++||++...... .......|...|.+++|+ + .++++++ .|+.|
T Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~--~d~~i 253 (366)
T 3k26_A 179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKS--CENAI 253 (366)
T ss_dssp EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEEC--SSSEE
T ss_pred ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEe--cCCEE
Confidence 9999999999987642210 112233488999999998 3 4677765 89999
Q ss_pred EEEECCCCeE--------------EEEEec-CCCeEEEEEcCC--ccceeeeccCCccCCCCeEEEeeCCCCceee----
Q 040533 246 KIWNVQKGTC--------------IHSVDT-KAQICGLEWNRH--HKEILSGHGFSSSGDGQKLCLWKYPHMTKWG---- 304 (364)
Q Consensus 246 ~i~d~~~~~~--------------~~~~~~-~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~---- 304 (364)
++||+.++.. +..+.. ...+.+++|+|+ +++++++.. |+.|++||+.+++...
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ------VGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT------TSCEEEEECCSSSGGGCEEE
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec------CCcEEEEECCCCCCccccce
Confidence 9999987643 555543 467999999999 999998854 9999999999886543
Q ss_pred ecccc--ccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 305 ELQHQ--TSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 305 ~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.+..| ...|++++|+|++++|++++.||.|++||+.
T Consensus 328 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 67777 7899999999999999999999999999985
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=299.51 Aligned_cols=295 Identities=18% Similarity=0.273 Sum_probs=253.2
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.++.++++.+++++.|+.|++||+.+++.. ..+.+|.+.|.+++|+|++ +|++|+.||+|++||+++++.+..+.+
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFL--LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEE--EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 4567777777888999999999999998864 4455999999999999988 999999999999999999999999999
Q ss_pred CCCcEEEEEeec-CCCCEEEEeeCCCcEEEEEcccCcce----------------------eeeeecccCcEEEEEEcCC
Q 040533 128 HDKRVATASWNH-WNGHILTSGSQDKSIINHDVRVSNNV----------------------TSRINAHTAEVCGLKWSNE 184 (364)
Q Consensus 128 ~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~----------------------~~~~~~~~~~v~~~~~~~~ 184 (364)
|...|.+++|++ .++.++++|+.||.|++||+++.... ...+.+|...+.++ +++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 279 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH 279 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence 999999999985 26789999999999999999876532 44567788888887 567
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-C
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-A 263 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~ 263 (364)
++++++++.|+.|++||+++. +.+..+.+|...|.+++|+|++. .+++++ .|+.|++||+++++++..+..+ .
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~ 353 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERK-RCISAS--MDTTIRIWDLENGELMYTLQGHTA 353 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCEEEEEEcCCCC-EEEEEe--CCCcEEEEECCCCcEEEEEeCCCC
Confidence 889999999999999998764 55888889999999999999985 555655 8999999999999999998654 7
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.+.++.|+ +.+++++.. |+.|++||+.++....... +...+..++|+|++++|++|+ ||.|++||+.+++
T Consensus 354 ~v~~~~~~--~~~l~s~s~------dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 354 LVGLLRLS--DKFLVSAAA------DGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CEEEEEEC--SSEEEEEET------TSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred cEEEEEEc--CCEEEEEeC------CCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 79999997 467777754 9999999999987766653 566788899999999999998 8999999999998
Q ss_pred CCcc-eeccCCceeeeeeccC
Q 040533 344 GSGD-FVSHLDGLLSLKVSPI 363 (364)
Q Consensus 344 ~~~~-~~~~~~~v~~~~~sp~ 363 (364)
.+.. +..|.+.|.+++|++.
T Consensus 424 ~~~~~~~~~~~~v~~v~~~~~ 444 (464)
T 3v7d_B 424 LVHANILKDADQIWSVNFKGK 444 (464)
T ss_dssp EEESCTTTTCSEEEEEEEETT
T ss_pred EEehhhccCCCcEEEEEecCC
Confidence 8775 5678999999999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=291.63 Aligned_cols=270 Identities=13% Similarity=0.159 Sum_probs=236.3
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc------eeeeeecCCCcEEEEEeecCC----C---CEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK------LIRNLEGHDKRVATASWNHWN----G---HILTS 147 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~----~---~~l~~ 147 (364)
..+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+..|...|.+++|+| + + ++|++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVAT 86 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEE
Confidence 44568999999999998 799999999999999999887 7888889999999999999 7 8 99999
Q ss_pred eeCCCcEEEEEcccCcc----eeeeeecc-----cCcEEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CCC
Q 040533 148 GSQDKSIINHDVRVSNN----VTSRINAH-----TAEVCGLKWS----NEGNL-LASGGDDNLVHVWDHSK------MSS 207 (364)
Q Consensus 148 ~~~dg~i~~~d~~~~~~----~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~------~~~ 207 (364)
++.||.|++||+.++.. ....+..| ...|.+++|+ |++++ |++++.||.|++||++. ...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999987763 14556677 5899999999 99999 99999999999999876 332
Q ss_pred Cc--ceEEe-------cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-------CCCeEEEEEc
Q 040533 208 SK--CLHRF-------RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-------KAQICGLEWN 271 (364)
Q Consensus 208 ~~--~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~ 271 (364)
.. +...+ ..|...|.+++|+|++ ++++++ .|+.|++||+++++.+..+.. ...+.+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 11 01145 3478899999999998 666665 899999999999999998886 7889999999
Q ss_pred CCccceeeeccCCccCCC---CeEEEeeCCCCceeeeccc-------------cccceeEEeecCCCCEEEEEeCCCcEE
Q 040533 272 RHHKEILSGHGFSSSGDG---QKLCLWKYPHMTKWGELQH-------------QTSRILELSQSPDGLTVVSAAADETLR 335 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~-------------~~~~i~~i~~~~~~~~l~~~~~dg~i~ 335 (364)
|++.+++++.. + +.|++||+.+++.+..+.. |...|.+++|+|++++|++++.||.|+
T Consensus 243 ~~~~~l~~~~~------d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 243 PQGSLLAIAHD------SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp SSTTEEEEEEE------ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCCEEEEEec------CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 99999998864 7 9999999999999999998 999999999999999999999999999
Q ss_pred EEEeeCCCCCccee------cc---------------CCceeeeeeccC
Q 040533 336 FWEAFGPSGSGDFV------SH---------------LDGLLSLKVSPI 363 (364)
Q Consensus 336 vw~~~~~~~~~~~~------~~---------------~~~v~~~~~sp~ 363 (364)
+||+.+++.+..+. +| ..+|++++|+|.
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 99999998888888 77 999999999996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=305.60 Aligned_cols=299 Identities=15% Similarity=0.268 Sum_probs=260.0
Q ss_pred CcceeecccCCCcc-EEEEEeCCeEEEEECCCC----ceeeeeeecCCCCC-ceEEEEcC--CCCEEEEEecCCcEEEEe
Q 040533 44 NDYYSNMMDWGRNN-ILAIALGLELYLWKQENG----EVQKLLKVTGEDDF-PTSISWSQ--DAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~----~~~~~~~~~~~~~~-v~~~~~s~--~~~~l~~~~~dg~i~iw~ 115 (364)
....+.+++|+|++ +++++.++.|.+||+.++ +. ...+.+|... |++++|+| ++++|++|+.||.|++||
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCS--EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCcccc--ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 34458889999964 777777999999999987 44 4455699999 99999999 999999999999999999
Q ss_pred cCCc--------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCC----CcEEEEEcccCcceeeeeecccCcEEEEEEcC
Q 040533 116 AETS--------KLIRNLEGHDKRVATASWNHWNGHILTSGSQD----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 116 ~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (364)
+.++ +....+..|...|.+++|+| ++++|++++.+ +.|.+|| .++ ....+.+|...|.+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~-~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGN-SLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCC-EEEECCSCSSCEEEEEECS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCC-cceeeecCCccEEEEEECC
Confidence 9754 66778888999999999999 99999999987 6888888 333 4677789999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCCCCcceEEeccccc---ceeEEEEccC-CCcEEEeecCCCCCeEEEEECCCCeEEEE
Q 040533 184 EGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA---AVKALAWCPY-QFNVLASGGGTQDGCIKIWNVQKGTCIHS 258 (364)
Q Consensus 184 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 258 (364)
+++ ++++++.|+.|++||++.. +.+..+.+|.. .|.+++|+|+ + .++++++ .|+.|++||+++++.+..
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVG--SDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEE--TTCCEEEEETTTCCEEEE
T ss_pred CCCcEEEEEeCCCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCC-CEEEEEe--CCCeEEEEECCCCCEeEE
Confidence 997 8999999999999997654 55788888988 9999999999 6 5666655 799999999999999999
Q ss_pred E-----ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc----ccceeEEeecCCCCEEEEEe
Q 040533 259 V-----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 259 ~-----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~ 329 (364)
+ .+...+.+++|+ ++.+++++.. |+.|++||+.+++.+..+..+ ...+.++.|+ ++.++++++
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 316 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGA------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLS 316 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEET------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEE
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcC------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEE
Confidence 8 566889999999 9999998854 999999999999998888766 4678888886 889999999
Q ss_pred CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 330 ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.||.|++||+.+++....+.+|.+.|.+++| |.
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp TTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred CCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 9999999999988888888899999999998 73
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=281.99 Aligned_cols=277 Identities=17% Similarity=0.265 Sum_probs=243.3
Q ss_pred CCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCc
Q 040533 74 NGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKS 153 (364)
Q Consensus 74 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 153 (364)
.|...+...+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.
T Consensus 19 ~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYS 97 (369)
T ss_dssp SCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTE
T ss_pred eccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCe
Confidence 345566677889999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCC--------cceEEeccccc-
Q 040533 154 IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDHSKMSSS--------KCLHRFRDHRA- 219 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~--------~~~~~~~~~~~- 219 (364)
|++||+.+++. ...+. +...+.+++|+|+++++++++.+ +.|++||++..... .....+..|..
T Consensus 98 i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 98 IKLWDVSNGQC-VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEETTTCCE-EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEEEECCCCcE-EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 99999987764 44444 88899999999999999999999 99999998765432 12344445555
Q ss_pred -ceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 220 -AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 220 -~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
.+.+++|+|++. ++++++ .||.|++||+++ ++.+..+.. ...+.+++|+|++.+++++.. |+.|++||
T Consensus 176 ~~~~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d 246 (369)
T 3zwl_B 176 DAATVAGWSTKGK-YIIAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR------DTNSFLVD 246 (369)
T ss_dssp CCEEEEEECGGGC-EEEEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET------TSEEEEEE
T ss_pred cceeEEEEcCCCC-EEEEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC------CceEEEEE
Confidence 899999999985 555554 799999999998 777777764 578999999999999998854 99999999
Q ss_pred CCCCceeeeccccccceeEEeecCCCCEEEEEeCCC--------------cEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 297 YPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE--------------TLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--------------~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+.+++.+..+. +...+..++|+|+++++++++.++ .+++||+.+++....+.+|.+.|++++|+|
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 247 VSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP 325 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred CCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC
Confidence 99999988887 677899999999999999999988 899999999999999999999999999998
Q ss_pred C
Q 040533 363 I 363 (364)
Q Consensus 363 ~ 363 (364)
.
T Consensus 326 ~ 326 (369)
T 3zwl_B 326 Q 326 (369)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=290.73 Aligned_cols=275 Identities=15% Similarity=0.277 Sum_probs=239.8
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++|| .+++. ...+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGAL--LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCE--EEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCe--eeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 57888998863 66777899999999 44443 344558999999999999999999999999999999999999988
Q ss_pred eecCCCc---------------EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEE
Q 040533 125 LEGHDKR---------------VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 125 ~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
+..+... +.+++|+| + ..+++++.+|.|++||++++.. ...+..|...|.+++|+|++++|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTP-TGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp ECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSC-SEEECCCSSCEEEEEEETTTTEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCce-eeeeccCCCceEEEEECCCCCEEE
Confidence 8877776 99999998 5 5688999999999999997764 666778999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEE
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGL 268 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~ 268 (364)
+++.|+.|++||++.. +.+..+..|...|.+++|+|++ ++++++ .|+.|++||+++++.+..+.. ...+.++
T Consensus 264 ~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~ 336 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG---NSQNCFYGHSQSIVSASWVGDD--KVISCS--MDGSVRLWSLKQNTLLALSIVDGVPIFAG 336 (425)
T ss_dssp EEETTSCEEEECSSSB---SCSEEECCCSSCEEEEEEETTT--EEEEEE--TTSEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred EEcCCCEEEEEECCCC---ccceEecCCCccEEEEEECCCC--EEEEEe--CCCcEEEEECCCCcEeEecccCCccEEEE
Confidence 9999999999998764 4477778899999999999988 666655 799999999999999988875 5789999
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCc--------------------eeeecccccc--ceeEEeecCCCCEEE
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT--------------------KWGELQHQTS--RILELSQSPDGLTVV 326 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~--------------------~~~~~~~~~~--~i~~i~~~~~~~~l~ 326 (364)
+|+|++++++++.. ++.|++||+.+++ .+..+..|.. .|++++|+|++++|+
T Consensus 337 ~~s~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 410 (425)
T 1r5m_A 337 RISQDGQKYAVAFM------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKIS 410 (425)
T ss_dssp EECTTSSEEEEEET------TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEE
T ss_pred EEcCCCCEEEEEEC------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEE
Confidence 99999999998854 9999999999888 8888998876 999999999999999
Q ss_pred EEeCCCcEEEEEee
Q 040533 327 SAAADETLRFWEAF 340 (364)
Q Consensus 327 ~~~~dg~i~vw~~~ 340 (364)
+++.||.|++|+++
T Consensus 411 ~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEESSSCCEEEECC
T ss_pred EEecCceEEEEeec
Confidence 99999999999985
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=298.46 Aligned_cols=281 Identities=14% Similarity=0.196 Sum_probs=217.0
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---e
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---L 121 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~ 121 (364)
.+.+++|+|++ +++++.|+.|++||+.++.......+.+|...|.+++|+|++++|++|+.||.|++||+.+++ .
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 37889999864 445558999999999988544566677999999999999999999999999999999999887 5
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc--eeeeeec-ccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN--VTSRINA-HTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
...+..|...|.+++|+| ++++|++++.|+.|++||++++.. ....+.. |...|.+++|+|++++|++++.|+.|+
T Consensus 93 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp EEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred eeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 667778999999999999 999999999999999999987753 3455666 999999999999999999999999999
Q ss_pred EEeCCCCC---------------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE----EEEE
Q 040533 199 VWDHSKMS---------------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC----IHSV 259 (364)
Q Consensus 199 iwd~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~~ 259 (364)
+||++... ..+.+..+ +|...|.+++|+|+++ ++++++ .|+.|++||+.+++. +..+
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAG--HDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEE--TTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEe--CCCcEEEEECCCCCCcceeeEee
Confidence 99986322 12344555 8899999999999996 555554 799999999999876 5555
Q ss_pred ec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc--ee---------------------------------
Q 040533 260 DT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT--KW--------------------------------- 303 (364)
Q Consensus 260 ~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~--~~--------------------------------- 303 (364)
.. ...+.+++|+|++++++++. ++.+.+|+..... ..
T Consensus 248 ~~~~~~v~~~~~s~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (377)
T 3dwl_C 248 KLSQLPLRSLLWANESAIVAAGY-------NYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320 (377)
T ss_dssp ECSSSCEEEEEEEETTEEEEEES-------SSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred cCCCCceEEEEEcCCCCEEEEEc-------CCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence 54 46799999999999998874 4444567654211 00
Q ss_pred -ee----------------ccccccceeEEeecCCC-C---EEEEEeCCCcEEEEEe
Q 040533 304 -GE----------------LQHQTSRILELSQSPDG-L---TVVSAAADETLRFWEA 339 (364)
Q Consensus 304 -~~----------------~~~~~~~i~~i~~~~~~-~---~l~~~~~dg~i~vw~~ 339 (364)
.. ...|.+.|+++++.+.. . .|+||+.||.|++||+
T Consensus 321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 11288999999976644 3 6999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=273.66 Aligned_cols=277 Identities=16% Similarity=0.252 Sum_probs=234.1
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc---ceee
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIR 123 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~ 123 (364)
+.+++|..+ .+++++.||.|++||+.+++..... ..|...|.+++|+|++++|++|+.||.|++|++... +...
T Consensus 21 v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 21 VRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVV--YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp EEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE--EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred cEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEe--ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence 666777333 4677788999999999887764443 478999999999999999999999999999998754 5567
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~ 202 (364)
.+..|...|.+++| +++++++++.||.|++|| .......+..|...+.+++|+| +++++++++.|+.|++||.
T Consensus 99 ~~~~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 172 (313)
T 3odt_A 99 TLIGHQGNVCSLSF---QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172 (313)
T ss_dssp EECCCSSCEEEEEE---ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred chhhcccCEEEEEe---cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence 78889999999999 567999999999999999 3334667778999999999998 8999999999999999993
Q ss_pred CCCCCCcceEEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeee
Q 040533 203 SKMSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 203 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 280 (364)
. +....+.. |...+.+++|+|++. +++++ .|+.|++||+++++.+..+. +...+.+++|+|++ .++++
T Consensus 173 ~-----~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~ 242 (313)
T 3odt_A 173 D-----KVIKTFSGIHNDVVRHLAVVDDGH--FISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC 242 (313)
T ss_dssp T-----EEEEEECSSCSSCEEEEEEEETTE--EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE
T ss_pred C-----ceEEEEeccCcccEEEEEEcCCCe--EEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE
Confidence 3 33566666 889999999999985 55555 79999999999999998887 45789999999999 46666
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.. |+.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++||+.+++......
T Consensus 243 ~~------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 243 GE------DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp ET------TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred ec------CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 43 99999999999999999999999999999999998 6679999999999999877655443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=285.75 Aligned_cols=252 Identities=19% Similarity=0.328 Sum_probs=205.8
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEc
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~ 159 (364)
+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|+|. ++++|++|+.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 45899999999999999999999999999999998774 46778899999999999762 4899999999999999999
Q ss_pred ccCc-ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC------
Q 040533 160 RVSN-NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ------ 230 (364)
Q Consensus 160 ~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------ 230 (364)
+++. .....+.+|...|.+++|+|+ +.+|++++.|+.|++||++..........+.+|...|.+++|+|+.
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence 8764 235567789999999999997 7899999999999999987653322344556788999999999973
Q ss_pred ----------CcEEEeecCCCCCeEEEEECCCC---eEEEEEec-CCCeEEEEEcCCc----cceeeeccCCccCCCCeE
Q 040533 231 ----------FNVLASGGGTQDGCIKIWNVQKG---TCIHSVDT-KAQICGLEWNRHH----KEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 231 ----------~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~~~~~~~~~~i 292 (364)
..++++++ .|+.|++||++.. +++..+.. ...|.+++|+|++ .+|+++.. |+.|
T Consensus 169 ~~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~------D~~v 240 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ------DGRV 240 (316)
T ss_dssp --CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET------TCEE
T ss_pred ccccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC------CCeE
Confidence 24677776 8999999999765 34555543 4679999999987 67877744 9999
Q ss_pred EEeeCCCCc----eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 293 CLWKYPHMT----KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 293 ~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
++|++.+.. ....+..|...|.+++|+|++++|++++.||.|++|+....
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 999987631 22345678899999999999999999999999999998643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=286.35 Aligned_cols=266 Identities=16% Similarity=0.222 Sum_probs=227.9
Q ss_pred eecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 82 KVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
.+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+|.++++|++++.|+.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 456899999999999999 999999999999999999888777665 69999999999996679999999999999999
Q ss_pred cccCcceeeeeec---ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 159 VRVSNNVTSRINA---HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 159 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
++... ...+.. |...|.+++|+|++++|++++.|+.|++||++ .+.+..+..|...|.+++|+|+++.+++
T Consensus 148 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 148 FSGSV--IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----GHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp TTSCE--EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----SCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred CCCCc--eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----CCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 98532 344433 44889999999999999999999999999984 3457888899999999999999976888
Q ss_pred eecCCCCCeEEEEECCC----CeEEEEEecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc
Q 040533 236 SGGGTQDGCIKIWNVQK----GTCIHSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT 310 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 310 (364)
+++ .|+.|++||+++ +..+..+.+...+.+++|+| ++.+++++.. |+.|++||+.+++.+..+..|.
T Consensus 222 s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 222 TSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ------RNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp EEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES------SSEEEEEETTBTTSCSEEEECC
T ss_pred EEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC------CCcEEEEECCCCcccccccccc
Confidence 876 899999999998 77888888889999999999 9999998854 9999999999988877766543
Q ss_pred -----------------cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec--cCCceeeeeeccC
Q 040533 311 -----------------SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS--HLDGLLSLKVSPI 363 (364)
Q Consensus 311 -----------------~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~v~~~~~sp~ 363 (364)
..+..++|+|++++ +++.||.|++||+.+++.+..+.+ |...+..++|+|.
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~ 363 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPT 363 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTT
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecC
Confidence 23444667777766 778999999999999998888876 4677788899985
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-40 Score=282.93 Aligned_cols=246 Identities=13% Similarity=0.212 Sum_probs=215.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.|...|++++|+|++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+| ++++|++++.||.|++||++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCC
Confidence 588999999999999999999999999999999887 8888999999999999999 9999999999999999999876
Q ss_pred cce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCC
Q 040533 163 NNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 163 ~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+.. ...+..|...|.+++|+|++++|++++.|+.|++||++..........+ ..|...|.+++|+|++. ++++++
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-- 161 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGS-- 161 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEE--
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEc--
Confidence 532 2334678999999999999999999999999999998875432223333 56789999999999884 566655
Q ss_pred CCCeEEEEEC------------------CCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 241 QDGCIKIWNV------------------QKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 241 ~d~~i~i~d~------------------~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
.|+.|++||+ ..++.+..+. +...+.+++|+|++++++++.. |+.|++||+.+++
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------DSTVCLADADKKM 235 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET------TTEEEEEEGGGTT
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC------CCEEEEEECCCCc
Confidence 7999999995 3677777775 4577999999999999998854 9999999999999
Q ss_pred eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 302 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.+..+..|...|.+++|+|++++|++| .||.|++|++..
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999999999999999999988887 899999999988
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=287.50 Aligned_cols=288 Identities=22% Similarity=0.379 Sum_probs=250.2
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.++.++++.+++++.|+.|++||+.+++.. ..+.+|...|.+++|+ ++++++|+.||.|++||+.+++.+..+.+
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYG 197 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE--EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE--EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECC
Confidence 4567777777888999999999999998764 4455999999999997 57999999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
|...|.+++| +++.+++|+.||.|++||+.+++. ...+.+|...|.+++| +++++++++.||.|++||+++.
T Consensus 198 h~~~v~~~~~---~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-- 269 (445)
T 2ovr_B 198 HTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-- 269 (445)
T ss_dssp CSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT--
T ss_pred CCCcEEEEEe---cCCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC--
Confidence 9999999999 457899999999999999987764 6677889999999999 6789999999999999997654
Q ss_pred CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCcc
Q 040533 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
+.+..+.+|...|.++.| ++ ..+++++ .|+.|++||+++++.+..+..+ ..+.++.++ +.+++++..
T Consensus 270 -~~~~~~~~~~~~v~~~~~--~~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~---- 337 (445)
T 2ovr_B 270 -TCLHTLQGHTNRVYSLQF--DG-IHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA---- 337 (445)
T ss_dssp -EEEEEECCCSSCEEEEEE--CS-SEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET----
T ss_pred -cEeEEecCCCCceEEEEE--CC-CEEEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC----
Confidence 557888899999999999 44 4566665 7999999999999999888654 557777764 567777754
Q ss_pred CCCCeEEEeeCCCCceeeeccc---cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-----eccCCceeee
Q 040533 287 GDGQKLCLWKYPHMTKWGELQH---QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF-----VSHLDGLLSL 358 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-----~~~~~~v~~~ 358 (364)
|+.|++||+.+++.+..+.. |...|++++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|+++
T Consensus 338 --dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 413 (445)
T 2ovr_B 338 --DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413 (445)
T ss_dssp --TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred --CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence 99999999999999998876 88899999995 579999999999999999999888777 4788899999
Q ss_pred eeccC
Q 040533 359 KVSPI 363 (364)
Q Consensus 359 ~~sp~ 363 (364)
+|+|.
T Consensus 414 ~~s~~ 418 (445)
T 2ovr_B 414 RASNT 418 (445)
T ss_dssp EECSS
T ss_pred EecCC
Confidence 99985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=298.51 Aligned_cols=299 Identities=17% Similarity=0.240 Sum_probs=251.6
Q ss_pred eecccCCC--cc--EEEEEeCCeEEEEECCCC------ceeeeeeecCCCCCceEEEEcCCCCEEEEEecC----CcEEE
Q 040533 48 SNMMDWGR--NN--ILAIALGLELYLWKQENG------EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA----SKLQL 113 (364)
Q Consensus 48 ~~~~~~~~--~~--~~~~~~~~~i~iw~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i 113 (364)
+.+++|+| ++ +++++.|+.|++||+.++ +......+..|...|.+++|+|++++|++++.+ +.|.+
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~ 146 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 146 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence 77888888 64 666778999999999866 444556667899999999999999999999987 68888
Q ss_pred EecCCcceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccC---cEEEEEEcCC-CCEE
Q 040533 114 WDAETSKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTA---EVCGLKWSNE-GNLL 188 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l 188 (364)
|| .++.+..+.+|...|.+++|+| ++. ++++++.|+.|++||+.+.+. ...+..|.. .|.+++|+|+ +++|
T Consensus 147 ~d--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 147 WD--SGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp TT--TCCEEEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred EE--CCCcceeeecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcce-eeeecccCCCCceEEEEEECCCCCCEE
Confidence 88 6778888999999999999999 665 899999999999999987664 667778988 9999999999 9999
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEe-c---ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRF-R---DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--- 261 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--- 261 (364)
++++.|+.|++||+++. +.+..+ . .|...|.+++|+ ++ .++++++ .|+.|++||+++++.+..+..
T Consensus 223 ~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~ 295 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVG--ADATIRVWDVTTSKCVQKWTLDKQ 295 (615)
T ss_dssp EEEETTCCEEEEETTTC---CEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEE--TTSEEEEEETTTTEEEEEEECCTT
T ss_pred EEEeCCCeEEEEECCCC---CEeEEecccccccCCceEEEEEc-CC-CEEEEEc--CCCcEEEEECCCCcEEEEEcCCCC
Confidence 99999999999998764 446666 5 789999999999 66 4556655 789999999876543322211
Q ss_pred --------------------------------------------------------------------------------
Q 040533 262 -------------------------------------------------------------------------------- 261 (364)
Q Consensus 262 -------------------------------------------------------------------------------- 261 (364)
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v 375 (615)
T 1pgu_A 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLI 375 (615)
T ss_dssp CGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCE
T ss_pred cccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCce
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 040533 262 -------------------------------------------------------------------------------- 261 (364)
Q Consensus 262 -------------------------------------------------------------------------------- 261 (364)
T Consensus 376 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (615)
T 1pgu_A 376 VSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS 455 (615)
T ss_dssp EEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred EEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc
Confidence
Q ss_pred --------------------------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-
Q 040533 262 --------------------------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH- 308 (364)
Q Consensus 262 --------------------------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~- 308 (364)
...+.+++|+|++++++++. .|+.|++||+.+++.+..+.+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~ 529 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD------VMGKILLYDLQSREVKTSRWAF 529 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEEECCSCC
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC------CCCeEEEeeCCCCcceeEeecC
Confidence 12355667777777777764 499999999999999999888
Q ss_pred cccceeEEeecC----------CCCEEEEEeCCCcEEEEEeeCC-CCCcceeccCCceeeeeeccC
Q 040533 309 QTSRILELSQSP----------DGLTVVSAAADETLRFWEAFGP-SGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 309 ~~~~i~~i~~~~----------~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|...|++++|+| ++++|++++.||.|++||+.++ +.+..+.+|.+.|++++|+|.
T Consensus 530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~ 595 (615)
T 1pgu_A 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 595 (615)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC
Confidence 999999999999 9999999999999999999998 677788899999999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=308.36 Aligned_cols=280 Identities=15% Similarity=0.235 Sum_probs=243.8
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++|+|++ +++++.+|.|++||..+++.... +.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS--IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE--EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 8889999964 56666789999999999876544 4489999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.+|...|.+++|+| ++.+|++++.||.|++||+.++......+.+|...|.+++|+| ++..+++++.||.|++||++.
T Consensus 94 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~ 172 (814)
T 3mkq_A 94 EAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (814)
T ss_dssp ECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred ecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999999 9999999999999999999987666778889999999999999 888999999999999999876
Q ss_pred CCCCcceEEecc-cccceeEEEEcc--CCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeee
Q 040533 205 MSSSKCLHRFRD-HRAAVKALAWCP--YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 205 ~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 280 (364)
... ...+.. +...+.+++|+| ++. ++++++ .||.|++||+.+++.+..+.. ...+.+++|+|++++++++
T Consensus 173 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 173 STP---NFTLTTGQERGVNYVDYYPLPDKP-YMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp SSC---SEEEECCCTTCCCEEEECCSTTCC-EEEEEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred Ccc---eeEEecCCCCCEEEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 543 444444 448899999999 774 566655 799999999999999988874 4789999999999999988
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE-EEEEeCCCcEEEEEeeCC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT-VVSAAADETLRFWEAFGP 342 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~vw~~~~~ 342 (364)
.. |+.|++||+.+++.+..+..|...+.+++|+|++.. +++++.|+.+.+|++...
T Consensus 247 ~~------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 247 SE------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp ET------TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred eC------CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 54 999999999999999999999999999999999873 244555777888887654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=301.31 Aligned_cols=283 Identities=8% Similarity=0.116 Sum_probs=212.4
Q ss_pred eCCeEEEEECCCCceee--eeeecCCCCCceEEEEcCC------CCEEEEEecCCcEEEEecCCcce-----------ee
Q 040533 63 LGLELYLWKQENGEVQK--LLKVTGEDDFPTSISWSQD------AKTLAVGYMASKLQLWDAETSKL-----------IR 123 (364)
Q Consensus 63 ~~~~i~iw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~iw~~~~~~~-----------~~ 123 (364)
.|+.|+|||+.+++... ...+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++. ..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence 46789999998876422 2334577889999999997 57999999999999999987642 23
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEE--EEcCCC-CEEEEEeCCCeEEEE
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL--KWSNEG-NLLASGGDDNLVHVW 200 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~iw 200 (364)
.+.+|...|++++|+| + ..|++|+.||+|++||++++......+.+|...|.++ +|+|++ .+|++++.|++|++|
T Consensus 261 ~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW 338 (524)
T 2j04_B 261 TLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338 (524)
T ss_dssp EECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred EEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence 6778999999999997 4 4899999999999999987755556688999999999 578887 899999999999999
Q ss_pred eCCCCCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccce
Q 040533 201 DHSKMSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEI 277 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 277 (364)
|+++. +....+.+|.. .|.+++|+|++.. +++++ .|++|++||++++.++..+. +...|.+++|+|+++++
T Consensus 339 D~~~~---~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l 412 (524)
T 2j04_B 339 NPKDI---ATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMV 412 (524)
T ss_dssp CGGGH---HHHCEEEEECSCCSCCCEEEETTTTE-EEEEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBC
T ss_pred ECCCC---CcccccccccccCcccceEeCCCcCe-EEEeC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeE
Confidence 98764 33445555543 5889999999854 55554 79999999999988766654 55789999999999999
Q ss_pred eeeccCCccCCCCeEEEeeCCCCceeeeccc-----cccceeEEeecCCCCEEEEEeCCCcEEEEEee-CCCCCcceecc
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-----QTSRILELSQSPDGLTVVSAAADETLRFWEAF-GPSGSGDFVSH 351 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~ 351 (364)
++|.. |+.|++||+... .+..... +...+.+++|+|+++.+. ... .+.+|+.. ++..+..+.+|
T Consensus 413 ~Sgs~------Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh 482 (524)
T 2j04_B 413 LAGSA------DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAH 482 (524)
T ss_dssp EEEET------TTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------C
T ss_pred EEEEC------CCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCC
Confidence 98854 999999998653 2222211 112578999999998553 222 33344433 45567788899
Q ss_pred CCceeeeeeccC
Q 040533 352 LDGLLSLKVSPI 363 (364)
Q Consensus 352 ~~~v~~~~~sp~ 363 (364)
...|.+|+|||.
T Consensus 483 ~~~V~~Vafsp~ 494 (524)
T 2j04_B 483 GINITCTKWNET 494 (524)
T ss_dssp CCSCCCEEECCS
T ss_pred CceEEEEECCCC
Confidence 999999999996
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-40 Score=324.69 Aligned_cols=310 Identities=17% Similarity=0.319 Sum_probs=257.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++||..+++.. ..+.+|...|.+++|+|++++|++|+.||.|+|||+.+++.+..
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 47788888864 666778999999999998764 44559999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
+.+|...|.+++|+|. +..++++|+.||.|++||+.++.. ...+.+|...|.+++|+|+++++++++.||.|++||++
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC
Confidence 9999999999999984 345899999999999999997764 66778999999999999999999999999999999986
Q ss_pred CCCCCc---------------------------------------------------ceEE-ecccccceeEEEEccCCC
Q 040533 204 KMSSSK---------------------------------------------------CLHR-FRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 204 ~~~~~~---------------------------------------------------~~~~-~~~~~~~v~~~~~~~~~~ 231 (364)
...... .... ..+|...|.+++|+|++.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 853 (1249)
T 3sfz_A 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 853 (1249)
T ss_dssp GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT
T ss_pred CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC
Confidence 532100 0111 125778899999999985
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeecc----------------------------
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHG---------------------------- 282 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---------------------------- 282 (364)
++++++ .|+.|++||+.++..+..+..+ ..|.+++|+|+++.++++..
T Consensus 854 -~l~~~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 930 (1249)
T 3sfz_A 854 -LAVIAL--SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVF 930 (1249)
T ss_dssp -EEEEEC--SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEE
T ss_pred -EEEEEe--CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEE
Confidence 555554 7999999999999988887654 66889999998888777643
Q ss_pred ---------------------------------------------CCccCCCCeEEEeeCCCCceeeeccccccceeEEe
Q 040533 283 ---------------------------------------------FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317 (364)
Q Consensus 283 ---------------------------------------------~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 317 (364)
+++++.+|.|++||+.+++....+.+|...|++++
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~ 1010 (1249)
T 3sfz_A 931 QENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1010 (1249)
T ss_dssp ETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE
T ss_pred cCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE
Confidence 01123455666666667777777888999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|+|+|++|++++.||.|++||+.+++.. .+..|...|.+++|+|.
T Consensus 1011 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~ 1055 (1249)
T 3sfz_A 1011 FTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD 1055 (1249)
T ss_dssp ECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSS
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCC
Confidence 9999999999999999999999987665 34588999999999984
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=276.35 Aligned_cols=284 Identities=19% Similarity=0.276 Sum_probs=230.8
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCcc-----eeeeeecCCCcEEEEEeec
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETSK-----LIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~ 139 (364)
.++++...+.+.....++.+|.+.|++++|+|+ +++||+|+.||+|+|||+.+.+ ....+.+|...|.+++|+|
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC
Confidence 355555555555445567899999999999997 6899999999999999987653 4567888999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
++++|++++.|+.|++|+...... ......+...+..+.+++++++|++++.|+.+++||+.... .......+|..
T Consensus 97 -dg~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~--~~~~~~~~~~~ 172 (340)
T 4aow_A 97 -DGQFALSGSWDGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC--KYTVQDESHSE 172 (340)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EEEECSSSCSS
T ss_pred -CCCEEEEEcccccceEEeecccce-eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc--eEEEEeccccC
Confidence 999999999999999999986654 55566788889999999999999999999999999976532 33445567889
Q ss_pred ceeEEEEccCCCc-EEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 220 AVKALAWCPYQFN-VLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 220 ~v~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.+..++|++++.. ++++++ .|+.|++||+++++.+..+.. ...|.+++|+|++++++++.. |+.|++||+
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------Dg~i~iwd~ 244 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK------DGQAMLWDL 244 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TCEEEEEET
T ss_pred cccceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC------CCeEEEEEe
Confidence 9999999987644 556665 899999999999999888865 478999999999999998854 999999999
Q ss_pred CCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcc---------eeccCCceeeeeeccC
Q 040533 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD---------FVSHLDGLLSLKVSPI 363 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~---------~~~~~~~v~~~~~sp~ 363 (364)
.+.+++..+..+ ..|.++.|+|++. +++++.|+.|++||++++..... ..+|...|++++|+|.
T Consensus 245 ~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 245 NEGKHLYTLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp TTTEEEEEEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred ccCceeeeecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence 999999888755 5799999999875 55666799999999887644332 3368899999999995
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=312.93 Aligned_cols=271 Identities=16% Similarity=0.272 Sum_probs=245.5
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+..|..+|.+++|+| ++++|++++.||.|++||+.
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECC
Confidence 44568999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+++. ...+.+|...|.+++|+|++++|++++.||.|++||++.. ......+.+|...|.+++|+|.+...+++++
T Consensus 86 ~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-- 160 (814)
T 3mkq_A 86 TGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASGC-- 160 (814)
T ss_dssp TCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT--SEEEEEEECCSSCEEEEEEETTEEEEEEEEE--
T ss_pred CCcE-EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC--ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe--
Confidence 7764 6677889999999999999999999999999999998754 2456677889999999999994336777766
Q ss_pred CCCeEEEEECCCCeEEEEEecC--CCeEEEEEcC--CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEE
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNR--HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
.||.|++||+.++.....+..+ ..+..++|+| ++.+++++.. ++.|++||+.+++.+..+.+|...|.++
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT------TSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 8999999999988777666543 7799999999 9999998854 9999999999999999999999999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+|+|++++|++++.||.|++||+.+++....+..|...+.+++|+|.
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence 99999999999999999999999999888888899999999999985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=282.86 Aligned_cols=269 Identities=14% Similarity=0.247 Sum_probs=225.4
Q ss_pred ecCCCCCceEEEEcCCCCEE-EEEec---CCcEEEEecCCcceeeee-ecCCCcEEEEEeecCC---CCEEEEeeCCCcE
Q 040533 83 VTGEDDFPTSISWSQDAKTL-AVGYM---ASKLQLWDAETSKLIRNL-EGHDKRVATASWNHWN---GHILTSGSQDKSI 154 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l-~~~~~---dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i 154 (364)
..+|...|.+++|+|++..+ ++|+. ||.|++||+.+++..... .+|...|.+++|+| + +.+|++++.||.|
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA-TSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT-CCTTTCCEEEEETTSCE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC-CCCCCceEEEecCCCeE
Confidence 35799999999999999655 55655 899999999988765443 36899999999999 6 7999999999999
Q ss_pred EEEEcccCcceeeeeecccCcEEEEE------EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc----ceeEE
Q 040533 155 INHDVRVSNNVTSRINAHTAEVCGLK------WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA----AVKAL 224 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~ 224 (364)
++||+.+++.....+.+|...|.+++ |+|++++|++++.|+.|++||++... ..+..+..+.+ .+.++
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD--DPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS--SCSEEECCCTTSCCCCEEEE
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC--CcceeccccCCCCCCceEEE
Confidence 99999987745777889999999995 57889999999999999999988754 23555554444 78888
Q ss_pred E----EccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcC---CccceeeeccCCccCCCCeEEEeeC
Q 040533 225 A----WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR---HHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 225 ~----~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
+ |+|++ .++++++ .|+.|++||+++++......+...+.+++|+| ++.+++++.. ++.|++||+
T Consensus 171 ~~~~~~~~~~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~ 241 (357)
T 3i2n_A 171 AFGNAYNQEE-RVVCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSL------EGKFHVFDM 241 (357)
T ss_dssp EEECCCC-CC-CEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEES------TTEEEEEEE
T ss_pred EEEeccCCCC-CEEEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECC------CCeEEEEeC
Confidence 8 67887 4566655 79999999999999888888889999999999 8999998854 999999999
Q ss_pred CCCceeeecc-----ccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCCC-------------------CcceeccC
Q 040533 298 PHMTKWGELQ-----HQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPSG-------------------SGDFVSHL 352 (364)
Q Consensus 298 ~~~~~~~~~~-----~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~~-------------------~~~~~~~~ 352 (364)
++++.+..+. .|...|++++|+|+++ +|++++.||.|++||+..+.. +..+.+|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 8877766655 8999999999999998 899999999999999987543 34566899
Q ss_pred CceeeeeeccC
Q 040533 353 DGLLSLKVSPI 363 (364)
Q Consensus 353 ~~v~~~~~sp~ 363 (364)
++|++++|+|.
T Consensus 322 ~~v~~~~~s~~ 332 (357)
T 3i2n_A 322 QPISSLDWSPD 332 (357)
T ss_dssp SCEEEEEECSS
T ss_pred CCeeEEEEcCC
Confidence 99999999986
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=272.22 Aligned_cols=264 Identities=16% Similarity=0.226 Sum_probs=232.8
Q ss_pred eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 79 KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 79 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
....+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+| ++++|++++.||.|++|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEE
Confidence 34556799999999999 9999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 159 VRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 159 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+.... .....+..|...|.+++| +++++++++.|+.|++|| .......+..|...+.++.|.|.....+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-----EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-----TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-----CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 87653 335667789999999999 567999999999999999 234577788899999999999944466777
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
++ .|+.|++|| .++....+. +...+.+++|+|++. ++++.. ++.|++||+++++.+..+..|...|+
T Consensus 161 ~~--~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 161 AS--ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN------DGLIKLVDMHTGDVLRTYEGHESFVY 229 (313)
T ss_dssp EE--TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET------TSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EE--CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC------CCeEEEEECCchhhhhhhhcCCceEE
Confidence 66 899999999 455666665 457899999999999 666643 99999999999999999999999999
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|+|++ .|++++.||.|++||+.+++....+..|..+|.+++|+|.
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence 99999999 6999999999999999999999999999999999999985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=293.11 Aligned_cols=266 Identities=23% Similarity=0.412 Sum_probs=231.0
Q ss_pred CCceEEEEcCCCC-EEEEE----------ecCCcEEEEecCCcc---eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCc
Q 040533 88 DFPTSISWSQDAK-TLAVG----------YMASKLQLWDAETSK---LIRNLEGHDKRVATASWNHWNGHILTSGSQDKS 153 (364)
Q Consensus 88 ~~v~~~~~s~~~~-~l~~~----------~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 153 (364)
..|.+++|+|+++ +|++| +.||.|+|||+.+++ .+..+ .|...|.+++|+| ++.+|++++.||.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH-NNKIIAGALDNGS 90 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS-SSSCEEEEESSSC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC-CCCeEEEEccCCe
Confidence 4688999999987 99999 889999999999876 33334 4889999999999 9999999999999
Q ss_pred EEEEEccc---CcceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCC------CCcceEEecccccceeE
Q 040533 154 IINHDVRV---SNNVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHSKMS------SSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 154 i~~~d~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~v~~ 223 (364)
|++||+.. +......+..|...|.+++|+|+ +++|++++.|+.|++||++... ..........|...|.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 23356778889999999999998 8999999999999999998765 22223334678899999
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-------CCCeEEEEEcCCcc-ceeeeccCCccCCCC---eE
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-------KAQICGLEWNRHHK-EILSGHGFSSSGDGQ---KL 292 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~---~i 292 (364)
++|+|++..++++++ .|+.|++||+++++.+..+.. ...+.+++|+|++. +++++.. ++ .|
T Consensus 171 ~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------d~~~~~i 242 (416)
T 2pm9_A 171 LAWNQSLAHVFASAG--SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG------SDNDPSI 242 (416)
T ss_dssp EEECSSCTTEEEEES--SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC------CSSSCCC
T ss_pred EEeCCCCCcEEEEEc--CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC------CCCCceE
Confidence 999999668888876 899999999999999988875 46799999999984 5666643 66 99
Q ss_pred EEeeCCCC-ceeeecc-ccccceeEEeecC-CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 293 CLWKYPHM-TKWGELQ-HQTSRILELSQSP-DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 293 ~i~d~~~~-~~~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++||++++ .++..+. +|...|++++|+| ++++|++++.||.|++||+.+++.+..+..|.+.|.+++|+|.
T Consensus 243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 316 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPE 316 (416)
T ss_dssp CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTT
T ss_pred EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCC
Confidence 99999986 6777787 8999999999999 9999999999999999999999999999999999999999995
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=286.79 Aligned_cols=287 Identities=18% Similarity=0.404 Sum_probs=232.0
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.+++++++.+++++.|+.|++||..+++... .+.+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 211 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH 211 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCEEE--EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE--EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC
Confidence 66788877778899999999999999988654 45589999999998 788999999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
|...|.+++|+ ++.+++|+.||.|++||+.++.... ..+.+|...|.+++| +++++++++.||.|++||+++.
T Consensus 212 h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 212 HCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp CCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred CCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence 99999999995 4699999999999999998776432 567789999999999 6789999999999999998765
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
+.+..+.+|...|.++.|++ .++++++ .||.|++||+++++++..+..+ ..+.+++| ++.+++++..
T Consensus 287 ---~~~~~~~~~~~~v~~~~~~~---~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~-- 354 (435)
T 1p22_A 287 ---EFVRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY-- 354 (435)
T ss_dssp ---CEEEEEECCSSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET--
T ss_pred ---cEEEEEcCCCCcEEEEEeCC---CEEEEEe--CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC--
Confidence 45888889999999999953 5677766 8999999999999999988754 67999998 6788888754
Q ss_pred ccCCCCeEEEeeCCCCc---------eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCce
Q 040533 285 SSGDGQKLCLWKYPHMT---------KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGL 355 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v 355 (364)
||.|++||+.++. .+..+.+|.+.|.+++| ++.+|++|+.||.|++||+.+........ ...+.
T Consensus 355 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~ 427 (435)
T 1p22_A 355 ----DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPS 427 (435)
T ss_dssp ----TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------
T ss_pred ----CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCc
Confidence 9999999997665 78888999999999999 78899999999999999998876654433 34456
Q ss_pred eeeeecc
Q 040533 356 LSLKVSP 362 (364)
Q Consensus 356 ~~~~~sp 362 (364)
.++.|.|
T Consensus 428 ~~~~~~~ 434 (435)
T 1p22_A 428 RTYTYIS 434 (435)
T ss_dssp -------
T ss_pred cceeeec
Confidence 6666654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=312.43 Aligned_cols=303 Identities=11% Similarity=0.087 Sum_probs=227.7
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee---
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI--- 122 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--- 122 (364)
.+.+++|+++. +++++.|+.|++||+.+++....+ .|...|++++|+|++++|++|+.||.|++||+++++..
T Consensus 60 ~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~---~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~ 136 (902)
T 2oaj_A 60 AIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTV---FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK 136 (902)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEE---ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEE---cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence 47888998866 778888999999999998765444 36678999999999999999999999999999988753
Q ss_pred --------eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc------------------cCcE
Q 040533 123 --------RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH------------------TAEV 176 (364)
Q Consensus 123 --------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------------------~~~v 176 (364)
..+.+|..+|.+++|+|.++..|++|+.||.| +||+++++. ...+..| ...|
T Consensus 137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccCCCe
Confidence 23467899999999999556899999999999 999987664 4444443 5789
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE--e---cc-------------cccceeEEEEc----cCCCcEE
Q 040533 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR--F---RD-------------HRAAVKALAWC----PYQFNVL 234 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~---~~-------------~~~~v~~~~~~----~~~~~~~ 234 (364)
.+++|+|+|++|++++.||.|++||+++++. +.. + .. |...|.+++|+ |++..++
T Consensus 215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~---~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll 291 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHM---IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291 (902)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEETTTCCE---EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcE---EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence 9999999999999999999999999876432 221 1 11 24468888885 3333555
Q ss_pred EeecCC--------------------------------------------------------------------------
Q 040533 235 ASGGGT-------------------------------------------------------------------------- 240 (364)
Q Consensus 235 ~~~~g~-------------------------------------------------------------------------- 240 (364)
++++..
T Consensus 292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence 555300
Q ss_pred CCCeEEEEECCCCeEEEE-------E-ecCCC----------------------------------eEEEEEcCCcccee
Q 040533 241 QDGCIKIWNVQKGTCIHS-------V-DTKAQ----------------------------------ICGLEWNRHHKEIL 278 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~-------~-~~~~~----------------------------------v~~~~~~~~~~~l~ 278 (364)
.|+.|++||+.++..... + .++.. +..++|+|+++.++
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence 134455555544422111 0 00012 23345578888888
Q ss_pred eeccCCccCCCCeEEEeeCCCCceee--ec----c-----ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC---
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWG--EL----Q-----HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG--- 344 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~--~~----~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~--- 344 (364)
+++. |++|++||+.++.... .+ . +|...|++++|+|+|++||+|+.||+|+||++.+++.
T Consensus 452 Sgs~------DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~ 525 (902)
T 2oaj_A 452 TGHS------NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV 525 (902)
T ss_dssp EEET------TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---
T ss_pred EecC------CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCc
Confidence 8754 9999999998874321 11 1 7888999999999999999999999999999987632
Q ss_pred ------------------------------------------CcceeccCCceeeeeeccC
Q 040533 345 ------------------------------------------SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 345 ------------------------------------------~~~~~~~~~~v~~~~~sp~ 363 (364)
+..+.+|.+.|++|+|||.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 526 ENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI 586 (902)
T ss_dssp ------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred cccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC
Confidence 3456689999999999995
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=290.22 Aligned_cols=245 Identities=12% Similarity=0.157 Sum_probs=204.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.+.+.|++++|+|++++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+| ++++|++++.|+.|++||+.++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC-----
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 45678999999999999999999999999999988 77888999999999999999 8999999999999999999876
Q ss_pred c--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-cccceeEEEEccCCCcEEEeecC
Q 040533 163 N--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 163 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
. .....+..|...|.+++|+|++++|++++.|+.|++||++..........+.. |...|.+++|+|++ .++++++
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~- 165 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGC- 165 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEE-
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEe-
Confidence 5 23455678999999999999999999999999999999987654445677777 99999999999988 4666665
Q ss_pred CCCCeEEEEECC------------------CCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 240 TQDGCIKIWNVQ------------------KGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 240 ~~d~~i~i~d~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
.|+.|++||+. .++++..+.+...|.+++|+|++++++++.. |+.|++||+.+++
T Consensus 166 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 166 -ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH------DSSVTIAYPSAPE 238 (377)
T ss_dssp -SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET------TTEEC-CEECSTT
T ss_pred -CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC------CCcEEEEECCCCC
Confidence 79999999985 2445555555678999999999999998854 9999999999998
Q ss_pred e----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 302 K----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 302 ~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
. +..+..|...|.+++|+|++++|++++.|+.+ +|+..
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8 88889999999999999999999999877666 66654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=290.53 Aligned_cols=277 Identities=13% Similarity=0.222 Sum_probs=224.3
Q ss_pred eeecccCCC-cc--EEEEEeCCeEEEEECCC---Cceee-eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--
Q 040533 47 YSNMMDWGR-NN--ILAIALGLELYLWKQEN---GEVQK-LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE-- 117 (364)
Q Consensus 47 ~~~~~~~~~-~~--~~~~~~~~~i~iw~~~~---~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-- 117 (364)
.+.+++|+| ++ +++++.|+.|++||+.+ +.... ...+ +|...|++++|+|++++|++|+.||.|++||++
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 143 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHY 143 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccc
Confidence 478888888 53 67778899999999876 44222 2333 689999999999999999999999999999995
Q ss_pred -Ccceeeeeec------------CCCcEEEEE--eecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec--ccCcEEEEE
Q 040533 118 -TSKLIRNLEG------------HDKRVATAS--WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA--HTAEVCGLK 180 (364)
Q Consensus 118 -~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~v~~~~ 180 (364)
+++....+.. +...+.++. +++ ++.+|++++.||.|++||+++++. ...+.. |...|.+++
T Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLER-LQIIENSPRHGAVSSIC 221 (437)
T ss_dssp EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCE-EEEEECCGGGCCEEEEE
T ss_pred cCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee-eEEEccCCCCCceEEEE
Confidence 5555444332 445566666 446 789999999999999999987765 555666 889999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccC---CCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPY---QFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
|+|++++|++|+.||.|++||++.. +.+..+. .|...|.+++|+|. ...++++++ .|+.|++||+++++.+
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES--TTEEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEEEEeccccCCCccEEEEEc--CCCcEEEEEcCCCcEE
Confidence 9999999999999999999998863 4466665 67789999977763 224777766 8999999999999988
Q ss_pred EEEec---------------------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-
Q 040533 257 HSVDT---------------------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH- 308 (364)
Q Consensus 257 ~~~~~---------------------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~- 308 (364)
..+.. ...|.+++|+ ++++++++.. |+.|++||+.+++....+.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 297 YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA------TSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG------GTEEEEEETTCGGGCEEEECC
T ss_pred EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC------CCeEEEEECCCcccceEEecc
Confidence 88762 2347888888 7788888754 99999999999887776665
Q ss_pred ------------------------------------cccceeEEeecCC--CCEEEEEeCCCcEEEEE
Q 040533 309 ------------------------------------QTSRILELSQSPD--GLTVVSAAADETLRFWE 338 (364)
Q Consensus 309 ------------------------------------~~~~i~~i~~~~~--~~~l~~~~~dg~i~vw~ 338 (364)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7889999999998 78999999999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=284.63 Aligned_cols=275 Identities=12% Similarity=0.122 Sum_probs=223.8
Q ss_pred ccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 51 MDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 51 ~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
..|+++ .+++++.|+.|++||+.+++... .+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 180 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQRE--IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEEEE--ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcceee--ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence 345554 46677789999999999887643 34589999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec---ccCcEE---------------------EEEEcCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA---HTAEVC---------------------GLKWSNE 184 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~v~---------------------~~~~~~~ 184 (364)
...|.+++|+| ++++|++++.||.|++||+++++. ...+.. +...+. +++|+|+
T Consensus 181 ~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (420)
T 3vl1_A 181 RATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY 258 (420)
T ss_dssp SSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred CCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence 99999999999 999999999999999999987764 444443 334444 4556789
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-EEEEe--
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC-IHSVD-- 260 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~-- 260 (364)
+++|++++.||.|++||++.... +..+ ..|...|.+++|+|++..++++++ .||.|++||+++++. +..+.
T Consensus 259 ~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 259 GKYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp TEEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEES
T ss_pred CCEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhcc
Confidence 99999999999999999887532 3333 457889999999999976888876 899999999998743 55554
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc---------eeeeccccccceeEEeecCCCC---EEEEE
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT---------KWGELQHQTSRILELSQSPDGL---TVVSA 328 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~i~~~~~~~---~l~~~ 328 (364)
+...+.++.+ +++.+++++. .|+.|++|++.... ....+..|...|.+++|+|+++ .|+++
T Consensus 334 ~~~~v~~~~~-~~~~~l~s~~------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~ 406 (420)
T 3vl1_A 334 EGTPINNVYF-AAGALFVSSG------FDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV 406 (420)
T ss_dssp TTSCEEEEEE-ETTEEEEEET------TTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred CCCCceEEEe-CCCCEEEEec------CCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence 3466777755 5777888774 49999999987732 2223456788999999999999 78888
Q ss_pred eCCCcEEEEEeeC
Q 040533 329 AADETLRFWEAFG 341 (364)
Q Consensus 329 ~~dg~i~vw~~~~ 341 (364)
+.+|.+.+|+++.
T Consensus 407 g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 407 GKNNFCALYNLSN 419 (420)
T ss_dssp ETTTEEEEEESCC
T ss_pred cCCceEEEEeccC
Confidence 8899999999865
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=285.09 Aligned_cols=283 Identities=16% Similarity=0.264 Sum_probs=230.0
Q ss_pred eecccCCCccEEE---EEeCCeEEEEECCCCce--eeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCc--
Q 040533 48 SNMMDWGRNNILA---IALGLELYLWKQENGEV--QKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETS-- 119 (364)
Q Consensus 48 ~~~~~~~~~~~~~---~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~-- 119 (364)
...++++++.... ++.+|.|++|++..... .....+.+|...|++++|+| ++++|++|+.||.|+|||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4557777765332 46789999999865432 22334568999999999999 9999999999999999999987
Q ss_pred -----ceeeeeecCCCcEEEEEeecCCC-CEEEEeeCCCcEEEEEcccCcceeeee--ecccCcEEEEEEcCCCCEEEEE
Q 040533 120 -----KLIRNLEGHDKRVATASWNHWNG-HILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCGLKWSNEGNLLASG 191 (364)
Q Consensus 120 -----~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~ 191 (364)
+.+..+.+|...|.+++|+| ++ ++|++++.||.|++||+++++. ...+ ..|...|.+++|+|++++|+++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 56788889999999999999 65 7999999999999999997764 5555 7899999999999999999999
Q ss_pred eCCCeEEEEeCCCCCCCcceEEe-cccccc-eeEEEEccCCCcEEEee-cCCCCCeEEEEECCCCeE---EEEEecCCCe
Q 040533 192 GDDNLVHVWDHSKMSSSKCLHRF-RDHRAA-VKALAWCPYQFNVLASG-GGTQDGCIKIWNVQKGTC---IHSVDTKAQI 265 (364)
Q Consensus 192 ~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~~~---~~~~~~~~~v 265 (364)
+.|+.|++||++.. +.+..+ ..|.+. +.++.|+|++ .+++++ .++.|+.|++||+++++. ...+.+...+
T Consensus 195 ~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 195 CRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp ETTSEEEEEETTTT---EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred ecCCcEEEEeCCCC---ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 99999999998864 446666 577665 8999999998 566665 012799999999998654 3333456789
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeeccc--cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQH--QTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
.+++|+|++++++++. +.|+.|++||+.++++ +..+.. |...|.+++|+|++.++++ .++.+++|++.++
T Consensus 271 ~~~~~s~~~~~l~~~g-----~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCG-----KGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEEEETTTTEEEEEE-----TTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred eEEEEcCCCCEEEEEE-----cCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 9999999999987542 3499999999998884 444444 4589999999999998774 5679999999875
Q ss_pred C
Q 040533 343 S 343 (364)
Q Consensus 343 ~ 343 (364)
.
T Consensus 344 ~ 344 (402)
T 2aq5_A 344 K 344 (402)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=274.52 Aligned_cols=259 Identities=19% Similarity=0.306 Sum_probs=217.1
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc----ceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEE
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----KLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINH 157 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~ 157 (364)
+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+|. ++++|++++.||.|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 3589999999999999999999999999999999876 466777889999999999984 48999999999999999
Q ss_pred EcccCc--------ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEE----------eccc
Q 040533 158 DVRVSN--------NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHR----------FRDH 217 (364)
Q Consensus 158 d~~~~~--------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~ 217 (364)
|++.+. .....+..|...|.+++|+|+ +.+|++++.||.|++||++.......... ...|
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 998764 345667789999999999999 99999999999999999987654222211 1246
Q ss_pred ccceeEEEEccC--CCcEEEeecCCCCCeEEEEECCCCeE--EEEEe-cCCCeEEEEEcCCc----cceeeeccCCccCC
Q 040533 218 RAAVKALAWCPY--QFNVLASGGGTQDGCIKIWNVQKGTC--IHSVD-TKAQICGLEWNRHH----KEILSGHGFSSSGD 288 (364)
Q Consensus 218 ~~~v~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~-~~~~v~~~~~~~~~----~~l~~~~~~~~~~~ 288 (364)
...+.+++|+|+ ...++++++ .++.+.+|+...++. +..+. +...|.+++|+|++ .+++++..
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~------ 238 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK------ 238 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET------
T ss_pred ccceeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC------
Confidence 778999999997 235666665 799998888887765 44443 45789999999998 78888754
Q ss_pred CCeEEEeeCCCC----------------------------------------------ceeeeccccccceeEEeecCCC
Q 040533 289 GQKLCLWKYPHM----------------------------------------------TKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 289 ~~~i~i~d~~~~----------------------------------------------~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
|+.|++||+.++ +.+..+.+|...|++++|+|++
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 999999999764 5667778899999999999999
Q ss_pred CEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 323 LTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
++|++++.||.|++|++.+++....+.
T Consensus 319 ~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp CCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred CEEEEecCCCcEEEEecCcCcchhhee
Confidence 999999999999999999887665543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=290.01 Aligned_cols=247 Identities=12% Similarity=0.256 Sum_probs=207.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-----------eeeeeecCC------------CcEEEEEeecCC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-----------LIRNLEGHD------------KRVATASWNHWN 141 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 141 (364)
.+.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+| +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence 457899999999999999999999999999998876 477888998 8899999999 7
Q ss_pred C--CEEEEeeCCCcEEEEEcccCcce---------------------------------------eeeeecccCcEEEEE
Q 040533 142 G--HILTSGSQDKSIINHDVRVSNNV---------------------------------------TSRINAHTAEVCGLK 180 (364)
Q Consensus 142 ~--~~l~~~~~dg~i~~~d~~~~~~~---------------------------------------~~~~~~~~~~v~~~~ 180 (364)
+ .+|++++.|+.|++||+..+... .....+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 6 79999999999999999764321 012357999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE-------EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH-------RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
|+|++++|++| .|+.|++||++... ..+. .+.+|...|.+++|+|++..++++++ .||.|++||++++
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMRAS 259 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETTTC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECcCC
Confidence 99999999998 79999999987422 2222 35678999999999999867788876 8999999999998
Q ss_pred eE----EEEEecCC-------------CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeeeccccccc---
Q 040533 254 TC----IHSVDTKA-------------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQHQTSR--- 312 (364)
Q Consensus 254 ~~----~~~~~~~~-------------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~--- 312 (364)
+. ...+..+. .+.+++|+|++++++++. ++.|++||+++ ++++..+..|...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~v~iwd~~~~~~~~~~~~~~~~~~~~ 332 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-------YLSVKVWDLNMENRPVETYQVHEYLRSK 332 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-------SSEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-------CCeEEEEeCCCCccccceeecccccccc
Confidence 86 66776553 899999999999999874 49999999997 8888888888642
Q ss_pred ------------eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 313 ------------ILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 313 ------------i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
+..++|+|++++|++|+.||.|++||+.+++.
T Consensus 333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 23499999999999999999999999988764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=275.66 Aligned_cols=289 Identities=16% Similarity=0.215 Sum_probs=228.4
Q ss_pred eeecccCCC-cc--EEEEEeCCeEEEEECCCCceeeeeee-----------cCCCCCceEEEEcC-CCCEEEEEecCCcE
Q 040533 47 YSNMMDWGR-NN--ILAIALGLELYLWKQENGEVQKLLKV-----------TGEDDFPTSISWSQ-DAKTLAVGYMASKL 111 (364)
Q Consensus 47 ~~~~~~~~~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 111 (364)
.+.+++|+| ++ +++++.||.|++||+.+++....... .+|...|.+++|+| ++++|++++.||.|
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 478888888 43 66777899999999998765444332 25999999999999 77899999999999
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecC--CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EE
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHW--NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LL 188 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 188 (364)
++||+.+++....+. +...+.++.|+|. ++.++++++.||.|++||++++.. ...+..|...|.+++|+|+++ ++
T Consensus 125 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 125 KVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEE
T ss_pred EEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999888877 7788999999883 233999999999999999987764 667788999999999999988 58
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEe---------------cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRF---------------RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
++++.||.|++||++.... .+..+ ..|...|.+++|+|++. .+++++ .|+.|++||+.++
T Consensus 203 ~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~vwd~~~~ 277 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASG--CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVG--TDNRMRLWNSSNG 277 (408)
T ss_dssp EEEETTSCEEEEETTCSSC--CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTC
T ss_pred EEEcCCCcEEEEECCCCCc--ccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEec--CCCeEEEEECCCC
Confidence 9999999999999986531 22222 56888999999999985 455554 7999999999988
Q ss_pred eEEEEEecC------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEE
Q 040533 254 TCIHSVDTK------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 254 ~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 327 (364)
+........ ..+........+..++++.. ++.|++||+.+++.+..+.+|...|++++|+|++++|++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY------GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE------TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred ccceeccccccccccccceeEEecCCCceEEEEec------CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 765443221 11222222233334444432 899999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEeeCCCCCcce
Q 040533 328 AAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~~~~~~ 348 (364)
++.||.|++||+.+.+.+...
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp EETTSCEEEEEECC-------
T ss_pred ECCCCeEEEEeCCCCCccCCC
Confidence 999999999999998776543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=300.28 Aligned_cols=270 Identities=20% Similarity=0.272 Sum_probs=225.3
Q ss_pred eecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCc-----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 82 KVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETS-----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
.+.+|.+.|++++|+|++ ++|++|+.||+|++|++.+. .....+.+|...|.+++|+| ++++|++|+.||+|+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELR 455 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEE
Confidence 456999999999999864 79999999999999998763 34567889999999999999 999999999999999
Q ss_pred EEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC-cEE
Q 040533 156 NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF-NVL 234 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 234 (364)
+||+.++.. ...+.+|...|.+++|+|++++|++++.|++|++||+.............+|...|.+++|+|++. .++
T Consensus 456 vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 456 LWDLAAGVS-TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp EEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred EEECCCCcc-eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 999987764 667889999999999999999999999999999999754321111111246888999999999873 467
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI 313 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 313 (364)
++++ .|+.|++||+++++....+.. ...|.+++|+|++++++++.. |+.|++||+.+++.+..+..+ ..|
T Consensus 535 ~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~------Dg~i~iwd~~~~~~~~~~~~~-~~v 605 (694)
T 3dm0_A 535 VSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK------DGVVLLWDLAEGKKLYSLEAN-SVI 605 (694)
T ss_dssp EEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET------TSBCEEEETTTTEEEECCBCS-SCE
T ss_pred EEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCceEEEecCC-CcE
Confidence 7776 899999999999999888865 477999999999999998854 999999999999998887654 579
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc-------------------CCceeeeeeccC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH-------------------LDGLLSLKVSPI 363 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------------------~~~v~~~~~sp~ 363 (364)
.+++|+|++.+|++++ |+.|++||+.+++.+..+..+ .-.+++++|||.
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 9999999998887765 566999999887665544321 123788999985
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-39 Score=283.56 Aligned_cols=284 Identities=10% Similarity=0.200 Sum_probs=224.1
Q ss_pred CCCcceeecccCCCcc--EEEEEeCCeEEEEECCCCce---------eeeeeecCCC------------CCceEEEEcCC
Q 040533 42 LRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEV---------QKLLKVTGED------------DFPTSISWSQD 98 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~s~~ 98 (364)
+...-.+.+++|+|++ +++++.||.|++||+.+++. .....+.+|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 3444568999999864 66677899999999987652 1244556898 88999999999
Q ss_pred C--CEEEEEecCCcEEEEecCCccee---------------------------------------ee-eecCCCcEEEEE
Q 040533 99 A--KTLAVGYMASKLQLWDAETSKLI---------------------------------------RN-LEGHDKRVATAS 136 (364)
Q Consensus 99 ~--~~l~~~~~dg~i~iw~~~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 136 (364)
+ .+|++++.||.|++||+.++... .. ..+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 79999999999999999765432 12 357999999999
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceee-------eeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCC-
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTS-------RINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSS- 207 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~- 207 (364)
|+| ++++|++| .|+.|++||++....... .+..|...|.+++|+|++ ++|++++.||.|++||++....
T Consensus 185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 999 99999998 799999999985443333 356899999999999998 9999999999999999987542
Q ss_pred CcceEEeccccc------------ceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEecCCC----------
Q 040533 208 SKCLHRFRDHRA------------AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVDTKAQ---------- 264 (364)
Q Consensus 208 ~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~---------- 264 (364)
...+..+..|.. .|.+++|+|++. ++++++ . +.|++||+++ ++++..+..+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee--C-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 222566777765 899999999984 566665 5 9999999997 887777776643
Q ss_pred ------eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-------------------------------
Q 040533 265 ------ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ------------------------------- 307 (364)
Q Consensus 265 ------v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~------------------------------- 307 (364)
+..++|+|++++|+++.. |+.|++||+.+++.+. +.
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~------dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSY------NNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECS------TTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred ccccccceEEEECCCCCEEEEecc------CCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccc
Confidence 234999999999988854 9999999999887653 11
Q ss_pred --ccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 308 --HQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 308 --~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
.+...|..++|+|++.+||+++.++ +++|.-
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345688999999999999998875 777764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=304.41 Aligned_cols=304 Identities=11% Similarity=0.104 Sum_probs=234.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++|+..+.+.... + .|...|.+++|+| +++|++++.|++|+|||+.+++.+..
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--L-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--C-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--c-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence 37888999864 55667799999999887664322 2 5788999999999 88999999999999999999998888
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee----------eeeecccCcEEEEEEcCC-CCEEEEEeC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT----------SRINAHTAEVCGLKWSNE-GNLLASGGD 193 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 193 (364)
+. |...|++++|+| ++++|++|+.||.|++||++++.... ....+|.++|.+++|+|+ +..+++|+.
T Consensus 95 ~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~ 172 (902)
T 2oaj_A 95 VF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE 172 (902)
T ss_dssp EE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred Ec-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence 86 778999999999 99999999999999999998765321 234578899999999995 578999999
Q ss_pred CCeEEEEeCCCCCCCcceEEeccc------------------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDH------------------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
|+.| +||++.. +.+..+..| ...|.+++|+|++ .++++++ .|+.|++||++++++
T Consensus 173 dg~v-lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs--~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 173 YVTL-TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIH--EDNSLVFWDANSGHM 245 (902)
T ss_dssp SCEE-EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEE--TTCCEEEEETTTCCE
T ss_pred CCcE-EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEE--CCCeEEEEECCCCcE
Confidence 9999 9998764 335555444 4779999999998 5667766 899999999999988
Q ss_pred EEEEe-------------------cCCCeEEEEEc----CCc-cceeeeccC----------------------------
Q 040533 256 IHSVD-------------------TKAQICGLEWN----RHH-KEILSGHGF---------------------------- 283 (364)
Q Consensus 256 ~~~~~-------------------~~~~v~~~~~~----~~~-~~l~~~~~~---------------------------- 283 (364)
+.... +...|.+++|+ |++ ..+++|..-
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 76421 12368999995 443 344444100
Q ss_pred ------------------------------------------CccCCCCeEEEeeCCCCceeee----------------
Q 040533 284 ------------------------------------------SSSGDGQKLCLWKYPHMTKWGE---------------- 305 (364)
Q Consensus 284 ------------------------------------------~~~~~~~~i~i~d~~~~~~~~~---------------- 305 (364)
...+.++.|++||+.++.....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 0112357899999876643321
Q ss_pred -------------------------ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc--cee---------
Q 040533 306 -------------------------LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG--DFV--------- 349 (364)
Q Consensus 306 -------------------------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~--------- 349 (364)
+.+|...+..++|+|++++|++|+.||+|++||+.++.... .+.
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 23344445566778999999999999999999999875421 121
Q ss_pred ccCCceeeeeeccC
Q 040533 350 SHLDGLLSLKVSPI 363 (364)
Q Consensus 350 ~~~~~v~~~~~sp~ 363 (364)
+|...|++|+|||.
T Consensus 486 ~h~~~V~svafspd 499 (902)
T 2oaj_A 486 AKELAVDKISFAAE 499 (902)
T ss_dssp SSSCCEEEEEEETT
T ss_pred CCCCceeEEEecCC
Confidence 78899999999995
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=275.00 Aligned_cols=251 Identities=19% Similarity=0.327 Sum_probs=213.4
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--CcceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEE
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE--TSKLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINH 157 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~ 157 (364)
.+.+|...|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|.+++|+| + +++|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEE
Confidence 445899999999999999999999999999999998 6677788899999999999987 5 8999999999999999
Q ss_pred EcccCc-ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccC-----
Q 040533 158 DVRVSN-NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY----- 229 (364)
Q Consensus 158 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 229 (364)
|+.++. .....+..|...|.+++|+|+ +.+|++++.|+.|++||++.... .....+..|...|.+++|+|.
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-CCEEEEECCTTCEEEEEECCCC----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-eeeEEecCCCCceEEEEEcCcccccc
Confidence 999775 235667789999999999999 99999999999999999987643 334566788999999999994
Q ss_pred -------CCcEEEeecCCCCCeEEEEECCCCe----EEEEEe-cCCCeEEEEEcCC---ccceeeeccCCccCCCCeEEE
Q 040533 230 -------QFNVLASGGGTQDGCIKIWNVQKGT----CIHSVD-TKAQICGLEWNRH---HKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 230 -------~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~-~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~~~i~i 294 (364)
...++++++ .|+.|++||++++. ....+. +...|.+++|+|+ +.+++++.. |+.|++
T Consensus 164 ~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~------dg~i~i 235 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCII 235 (379)
T ss_dssp ------CTTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEE
T ss_pred ccccCCCCCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC------CCEEEE
Confidence 235666665 89999999998764 334444 3577999999999 899998854 999999
Q ss_pred eeCCCCc-----eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 295 WKYPHMT-----KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 295 ~d~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
||+.++. .+.....|...|++++|+|+|++|++++.||.|++|++...
T Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9998864 22233458889999999999999999999999999999854
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=315.02 Aligned_cols=302 Identities=14% Similarity=0.189 Sum_probs=263.7
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
.+.+++|+|+ ..++++.++.+.+||..++....... .+|...|.+++|+|+++++++|+.||.|++||+.++..+..+
T Consensus 800 ~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 800 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH-TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp CBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE-CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc-CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence 4778899986 47777779999999999988655443 388999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce------------------------------------eeee
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV------------------------------------TSRI 169 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------------------------------------~~~~ 169 (364)
.+|...|.+++|+| ++..|++++.||.|++||+...... ....
T Consensus 879 ~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957 (1249)
T ss_dssp CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred CCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence 99999999999999 9999999999999999997642100 0011
Q ss_pred ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEE
Q 040533 170 NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 249 (364)
..+...+.+++|+|+++++++|+.+|.|++||+... .....+.+|...|.+++|+|+++.+ ++++ .||.|++||
T Consensus 958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~--~dg~i~vwd 1031 (1249)
T 3sfz_A 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN---RVFSSGVGHKKAVRHIQFTADGKTL-ISSS--EDSVIQVWN 1031 (1249)
T ss_dssp EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT---SCEEECCCCSSCCCCEEECSSSSCE-EEEC--SSSBEEEEE
T ss_pred EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC---ceeeecccCCCceEEEEECCCCCEE-EEEc--CCCEEEEEE
Confidence 123467999999999999999999999999998765 4477788999999999999999654 5554 799999999
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 250 VQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
+.+++......+...+.++.|+|++..+..+ .|+.|++||+.+++.+..+.+|...|++++|+|++++|++++
T Consensus 1032 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s 1104 (1249)
T 3sfz_A 1032 WQTGDYVFLQAHQETVKDFRLLQDSRLLSWS-------FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1104 (1249)
T ss_dssp TTTTEEECCBCCSSCEEEEEECSSSEEEEEE-------SSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEE-------CCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc
Confidence 9999888766677889999999988765443 299999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 330 ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.||.|++||+.+++....+.+|.+.|++++|||.
T Consensus 1105 ~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d 1138 (1249)
T 3sfz_A 1105 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138 (1249)
T ss_dssp CSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSS
T ss_pred CCCcEEEEECCCcceeeeeccCCCcEEEEEECCC
Confidence 9999999999999999999999999999999995
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=280.73 Aligned_cols=264 Identities=16% Similarity=0.232 Sum_probs=222.5
Q ss_pred cCCCCCceEEEEcCC----CCEEEEEecCCcEEEEecCCcceeeeeec-----CCCcEEEEEeecCC----CCEEEEeeC
Q 040533 84 TGEDDFPTSISWSQD----AKTLAVGYMASKLQLWDAETSKLIRNLEG-----HDKRVATASWNHWN----GHILTSGSQ 150 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~----~~~l~~~~~ 150 (364)
.+|...|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+| + +.+|++|+.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVAGS 93 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEEET
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEecC
Confidence 389999999999984 45677777788999999998887766654 557899999999 6 679999999
Q ss_pred CCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEe---cccccceeEEEE
Q 040533 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRF---RDHRAAVKALAW 226 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~ 226 (364)
||.|++||+.+++. ...+.+|...|.+++|+| ++++|++++.||.|++||++... .+..+ ..|...|.+++|
T Consensus 94 dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 94 RGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---LVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp TCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE---EEEEECSTTSCSSCEEEEEE
T ss_pred CCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe---EEEEecccccccCceeEEEE
Confidence 99999999987764 667788999999999999 89999999999999999987653 45555 679999999999
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-----------------------------cCCCeEEEEEcCCccce
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-----------------------------TKAQICGLEWNRHHKEI 277 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~l 277 (364)
+|++. .+++++ .|+.|++||+++++....+. +...|.+++|+ +.++
T Consensus 170 ~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 170 DLLGE-KIMSCG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp CTTSS-EEEEEE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred CCCCC-EEEEec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 99885 555655 79999999998765443222 55779999998 6677
Q ss_pred eeeccCCccCCCCeEEEeeCCCCce--------------eeeccccccceeEEeecCC--CCEEEEEeCCCcEEEEEeeC
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTK--------------WGELQHQTSRILELSQSPD--GLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~--------------~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~vw~~~~ 341 (364)
+++.. |+.|++||+.+++. +..+..|...|++++|+|+ +++|++|+.||.|++||+.+
T Consensus 245 ~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 245 LSKSC------ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp EEECS------SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred EEEec------CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 77744 99999999987754 6777889999999999999 99999999999999999998
Q ss_pred CCCCc----ceecc--CCceeeeeeccC
Q 040533 342 PSGSG----DFVSH--LDGLLSLKVSPI 363 (364)
Q Consensus 342 ~~~~~----~~~~~--~~~v~~~~~sp~ 363 (364)
++... .+.+| ...|++++|+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 346 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKCGAAIRQTSFSRD 346 (366)
T ss_dssp SSGGGCEEEEECCTTCCSCEEEEEECTT
T ss_pred CCCccccceEEcccccCCceEEEEeCCC
Confidence 87554 56666 789999999985
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=277.35 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=211.0
Q ss_pred ceeecccCCCcc-EEEEEe--------CCeEEEEECCCCce--------eeeeeecCCCCCceEEEEcCCCCEEEEEe--
Q 040533 46 YYSNMMDWGRNN-ILAIAL--------GLELYLWKQENGEV--------QKLLKVTGEDDFPTSISWSQDAKTLAVGY-- 106 (364)
Q Consensus 46 ~~~~~~~~~~~~-~~~~~~--------~~~i~iw~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 106 (364)
+.+.+++|+|++ +|+++. ++.|++|++..+.. .....+.+|.+.|.+++++ ++.+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 448889999975 444432 23699999876532 1223466888999988775 55676654
Q ss_pred ---------cCCcEEEEecCCcceeee---------eecCCCcEEEEEeecCCCCEEEE--eeCCCcEEEEEcccCccee
Q 040533 107 ---------MASKLQLWDAETSKLIRN---------LEGHDKRVATASWNHWNGHILTS--GSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 107 ---------~dg~i~iw~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~ 166 (364)
.|+.+++|++.+...... ...+...+.+++|+| +++++++ ++.|++|++||+++... .
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~-~ 170 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTE-K 170 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEE-E
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcE-E
Confidence 467899999876532211 122445689999999 9998764 45789999999998765 3
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC---
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--- 243 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--- 243 (364)
..+ .|...|.+++|+|+|+++++++.++ +.+|+..+... ........|...|.+++|+|++..+++.+ .|+
T Consensus 171 ~~~-~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~~s---~d~~~~ 244 (365)
T 4h5i_A 171 FEI-ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC-IARKTDFDKNWSLSKINFIADDTVLIAAS---LKKGKG 244 (365)
T ss_dssp EEE-ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE-EEEECCCCTTEEEEEEEEEETTEEEEEEE---ESSSCC
T ss_pred EEe-CCCCceEEEEEccCCceEEecccee-EEEEEeccCcc-eeeeecCCCCCCEEEEEEcCCCCEEEEEe---cCCcce
Confidence 444 4778899999999999999998655 66666554322 11233456888999999999996555443 354
Q ss_pred -eEEEEECCCCeEE----EEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec-cccccceeEE
Q 040533 244 -CIKIWNVQKGTCI----HSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL-QHQTSRILEL 316 (364)
Q Consensus 244 -~i~i~d~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~i 316 (364)
.+++|++...... ..+. +...|++++|+|+|++|++|.. |+.|+|||+.+++++..+ .+|...|+++
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~------D~~V~iwd~~~~~~~~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN------DNSIALVKLKDLSMSKIFKQAHSFAITEV 318 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET------TSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC------CCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence 6889998776542 2333 3467999999999999999854 999999999999999874 7899999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+|+|||++||+||.|++|+||++...
T Consensus 319 ~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 319 TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=287.06 Aligned_cols=268 Identities=16% Similarity=0.193 Sum_probs=218.8
Q ss_pred ecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCccee--eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 83 VTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLI--RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
..+|...|+|++|+| ++++||+|+.||.|+|||+.+++.. ..+.+|.+.|++++|+|.++++|++|+.||+|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 347888999999999 5679999999999999999877544 4456799999999999977899999999999999999
Q ss_pred ccCcceeeeee--cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 160 RVSNNVTSRIN--AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 160 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
++... ..... .+...+.+++|+|++++|++|+.||.|++||++. +.+..+.+|...|.+++|+|++..+++++
T Consensus 195 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 195 KGNIL-RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG----KELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp TSCEE-EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred cCCce-eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc----ceeEEEecccceEEeeeecCCCceEEEEe
Confidence 75432 22222 2345678999999999999999999999999864 34667788999999999999998899988
Q ss_pred cCCCCCeEEEEECCCCeEEEEE----ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc--
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS-- 311 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-- 311 (364)
+ .|+.|++||+++.+....+ .+...|.+++|+|+|.+|+++.. |+.|++||+.+++....+..|..
T Consensus 270 s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~------D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 270 S--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ------KSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp E--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES------SSCEEEEESSSSSSEEEECCCCCCC
T ss_pred c--CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC------CCEEEEEECCCCccceEEecccccc
Confidence 7 8999999999886544332 34578999999999999998854 99999999999988877765542
Q ss_pred ----ceeEEeecCCCCEEEEEe------------CCCcEEEEEeeCCCCCccee-ccCCceeee-eeccC
Q 040533 312 ----RILELSQSPDGLTVVSAA------------ADETLRFWEAFGPSGSGDFV-SHLDGLLSL-KVSPI 363 (364)
Q Consensus 312 ----~i~~i~~~~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~-~~sp~ 363 (364)
.+....|+|++.++++++ .++.|++||..+++.+..+. +|...|.++ +|||.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd 411 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM 411 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC
Confidence 234567778777777664 33579999999998877765 678889988 69985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=293.28 Aligned_cols=275 Identities=8% Similarity=0.079 Sum_probs=208.1
Q ss_pred eecccCCCc-------c-EEEEEeCCeEEEEECCCCcee---------eeeeecCCCCCceEEEEcCCCCEEEEEecCCc
Q 040533 48 SNMMDWGRN-------N-ILAIALGLELYLWKQENGEVQ---------KLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110 (364)
Q Consensus 48 ~~~~~~~~~-------~-~~~~~~~~~i~iw~~~~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 110 (364)
+..++|+|+ + +++++.|+.|++||+.+++.. ....+.+|...|++++|+++ ..|++|+.||+
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~Dgt 288 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGF 288 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSE
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCE
Confidence 677889875 3 555778999999999876421 12356689999999999986 48999999999
Q ss_pred EEEEecCCcc-eeeeeecCCCcEEEE--EeecCCC-CEEEEeeCCCcEEEEEcccCcceeeeeecccC--cEEEEEEcCC
Q 040533 111 LQLWDAETSK-LIRNLEGHDKRVATA--SWNHWNG-HILTSGSQDKSIINHDVRVSNNVTSRINAHTA--EVCGLKWSNE 184 (364)
Q Consensus 111 i~iw~~~~~~-~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~v~~~~~~~~ 184 (364)
|++||++++. ....+.+|...|.++ +|+| ++ .+|++|+.|++|++||+++.+. ...+.+|.. .|.+++|+|+
T Consensus 289 V~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~ 366 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQ 366 (524)
T ss_dssp EEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETT
T ss_pred EEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCC
Confidence 9999999774 445688999999999 5677 76 8999999999999999987664 344555543 5789999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---- 260 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---- 260 (364)
++.+++++.|++|++||++... .+..+.+|.+.|++++|+|+++. +++|+ .|++|++||+..+ .+....
T Consensus 367 ~~~l~s~~~d~tv~lwd~~~~~---~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs--~Dgtv~lwd~~~~-~~~~~~~~~~ 439 (524)
T 2j04_B 367 IYSYIYSDGASSLRAVPSRAAF---AVHPLVSRETTITAIGVSRLHPM-VLAGS--ADGSLIITNAARR-LLHGIKNSSA 439 (524)
T ss_dssp TTEEEEECSSSEEEEEETTCTT---CCEEEEECSSCEEEEECCSSCCB-CEEEE--TTTEEECCBSCSS-TTTCC-----
T ss_pred cCeEEEeCCCCcEEEEECcccc---cceeeecCCCceEEEEeCCCCCe-EEEEE--CCCEEEEEechHh-hccccccCcc
Confidence 9999999999999999988753 36677889999999999999964 55665 8999999998654 221111
Q ss_pred --cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-CCceeeeccccccceeEEeecCCCC---EEEEEeCCCcE
Q 040533 261 --TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQTSRILELSQSPDGL---TVVSAAADETL 334 (364)
Q Consensus 261 --~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~---~l~~~~~dg~i 334 (364)
....+..++|+|++..+.. .....+|+.. ++..+..+.+|...|.+++|+|+++ .||+|+.||.|
T Consensus 440 ~~~~~~v~~v~~sp~g~~~~~---------~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~v 510 (524)
T 2j04_B 440 TQKSLRLWKWDYSIKDDKYRI---------DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLL 510 (524)
T ss_dssp -CCCCEEEECBCCSSSCEEEE---------CCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred ceeeeEEEEeccCCCCCeEEc---------cCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceE
Confidence 1124678999999885432 2233445443 5677788899999999999999964 99999999999
Q ss_pred EEEEeeC
Q 040533 335 RFWEAFG 341 (364)
Q Consensus 335 ~vw~~~~ 341 (364)
+||++..
T Consensus 511 rlw~l~~ 517 (524)
T 2j04_B 511 TLEYLSL 517 (524)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9999764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=283.79 Aligned_cols=276 Identities=17% Similarity=0.227 Sum_probs=221.5
Q ss_pred EEECCCCceeeeeee-cCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCC---cc---eeeeeecCCCcEEEEEeecC
Q 040533 69 LWKQENGEVQKLLKV-TGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAET---SK---LIRNLEGHDKRVATASWNHW 140 (364)
Q Consensus 69 iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~---~~---~~~~~~~~~~~v~~~~~~~~ 140 (364)
.|+.. ++. +..+ .+|.+.|++++|+| ++++|++|+.||.|+|||+.+ +. ....+ .|...|.+++|+|
T Consensus 47 ~w~~~-g~~--~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~- 121 (437)
T 3gre_A 47 MGNLR-GKL--IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIP- 121 (437)
T ss_dssp GGGCC-CCE--EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECT-
T ss_pred ccccc-ceE--EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeC-
Confidence 37743 333 3344 58999999999999 999999999999999999876 43 22233 4899999999999
Q ss_pred CCCEEEEeeCCCcEEEEEcc---cCcceeeeeec------------ccCcEEEEE--EcCCCCEEEEEeCCCeEEEEeCC
Q 040533 141 NGHILTSGSQDKSIINHDVR---VSNNVTSRINA------------HTAEVCGLK--WSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
++++|++++.||.|++||++ .+.. ...... +...+.++. +++++.+|++++.|+.|++||++
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 200 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR 200 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999995 3322 222221 445666666 56789999999999999999987
Q ss_pred CCCCCcceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--cCCCeEEEEEc----CCcc
Q 040533 204 KMSSSKCLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--TKAQICGLEWN----RHHK 275 (364)
Q Consensus 204 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~----~~~~ 275 (364)
.. +.+..+.. |...|.+++|+|++ .++++++ .||.|++||+++++++..+. +...|.+++|+ |++.
T Consensus 201 ~~---~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 201 TL---ERLQIIENSPRHGAVSSICIDEEC-CVLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp TC---CEEEEEECCGGGCCEEEEEECTTS-CEEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred CC---eeeEEEccCCCCCceEEEEECCCC-CEEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc
Confidence 74 44777777 88999999999998 5666665 89999999999999998874 45679999555 5688
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeeccc--------------------------cccceeEEeecCCCCEEEEEe
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--------------------------QTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------------------------~~~~i~~i~~~~~~~~l~~~~ 329 (364)
+++++.. |+.|++||+.+++.+..+.+ |...|++++|+ ++++|++|+
T Consensus 275 ~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 275 IVVGGSS------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp EEEEEST------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred EEEEEcC------CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 8888754 99999999999887766653 55568888888 778999999
Q ss_pred CCCcEEEEEeeCCCCCcceec-------------------------------------cCCceeeeeeccC
Q 040533 330 ADETLRFWEAFGPSGSGDFVS-------------------------------------HLDGLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~sp~ 363 (364)
.||.|++||+.+++....+.+ |.+.|++++|+|.
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV 418 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence 999999999999887776665 7889999999875
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-39 Score=273.41 Aligned_cols=260 Identities=10% Similarity=0.123 Sum_probs=222.2
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---eeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEc
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---LIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDV 159 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~ 159 (364)
.+|.+.|++++|+|++++|++|+.||.|++|++.+++ ....+..|...|.+++|+| +++ +|++|+.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEe
Confidence 4899999999999999999999999999999998877 3455567999999999999 899 9999999999999999
Q ss_pred -ccCcceeeeeec--ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC------CcceEEecccccceeEEEEccCC
Q 040533 160 -RVSNNVTSRINA--HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS------SKCLHRFRDHRAAVKALAWCPYQ 230 (364)
Q Consensus 160 -~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~ 230 (364)
.++. ...+.. |...|.+++|+| ++++++++.|+.|++||++.... .+++..+. |...|.+++|+|++
T Consensus 87 ~~~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 87 IGSPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred ccCCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 7665 356677 999999999999 99999999999999999875100 12244444 78899999999976
Q ss_pred CcEEEeecCCCCCeEEEEECCC-CeEE---EEEecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCC-----
Q 040533 231 FNVLASGGGTQDGCIKIWNVQK-GTCI---HSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHM----- 300 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~-~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~----- 300 (364)
+++++ .|+.|++||+++ +... ....+...+.+++|+| ++++++++.. ++.|++|++...
T Consensus 163 ---l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~------dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 163 ---LIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI------DGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp ---EEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET------TSEEEEEECCTTCCSTT
T ss_pred ---EEEEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec------CCcEEEEEEcCCCcccc
Confidence 55554 799999999988 5432 2223457899999999 9999998854 999999999887
Q ss_pred -ceeeecccccc---------ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc-CCceeeee
Q 040533 301 -TKWGELQHQTS---------RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH-LDGLLSLK 359 (364)
Q Consensus 301 -~~~~~~~~~~~---------~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~v~~~~ 359 (364)
+....+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+| .++|.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence 77778887755 9999999999999999999999999999999988888888 99999988
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=276.77 Aligned_cols=252 Identities=23% Similarity=0.394 Sum_probs=217.6
Q ss_pred eecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCC----------cceeeeeecCCCcEEEEEeecCCCC-EEEEee
Q 040533 82 KVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAET----------SKLIRNLEGHDKRVATASWNHWNGH-ILTSGS 149 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~ 149 (364)
....|.+.|++++|+|+ +.+||+|+.+|.|++|++.+ .+....+.+|...|.+++|+| ++. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEEe
Confidence 34488999999999997 68999999999999999986 567788889999999999999 666 999999
Q ss_pred CCCcEEEEEcccCcc------eeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 150 QDKSIINHDVRVSNN------VTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 150 ~dg~i~~~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
.||.|++||+..... ....+..|...|.+++|+| ++.+|++++.|+.|++||++.....+.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987332 1345668999999999999 778999999999999999997654456777888999999
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEe-cCCCeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCC
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVD-TKAQICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
+++|+|++.+++++++ .||.|++||+++ +.++..+. +...|.+++|+|+++. ++++. .|+.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~------~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG------TDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE------TTSCCEEEEGGG
T ss_pred EEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe------CCCcEEEEeCCC
Confidence 9999999988898887 899999999998 55666665 5578999999999975 55553 399999999977
Q ss_pred --------------CceeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCC
Q 040533 300 --------------MTKWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 300 --------------~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~ 342 (364)
.+.+..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 356777788999999999999999 8999999999999998753
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=266.02 Aligned_cols=273 Identities=12% Similarity=0.115 Sum_probs=228.3
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCc-eeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEec-CCcce
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGE-VQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDA-ETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~-~~~~~ 121 (364)
.+.+++|+|++ +++++.|+.|++|++.+++ ........+|...|.+++|+|+++ +|++|+.||.|++||+ .+++.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 92 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence 47888888853 6777789999999998876 112233448899999999999999 9999999999999999 77754
Q ss_pred eeeeec--CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc---------CcceeeeeecccCcEEEEEEcCCCCEEEE
Q 040533 122 IRNLEG--HDKRVATASWNHWNGHILTSGSQDKSIINHDVRV---------SNNVTSRINAHTAEVCGLKWSNEGNLLAS 190 (364)
Q Consensus 122 ~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (364)
..+.. |...|.+++|+| +++|++++.|+.|++||+++ ... ...+. |...|.+++|+|++ +++
T Consensus 93 -~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~--l~~ 165 (342)
T 1yfq_A 93 -QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTNSSR--LIV 165 (342)
T ss_dssp -EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEECSSE--EEE
T ss_pred -EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEecCCc--EEE
Confidence 67778 999999999998 88999999999999999986 443 33443 88999999999987 999
Q ss_pred EeCCCeEEEEeCCC-CCCCcceEEecccccceeEEEEcc-CCCcEEEeecCCCCCeEEEEECCCC------eEEEEEecC
Q 040533 191 GGDDNLVHVWDHSK-MSSSKCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQDGCIKIWNVQKG------TCIHSVDTK 262 (364)
Q Consensus 191 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~------~~~~~~~~~ 262 (364)
++.|+.|++||++. ... ........|...+.+++|+| ++. ++++++ .||.|++|++... +....+..+
T Consensus 166 ~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 166 GMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQE-GYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGC-EEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred EeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCC-EEEEEe--cCCcEEEEEEcCCCcccccccceeeecc
Confidence 99999999999987 432 22334456788999999999 884 556655 7999999999876 666666544
Q ss_pred ----------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEEeCC
Q 040533 263 ----------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 263 ----------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d 331 (364)
..+.+++|+|++++++++.. |+.|++||+.+++.+..+..| ...|.+++ |++++|++++.|
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecC------CceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 28999999999999998854 999999999999999999998 99999999 999999999999
Q ss_pred Cc-EEEEE
Q 040533 332 ET-LRFWE 338 (364)
Q Consensus 332 g~-i~vw~ 338 (364)
|. .+.+.
T Consensus 314 g~~~~~~~ 321 (342)
T 1yfq_A 314 DTFKTNAA 321 (342)
T ss_dssp THHHHCSS
T ss_pred Cccccccc
Confidence 98 55554
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=258.36 Aligned_cols=243 Identities=19% Similarity=0.315 Sum_probs=200.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcc--e
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSK--L 121 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~--~ 121 (364)
+.+++|+++ .+++++.|+.|++||+.++.......+.+|.+.|.+++|+|+ +++|++|+.||+|+|||+++++ .
T Consensus 12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence 667777774 477788899999999986544445667799999999999874 8999999999999999998874 5
Q ss_pred eeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcCC-------------C
Q 040533 122 IRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSNE-------------G 185 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~-------------~ 185 (364)
+..+..|...|.+++|+| + +.+|++++.|+.|++||++.... ....+.+|...|.+++|+|+ +
T Consensus 92 ~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~ 170 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (297)
T ss_dssp CEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------C
T ss_pred EEEeecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence 566778999999999999 5 78999999999999999987642 24567789999999999996 5
Q ss_pred CEEEEEeCCCeEEEEeCCCCCC-CcceEEecccccceeEEEEccCC--CcEEEeecCCCCCeEEEEECCCCe---EEEEE
Q 040533 186 NLLASGGDDNLVHVWDHSKMSS-SKCLHRFRDHRAAVKALAWCPYQ--FNVLASGGGTQDGCIKIWNVQKGT---CIHSV 259 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~ 259 (364)
++|++|+.|+.|++||++.... ......+.+|...|.+++|+|++ ..++++++ .|++|++||+++.. ....+
T Consensus 171 ~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~~~~ 248 (297)
T 2pm7_B 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKKTLL 248 (297)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEEES
T ss_pred ceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCccceeee
Confidence 7999999999999999876432 12456788999999999999986 46788876 89999999998743 12222
Q ss_pred ---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 260 ---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 260 ---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.+...+.+++|+|++++|+++.. |+.|++|+...
T Consensus 249 ~~~~~~~~v~~~~~s~~g~~las~~~------D~~v~lw~~~~ 285 (297)
T 2pm7_B 249 KEEKFPDVLWRASWSLSGNVLALSGG------DNKVTLWKENL 285 (297)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEET------TSCEEEEEECT
T ss_pred ecccCCCcEEEEEECCCCCEEEEEcC------CCcEEEEEECC
Confidence 23467999999999999998854 99999999763
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=270.32 Aligned_cols=269 Identities=21% Similarity=0.382 Sum_probs=235.9
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.+++|+++.+++++.|+.|++||+.+++.. ..+.+|...|.+++|+ ++.+++|+.||.|++||+.+++.+..+.+
T Consensus 162 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 237 (445)
T 2ovr_B 162 VWSSQMRDNIIISGSTDRTLKVWNAETGECI--HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMG 237 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred EEEEEecCCEEEEEeCCCeEEEEECCcCcEE--EEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence 5667777777888999999999999998764 4455899999999995 57899999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
|...|.+++| +++++++|+.||.|++||++++.. ...+.+|...|.+++| ++.++++++.|+.|++||+++.
T Consensus 238 ~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-- 309 (445)
T 2ovr_B 238 HVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETC-LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-- 309 (445)
T ss_dssp CSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEE-EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC--
T ss_pred CcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcE-eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC--
Confidence 9999999999 788999999999999999987764 6677889999999999 7889999999999999998765
Q ss_pred CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEcCCccceeeeccC
Q 040533 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
+.+..+.+|...+.++.+++ .++++++ .||.|++||+++++.+..+. +...|.+++|+ +.+++++..
T Consensus 310 -~~~~~~~~~~~~v~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~- 380 (445)
T 2ovr_B 310 -NCIHTLTGHQSLTSGMELKD---NILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD- 380 (445)
T ss_dssp -CEEEEECCCCSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET-
T ss_pred -CEEEEEcCCcccEEEEEEeC---CEEEEEe--CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC-
Confidence 45788888999999988864 4667765 89999999999999999887 44679999996 567887754
Q ss_pred CccCCCCeEEEeeCCCCceeeec-----cccccceeEEeecCCCCEEEEEeCCCc----EEEEEeeCC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGEL-----QHQTSRILELSQSPDGLTVVSAAADET----LRFWEAFGP 342 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~dg~----i~vw~~~~~ 342 (364)
||.|++||+.+++.+..+ ..|.+.|.+++|+|++.+|++|+.||+ |.+||+...
T Consensus 381 -----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 381 -----DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp -----TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred -----CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999999998887 468889999999999999999999998 999998764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=267.87 Aligned_cols=243 Identities=23% Similarity=0.378 Sum_probs=201.3
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCcc--
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETSK-- 120 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~-- 120 (364)
.+.+++|+++ .+++++.|+.|++||+.+++......+.+|.+.|.+++|+| ++++|++|+.|++|++||+++++
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~ 94 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE 94 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce
Confidence 3777888875 36778889999999998876555667779999999999986 48999999999999999998873
Q ss_pred eeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcc--eeeeeecccCcEEEEEEcCC------------
Q 040533 121 LIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNN--VTSRINAHTAEVCGLKWSNE------------ 184 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~------------ 184 (364)
....+.+|...|.+++|+| + +.+|++|+.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 95 ~~~~~~~h~~~V~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 173 (316)
T 3bg1_A 95 KSHEHAGHDSSVNSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSG 173 (316)
T ss_dssp EEEEECCCSSCCCEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCS
T ss_pred EEEEccCCCCceEEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccc
Confidence 5667788999999999999 5 78999999999999999986542 23456689999999999997
Q ss_pred -----CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC---CcEEEeecCCCCCeEEEEECCCC---
Q 040533 185 -----GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ---FNVLASGGGTQDGCIKIWNVQKG--- 253 (364)
Q Consensus 185 -----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~--- 253 (364)
+++|++|+.|+.|++||++.....+.+..+.+|...|.+++|+|++ ..++++++ .|++|++||+.+.
T Consensus 174 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s--~D~~v~iw~~~~~~~~ 251 (316)
T 3bg1_A 174 QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS--QDGRVFIWTCDDASSN 251 (316)
T ss_dssp CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE--TTCEEEEEECSSTTCC
T ss_pred cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc--CCCeEEEEEccCcccc
Confidence 4689999999999999986543334567788999999999999986 35778876 8999999999762
Q ss_pred e-EEEE-EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 254 T-CIHS-VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 254 ~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
. .... ..+...|.+++|+|++++|+++.. |+.|++|+..
T Consensus 252 ~~~~~~~~~~~~~v~~v~~sp~g~~las~~~------D~~v~lw~~~ 292 (316)
T 3bg1_A 252 TWSPKLLHKFNDVVWHVSWSITANILAVSGG------DNKVTLWKES 292 (316)
T ss_dssp CCBCCEEEECSSCEEEEEECTTTCCEEEEES------SSCEEEEEEC
T ss_pred chhhhhhhcCCCcEEEEEEcCCCCEEEEEcC------CCeEEEEEEC
Confidence 1 1112 235678999999999999998854 9999999975
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=263.69 Aligned_cols=266 Identities=13% Similarity=0.166 Sum_probs=219.7
Q ss_pred eeeecCCCCCceEEEEcCC---CCEEEEEecCCcEEEEecCC-ccee-eeeecCCCcEEEEEeecCCCCEEEEeeCCCcE
Q 040533 80 LLKVTGEDDFPTSISWSQD---AKTLAVGYMASKLQLWDAET-SKLI-RNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 154 (364)
...+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+| ++++|++++.||.|
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTA 110 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcE
Confidence 3445699999999999999 69999999999999999987 5544 77888999999999999 99999999999999
Q ss_pred EEEEcccCcceeeeeecccCcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 155 INHDVRVSNNVTSRINAHTAEVCGLKW--SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
++||++++.. .....|...|.+++| +|++++|++++.|+.|++||++... .+..+..+ ..+.++.+.+. .
T Consensus 111 ~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~-~~~~~~~~~~~--~ 182 (368)
T 3mmy_A 111 KMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN---PMMVLQLP-ERCYCADVIYP--M 182 (368)
T ss_dssp EEEETTTTEE--EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS---CSEEEECS-SCEEEEEEETT--E
T ss_pred EEEEcCCCCc--eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc---EEEEEecC-CCceEEEecCC--e
Confidence 9999987763 335679999999999 8999999999999999999988754 35666544 45666666653 4
Q ss_pred EEEeecCCCCCeEEEEECCCCeEEEEEe---cCCCeEEEEEcCCccc----eeeeccCCccCCCCeEEEeeCCCC---ce
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTCIHSVD---TKAQICGLEWNRHHKE----ILSGHGFSSSGDGQKLCLWKYPHM---TK 302 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~----l~~~~~~~~~~~~~~i~i~d~~~~---~~ 302 (364)
+++.. .++.+.+|+++......... .......+.+.++... ++++. .++.|++||+... ..
T Consensus 183 ~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 183 AVVAT---AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS------IEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp EEEEE---GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE------TTSEEEEEESSCSCHHHH
T ss_pred eEEEe---CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec------CCCcEEEEecCCCCcccc
Confidence 44433 69999999998865544332 2245666666665554 66664 4999999999887 55
Q ss_pred eeecccccc------------ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 303 WGELQHQTS------------RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 303 ~~~~~~~~~------------~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+..+..|.. .|++++|+|++++|++++.||.|++||+.+++.+..+.+|..+|++++|+|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN 326 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTT
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCC
Confidence 667777765 7999999999999999999999999999999988899999999999999995
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-37 Score=266.94 Aligned_cols=269 Identities=22% Similarity=0.386 Sum_probs=224.3
Q ss_pred eeeecCCCCC--ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 80 LLKVTGEDDF--PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 80 ~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
.+...+|... +.+++|++ ..+++++.||.|++||+.+++....+.. |...|.+++|+| ++++|++|+.||.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDI 160 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEE
Confidence 3444466555 44566664 5577888999999999999998877765 788999999999 9999999999999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
||+.+++. ...+.+|...|.+++|+ ++++++++.||.|++||++.. ...+..+.+|...|.+++|+|++ .++++
T Consensus 161 wd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~s 234 (401)
T 4aez_A 161 YDVESQTK-LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDG-LQLAS 234 (401)
T ss_dssp EETTTCCE-EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred EECcCCeE-EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC--cceeeEEcCCCCCeeEEEEcCCC-CEEEE
Confidence 99987764 66777999999999994 569999999999999998853 24577788899999999999988 56666
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeE
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILE 315 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 315 (364)
++ .|+.|++||+++++.+..+. +...+.+++|+|++..+++..+ ++.|+.|++||+.+++.+..+. +...|.+
T Consensus 235 ~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~---gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~ 308 (401)
T 4aez_A 235 GG--NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG---GTMDKQIHFWNAATGARVNTVD-AGSQVTS 308 (401)
T ss_dssp EE--TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC---CTTTCEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred Ee--CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec---CCCCCEEEEEECCCCCEEEEEe-CCCcEEE
Confidence 65 79999999999999888875 4578999999998876665321 1359999999999999988886 5578999
Q ss_pred EeecCCCCEEEEE--eCCCcEEEEEeeCCCCCc--ceeccCCceeeeeeccC
Q 040533 316 LSQSPDGLTVVSA--AADETLRFWEAFGPSGSG--DFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 316 i~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~--~~~~~~~~v~~~~~sp~ 363 (364)
++|+|++++|+++ +.||.|++||+.+++... .+.+|.+.|.+++|+|.
T Consensus 309 ~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 360 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360 (401)
T ss_dssp EEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred EEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence 9999999999994 489999999999865544 35689999999999985
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=261.50 Aligned_cols=284 Identities=15% Similarity=0.204 Sum_probs=225.5
Q ss_pred eeecccCCCc----c-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGRN----N-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~----~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
.+.+++|+|+ . +++++.|+.|++||+.+........+.+|...|++++|+|++++|++|+.||.|++||+.+++.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 120 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 120 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence 3888999986 3 5666779999999999743333345668999999999999999999999999999999999887
Q ss_pred eeeeecCCCcEEEEEe--ecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 122 IRNLEGHDKRVATASW--NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
.. +..|...|.+++| +| ++.+|++++.||.|++||+++++. ...+..+ ..+.++.+.+ ..+++++.++.+.+
T Consensus 121 ~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~ 194 (368)
T 3mmy_A 121 IQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLP-ERCYCADVIY--PMAVVATAERGLIV 194 (368)
T ss_dssp EE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSC-SEEEECS-SCEEEEEEET--TEEEEEEGGGCEEE
T ss_pred ee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcE-EEEEecC-CCceEEEecC--CeeEEEeCCCcEEE
Confidence 76 4569999999999 77 889999999999999999997764 4555544 4566777664 47888899999999
Q ss_pred EeCCCCCCCcceEEe-cccccceeEEEEccCCCc---EEEeecCCCCCeEEEEECCCC---eEEEEEecCC---------
Q 040533 200 WDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFN---VLASGGGTQDGCIKIWNVQKG---TCIHSVDTKA--------- 263 (364)
Q Consensus 200 wd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~---~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~--------- 263 (364)
||++.... ..... ..+...+.++.+.++... .+++++ .|+.|++||++.. .....+..+.
T Consensus 195 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 195 YQLENQPS--EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp EECSSSCE--EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred EEeccccc--hhhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence 99876432 11221 223345566666554432 255555 8999999999887 4455555443
Q ss_pred ----CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 264 ----QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 264 ----~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
.+.+++|+|++++++++.. |+.|++||+.+++++..+..|...|++++|+|+|++|++++.|+..+.|++
T Consensus 271 ~~~~~v~~~~~sp~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVHGTLATVGS------DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEECCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ccccceEEEEEecCCCEEEEEcc------CCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 6999999999999999855 999999999999999999999999999999999999999999987777776
Q ss_pred eCCCCCc
Q 040533 340 FGPSGSG 346 (364)
Q Consensus 340 ~~~~~~~ 346 (364)
...+...
T Consensus 345 ~~~~~~~ 351 (368)
T 3mmy_A 345 YNPQKKN 351 (368)
T ss_dssp CCTTSCC
T ss_pred cCCCccc
Confidence 5544433
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=266.59 Aligned_cols=281 Identities=11% Similarity=0.128 Sum_probs=227.6
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCc---eeeeee-----------------------------------------
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGE---VQKLLK----------------------------------------- 82 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~---~~~~~~----------------------------------------- 82 (364)
+.+++|+++ .+++++.++.|++||+.+++ ......
T Consensus 7 ~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKR 86 (450)
T ss_dssp CCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------------------
T ss_pred EEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccc
Confidence 566778885 47788889999999999887 322221
Q ss_pred -----------ecCCCCCceEEEEcCCCCEE-EEEecCCcEEEEecC--Ccceeeeee--cCCCcEEEEEeecCCCCEEE
Q 040533 83 -----------VTGEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAE--TSKLIRNLE--GHDKRVATASWNHWNGHILT 146 (364)
Q Consensus 83 -----------~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~ 146 (364)
.++|.+.|.+++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|.+++|+| ++.+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~ 165 (450)
T 2vdu_B 87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVI 165 (450)
T ss_dssp -------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred cCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEE
Confidence 01344479999999999996 889999999999999 888888776 5778999999999 999999
Q ss_pred EeeCCCcEEEEEcccCcc---eeeeeecccCcEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCCCCcceEE-eccccc
Q 040533 147 SGSQDKSIINHDVRVSNN---VTSRINAHTAEVCGLKWSNE---GNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRA 219 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~ 219 (364)
+++.+|.+++|++.+... ....+.+|...|.+++|+|+ +++|++++.|+.|++||++... .+.. +.+|..
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~h~~ 242 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF---IVDKWLFGHKH 242 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT---CEEEECCCCSS
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc---eeeeeecCCCC
Confidence 999999999999987653 22366789999999999999 9999999999999999987653 3555 558999
Q ss_pred ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--------------------------CCCeEEEEEcCC
Q 040533 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--------------------------KAQICGLEWNRH 273 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------------------------~~~v~~~~~~~~ 273 (364)
.|.+++|+ ++ .++++++ .|+.|++||+++++++..+.. ...+..++|+|+
T Consensus 243 ~v~~~~~s-d~-~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 243 FVSSICCG-KD-YLLLSAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CEEEEEEC-ST-TEEEEEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred ceEEEEEC-CC-CEEEEEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999 77 5666665 899999999999998888752 245889999999
Q ss_pred ccceeeeccCCccCCCCeEEEeeC--CCC---ceeeeccccccceeEEeecCCCCEEEEEeC------CCcEEEEEeeCC
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKY--PHM---TKWGELQHQTSRILELSQSPDGLTVVSAAA------DETLRFWEAFGP 342 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~--~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------dg~i~vw~~~~~ 342 (364)
+++++++. ..++.|++|++ .++ +.+..+..| ..|.+++|+|++.++++++. +..|.+|.+...
T Consensus 319 ~~~l~~~~-----~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 319 LPFVAFFV-----EATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSEEEEEE-----TTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCEEEEEE-----CCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 99999875 23999999999 555 666677777 78999999996544444443 556899988754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=267.70 Aligned_cols=257 Identities=19% Similarity=0.372 Sum_probs=224.5
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.+|...|.++++ ++++|++|+.||.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+.+++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCc
Confidence 366778888877 7899999999999999999999999999999999999999 78899999999999999999876
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
. ...+..|...|.+++|++ ..+++++.||.|++||++..........+.+|...|.+++| ++ ..+++++ .||
T Consensus 205 ~-~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~--~dg 276 (435)
T 1p22_A 205 M-LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVSAS--GDR 276 (435)
T ss_dssp E-EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEEEE--TTS
T ss_pred E-EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-CEEEEEe--CCC
Confidence 4 677789999999999974 59999999999999999876654444777889999999999 34 4666665 799
Q ss_pred eEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC
Q 040533 244 CIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
.|++||+++++.+..+..+ ..+.++.++ +.+++++.. |+.|++||+.+++.+..+.+|...|.+++| ++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET------TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeC------CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence 9999999999999888754 678999884 677887754 999999999999999999999999999999 78
Q ss_pred CEEEEEeCCCcEEEEEeeCCC---------CCcceeccCCceeeeeeccC
Q 040533 323 LTVVSAAADETLRFWEAFGPS---------GSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+|++|+.||.|++||+.++. .+..+.+|.+.|.+++|.+.
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 396 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 396 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCC
Confidence 899999999999999998766 45667789999999998653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=266.18 Aligned_cols=267 Identities=16% Similarity=0.246 Sum_probs=217.3
Q ss_pred CCceEEEEcCCCCEEE-EEecCCcEEEEecCCc----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 88 DFPTSISWSQDAKTLA-VGYMASKLQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.....++++|+...++ +++.||.|+||++... .....+.+|...|.+++|+|.++++|++|+.||.|++||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 3445688888775444 5788999999998654 2345677899999999999977899999999999999999876
Q ss_pred c------ceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEe--cccccceeEEEEccCCCcE
Q 040533 163 N------NVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRF--RDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 163 ~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~ 233 (364)
. .....+.+|...|.+++|+|++ ++|++++.|+.|++||+++. +.+..+ ..|...|.+++|+|++..
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~- 190 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRDGAL- 190 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---EEEEEECTTTCCSCEEEEEECTTSSC-
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---CccEEEecCCCCCceEEEEECCCCCE-
Confidence 3 3466788999999999999998 69999999999999998764 457777 789999999999999855
Q ss_pred EEeecCCCCCeEEEEECCCCeEEEEE-ecC-C-CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeecc-c
Q 040533 234 LASGGGTQDGCIKIWNVQKGTCIHSV-DTK-A-QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQ-H 308 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~-~ 308 (364)
+++++ .|+.|++||+++++.+..+ ..+ . .+..+.|+|++.+++++.. .+.++.|++||+.+++. +.... .
T Consensus 191 l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 191 ICTSC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS---RMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp EEEEE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC---TTCCEEEEEEETTBCSSCSEEEECC
T ss_pred EEEEe--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc---CCCCceEEEEcCccccCCceEEecc
Confidence 45554 7999999999999999888 443 3 3899999999999998721 12399999999988765 33322 4
Q ss_pred cccceeEEeecCCCCEEEE-EeCCCcEEEEEeeCCCC-Ccceec--cCCceeeeeeccC
Q 040533 309 QTSRILELSQSPDGLTVVS-AAADETLRFWEAFGPSG-SGDFVS--HLDGLLSLKVSPI 363 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~-~~~dg~i~vw~~~~~~~-~~~~~~--~~~~v~~~~~sp~ 363 (364)
|...+.+++|+|++++|++ |+.||.|++||+.+++. +..+.. |.++|.+++|+|.
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK 324 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence 6678999999999999865 55799999999998875 445554 4589999999996
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=269.05 Aligned_cols=285 Identities=16% Similarity=0.203 Sum_probs=232.4
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCcceeeeee-------------cCC
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRNLE-------------GHD 129 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~ 129 (364)
++.+++|+...++..... .+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVE--RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEEC--CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeee--eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 445677777766654443 48999999999999 99999999999999999999887665543 589
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE---GNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
..|.+++|+|.++.+|++++.||.|++||+.+++. ...+ .+...+.++.|++. +.++++++.|+.|++||++..
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~- 176 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG- 176 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-
Confidence 99999999997778999999999999999987764 3333 47788999999984 459999999999999998765
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEE----------------ecCCCeEEEE
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSV----------------DTKAQICGLE 269 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~----------------~~~~~v~~~~ 269 (364)
+.+..+..|...|.+++|+|++..++++++ .||.|++||++++. .+..+ .+...+.+++
T Consensus 177 --~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 177 --SCSHILQGHRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp --CCCEEECCCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred --ceeeeecCCCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 447788889999999999999988888876 89999999998765 33333 2346799999
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc-----cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-----SRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
|+|++++++++.. |+.|++||+.+++....+..+. ..+........+..+++++.|+.|++||+.+++.
T Consensus 253 ~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 253 FTSDGLHLLTVGT------DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp ECTTSSEEEEEET------TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred EcCCCCEEEEecC------CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence 9999999998854 9999999999988766544321 1222222233455677788899999999999999
Q ss_pred CcceeccCCceeeeeeccC
Q 040533 345 SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 345 ~~~~~~~~~~v~~~~~sp~ 363 (364)
+..+.+|.+.|++++|+|.
T Consensus 327 ~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp EEEECCCSSCEEEEEEETT
T ss_pred eeeeccCCCeEEEEEEcCC
Confidence 9999999999999999985
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=265.32 Aligned_cols=271 Identities=17% Similarity=0.246 Sum_probs=230.1
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEc--CCCCEEEEEecCCcEEEEecCCcce--
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWS--QDAKTLAVGYMASKLQLWDAETSKL-- 121 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~-- 121 (364)
.+.+++|++++ +++++.|+.|++||+.+++... .+.+|...|.+++|+ ++++++++|+.||.|++||+.++..
T Consensus 164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 164 GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp CEEEEEECSTTEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred CEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEE--EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 47788888864 6777889999999999987644 455899999999998 5788999999999999999987653
Q ss_pred ---------------------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE
Q 040533 122 ---------------------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180 (364)
Q Consensus 122 ---------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 180 (364)
...+.+|...+.++. + +++++++++.||.|++||+++++. ...+.+|...|.+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~ 317 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTI 317 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEE
Confidence 445677888888874 5 889999999999999999987664 667788999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
|+|+++++++|+.||.|++||++++ +.+..+.+|...|.+++|++ ..+++++ .||.|++||+.++.......
T Consensus 318 ~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~---~~l~s~s--~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 318 YDHERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECS---SEEEEEE--TTSEEEEEETTTCCEEEEEE
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCC---cEEEEEeCCCCcEEEEEEcC---CEEEEEe--CCCcEEEEECCCCceeeeec
Confidence 9999999999999999999998764 56888899999999999984 5677766 89999999999998888887
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee-ccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
....+..++|++++.+++++. ++.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.+|-+
T Consensus 390 ~~~~~~~~~~~~~~~~l~~~~-------dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 390 HTNLSAITTFYVSDNILVSGS-------ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CTTCCCEEEEEECSSEEEEEE-------TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCCccEEEEEeCCCEEEEec-------CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 778889999999999998875 89999999999999986 67788999999997 3445566667776655543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=270.91 Aligned_cols=257 Identities=8% Similarity=0.068 Sum_probs=202.7
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|++|+ |...++. +.+|...|.+++|+|+| .++.+.+|+.+.. ....
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-----l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~ 81 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-----INCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLLN 81 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECCCSC-----CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSST
T ss_pred cEEEEEECCCCCEEEEEcCCceee--cccccce-----ecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEee
Confidence 37889999976 44456788888 7555432 25899999999999999 4555555554322 2223
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC-----cEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA-----EVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+ .|...|.+++|+| ++.+||+++.||.|++||... ....+. |.. .+.+++|||+|++|++|+.||+|++
T Consensus 82 ~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 82 S-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp T-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred c-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 3 4578899999999 999999999999999999543 455555 655 4999999999999999999999999
Q ss_pred EeCCCCCCCc----ceEEe----cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEEe--cCCCeE
Q 040533 200 WDHSKMSSSK----CLHRF----RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSVD--TKAQIC 266 (364)
Q Consensus 200 wd~~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~--~~~~v~ 266 (364)
||+....... .+..+ .+|...|.+++|+|++ +++ ++ .|+.|++||+.+++. .+++. +...|.
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa-ss--~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA-AL--SNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE-EE--TTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE-Ee--CCCeEEEEECCCCccccceeeecccccCcEE
Confidence 9988753211 24555 5677899999999998 444 43 699999999988773 35553 346799
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEee--cCCCCEEEEEeCCCcEEEEEe
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ--SPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+++|+ |..++++. ++.|++||+.+++......+|.+.|..++| +|++..|++++.||+ ++|..
T Consensus 231 svaFs--g~~LASa~-------~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 231 DLKIV--DYKVVLTC-------PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp CEEEE--TTEEEEEC-------SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEEE--CCEEEEEe-------CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 99999 57777763 799999999988774444479999999999 999999999999999 99986
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=265.24 Aligned_cols=262 Identities=11% Similarity=0.072 Sum_probs=216.5
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---eeeeeec-------------------------------------
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---LIRNLEG------------------------------------- 127 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~------------------------------------- 127 (364)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999976666 57899999999998 5555442
Q ss_pred -----------------CCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcc--cCcceeeeee--cccCcEEEEEEcCCC
Q 040533 128 -----------------HDKRVATASWNHWNGHIL-TSGSQDKSIINHDVR--VSNNVTSRIN--AHTAEVCGLKWSNEG 185 (364)
Q Consensus 128 -----------------~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~--~~~~~~~~~~--~~~~~v~~~~~~~~~ 185 (364)
|...|.+++|+| ++++| ++++.||.|++||+. ++.. ...+. .|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCC
Confidence 233699999999 88885 899999999999998 5554 44444 567899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCc-ceEEecccccceeEEEEccC---CCcEEEeecCCCCCeEEEEECCCCeEEEEEe-
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSK-CLHRFRDHRAAVKALAWCPY---QFNVLASGGGTQDGCIKIWNVQKGTCIHSVD- 260 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~- 260 (364)
++|++++.+|.+++|++....... ....+.+|...|.+++|+|+ + .++++++ .|+.|++||+++++.+..+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~--~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSD--RDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEE--TTSCEEEEEESCTTCEEEECC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEc--CCCcEEEEECCCCceeeeeec
Confidence 999999999999999988765433 44467789999999999998 6 5666765 89999999999998887743
Q ss_pred -cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-------------------------cccee
Q 040533 261 -TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-------------------------TSRIL 314 (364)
Q Consensus 261 -~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------------------~~~i~ 314 (364)
+...|.+++|+ ++++++++.. |+.|++||+.+++.+..+..+ ...|.
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGG------DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEES------SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred CCCCceEEEEEC-CCCEEEEEeC------CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 55789999999 9999998854 999999999999988777532 34689
Q ss_pred EEeecCCCCEEEEEe-CCCcEEEEEe--eCC---CCCcceeccCCceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAA-ADETLRFWEA--FGP---SGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~-~dg~i~vw~~--~~~---~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|+|++++|++++ .|+.|++|++ ..+ +.+..+..| +.|.+++|+|.
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 999999999999998 8999999999 554 344556666 88999999984
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=286.08 Aligned_cols=251 Identities=19% Similarity=0.329 Sum_probs=213.2
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--CcceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEE
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE--TSKLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINH 157 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~ 157 (364)
.+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++....+.+|..+|.+++|+| + +++|++|+.||.|++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEE
Confidence 345999999999999999999999999999999998 5677788899999999999998 6 8999999999999999
Q ss_pred EcccCc-ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccC-----
Q 040533 158 DVRVSN-NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY----- 229 (364)
Q Consensus 158 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 229 (364)
|+.++. .....+..|...|.+++|+|+ ++++++|+.||.|++||++.... .....+.+|...|.+++|+|.
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-CCCEEEECCSSCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-cceeEeecCCCceEEEEecCcccccc
Confidence 998765 235667789999999999999 99999999999999999987643 334566789999999999994
Q ss_pred --------CCcEEEeecCCCCCeEEEEECCCC----eEEEEEe-cCCCeEEEEEcCC---ccceeeeccCCccCCCCeEE
Q 040533 230 --------QFNVLASGGGTQDGCIKIWNVQKG----TCIHSVD-TKAQICGLEWNRH---HKEILSGHGFSSSGDGQKLC 293 (364)
Q Consensus 230 --------~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~-~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~~~i~ 293 (364)
+ .++++++ .||.|++||++++ .....+. +...|.+++|+|+ +.+++++.. |+.|+
T Consensus 162 ~~~~~~~d~-~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~------Dg~I~ 232 (753)
T 3jro_A 162 GEHNGTKES-RKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCI 232 (753)
T ss_dssp -----CGGG-CCEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES------SSCEE
T ss_pred cccccCCCC-CEEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec------CCEEE
Confidence 5 5566665 7999999999877 4445554 3578999999999 899998855 99999
Q ss_pred EeeCCCCc-----eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 294 LWKYPHMT-----KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 294 i~d~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
+||+.+++ .......|...|++++|+|+|++|++|+.||.|++|++..+.
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99998864 334445688899999999999999999999999999998644
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=254.81 Aligned_cols=280 Identities=12% Similarity=0.121 Sum_probs=228.2
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE-EEEecCCcEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
+++++.++.|++||+.+++...... .| ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~--~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIP--VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE--CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEee--cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 4556678999999999988755443 44 458999999999977 566689999999999999988887554 899999
Q ss_pred eecCCCCEEE-EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCCcceEEe
Q 040533 137 WNHWNGHILT-SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL-ASGGDDNLVHVWDHSKMSSSKCLHRF 214 (364)
Q Consensus 137 ~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~ 214 (364)
|+| ++++|+ +++.++.|++||+.+++. ...+. +...+.+++|+|+++.+ ++++.++.|++||+++. +.+..+
T Consensus 81 ~sp-dg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~ 154 (391)
T 1l0q_A 81 VSP-DGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTV 154 (391)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE
T ss_pred ECC-CCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEE
Confidence 999 887665 555779999999987764 44444 44568999999999977 67888999999998764 335555
Q ss_pred cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 215 RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 215 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
..+ ..+.+++|+|+++.++++++ .++.|++||+++++....+.....+.+++|+|++++++++.. ...++.|++
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~v~~ 228 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV---DKYFNTVSM 228 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE---CSSCCEEEE
T ss_pred ecC-CCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec---CcCCCcEEE
Confidence 544 45689999999988877765 789999999999999999888888999999999999888751 013899999
Q ss_pred eeCCCCceeeeccccccceeEEeecCCCCEE-EEEeCCCcEEEEEeeCCCCCcceeccCCc
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPDGLTV-VSAAADETLRFWEAFGPSGSGDFVSHLDG 354 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 354 (364)
||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 229 ~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred EECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 9999999888887765 47899999999987 67788999999999988877776655443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=257.51 Aligned_cols=260 Identities=21% Similarity=0.433 Sum_probs=219.6
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
.++.|+||++ +.||+|. |++|+|||..+++....+. +|...|++++|+| ++++|++|+.||.|++||+++++. +
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~-~ 182 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKR-L 182 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-E
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcE-E
Confidence 3578999975 5788875 8999999999998877665 5778899999999 999999999999999999997764 6
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
..+.+|...+.+++++ +.+|++|+.|+.+++||.+... ..+..+.+|...+..+.|+|++. .+++++ .|+.++
T Consensus 183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~--~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~--~D~~v~ 255 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNLVN 255 (420)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSCEE
T ss_pred EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc--eeeEEecccccceeeeeecCCCC-eeeeee--ccccce
Confidence 7788999999998875 5699999999999999987643 45677889999999999999995 556655 799999
Q ss_pred EEECCCCeE----EEEE-ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCC
Q 040533 247 IWNVQKGTC----IHSV-DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 247 i~d~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
+|+..+++. +... .+...|.+++|+|.+..+++.. .++.|+.|++||+.+++++..+..| ..+.++.|+|+
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~---~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~ 331 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG---GGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPH 331 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE---ECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETT
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE---eecCCCEEEEEeCCccccceeeccc-cceeeeeecCC
Confidence 999987653 2333 3557899999999877665421 2356999999999999999888765 46889999999
Q ss_pred CCEEEEEe--CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 322 GLTVVSAA--ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 322 ~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.+++++ .||.|+|||+.+++.+..+.+|.+.|++|+|||.
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd 375 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 375 (420)
T ss_dssp TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 99988765 7999999999999999999999999999999995
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=256.83 Aligned_cols=284 Identities=12% Similarity=0.077 Sum_probs=234.0
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCceeeee---eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLL---KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
..+++|+|++ +++++ .++.|++||..+++..... .+.+|...|.+++|+|+++++++++.|+.|++||+++++.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 4467888854 44433 4678999999998876533 23488999999999999999999999999999999999999
Q ss_pred eeeecCCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe--------C
Q 040533 123 RNLEGHDKRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG--------D 193 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~ 193 (364)
..+..|...+.+++|+| +++.+ ++++.++.|++||+++++. ...+.. ...+.+++|+|+++.+++++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 99988999999999999 77766 4555899999999987654 444433 45699999999999999888 5
Q ss_pred CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCC
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~ 273 (364)
|+.|++||+++.. .+..+ .+...+.+++|+|+++.++++++ .++.|++||+.+++.+..+.....+.+++|+|+
T Consensus 282 dg~i~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~d 355 (433)
T 3bws_A 282 GGRLGIYSMDKEK---LIDTI-GPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPD 355 (433)
T ss_dssp CEEEEEEETTTTE---EEEEE-EEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred CCeEEEEECCCCc---EEeec-cCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCC
Confidence 8899999987643 23333 45668899999999988888866 899999999999999999988888999999999
Q ss_pred ccceeeeccC---------CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC-CCcEEEEEeeC
Q 040533 274 HKEILSGHGF---------SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA-DETLRFWEAFG 341 (364)
Q Consensus 274 ~~~l~~~~~~---------~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~ 341 (364)
+++++++... .+++.||.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++. |+.|++|++..
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9988877531 23344789999999999988888764 57899999999999988875 99999999863
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=255.58 Aligned_cols=264 Identities=16% Similarity=0.142 Sum_probs=202.2
Q ss_pred CCCceEEEEcCCCCEEEEEecCC-------cEEEEecCCccee----------eeeecCCCcEEEEEeecCCCCEEEEe-
Q 040533 87 DDFPTSISWSQDAKTLAVGYMAS-------KLQLWDAETSKLI----------RNLEGHDKRVATASWNHWNGHILTSG- 148 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg-------~i~iw~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~- 148 (364)
..+|++++|+||+++|++|+.+. .|++|++..+... ..+..|...|.++++ +++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~---~~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA---SKGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE---ETTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe---CCCEEEEEE
Confidence 45899999999999999997543 5999998755321 235567788888877 55566665
Q ss_pred ----------eCCCcEEEEEcccCcceeeee--------ecccCcEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCCCC
Q 040533 149 ----------SQDKSIINHDVRVSNNVTSRI--------NAHTAEVCGLKWSNEGNLLASG--GDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 149 ----------~~dg~i~~~d~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~ 208 (364)
+.|+.+++|++.......... ..+...+.+++|+|||++++++ +.|++|++||+++.
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--- 167 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--- 167 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT---
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---
Confidence 457789999987665322221 2344568999999999987654 47899999998764
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe---cCCCeEEEEEcCCccceeeeccCCc
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---TKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
+.+..+. |...|.+++|+|++. ++++++ ++.+.+|+..+++.+.... +...+.+++|+|+++.++++..-
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~-~l~s~s---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d-- 240 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGK-VVAYIT---GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK-- 240 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSS-EEEEEC---SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES--
T ss_pred cEEEEeC-CCCceEEEEEccCCc-eEEecc---ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC--
Confidence 3455554 778899999999994 566654 6678888888887765442 33569999999999999987540
Q ss_pred cCCCCeEEEeeCCCCce----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-eccCCceeeeee
Q 040533 286 SGDGQKLCLWKYPHMTK----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF-VSHLDGLLSLKV 360 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~ 360 (364)
++....+++|++..... ...+.+|...|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|.++|++|+|
T Consensus 241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 01122688898876543 3456788999999999999999999999999999999999888775 689999999999
Q ss_pred ccC
Q 040533 361 SPI 363 (364)
Q Consensus 361 sp~ 363 (364)
||.
T Consensus 321 Spd 323 (365)
T 4h5i_A 321 SPD 323 (365)
T ss_dssp CTT
T ss_pred CCC
Confidence 995
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=253.61 Aligned_cols=246 Identities=20% Similarity=0.323 Sum_probs=205.8
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcc--e
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSK--L 121 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~--~ 121 (364)
+.+++|++++ +++++.|+.|++||+..+.......+.+|...|++++|+|+ +++|++|+.||.|++||+.+++ .
T Consensus 14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 93 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 93 (379)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeE
Confidence 7888888854 56666799999999986655556677799999999999987 8999999999999999999887 6
Q ss_pred eeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcC-------------CC
Q 040533 122 IRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSN-------------EG 185 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~-------------~~ 185 (364)
...+..|...|.+++|+| + +.+|++++.||.|++||++.... ....+..|...|.+++|+| ++
T Consensus 94 ~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 94 IAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp EEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred eeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 777888999999999999 7 89999999999999999987642 3445678999999999999 68
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCC-cceEEecccccceeEEEEccCC--CcEEEeecCCCCCeEEEEECCCCe---EEEEE
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCPYQ--FNVLASGGGTQDGCIKIWNVQKGT---CIHSV 259 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~ 259 (364)
.++++++.|+.|++||++..... .....+.+|...|.+++|+|++ ..++++++ .||.|++||++++. .....
T Consensus 173 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~ 250 (379)
T 3jrp_A 173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKTLL 250 (379)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEEES
T ss_pred CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCCCccceeeee
Confidence 99999999999999998765432 3456778899999999999994 36777766 89999999998864 22222
Q ss_pred e---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 260 D---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 260 ~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
. +...+.+++|+|++++++++.. |+.|++|++.....
T Consensus 251 ~~~~~~~~v~~~~~s~~g~~l~~~~~------dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 251 KEEKFPDVLWRASWSLSGNVLALSGG------DNKVTLWKENLEGK 290 (379)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEES------SSSEEEEEEEETTE
T ss_pred ccccCCCcEEEEEEcCCCCEEEEecC------CCcEEEEeCCCCCc
Confidence 2 4567999999999999998854 99999999875443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=239.62 Aligned_cols=259 Identities=21% Similarity=0.413 Sum_probs=215.2
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
..+|+||+++ +||+| .|++|+|||+++++.+..+. +|...|.+++|+| ++++|++|+.||+|++||+++++. ..
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~-~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKR-LR 103 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-EE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCcee-EE
Confidence 4689999876 77776 59999999999999887765 5778899999999 999999999999999999997764 67
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
.+.+|...+.++.+ ++..+++++.++.+++|+..... ..+..+.+|...+..+.+.+++. ++++++ .|+.|++
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~--~d~~i~i 176 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNLVNV 176 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSCEEE
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc--eeEEEEcCccCceEEEEEcCCCC-EEEEEe--cCcceeE
Confidence 78899998887665 46699999999999999977543 45677788999999999999985 555655 7999999
Q ss_pred EECCCCeEE-----EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC
Q 040533 248 WNVQKGTCI-----HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 248 ~d~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
||+++++.. ........+..+.++|.+..++... +++.++.|++||........... +...+..+.|+|++
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG---GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHY 252 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE---ECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTT
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE---ecCCCCEEEEEeccccccccccc-ceeeeeeeeecccc
Confidence 999876532 2223457799999999887765321 23568999999998887766554 56679999999999
Q ss_pred CEEEEEe--CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 323 LTVVSAA--ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 323 ~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..+++++ .||.|++||+.+++.+..+.+|.+.|++++|||.
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 9887764 7999999999999999999999999999999995
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=244.63 Aligned_cols=250 Identities=14% Similarity=0.258 Sum_probs=205.3
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCce--eeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCc-
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEV--QKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETS- 119 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~- 119 (364)
.+.+++|+|++ +++++.|+.|++||+.++.. .....+.+|...|++++|+| ++++|++|+.||.|++||+.++
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence 37888888854 66777899999999986642 33455668999999999999 6999999999999999999887
Q ss_pred --------ceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcceeee------------eecccCcEE
Q 040533 120 --------KLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNNVTSR------------INAHTAEVC 177 (364)
Q Consensus 120 --------~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~------------~~~~~~~v~ 177 (364)
+.+..+..|...|.+++|+| + +.+|++++.||.|++||+++....... ...|...+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 93 EECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF 171 (351)
T ss_dssp CTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCE
T ss_pred ccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccccee
Confidence 55777888999999999999 7 999999999999999999876532111 125778899
Q ss_pred EEEEcCC---CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC---cEEEeecCCCCCeEEEEECC
Q 040533 178 GLKWSNE---GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF---NVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 178 ~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~g~~d~~i~i~d~~ 251 (364)
+++|+|+ +.++++++.++.+.+|+.... ....+..+.+|...|.+++|+|++. .++++++ .||.|++||++
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iwd~~ 248 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIFKIT 248 (351)
T ss_dssp EEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEEEEE
T ss_pred EEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEEEeCC
Confidence 9999997 899999999999987776543 2244677888999999999999974 5777776 89999999998
Q ss_pred CC----------------------------------------------eEEEEEec-CCCeEEEEEcCCccceeeeccCC
Q 040533 252 KG----------------------------------------------TCIHSVDT-KAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 252 ~~----------------------------------------------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
++ +.+..+.. ...|.+++|+|++++|+++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 326 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD-- 326 (351)
T ss_dssp ECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET--
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC--
Confidence 75 44455543 477999999999999998854
Q ss_pred ccCCCCeEEEeeCCCCceeeec
Q 040533 285 SSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
|+.|++|++.+++.+..+
T Consensus 327 ----dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 327 ----DGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----TSCEEEEEECTTSCEEEE
T ss_pred ----CCcEEEEecCcCcchhhe
Confidence 999999999987665544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=248.83 Aligned_cols=261 Identities=12% Similarity=0.090 Sum_probs=203.0
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC---------Ccceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE---------TSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~---------~~~~~~~~~ 126 (364)
..+++++.|+.|++||+.+++...... ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+.
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 347888899999999999988755554 456788889988 9999999999999765 444444444
Q ss_pred -cCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 127 -GHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 127 -~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.|...|.+++|+|. +++++++++.||.|++||+++++........+...+.+++|+|++.+|++|+.||.|++||+++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 57788999999982 5789999999999999999987753333345566899999999999999999999999999987
Q ss_pred CCCCcce-EEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec----CCCe--EEEEEcCCccc
Q 040533 205 MSSSKCL-HRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----KAQI--CGLEWNRHHKE 276 (364)
Q Consensus 205 ~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~v--~~~~~~~~~~~ 276 (364)
... + ..+.. |..+|.+++|+|++. ++++++ |+.|++||+++++.+..+.. ...+ .+++|+|++++
T Consensus 202 ~~~---~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 202 PDQ---ASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp TTS---CCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred CCC---CccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 643 4 56677 999999999999984 556654 45999999998876544331 1223 46999999999
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC---CCCEEEEEeCCCcEEEEEe
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP---DGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~vw~~ 339 (364)
++++. +.++.+++|++.+....... .++..++|.+ +++.+++++.||.+.++-.
T Consensus 275 l~~~s-----~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 275 MIAYS-----NESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp EEEEE-----TTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred EEEec-----CCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 99863 22889999999766544333 5678899999 8899999999999998754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=249.44 Aligned_cols=275 Identities=12% Similarity=0.091 Sum_probs=192.4
Q ss_pred ccEEEEEeCCeEEEEECCCCce-------eeeeeecCCCCCceEEEEc--------------------CCCCEEEEEecC
Q 040533 56 NNILAIALGLELYLWKQENGEV-------QKLLKVTGEDDFPTSISWS--------------------QDAKTLAVGYMA 108 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~-------~~~~~~~~~~~~v~~~~~s--------------------~~~~~l~~~~~d 108 (364)
.++++++.++.|.+|+...... ........+...+..+.|+ +++.+||+|+.|
T Consensus 31 ~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d 110 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQD 110 (393)
T ss_dssp TTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETT
T ss_pred CCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCC
Confidence 3589999999999998642211 0111111334444444444 345689999999
Q ss_pred CcEEEEecCCccee-----eeeecCCCcEEEEEeec-------CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE
Q 040533 109 SKLQLWDAETSKLI-----RNLEGHDKRVATASWNH-------WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV 176 (364)
Q Consensus 109 g~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v 176 (364)
++|+|||.++++.. ..+.+|.+.|.+++|+| .++++|++|+.|++|++||++++.. ...+..|..++
T Consensus 111 ~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-~~~~~~~~~~v 189 (393)
T 4gq1_A 111 NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-ILAGYPLSSPG 189 (393)
T ss_dssp SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE-EEEEEECSSCE
T ss_pred CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce-eeeecCCCCCc
Confidence 99999999887543 34678999999999987 2678999999999999999987765 45566788999
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcce----------------------EEecccccceeEEEEc-cCCCc
Q 040533 177 CGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCL----------------------HRFRDHRAAVKALAWC-PYQFN 232 (364)
Q Consensus 177 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------~~~~~~~~~v~~~~~~-~~~~~ 232 (364)
.+++|+|++ .+|++++.|+.|++||++........ ....+|...+.++.|. |++ .
T Consensus 190 ~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~ 268 (393)
T 4gq1_A 190 ISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-S 268 (393)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT-C
T ss_pred EEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC-C
Confidence 999999987 48999999999999999865331110 1123567788999987 566 5
Q ss_pred EEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeE------------------EEEEcC-Cc-cceeeeccCCccCCCCe
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQIC------------------GLEWNR-HH-KEILSGHGFSSSGDGQK 291 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~------------------~~~~~~-~~-~~l~~~~~~~~~~~~~~ 291 (364)
.+++++ .|+++++||+..++....+..+ ..+. ...++| .+ .++++| +.|+.
T Consensus 269 ~l~s~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg------s~Dg~ 340 (393)
T 4gq1_A 269 GILAMC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH------SQHGL 340 (393)
T ss_dssp EEEEEC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE------TTTTE
T ss_pred EEEEEe--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE------CCCCE
Confidence 566655 8999999999887655444221 1122 223333 22 233444 55999
Q ss_pred EEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 292 LCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
|++||..+++....+..|..+|.+++|+|||++||+++.|| +.+|++..
T Consensus 341 V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 341 IQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred EEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 99999999999988888999999999999999999998765 66666543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=272.26 Aligned_cols=244 Identities=20% Similarity=0.325 Sum_probs=205.7
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcc--
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSK-- 120 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~-- 120 (364)
.+.+++|+|++ +++++.||.|++||+.++.......+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+++
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~ 90 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 90 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc
Confidence 37888888853 77777899999999986665566677799999999999988 9999999999999999999886
Q ss_pred eeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcC-------------C
Q 040533 121 LIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSN-------------E 184 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~-------------~ 184 (364)
....+..|...|.+++|+| + ++++++|+.||.|++||++.... ....+..|...|.+++|+| +
T Consensus 91 ~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 91 QIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp EEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred ccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 6777888999999999999 7 99999999999999999987632 3445678999999999999 5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC-cceEEecccccceeEEEEccCC--CcEEEeecCCCCCeEEEEECCCCeEE-----
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCPYQ--FNVLASGGGTQDGCIKIWNVQKGTCI----- 256 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~~~----- 256 (364)
+.++++|+.||.|++||++..... .....+.+|...|.+++|+|++ ..++++++ .||.|++||+.++...
T Consensus 170 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~ 247 (753)
T 3jro_A 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKTL 247 (753)
T ss_dssp GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSSSSCCBCCB
T ss_pred CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCCCCcceeEE
Confidence 899999999999999998865332 4566778899999999999993 36777776 8999999999886421
Q ss_pred -EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 257 -HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 257 -~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
....+...+.+++|+|++++++++.. ||.|++|++..
T Consensus 248 ~~~~~~~~~v~~l~~spdg~~l~s~s~------Dg~I~vwd~~~ 285 (753)
T 3jro_A 248 LKEEKFPDVLWRASWSLSGNVLALSGG------DNKVTLWKENL 285 (753)
T ss_dssp SSSSCCSSCCCCEEECTTTCCEEEECS------SSCEECCBCCS
T ss_pred eccCCCCCceEEEEEcCCCCEEEEEcC------CCEEEEEecCC
Confidence 11124567999999999999998854 99999999874
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=250.03 Aligned_cols=300 Identities=12% Similarity=0.071 Sum_probs=234.1
Q ss_pred eecccCCCcc--EE-EEE----eCC----eEEEEEC--CCCceeeeeeecCCCCCceEEEEcC--------------CCC
Q 040533 48 SNMMDWGRNN--IL-AIA----LGL----ELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQ--------------DAK 100 (364)
Q Consensus 48 ~~~~~~~~~~--~~-~~~----~~~----~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~--------------~~~ 100 (364)
+...+|++.+ ++ +++ .+| .+++||+ .+++......+.+|...+..+++++ .+.
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~ 144 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT 144 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 5667777643 34 444 357 8999999 8888655556678888888887765 266
Q ss_pred EEEEEecC------CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC---cEEEEEcccCcceeeeeec
Q 040533 101 TLAVGYMA------SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK---SIINHDVRVSNNVTSRINA 171 (364)
Q Consensus 101 ~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~ 171 (364)
.++.++.+ +.|++||++ +.....+..|...+.+++|+| +++.|++++.++ .|++||+.+++. ..+..
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~ 220 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV--RQVAS 220 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE--EEEEC
T ss_pred EEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcE--EEeec
Confidence 77776654 799999997 455677778999999999999 999999999875 999999987764 34667
Q ss_pred ccCcEEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEE
Q 040533 172 HTAEVCGLKWSNEGNLLA-SGGDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIK 246 (364)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~ 246 (364)
|...+.+++|+|+|+.|+ +++.++ .|++||+.+.. ...+..|...+.+++|+|+++.+++++. .++ .|.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~spdg~~l~~~s~--~~g~~~i~ 294 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGRPQVY 294 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEECCCCSSCEEEEEECTTSSEEEEEEC--TTSSCEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC----EEeCcCCCCcccceEECCCCCEEEEEEC--CCCCcEEE
Confidence 888999999999999887 666555 49999987643 4566778888999999999977776653 344 788
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
+||+.+++..........+..++|+|+|++|+.+... ..+..|++||+.+++.. .+..+. .+.+++|+|+|++|+
T Consensus 295 ~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~---~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 295 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN---GGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC---SSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred EEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECc---CCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 8899888754433345678899999999999877531 11368999999988764 455554 789999999999999
Q ss_pred EEeCCC---cEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 327 SAAADE---TLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 327 ~~~~dg---~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++.++ .|++||+. +.....+..|.+.|.+++|||.
T Consensus 370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence 998877 79999986 4556778889999999999996
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=237.79 Aligned_cols=277 Identities=10% Similarity=0.102 Sum_probs=212.4
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.+..+++|+..+++...... ...+..+++.++++.++ +|+.|+.|++||..+++.+..
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQE----MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEE----CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeee----cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 37889999864 7777778889999998776543332 22488899999888874 567789999999999999988
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEE--EeCCCeEEEEeC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLAS--GGDDNLVHVWDH 202 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~iwd~ 202 (364)
+. +...|.+++|++ + .++++ .++.|++||+.+.......+.. +...+++++ .++++ |+.||.|++||+
T Consensus 97 ~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 97 IK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp EE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred EE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence 87 677999999976 3 34444 4789999999877223444433 444566666 56666 589999999999
Q ss_pred CCCCC------------Ccc-eEEecccccceeEEEEccCCCcEEEeecCCCCCe-EEEEECCCCeEEEEEe---cCCCe
Q 040533 203 SKMSS------------SKC-LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC-IKIWNVQKGTCIHSVD---TKAQI 265 (364)
Q Consensus 203 ~~~~~------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~---~~~~v 265 (364)
+.... ..+ +..+.+|...|.+++|+|++ .++++++ .|++ |++||+++++++..+. +...|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADV 243 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence 86431 012 67788999999999999998 5677766 8998 9999999999999997 56889
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee--eecc---------------------ccccceeEEeecCCC
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW--GELQ---------------------HQTSRILELSQSPDG 322 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~---------------------~~~~~i~~i~~~~~~ 322 (364)
.+++|+|++++++++.. |+.|++||+...... ..+. .+......++|+++|
T Consensus 244 ~~~~~s~~~~~l~s~s~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~ 317 (355)
T 3vu4_A 244 VDMKWSTDGSKLAVVSD------KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES 317 (355)
T ss_dssp EEEEECTTSCEEEEEET------TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred EEEEECCCCCEEEEEEC------CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence 99999999999999854 999999999765321 1111 111234678999999
Q ss_pred CEEEEEeCCCcEEEEEeeCCCCCc
Q 040533 323 LTVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
++|++++.||.+++|++..++...
T Consensus 318 ~~l~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 318 SLVVVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp EEEEEETTTTEEEEEEEEEETTTT
T ss_pred CEEEEEeCCCeEEEEEEEcCCCCc
Confidence 999999999999999998766543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=248.23 Aligned_cols=232 Identities=9% Similarity=0.012 Sum_probs=186.6
Q ss_pred EcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc---------cCcce
Q 040533 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR---------VSNNV 165 (364)
Q Consensus 95 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---------~~~~~ 165 (364)
+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+| + +++++.|++|++|+.. +...+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 34578899999999999999999999888776 46688889988 5 9999999999999765 23222
Q ss_pred eeeeecccCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCC
Q 040533 166 TSRINAHTAEVCGLKWSN--EGNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
......|...|.+++|+| +++++++++.||.|++||++.... +... ..+...+.+++|+|++ .++++|+ .|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg-~~lasg~--~d 191 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDS-LLLALYS--PD 191 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTS-CEEEEEC--TT
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCC-CEEEEEc--CC
Confidence 233336778999999999 999999999999999999886543 4433 3355679999999998 5777765 89
Q ss_pred CeEEEEECCCCeEE-EEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc---ccccee--
Q 040533 243 GCIKIWNVQKGTCI-HSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---QTSRIL-- 314 (364)
Q Consensus 243 ~~i~i~d~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~-- 314 (364)
|.|++||+++++.+ ..+.. ..+|.+++|+|++.+++++. ++.|++||+++++.+..+.. |...+.
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-------DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-------SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-------CCeEEEEEcCCCCcceeecccccccccccce
Confidence 99999999999877 66654 68899999999999999885 55999999999887766554 444444
Q ss_pred EEeecCCCCEEEEEeC-CCcEEEEEeeCCCCC
Q 040533 315 ELSQSPDGLTVVSAAA-DETLRFWEAFGPSGS 345 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~ 345 (364)
+++|+|+|++|++++. |+.|++|++......
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence 5999999999999998 999999999766543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=254.49 Aligned_cols=243 Identities=11% Similarity=0.148 Sum_probs=192.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
.-...|.+++|+|||+++|+++.|++|+ |.+.+ +.+.+|...|.+++|+| ++ .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsP-dg-------~~~~~~~~~~~~~~- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFP-LE-------FENKLDFELAQQNG- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEEC-CC-------CCCTTTTSCCCSSC-
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECC-CC-------CcceEEEEeCCCce-
Confidence 3467899999999999999999999999 65444 45578999999999999 77 46666666543222
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc-----ceeEEEEccCCCcEEEeecC
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA-----AVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~g 239 (364)
...+ .|...|.+++|+|+|.+||+++.||.|++||... .+..+. |.. .+.+++|+|+|+ ++++|+
T Consensus 79 -~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs- 148 (588)
T 2j04_A 79 -LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGN- 148 (588)
T ss_dssp -SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEE-
T ss_pred -Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCC-EEEEEc-
Confidence 1122 4578999999999999999999999999999432 455555 554 499999999995 556655
Q ss_pred CCCCeEEEEECCCCe-------EEEEEecC-----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce---ee
Q 040533 240 TQDGCIKIWNVQKGT-------CIHSVDTK-----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---WG 304 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~-------~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---~~ 304 (364)
.||+|++||+.++. .+.++..+ ..|.+++|+|+| ++++.. |+.|++||+.+++. ..
T Consensus 149 -~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~------D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 149 -EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS------NNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp -TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET------TCCEEEECCCSSSSCCCEE
T ss_pred -CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC------CCeEEEEECCCCcccccee
Confidence 89999999999875 35666432 479999999999 555533 99999999988774 34
Q ss_pred ec-cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeee--ccC
Q 040533 305 EL-QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV--SPI 363 (364)
Q Consensus 305 ~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~--sp~ 363 (364)
++ .+|...|.+++|+ |+.||+++ ++.|++||+.+++......+|.+.|.+++| +|.
T Consensus 220 tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 220 MIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS
T ss_pred eecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC
Confidence 56 4788899999999 68999987 699999999887664433389999999999 885
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=249.30 Aligned_cols=243 Identities=23% Similarity=0.432 Sum_probs=202.0
Q ss_pred eeecccCCCc--c-EEEEEeCCeEEEEECCC--------CceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEE
Q 040533 47 YSNMMDWGRN--N-ILAIALGLELYLWKQEN--------GEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLW 114 (364)
Q Consensus 47 ~~~~~~~~~~--~-~~~~~~~~~i~iw~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw 114 (364)
.+++++|+|+ . +++++.+|.|++|++.+ +.......+.+|...|++++|+|++. +|++|+.||.|++|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 209 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEE
Confidence 3777888885 3 44556789999999976 23445566779999999999999988 99999999999999
Q ss_pred ecCCcce-------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCC
Q 040533 115 DAETSKL-------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 115 ~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
++.++.. ...+..|...|.+++|+|.++.+|++++.||.|++||+++.. .....+..|...|++++|+|++
T Consensus 210 d~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 289 (430)
T 2xyi_A 210 DINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289 (430)
T ss_dssp ETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC
T ss_pred eCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC
Confidence 9987422 455668999999999999778899999999999999999763 3456677899999999999988
Q ss_pred C-EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC------------
Q 040533 186 N-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK------------ 252 (364)
Q Consensus 186 ~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~------------ 252 (364)
. ++++|+.||.|++||++... .++..+..|...|.+++|+|+++.++++++ .|+.|++||+..
T Consensus 290 ~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 290 EFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred CCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccCcccccc
Confidence 7 78999999999999998743 457788889999999999999988888887 899999999987
Q ss_pred --CeEEEEEec-CCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCC
Q 040533 253 --GTCIHSVDT-KAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 253 --~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.+.+..+.. ...|.+++|+|+++ +++++. .|+.|++|++..
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s------~dg~i~iw~~~~ 410 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVS------EDNIMQVWQMAE 410 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE------TTSEEEEEEECH
T ss_pred CCcceEEEcCCCCCCceEEEECCCCCCEEEEEE------CCCCEEEeEccc
Confidence 245555544 46799999999999 566654 499999999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=238.18 Aligned_cols=250 Identities=15% Similarity=0.116 Sum_probs=182.6
Q ss_pred EEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE-EE
Q 040533 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL-TS 147 (364)
Q Consensus 69 iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~ 147 (364)
+|++.+.+. +.....|...|++++|+|||++|++|+.+| ++||++++++....... ..+..+++.+ +++.+ ++
T Consensus 3 i~s~~~~~~--~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNP--IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLH-RTNYVAFV 76 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECT-TSSEEEEE
T ss_pred cccccccCC--ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcC-CCCEEEEE
Confidence 344444443 234458999999999999999999998665 78999988876655442 2477788888 66655 67
Q ss_pred eeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEc
Q 040533 148 GSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227 (364)
Q Consensus 148 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 227 (364)
++.|+.|++||+.+++. ...+. +...|.+++|+++. ++++. |+.|++||+.... +.+..+.. +...++++
T Consensus 77 ~~~d~~v~iWd~~~~~~-~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~--~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQD-VSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPW--KRITDDIR---FGGVCEFS 146 (355)
T ss_dssp CSSTTEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTC--CBSSCCEE---EEEEEEEE
T ss_pred ECCccEEEEEECCCCcE-EEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCc--eeeEEecc---CCceEEEE
Confidence 88889999999987764 44443 67799999999864 44443 7899999988751 22333332 34455666
Q ss_pred cCCCcEEEeecCCCCCeEEEEECCCCe---------------E-EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCC
Q 040533 228 PYQFNVLASGGGTQDGCIKIWNVQKGT---------------C-IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290 (364)
Q Consensus 228 ~~~~~~~~~~~g~~d~~i~i~d~~~~~---------------~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (364)
+ ..++++ +|+.||.|++||+.+++ + +..+. +...|.+++|+|+|++++++.. |+
T Consensus 147 ~--~~la~~-sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~------d~ 217 (355)
T 3vu4_A 147 N--GLLVYS-NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ------DG 217 (355)
T ss_dssp T--TEEEEE-ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET------TC
T ss_pred c--cEEEEe-CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC------CC
Confidence 6 244443 12389999999999865 1 44554 4578999999999999999854 99
Q ss_pred e-EEEeeCCCCceeeecc-c-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 291 K-LCLWKYPHMTKWGELQ-H-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 291 ~-i~i~d~~~~~~~~~~~-~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
. |++||+.+++++..+. + |...|.+++|+|+|++|++++.|++|++||+..+.
T Consensus 218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 8 9999999999999998 5 99999999999999999999999999999998654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=244.20 Aligned_cols=284 Identities=11% Similarity=0.065 Sum_probs=227.1
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee-----eeecCCCcEEEEEeecC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR-----NLEGHDKRVATASWNHW 140 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~~ 140 (364)
.|+.+|..++.......+.. ...+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+|
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~- 179 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKT-GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE- 179 (433)
T ss_dssp CEEECCBTTCSEEEEEEEEC-SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-
T ss_pred EEEEECCCCCcceEEEEEcC-CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-
Confidence 55555555554444444433 3456799999977788888888999999999998876 4457888999999998
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEeccccc
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
++.++++++.|+.|++||+++++. ...+..|...+.+++|+|+++.++++ +.|+.|++||+++. +.+..+.. ..
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~~~~~~~~-~~ 254 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK---LEIRKTDK-IG 254 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEECCC-CS
T ss_pred CCEEEEEECCCCEEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC---cEEEEecC-CC
Confidence 999999999999999999987664 56666888999999999999988544 47999999998764 33555544 45
Q ss_pred ceeEEEEccCCCcEEEeecCC-----CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 220 AVKALAWCPYQFNVLASGGGT-----QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
.+.+++|+|+++.+++++.+. .|+.|++||+.+++.+..+.+...+..++|+|+++.++++. +.++.|++
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-----~~~~~v~v 329 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD-----MCCSKIEV 329 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEE-----TTTTEEEE
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEe-----cCCCEEEE
Confidence 589999999997666654211 37899999999999888887777899999999998665542 34999999
Q ss_pred eeCCCCceeeeccccccceeEEeecCCCCEEEEEeC---------------CCcEEEEEeeCCCCCcceeccCCceeeee
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA---------------DETLRFWEAFGPSGSGDFVSHLDGLLSLK 359 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 359 (364)
||+.+++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.+++....+.. ...+.+++
T Consensus 330 ~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~ 407 (433)
T 3bws_A 330 YDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLD 407 (433)
T ss_dssp EETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEE
T ss_pred EECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEE
Confidence 9999988887775 6677899999999999988876 57999999998887776665 55789999
Q ss_pred eccC
Q 040533 360 VSPI 363 (364)
Q Consensus 360 ~sp~ 363 (364)
|+|.
T Consensus 408 ~s~d 411 (433)
T 3bws_A 408 VSPD 411 (433)
T ss_dssp ECTT
T ss_pred EcCC
Confidence 9985
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=222.18 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=195.2
Q ss_pred CCCCCCCcceeecccCCCcc----EEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCC--
Q 040533 38 DAPNLRNDYYSNMMDWGRNN----ILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMAS-- 109 (364)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg-- 109 (364)
..|.-.-.+-+.++-|-..+ -+..+....|.+|+..++ +.....+...|+.+|..+.+.||.. ++.++-.+=
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 111 (356)
T 2w18_A 32 KNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI 111 (356)
T ss_dssp CCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE
T ss_pred cCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccc
Confidence 34433333335666675432 566778899999999887 2345666778999999999999654 333322111
Q ss_pred -cEEEEecCCc----ceeeeeecCCCcEEEEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 110 -KLQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 110 -~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
.|+..-+... .....-.+|...|..+ + +++++.+++ .|+.|++|++......+..+..|...+..++|+
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence 1111111111 1111112344444443 4 666666644 599999999966555677778899999999999
Q ss_pred C---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccc---cceeEEEEccCCCcEE-----------EeecCCCCCeE
Q 040533 183 N---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR---AAVKALAWCPYQFNVL-----------ASGGGTQDGCI 245 (364)
Q Consensus 183 ~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~-----------~~~~g~~d~~i 245 (364)
+ ++.+|++++.|++|++||++++ +.++++.+|. ..+.+++|+|++..++ ++| +.|++|
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG--s~D~tI 262 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR--SPVFQL 262 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------CCEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc--CCCcEE
Confidence 9 7799999999999999998775 4577776543 3577789999986543 344 489999
Q ss_pred EEEECCCCeEEEEEe-----cC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee-EEee
Q 040533 246 KIWNVQKGTCIHSVD-----TK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL-ELSQ 318 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~-----~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~ 318 (364)
++||..+++.+..+. .+ ..+.+.. ..+..++++. .|++|+|||+.+++.+.++.+|...+. .++|
T Consensus 263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASgS------~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf 334 (356)
T 2w18_A 263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAIL------TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW 334 (356)
T ss_dssp EEEETTTTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEEE------TTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred EEEECCCCEEEEEEEeeccCCCcceeEccc--cCCCEEEEEc------CCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence 999999999887652 11 2232222 2356677664 499999999999999999999887655 5899
Q ss_pred cCCCCEEEEEeCCCcEEEEEe
Q 040533 319 SPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+|||++|++|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999996
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=243.15 Aligned_cols=265 Identities=11% Similarity=0.135 Sum_probs=183.2
Q ss_pred CCCceEEEEc---CCCCEEEEEecCCcEEEEecCCcc----------eeeeeecCCCcEEEEEee---------------
Q 040533 87 DDFPTSISWS---QDAKTLAVGYMASKLQLWDAETSK----------LIRNLEGHDKRVATASWN--------------- 138 (364)
Q Consensus 87 ~~~v~~~~~s---~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~v~~~~~~--------------- 138 (364)
+....++.|. |++..+++++.++.|.+|+..... .+..+ .+..++..+.|+
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcc
Confidence 3456677774 333334444457889999763211 11111 133344444443
Q ss_pred ----cCCCCEEEEeeCCCcEEEEEcccCcce----eeeeecccCcEEEEEEcC--------CCCEEEEEeCCCeEEEEeC
Q 040533 139 ----HWNGHILTSGSQDKSIINHDVRVSNNV----TSRINAHTAEVCGLKWSN--------EGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 139 ----~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~ 202 (364)
|.++.+|++++.|++|++||.+.+... ...+.+|.+.|++++|+| ++++|++++.|++|++||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 225668999999999999999877532 334678999999999998 7889999999999999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----------------------
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---------------------- 260 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---------------------- 260 (364)
+.. ..+..+..|..++.+++|+|++..++++++ .|++|++||+++++......
T Consensus 174 ~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 174 TDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGE--RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp ETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEE--TTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred CCC---ceeeeecCCCCCcEEEEECCCCCceEEecC--CCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 654 346667788999999999999877888877 89999999999876543321
Q ss_pred ----cCCCeEEEEEc-CCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC---------------
Q 040533 261 ----TKAQICGLEWN-RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP--------------- 320 (364)
Q Consensus 261 ----~~~~v~~~~~~-~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~--------------- 320 (364)
+...+.++.|+ ++++.++++.. |+.+++||+..++....+..|...+..+.+.|
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~------d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILAMCK------SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEEECT------TSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred ecccccccceeeeeecCCCCEEEEEeC------CCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 22456778876 78999988754 99999999988877766666555444443333
Q ss_pred -----CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 321 -----DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 321 -----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.++++|+.||.|++||+.+++....+..|..+|.+|+|||.
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspd 370 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQD 370 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTT
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCC
Confidence 3446788899999999999999998888899999999999995
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-30 Score=223.64 Aligned_cols=247 Identities=11% Similarity=0.099 Sum_probs=203.6
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+| +++++ ++++.|+.|++||+.+++. ...+..+ ..+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~-~~v~~ 78 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNV-IATVPAG-SSPQG 78 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEE-EEEEECS-SSEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECC-CCCEEEEECCCCCeEEEEECCCCeE-EEEEECC-CCccc
Confidence 467888899999999999999998888664 589999999 88765 6777999999999987764 4444444 48999
Q ss_pred EEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE
Q 040533 179 LKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 179 ~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 257 (364)
++|+|++++|+++ +.++.|++||+.+.+ .+..+.. ...+.+++|+|+++.++++++ .++.|++||+.+++.+.
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~---~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNT---VAGTVKT-GKSPLGLALSPDGKKLYVTNN--GDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEEC-SSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCe---EEEEEeC-CCCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEE
Confidence 9999999977654 467999999987643 3555543 456899999999987877765 79999999999999999
Q ss_pred EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe---CCCcE
Q 040533 258 SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA---ADETL 334 (364)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i 334 (364)
.+..+..+..++|+|+++.++++. +.++.|++||+.+++.+..+. +...+.+++|+|+|++|++++ .++.|
T Consensus 153 ~~~~~~~~~~~~~~~dg~~l~~~~-----~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v 226 (391)
T 1l0q_A 153 TVSVGRSPKGIAVTPDGTKVYVAN-----FDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTV 226 (391)
T ss_dssp EEECCSSEEEEEECTTSSEEEEEE-----TTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred EEecCCCcceEEECCCCCEEEEEe-----CCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence 998888899999999999885432 348999999999998877775 456789999999999999888 68999
Q ss_pred EEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 335 RFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 335 ~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++||+.+++.+..+..|. .+.+++|+|.
T Consensus 227 ~~~d~~~~~~~~~~~~~~-~~~~~~~s~d 254 (391)
T 1l0q_A 227 SMIDTGTNKITARIPVGP-DPAGIAVTPD 254 (391)
T ss_dssp EEEETTTTEEEEEEECCS-SEEEEEECTT
T ss_pred EEEECCCCeEEEEEecCC-CccEEEEccC
Confidence 999999888777776654 5789999985
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.7e-29 Score=224.34 Aligned_cols=297 Identities=9% Similarity=0.085 Sum_probs=228.3
Q ss_pred cCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec--CCcceeeeeec
Q 040533 52 DWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA--ETSKLIRNLEG 127 (364)
Q Consensus 52 ~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~ 127 (364)
.+++++ +++...++.|.+||..+++....+.. ++. +..++|+|||++|++++.|+.|.+||+ .+++.+..+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~- 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK- 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence 356654 33444678999999999987655543 333 889999999999999999999999999 8888888887
Q ss_pred CCCcEEEEEeecC---CCCEEEEee-CCCcEEEEEcccCcceeeeeec----------cc-CcEEEEEEcCCCC-EEEEE
Q 040533 128 HDKRVATASWNHW---NGHILTSGS-QDKSIINHDVRVSNNVTSRINA----------HT-AEVCGLKWSNEGN-LLASG 191 (364)
Q Consensus 128 ~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~-~l~~~ 191 (364)
+...+..++|+|. +++++++++ .+++|.+||..+.+. +..+.. |. ..+..+.++|++. ++++.
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 5567899999982 566677666 589999999987764 343332 22 3789999999765 55666
Q ss_pred eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-----CCeE
Q 040533 192 GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-----AQIC 266 (364)
Q Consensus 192 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-----~~v~ 266 (364)
..++.|.+||+....... +..+ .+...+..+.|+|+++++++++. .+++|.+||+.+++++..+... +...
T Consensus 299 ~~~g~i~vvd~~~~~~l~-~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLT-VTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp TTTTEEEEEECTTSSSCE-EEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred CCCCeEEEEEecCCCcce-eEEe-ccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 788999999987754322 2233 35567889999999988887765 6899999999999999888742 2222
Q ss_pred EEEEcCC-ccceeeeccCCccCCCCeEEEeeCCC-------CceeeeccccccceeEEeecCCCCEEEEEe-------CC
Q 040533 267 GLEWNRH-HKEILSGHGFSSSGDGQKLCLWKYPH-------MTKWGELQHQTSRILELSQSPDGLTVVSAA-------AD 331 (364)
Q Consensus 267 ~~~~~~~-~~~l~~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-------~d 331 (364)
.+ ++|+ +..++++. ..++.|.+||..+ ++.+.++..|...+..++++|+|++|++++ .+
T Consensus 375 ~~-~~p~~g~~~~s~~-----~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSH-----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp EE-EETTTEEEEEEEB-----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred cc-CCCCCccEEEecc-----CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence 22 4677 55555542 1279999999998 899999999988889999999999999987 27
Q ss_pred CcEEEEEeeCCCCC-cce--------eccCCceeeeeeccC
Q 040533 332 ETLRFWEAFGPSGS-GDF--------VSHLDGLLSLKVSPI 363 (364)
Q Consensus 332 g~i~vw~~~~~~~~-~~~--------~~~~~~v~~~~~sp~ 363 (364)
++|.+||+.+.+.. ..+ ..+...+..++|+|.
T Consensus 449 ~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 489 (543)
T 1nir_A 449 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 489 (543)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS
T ss_pred ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC
Confidence 79999999998876 333 245678999999985
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=234.98 Aligned_cols=300 Identities=11% Similarity=0.065 Sum_probs=223.1
Q ss_pred eecccCCCcc--EEEEEe-CC-----eEEEEECCCCceeeeeeecCCC----------------------CCceEEEEcC
Q 040533 48 SNMMDWGRNN--ILAIAL-GL-----ELYLWKQENGEVQKLLKVTGED----------------------DFPTSISWSQ 97 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~-~~-----~i~iw~~~~~~~~~~~~~~~~~----------------------~~v~~~~~s~ 97 (364)
+..++|+|++ ++.++. ++ .|++||+.+++...+.....+. ..+.+++|||
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 6778999864 455555 67 8999999999876666543333 3488999999
Q ss_pred CCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCc
Q 040533 98 DAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE 175 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 175 (364)
||++|++++. +.|++||+.++. ....+..|...+..++|+| ++++|+.++. +.|++||+.++.. ......+...
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~-~~i~~~d~~~g~~-~~~~~~~~~~ 194 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRG-RNLWVIDLASGRQ-MQLTADGSTT 194 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEET-TEEEEEETTTTEE-EECCCCCCSS
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeC-CcEEEEecCCCCE-EEeccCCccc
Confidence 9999999975 999999999873 4555667888899999999 9999998874 6899999987653 3322233222
Q ss_pred ----------------EEEEEEcCCCCEEEEEeCCC---------------------------------eEEEEeCCC-C
Q 040533 176 ----------------VCGLKWSNEGNLLASGGDDN---------------------------------LVHVWDHSK-M 205 (364)
Q Consensus 176 ----------------v~~~~~~~~~~~l~~~~~d~---------------------------------~i~iwd~~~-~ 205 (364)
+..++|+|||++|++++.|+ .|.+||+.. .
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47799999999999987665 788999876 4
Q ss_pred CCCcceEEec--ccccceeEEEEccCCCcEEEeec--CCCCCeEEEEECCCCeEEEEEecCC-----CeEEEEEcCCccc
Q 040533 206 SSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGG--GTQDGCIKIWNVQKGTCIHSVDTKA-----QICGLEWNRHHKE 276 (364)
Q Consensus 206 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ 276 (364)
.. ..... .+...+..++| |+++.++++.. +..+..|++||+.+++....+..+. .+..++|+|+|++
T Consensus 275 ~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 275 QT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp CC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred ce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 32 22221 46778999999 99987776542 2246789999999998877665432 4568999999997
Q ss_pred eeeeccCCccCCCCeEEEeeCC-CCceeeeccccccceeEE-eecCCCCEEEE-EeCCC--cEEEEEeeC-CCCCcceec
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQTSRILEL-SQSPDGLTVVS-AAADE--TLRFWEAFG-PSGSGDFVS 350 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~i-~~~~~~~~l~~-~~~dg--~i~vw~~~~-~~~~~~~~~ 350 (364)
++++. .++.+.+|.+. +++ ...+..|...+..+ .|+|+|+.|+. ++.++ .+++|++.. +.....+..
T Consensus 351 ~~~~~------~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 351 LWSSE------RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK 423 (741)
T ss_dssp EEEEC------TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred EEEec------CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence 77663 37766676654 344 77777788888887 59999987754 55555 899999985 444555554
Q ss_pred cCCceeeeeeccC
Q 040533 351 HLDGLLSLKVSPI 363 (364)
Q Consensus 351 ~~~~v~~~~~sp~ 363 (364)
...+.+++|||.
T Consensus 424 -~~~~~~~~~spd 435 (741)
T 2ecf_A 424 -APGMHSASFARN 435 (741)
T ss_dssp -SCSEEEEEECTT
T ss_pred -CCCceEEEECCC
Confidence 667889999985
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=209.48 Aligned_cols=289 Identities=11% Similarity=0.171 Sum_probs=203.0
Q ss_pred EeCCeEEEEECC-CCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-CcEEEEecC--Ccc--eeeeeecCCCcEEEE
Q 040533 62 ALGLELYLWKQE-NGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-SKLQLWDAE--TSK--LIRNLEGHDKRVATA 135 (364)
Q Consensus 62 ~~~~~i~iw~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~--~~~--~~~~~~~~~~~v~~~ 135 (364)
+.++.|++|++. +++......+ .+...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+. .+..+
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 89 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHI 89 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEE
Confidence 468999999985 3433333333 567789999999999999888876 899999997 554 334455433 78899
Q ss_pred EeecCCCCEEEEee-CCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcce
Q 040533 136 SWNHWNGHILTSGS-QDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 136 ~~~~~~~~~l~~~~-~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 211 (364)
+|+| ++++|++++ .++.|.+||+..+. .....+. ....+.+++|+|+++++++++ .++.|.+||+.........
T Consensus 90 ~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 90 STDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EEcC-CCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence 9999 888776665 48899999995221 1233333 334588999999999888877 8999999998762221111
Q ss_pred E--Eecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--CeE--EEEEe---c----CCCeEEEEEcCCccce
Q 040533 212 H--RFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--GTC--IHSVD---T----KAQICGLEWNRHHKEI 277 (364)
Q Consensus 212 ~--~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~--~~~~~---~----~~~v~~~~~~~~~~~l 277 (364)
. .... ....+..++|+|+++.+++++. .++.|.+||+.. ++. ...+. . ...+..++|+|+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 1 2222 3346788999999987877765 689999999953 432 22332 1 1346689999999988
Q ss_pred eeeccCCccCCCCeEEEeeCC----CCceeeeccccccceeEEeecCCCCEEEEEe-CCCcEEEEEeeC--CCC--Ccce
Q 040533 278 LSGHGFSSSGDGQKLCLWKYP----HMTKWGELQHQTSRILELSQSPDGLTVVSAA-ADETLRFWEAFG--PSG--SGDF 348 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~--~~~--~~~~ 348 (364)
+++. ..++.|.+||+. ..+.+..+..+.. +..++|+|+|++|++++ .++.|.+|++.. ++. +..+
T Consensus 246 ~v~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 246 YACD-----RTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp EEEE-----TTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEe-----cCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence 7543 238999999998 2344444554444 88999999999888887 689999997764 322 2223
Q ss_pred eccCCceeeeeeccC
Q 040533 349 VSHLDGLLSLKVSPI 363 (364)
Q Consensus 349 ~~~~~~v~~~~~sp~ 363 (364)
.. .....+++|.|.
T Consensus 320 ~~-g~~p~~i~~~~~ 333 (343)
T 1ri6_A 320 AV-GQGPMWVVVNAH 333 (343)
T ss_dssp EC-SSSCCEEEEEEE
T ss_pred cc-CCCCeeEEEEcc
Confidence 22 356778888774
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-28 Score=205.72 Aligned_cols=273 Identities=11% Similarity=0.051 Sum_probs=203.2
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-CCcEEEEecCCcce-eeeeecCCCcEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-ASKLQLWDAETSKL-IRNLEGHDKRVATA 135 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~~~~~v~~~ 135 (364)
+++...++.|.+||..+++...... .+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+..+..++
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV 89 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred EEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence 4445567999999999998766554 345556 9999999997776665 88999999999987 77777666666669
Q ss_pred EeecCCCCEEEEeeCCC---cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE-eCCCe-EEEEeCCCCCCCcc
Q 040533 136 SWNHWNGHILTSGSQDK---SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG-GDDNL-VHVWDHSKMSSSKC 210 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~~~ 210 (364)
+|+| ++++++++..++ .|.+||+.+++. ...+. ......+++|+|+|++++++ ..++. |.+|++........
T Consensus 90 ~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 90 DITP-DDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp EECT-TSSEEEECCCSSSSCEEEEEETTTTEE-EEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred EECC-CCCEEEEecCCCCcccEEEEECCCCCe-EEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 9999 999888665553 899999987664 44443 34456899999999855554 55578 99999875322110
Q ss_pred e-EEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 211 L-HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 211 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
. ............++|+|+++.+++++. .++.|.+||+.+++. +..+.....+..++|+|+|++++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~----- 239 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLT----- 239 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEEC-----
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEE-----
Confidence 1 111123455789999999987888765 689999999999888 88888888889999999999877653
Q ss_pred CCCCeEEEeeCCCCce--eeecccc----ccc---eeEEeecCCCCEEEEEe-CCCcEEEEEeeCCC
Q 040533 287 GDGQKLCLWKYPHMTK--WGELQHQ----TSR---ILELSQSPDGLTVVSAA-ADETLRFWEAFGPS 343 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~--~~~~~~~----~~~---i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~~~ 343 (364)
..++.|.+||+.+++. +..+..+ ... ...++|+|+|++|++++ .++.|.+||+....
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 2377899999998876 3332221 222 24589999999886655 46799999997654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=209.59 Aligned_cols=248 Identities=12% Similarity=0.042 Sum_probs=194.7
Q ss_pred cEEEEEeC------CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC---cEEEEecCCcceeeeeec
Q 040533 57 NILAIALG------LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS---KLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 57 ~~~~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~ 127 (364)
.++.++.+ +.|++||..++.. ..+.+|...+.+++|+|||++|++++.++ .|++||+.+++.. .+..
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~~~---~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSCSC---EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred EEEEEEecCCCCccceEEEEcCCCCCC---EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 45556554 7999999986543 33447888999999999999999998775 9999999988765 4666
Q ss_pred CCCcEEEEEeecCCCCEEE-EeeCCCc--EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CC--eEEEEe
Q 040533 128 HDKRVATASWNHWNGHILT-SGSQDKS--IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DN--LVHVWD 201 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd 201 (364)
|...+.+++|+| +++.|+ +++.++. |++||+.+++ ...+..|...+.+++|+|+|+.|++++. ++ .|++||
T Consensus 221 ~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 221 FPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp CSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 888999999999 888777 6666655 9999998765 3556678889999999999999988876 44 678888
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
+.... ...+..+...+.+++|+|+++.+++++....+..|.+||+.+++.. .+..+..+.+++|+|+|+.|+.+.
T Consensus 298 ~~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 298 INGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp TTSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEE
T ss_pred CCCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEE
Confidence 77643 3444556678899999999977766653111368999999988774 344445899999999999988775
Q ss_pred cCCccCCCC---eEEEeeCCCCceeeeccccccceeEEeecCCCC
Q 040533 282 GFSSSGDGQ---KLCLWKYPHMTKWGELQHQTSRILELSQSPDGL 323 (364)
Q Consensus 282 ~~~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 323 (364)
. ++ .|++||+. ++....+..|.+.|.+++|+|...
T Consensus 373 ~------~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 373 S------QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp E------ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred c------CCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 3 33 79999986 566778889999999999999653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-29 Score=232.45 Aligned_cols=303 Identities=11% Similarity=0.120 Sum_probs=214.9
Q ss_pred eecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCC---CceEEEEcCCCCEEEEEecC---------CcEEEE
Q 040533 48 SNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDD---FPTSISWSQDAKTLAVGYMA---------SKLQLW 114 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d---------g~i~iw 114 (364)
...++|+|++ +++.+.|+.|++||..+++...+.. .|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~--~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec--cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 5678899864 5555778999999999998755443 4443 49999999999999999764 788899
Q ss_pred ecCCcceeeeee---cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCc----------------
Q 040533 115 DAETSKLIRNLE---GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE---------------- 175 (364)
Q Consensus 115 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---------------- 175 (364)
|+.+++. ..+. .|...+..++|+| +++.|+.++. +.|++||+.+++. ......+...
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEec
Confidence 9998876 3333 3444588999999 9999998886 7999999987664 3333333332
Q ss_pred --EEEEEEcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCCCCcceEEeccc--
Q 040533 176 --VCGLKWSNEGNLLASGGDDN----------------------------------LVHVWDHSKMSSSKCLHRFRDH-- 217 (364)
Q Consensus 176 --v~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~~~-- 217 (364)
+.+++|+|||+.|++++.++ .|++||+..... ...+..+
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~---~~~l~~~~~ 249 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH---DLEMMPPDD 249 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC---CEECCCCCC
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce---eEEeeCCcc
Confidence 37899999999999987543 799999876542 2334332
Q ss_pred ----ccceeEEEEccCCCcEEEeec-CCCCCeEEEEECCCCeEEEEEec--CCCe----EEEEEcCCccceeeeccCCcc
Q 040533 218 ----RAAVKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKGTCIHSVDT--KAQI----CGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 218 ----~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~~~~~--~~~v----~~~~~~~~~~~l~~~~~~~~~ 286 (364)
...+..++|+|+|+.+++... +..+..|++||+.+++....+.. ...+ ..++|+|+|+.++....
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---- 325 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA---- 325 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE----
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe----
Confidence 567899999999975544321 12357899999999987766532 2333 37899999998876411
Q ss_pred CCCC------eEEEeeC-CCCce--eeeccccccceeE-EeecCCCCEEEEEeCC---CcEEEEEeeCCC--CCcceec-
Q 040533 287 GDGQ------KLCLWKY-PHMTK--WGELQHQTSRILE-LSQSPDGLTVVSAAAD---ETLRFWEAFGPS--GSGDFVS- 350 (364)
Q Consensus 287 ~~~~------~i~i~d~-~~~~~--~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d---g~i~vw~~~~~~--~~~~~~~- 350 (364)
..++ .|++||. ..++. ...+..+...+.. ++|+|||+.|+..+.+ +.+++|++.... ....+..
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 405 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD 405 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence 2245 5777883 44441 4555544444544 6999999999766555 789999997543 2333433
Q ss_pred --cCCceeeeeeccC
Q 040533 351 --HLDGLLSLKVSPI 363 (364)
Q Consensus 351 --~~~~v~~~~~sp~ 363 (364)
|...+..++|||.
T Consensus 406 ~~~~~~~~~~~~spd 420 (723)
T 1xfd_A 406 LVENCTYFSASFSHS 420 (723)
T ss_dssp SSSSCCCCEEEECTT
T ss_pred ccCCCCeEEEEECCC
Confidence 5677899999985
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-28 Score=217.43 Aligned_cols=293 Identities=11% Similarity=0.083 Sum_probs=223.0
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEEC--CCCceeeeeeecCCCCCceEEEEcC----CCCEEEEEec-CCcEEEEecCC
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQ----DAKTLAVGYM-ASKLQLWDAET 118 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~-dg~i~iw~~~~ 118 (364)
+..++++|++ +++++.++.|.+||+ .+++....+ . +...+..++|+| ||++|++++. +++|.|||..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i--~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE--e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 4566778764 667778899999999 777654433 2 355689999999 9999999884 89999999999
Q ss_pred cceeeeeecC-----------CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE
Q 040533 119 SKLIRNLEGH-----------DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 119 ~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (364)
++.+..+..+ ...+..+.++|....++++...++.|.+||+.+.+.+......+...+..++|+|++++
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~ 337 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY 337 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence 9988887642 23789999999555677778889999999998765433222245667888999999997
Q ss_pred EEEEe-CCCeEEEEeCCCCCCCcceEEecc----cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-------CeE
Q 040533 188 LASGG-DDNLVHVWDHSKMSSSKCLHRFRD----HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-------GTC 255 (364)
Q Consensus 188 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~~ 255 (364)
+++++ .+++|.+||..+. +.+..+.. |.+....+ ++|++..+++++. ..|++|.+||+.+ +++
T Consensus 338 l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 338 FMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp EEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSE
T ss_pred EEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc-CCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeE
Confidence 76655 5889999998765 34555442 44333333 4777557777753 1479999999998 899
Q ss_pred EEEEecC-CCeEEEEEcCCccceeeeccCCccC---CCCeEEEeeCCCCcee-eec--------cccccceeEEeecCCC
Q 040533 256 IHSVDTK-AQICGLEWNRHHKEILSGHGFSSSG---DGQKLCLWKYPHMTKW-GEL--------QHQTSRILELSQSPDG 322 (364)
Q Consensus 256 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~---~~~~i~i~d~~~~~~~-~~~--------~~~~~~i~~i~~~~~~ 322 (364)
++++..+ ..+..+.++|++++|+++.... . .++.|.+||+.+++.. ..+ ..+...+..+.|+|+|
T Consensus 413 v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~--~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 413 VAELQGQGGGSLFIKTHPKSSHLYVDTTFN--PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp EEEEECSCSCCCCEECCTTCCEEEECCTTC--SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred EEEEEcCCCCceEEEcCCCCCcEEEecCCC--CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 9999876 4678899999999999874211 1 1679999999998877 333 3456789999999999
Q ss_pred CEEEEEe-----CCCcEEEEEeeCCCCCcceec
Q 040533 323 LTVVSAA-----ADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 323 ~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+.|+++. .|+.|.|||..+++.++++..
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 9988662 479999999999988777764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=203.67 Aligned_cols=261 Identities=10% Similarity=0.074 Sum_probs=195.0
Q ss_pred EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-cceeeeeecC-CCcEEEEEeec
Q 040533 62 ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEGH-DKRVATASWNH 139 (364)
Q Consensus 62 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-~~~v~~~~~~~ 139 (364)
+.++.|++||+.+++...+. .|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVW---QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEE---EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CcceeEEEEeCCCCceeeec---cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 35789999999998865433 5788999999999999999986 88999999999 8777666555 36789999999
Q ss_pred CCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCCcceEEecc
Q 040533 140 WNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA-SGGDDNLVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 140 ~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~ 216 (364)
++++|++++ .++...+|.++........+..+ ..+..++|+|+++.|+ +++.++.+.+|+++... .....+..
T Consensus 95 -dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 170 (297)
T 2ojh_A 95 -DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTH 170 (297)
T ss_dssp -TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCC
T ss_pred -CCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceEccc
Confidence 999999988 44556666654332223334333 3488999999999877 77789999999864321 22455666
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-CCeEEEEEec-CCCeEEEEEcCCccceeeeccCCcc-----CCC
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSS-----GDG 289 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~-----~~~ 289 (364)
+...+.+++|+|+++.+++++. .++.+++|++. .+.....+.. ...+..+.|+|++++++.+..-... ..+
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSS--RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred CCCccccceECCCCCEEEEEec--CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 7788999999999977777654 68888999875 4444445443 4568899999999998877531000 012
Q ss_pred CeEEEeeCCCCcee--eeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 290 QKLCLWKYPHMTKW--GELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 290 ~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
+.|++||+.+++.. ..+..|...+..++|+|+|++|++++.|.
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 67999999887653 34447788899999999999998887654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=195.99 Aligned_cols=262 Identities=14% Similarity=0.117 Sum_probs=183.9
Q ss_pred ceEEEEcCCCC---EEEEEecCCcEEEEecCCc---ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcE---EEEEcc
Q 040533 90 PTSISWSQDAK---TLAVGYMASKLQLWDAETS---KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI---INHDVR 160 (364)
Q Consensus 90 v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i---~~~d~~ 160 (364)
+.++-|-..+- .+++++ ...|++|+..++ +++.+...|..+|..+.+.|+..+++.++-.+=.+ +..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 44555644332 566665 568999999998 88999999999999999999555555544322222 111111
Q ss_pred cC----cceeeeeecccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcceEEecccccceeEEEEcc---CCC
Q 040533 161 VS----NNVTSRINAHTAEVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQF 231 (364)
Q Consensus 161 ~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~ 231 (364)
.. .+ .....+|...+..+ ++++++.+++ .|+.|++|++... ++.+..+..|...+..++|+| ++
T Consensus 121 pd~~~~~~-~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~- 193 (356)
T 2w18_A 121 SDDESEKQ-VLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQ- 193 (356)
T ss_dssp -----CCE-EEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETST-
T ss_pred CCcccccc-EEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCC-
Confidence 11 11 12223455455554 5666666543 5999999998542 345677778999999999988 44
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEEecC----CCeEEEEEcCCccceeeecc------CCccCCCCeEEEeeCCCCc
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTK----AQICGLEWNRHHKEILSGHG------FSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~------~~~~~~~~~i~i~d~~~~~ 301 (364)
.++++++ .|++|++||++++++++++..+ ..+.+++|+|+|.+++++.. .++++.|++|++||..+++
T Consensus 194 ~~LaSgS--~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 194 EALLGTT--IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp TEEEEEE--TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred ceEEEec--CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 6777776 8999999999999999999743 34777899999999876542 3567889999999999998
Q ss_pred eeeec-----cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCcee-eeeeccC
Q 040533 302 KWGEL-----QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLL-SLKVSPI 363 (364)
Q Consensus 302 ~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~sp~ 363 (364)
.+..+ .+|...+.+..+ ++.++++++.||+|+|||+.+++.+.++.+|.+.+. +++|||.
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence 87654 366655554444 478999999999999999999999999999988766 5899995
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=219.95 Aligned_cols=281 Identities=13% Similarity=0.124 Sum_probs=206.6
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-----cce
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-----SKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-----~~~ 121 (364)
.+..++|+|++.++++.++.|++||+.+++...+. .+...+.+++|||||++|+++ .++.|++|++.+ ++.
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF---DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEE---CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEEcc---CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 47788999988888888999999999988764433 556778999999999999996 689999999998 776
Q ss_pred eeeeecCCCc--------------EEEEEeecCCCCEEEEee---------------------------------CCCcE
Q 040533 122 IRNLEGHDKR--------------VATASWNHWNGHILTSGS---------------------------------QDKSI 154 (364)
Q Consensus 122 ~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~---------------------------------~dg~i 154 (364)
......+... +.+++|+| ++++|++++ .+..|
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 6544433332 47899999 999999887 34679
Q ss_pred EEEEcccCcceeeee-ecccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCCcceEEeccccc---ceeEEE
Q 040533 155 INHDVRVSNNVTSRI-NAHTAEVCGLKWSNEGNLLASGGDDN-----LVHVWDHSKMSSSKCLHRFRDHRA---AVKALA 225 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~ 225 (364)
.+||+.++....... ..|...+..++|+|||+.|++++.++ .|++||+.++.....+.. ..+.. .+..++
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCCE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCce
Confidence 999998765322221 24667899999999999999887665 899999876522111211 11222 246789
Q ss_pred Ecc--CCCcEEEeecCCCCCeEEEEECC-CCeEEEEEecC-CCeEE-EEEcCCccceeeeccCCccCCC----CeEEEee
Q 040533 226 WCP--YQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDTK-AQICG-LEWNRHHKEILSGHGFSSSGDG----QKLCLWK 296 (364)
Q Consensus 226 ~~~--~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~-~~v~~-~~~~~~~~~l~~~~~~~~~~~~----~~i~i~d 296 (364)
|+| +++ +++++. .|+.+++|++. ++..+..+..+ ..+.. ++|+|+++.++.+.. .+ ..|+.||
T Consensus 317 ~sp~~dg~-~l~~~~--~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~-----~~~~~~~~l~~~d 388 (706)
T 2z3z_A 317 FLPGSNNQ-FIWQSR--RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST-----EASPLERHFYCID 388 (706)
T ss_dssp ECTTCSSE-EEEEEC--TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES-----SSCTTCBEEEEEE
T ss_pred eecCCCCE-EEEEEc--cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec-----CCCCceEEEEEEE
Confidence 999 886 556654 78888888876 56666666543 45666 799999998876542 23 3788888
Q ss_pred CCCCceeeeccccccceeEEeecCCCCEEEEEeCC----CcEEEEEeeCCC
Q 040533 297 YPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD----ETLRFWEAFGPS 343 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~vw~~~~~~ 343 (364)
..+++ ...+. +...+.+++|+|||++|+....+ +.|++||+.+++
T Consensus 389 ~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 389 IKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 87765 33443 56678999999999988876443 569999988765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=197.95 Aligned_cols=272 Identities=15% Similarity=0.090 Sum_probs=206.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCC-CceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeecC-----CC
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDD-FPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEGH-----DK 130 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~-----~~ 130 (364)
+++++.++.|.+||..+++....... ++.. .+..++|+|++++++ ++..++.|.+||+.+++.+..+... ..
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 56777899999999999887655543 2222 478999999998765 4556789999999999887766532 12
Q ss_pred cEEEEEeecCCCCEEEEee------------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 131 RVATASWNHWNGHILTSGS------------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
.+..++|+| ++++|++++ .++.|.+||+.+++. ...+.. ...+.+++|+|++++++++ ++.|.
T Consensus 83 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 83 SLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp CTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred cccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence 567899999 898888876 579999999986653 333333 4557889999999988887 68899
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC-----------------------eEEEEECCCCeE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG-----------------------CIKIWNVQKGTC 255 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-----------------------~i~i~d~~~~~~ 255 (364)
+||+.+.. ....+..+. ....+.|+|++..+++++. .++ .|.+||+.+++.
T Consensus 158 ~~d~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 158 VMDPEAGT---LVEDKPIQS-WEAETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp EEETTTTE---EEEEECSTT-TTTTTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred EEECCCCc---Eeeeeeccc-cCCCceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 99987643 344443322 1123378999877766543 333 478999999877
Q ss_pred EEEE---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 256 IHSV---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 256 ~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
. .+ .....+..++|+|++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.++
T Consensus 232 ~-~~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 232 A-MREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp E-EEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSS
T ss_pred e-EeecCCCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCC
Confidence 5 32 233567889999999999887 789999999999888777643 4578999999999999999999
Q ss_pred cEEEEEeeCCCCCcceecc
Q 040533 333 TLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 333 ~i~vw~~~~~~~~~~~~~~ 351 (364)
.|.+||+.+++.+..+..+
T Consensus 302 ~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 302 DLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEEEETTTCCEEEEEECG
T ss_pred cEEEEECcCCcEEEEEEcC
Confidence 9999999998887777644
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-26 Score=193.82 Aligned_cols=268 Identities=15% Similarity=0.143 Sum_probs=207.2
Q ss_pred eecccCCCcc-EEEEEe--------CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecC
Q 040533 48 SNMMDWGRNN-ILAIAL--------GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAE 117 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~--------~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~ 117 (364)
...+++++++ .+.++. ++.|.+||..+++....... ...+..++|+|++++++++ ..++.|.+||..
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 4567777753 444333 56899999999987666543 3457889999999966555 457899999999
Q ss_pred CcceeeeeecCCC---------cEEEEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 118 TSKLIRNLEGHDK---------RVATASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 118 ~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
+++.+..+..+.. .+.+++|+| +++.+++++ .++.|.+||+.+++. ...+..+...+.+++|+|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCEEETTTT
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEEECCCCC
Confidence 9998887775432 278899999 888776665 478899999987664 444544555688899999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecc----cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRD----HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 262 (364)
++++++.++.|.+||+.+.. .+..+.. +...+..++|+|+++.++++.. .++.|.+||+.+++.+..+...
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNK---ILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp EEEEECTTSEEEEEETTTTE---EEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEECS
T ss_pred EEEEEcCCCeEEEEECCCCe---EEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEEcC
Confidence 99999999999999987643 3444332 4456788999999987877765 6799999999999998888765
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
.+ ..++|+|++++++++. ..++.|.+||..+++.+..+... ..+.+++|+|+|++|+++..++
T Consensus 273 ~~-~~~~~s~dg~~l~v~~-----~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 ES-LAVLFNPARNEAYVTH-----RQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp SC-CCEEEETTTTEEEEEE-----TTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CC-ceEEECCCCCEEEEEE-----CCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 54 6799999999776653 34899999999999988887654 3679999999999887776553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-27 Score=218.23 Aligned_cols=299 Identities=13% Similarity=0.137 Sum_probs=204.2
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCce--eeeeeecC--------------CCCCceEEEEcCCCCEEEEEecCCcE
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEV--QKLLKVTG--------------EDDFPTSISWSQDAKTLAVGYMASKL 111 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~--~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~dg~i 111 (364)
+..+.|..+.++..+.++ | +||..+++. ..+..... +...|.+++|||| +.++.+ .++.|
T Consensus 28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 28 VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 344677744566666666 8 999999887 44432211 0156999999999 666666 46999
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc-----CcceeeeeecccCc-----------
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV-----SNNVTSRINAHTAE----------- 175 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----~~~~~~~~~~~~~~----------- 175 (364)
++||+.+++... +..+...+.+++|+| +++.|+.+ .++.|++||+.+ ++. ......+...
T Consensus 104 ~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~-~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 104 VGFDMLARKVTY-LFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRA-IAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEETTTTEEEE-EECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCC-EESCSCCBTTEEESSCCGGGC
T ss_pred EEEECCCCceEE-ccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCc-EEeccCCCCCeEcccchhhhh
Confidence 999999886554 444677788999999 99999885 679999999987 553 3322233332
Q ss_pred ---EEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEeCCCCCCCcceEEeccccc
Q 040533 176 ---VCGLKWSNEGNLLASGG---------------------------------DDNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 176 ---v~~~~~~~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
+.+++|+|||++|++++ .+..|++||+..... ..+.....+..
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 258 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEK 258 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTC
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCCCCce
Confidence 47899999999999987 446899999876432 11111124567
Q ss_pred ceeEEEEccCCCcEEEeec--CCCCCeEEEEECCCCeEEEEE-ec--CC---CeEEEEEcC--CccceeeeccCCccCCC
Q 040533 220 AVKALAWCPYQFNVLASGG--GTQDGCIKIWNVQKGTCIHSV-DT--KA---QICGLEWNR--HHKEILSGHGFSSSGDG 289 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~-~~--~~---~v~~~~~~~--~~~~l~~~~~~~~~~~~ 289 (364)
.+.+++|+|+++.++++.. +..+..|.+||+.+++....+ .. .. .+..+.|+| +|++++++.. +
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~------~ 332 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR------D 332 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT------T
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc------C
Confidence 7899999999976666442 001248999999998433333 21 21 246789999 9998877643 7
Q ss_pred CeEEEeeCC-CCceeeeccccccceeE-EeecCCCCEEEEEeCC-C----cEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 290 QKLCLWKYP-HMTKWGELQHQTSRILE-LSQSPDGLTVVSAAAD-E----TLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 290 ~~i~i~d~~-~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d-g----~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+.+++|++. +++.+..+..+...+.. ++|+|+|+.|+.++.+ + .|..||+.+++ ...+ .+...+.+++|||
T Consensus 333 g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~sp 410 (706)
T 2z3z_A 333 GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-TPESGMHRTQLSP 410 (706)
T ss_dssp SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-CCSSSEEEEEECT
T ss_pred CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-cCCCceEEEEECC
Confidence 888888876 67777788778777877 7999999987665544 4 45555555544 3333 4677899999998
Q ss_pred C
Q 040533 363 I 363 (364)
Q Consensus 363 ~ 363 (364)
.
T Consensus 411 d 411 (706)
T 2z3z_A 411 D 411 (706)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=192.72 Aligned_cols=268 Identities=9% Similarity=0.083 Sum_probs=186.9
Q ss_pred CCeEEEEEC--CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec---CCcEEEEecCCcc--eeeeeecCCCcEEEEE
Q 040533 64 GLELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM---ASKLQLWDAETSK--LIRNLEGHDKRVATAS 136 (364)
Q Consensus 64 ~~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~ 136 (364)
++.|++|++ .+++...+... .+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~-~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLL-AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEE-EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeee-eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 345666654 45665443333 4456788999999999 555544 5899999997765 3444455677888999
Q ss_pred eecCCCCEEEEee-CCCcEEEEEcccCcce--eeeeec---------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 137 WNHWNGHILTSGS-QDKSIINHDVRVSNNV--TSRINA---------HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 137 ~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
|+| ++++|++++ .++.|.+|++...... ...... +...+.+++|+|+++++++...++.|.+||+..
T Consensus 93 ~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 93 VDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred ECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 999 899888777 7789999999643321 111111 122488999999999666666788999999873
Q ss_pred CCCCcceEEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--CeE--EEEEec-C------CCeEEEEEcC
Q 040533 205 MSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--GTC--IHSVDT-K------AQICGLEWNR 272 (364)
Q Consensus 205 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~--~~~~~~-~------~~v~~~~~~~ 272 (364)
.........+.. ....+..++|+|+++.++++.. .++.|.+|++.. ++. +..+.. . ..+..++|+|
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 222122222222 2235778999999987777765 689999999874 543 223322 1 3488899999
Q ss_pred CccceeeeccCCccCCCCeEEEeeCCC---CceeeeccccccceeEEeecCCCCEEEEEeCC-CcEEEEEeeC
Q 040533 273 HHKEILSGHGFSSSGDGQKLCLWKYPH---MTKWGELQHQTSRILELSQSPDGLTVVSAAAD-ETLRFWEAFG 341 (364)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~vw~~~~ 341 (364)
+|++++++. ..++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.+ +.|.+|++..
T Consensus 250 dG~~l~v~~-----~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 250 DGHFLYVSN-----RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp TSCEEEEEE-----ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEe-----CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 999886543 2378999999973 34555555666678999999999998888764 8999997653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=216.33 Aligned_cols=264 Identities=10% Similarity=0.030 Sum_probs=202.0
Q ss_pred CCCceEEEEcCCCCEEEEEec-CC-----cEEEEecCCcceeeeeecCCC------------------------cEEEEE
Q 040533 87 DDFPTSISWSQDAKTLAVGYM-AS-----KLQLWDAETSKLIRNLEGHDK------------------------RVATAS 136 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~------------------------~v~~~~ 136 (364)
...+.+++|||||++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999988 88 899999999987766654432 378999
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF 214 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 214 (364)
|+| ++++|++++. +.|++||+.++. . ...+..+...+..++|+|||++|++++ ++.|++||+..+.. ....
T Consensus 116 ~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~-~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~---~~~~ 188 (741)
T 2ecf_A 116 WSP-DAQRLLFPLG-GELYLYDLKQEGKAA-VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ---MQLT 188 (741)
T ss_dssp ECT-TSSEEEEEET-TEEEEEESSSCSTTS-CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE---EECC
T ss_pred ECC-CCCEEEEEeC-CcEEEEECCCCCcce-EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE---EEec
Confidence 999 9999998886 899999998762 2 344567778899999999999999987 46899999876432 2222
Q ss_pred ccccc----------------ceeEEEEccCCCcEEEeecCCCCC---------------------------------eE
Q 040533 215 RDHRA----------------AVKALAWCPYQFNVLASGGGTQDG---------------------------------CI 245 (364)
Q Consensus 215 ~~~~~----------------~v~~~~~~~~~~~~~~~~~g~~d~---------------------------------~i 245 (364)
..+.. .+..++|+|+|+.++++.. |+ .|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~---d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI---DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE---ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEE---cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 22222 1478999999987777642 33 78
Q ss_pred EEEECCC-CeEEEEEe---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc----ceeEEe
Q 040533 246 KIWNVQK-GTCIHSVD---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS----RILELS 317 (364)
Q Consensus 246 ~i~d~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~i~ 317 (364)
.+||+.+ ++...... +...+..++| |+|+.|+.+.. .....+..|++||+.+++....+..+.. .+..++
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~-~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQ-SRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEE-ETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEe-cccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 9999988 77654432 3356899999 99999986532 1123467899999999988776665543 456899
Q ss_pred ecCCCCEEEEEeCCCcEEEEEee-CCCCCcceeccCCceeee-eeccC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAF-GPSGSGDFVSHLDGLLSL-KVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~v~~~-~~sp~ 363 (364)
|+|||+++++++.||.+++|.+. .+. ...+..|...|.++ .|||.
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~d 390 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEK 390 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETT
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCC
Confidence 99999999999999998888876 334 66666777788887 59985
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=192.53 Aligned_cols=245 Identities=13% Similarity=0.136 Sum_probs=185.1
Q ss_pred EecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc-Ccceeeeeecc-cCcEEEEEEc
Q 040533 105 GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV-SNNVTSRINAH-TAEVCGLKWS 182 (364)
Q Consensus 105 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~-~~~v~~~~~~ 182 (364)
++.++.|++||+.+++... +..|...+.+++|+| ++++|++++ ++.|.+||+.+ ++. ......+ ...+.+++|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 4568899999999887664 445888999999999 999999886 78999999987 553 4444444 4678899999
Q ss_pred CCCCEEEEEe--CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC--CCCeEEEE
Q 040533 183 NEGNLLASGG--DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV--QKGTCIHS 258 (364)
Q Consensus 183 ~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~--~~~~~~~~ 258 (364)
|++++|++++ .++...+|.++... .....+..+ ..+..++|+|+++.+++++. .++.+++|++ .+++....
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~-~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTG--GTPRLMTKN-LPSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGVETRL 168 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTC--CCCEECCSS-SSEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCCEEEC
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCC--CceEEeecC-CCccceEECCCCCEEEEEEC--CCCceEEEEEECCCCcceEc
Confidence 9999999998 33445555443211 113344333 34888999999987876665 6888888885 44554444
Q ss_pred EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-CCceeeeccccccceeEEeecCCCCEEEEEeCC------
Q 040533 259 VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQTSRILELSQSPDGLTVVSAAAD------ 331 (364)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------ 331 (364)
......+.++.|+|+++.++.+. ..++.+.+|++. .+..+..+..|...+..++|+|+|++|++++.+
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNS-----SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEE-----CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred ccCCCccccceECCCCCEEEEEe-----cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 44557799999999999887653 237788888876 566677788888889999999999999988776
Q ss_pred -----CcEEEEEeeCCCCCcc--eeccCCceeeeeeccC
Q 040533 332 -----ETLRFWEAFGPSGSGD--FVSHLDGLLSLKVSPI 363 (364)
Q Consensus 332 -----g~i~vw~~~~~~~~~~--~~~~~~~v~~~~~sp~ 363 (364)
+.|++||+.+++.... +.+|...+.+++|+|.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 282 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD 282 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT
T ss_pred cccCceEEEEEecCCCCceeeeccCCCCcccccceECCC
Confidence 5699999988766333 3377889999999985
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-25 Score=189.33 Aligned_cols=260 Identities=10% Similarity=0.085 Sum_probs=202.6
Q ss_pred CCCceEEEEcCCCCEEEEEec-------CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEE
Q 040533 87 DDFPTSISWSQDAKTLAVGYM-------ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHD 158 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d 158 (364)
...+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+| +++ ++++...++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEEEe
Confidence 446789999999999888874 56899999999998888774 34578899999 777 455556679999999
Q ss_pred cccCcceeeeeecccC---------cEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcceEEecccccceeEEEEc
Q 040533 159 VRVSNNVTSRINAHTA---------EVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 227 (364)
+.+++. ...+..+.. .+.+++|+|+++++++++ .++.|.+||..+. +.+..+..+...+..++|+
T Consensus 118 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 118 AKTGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI---KLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp TTTCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT---EEEEEECCCCTTCCCCEEE
T ss_pred CCCCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC---ceEEEecCCCCccceEEEC
Confidence 987764 344433322 278899999999877776 4789999998764 3455555455668899999
Q ss_pred cCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 228 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
|+++.++++. .++.|.+||+.+++....+.. ...+..++|+|++++++++. ..++.|.+||..+++.
T Consensus 194 ~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 194 SEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD-----SKAAEVLVVDTRNGNI 265 (353)
T ss_dssp TTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE-----SSSSEEEEEETTTCCE
T ss_pred CCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe-----CCCCEEEEEECCCCcE
Confidence 9997766654 589999999999999888764 23477899999999887764 2369999999999998
Q ss_pred eeeccccccceeEEeecCCCCEEEEEe-CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 303 WGELQHQTSRILELSQSPDGLTVVSAA-ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 303 ~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+..+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+.. ...+.+++|+|.
T Consensus 266 ~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~d 324 (353)
T 3vgz_A 266 LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSAD 324 (353)
T ss_dssp EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTT
T ss_pred EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCC
Confidence 88776543 26799999999666555 689999999998877766654 446889999985
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=218.14 Aligned_cols=294 Identities=9% Similarity=0.050 Sum_probs=220.7
Q ss_pred eeecccCCCcc-EEE-EEeC------CeEEEEECCCCceeeeeeecCCCCCc-------eEEEEcCCCCEEEEEecC---
Q 040533 47 YSNMMDWGRNN-ILA-IALG------LELYLWKQENGEVQKLLKVTGEDDFP-------TSISWSQDAKTLAVGYMA--- 108 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~-~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~v-------~~~~~s~~~~~l~~~~~d--- 108 (364)
.+..++|||++ .++ ++.+ ..|++|+..+++. ..+..|...+ .+++|+|||+++++++.+
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~---~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~ 130 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI---KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF 130 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE---EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS
T ss_pred cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe---EEcccCCCcccccccccccccCCCCCEEEEEECCcCCC
Confidence 47788999975 444 3332 3899999998874 3345777777 899999999977777644
Q ss_pred ---CcEEEEecCCccee-------------------------------------------------eeeecCCCcEEEEE
Q 040533 109 ---SKLQLWDAETSKLI-------------------------------------------------RNLEGHDKRVATAS 136 (364)
Q Consensus 109 ---g~i~iw~~~~~~~~-------------------------------------------------~~~~~~~~~v~~~~ 136 (364)
..|.+|++.+++.. ..+.+|...+.++.
T Consensus 131 ~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~ 210 (1045)
T 1k32_A 131 SSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPV 210 (1045)
T ss_dssp TTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEE
T ss_pred cccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceE
Confidence 35788887655422 12234667788888
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 216 (364)
|++ + .++++++.++.+.+|.+.........+..|. .+..++|+|+|+.|+++. ++.|++||+.. ..+..+..
T Consensus 211 ~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~----~~l~~l~~ 282 (1045)
T 1k32_A 211 IVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDT----EKIEKIEI 282 (1045)
T ss_dssp EET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTT----CCEEECCC
T ss_pred EeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCc----eEeeeecc
Confidence 987 5 6777888889999998765333344454554 356779999999898875 89999999832 22334433
Q ss_pred -----------cccceeEEEEc-cCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-CeEEEEEcCCccceeeeccC
Q 040533 217 -----------HRAAVKALAWC-PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-QICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 217 -----------~~~~v~~~~~~-~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~ 283 (364)
|...+.+++|+ |+++.+++.. ++.+.+|++.+++......+.. .+..++|+ +|+.++.+..
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~- 356 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR- 356 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE----cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-
Confidence 34478999999 9997666543 7899999998887655333445 78999999 9998887643
Q ss_pred CccCCCCeEE-EeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 284 SSSGDGQKLC-LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 284 ~~~~~~~~i~-i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
++.+. +|++.+++... +..|...+..++|+|||++|++++.++.|++||+.+++....+.+|.+.+.+++|||
T Consensus 357 -----~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 357 -----EGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp -----TEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred -----CCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence 77888 99998776544 447778899999999999999999999999999998887766668899999999999
Q ss_pred C
Q 040533 363 I 363 (364)
Q Consensus 363 ~ 363 (364)
.
T Consensus 431 D 431 (1045)
T 1k32_A 431 N 431 (1045)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-24 Score=184.04 Aligned_cols=286 Identities=12% Similarity=0.099 Sum_probs=195.4
Q ss_pred CCeEEEEEC--CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC----CcEEEEecCC--cce--eeeeecCCCcEE
Q 040533 64 GLELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA----SKLQLWDAET--SKL--IRNLEGHDKRVA 133 (364)
Q Consensus 64 ~~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~--~~~--~~~~~~~~~~v~ 133 (364)
++.|++|++ .+++...+... +...+..++|+|||++|++++.+ +.|.+|++.. ++. +.....+.....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC 103 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence 467888865 56766555544 67778899999999999998875 7999998865 432 333444555677
Q ss_pred EEEeecCCCCEEEEee-CCCcEEEEEcccCcceeee--e---e--------cccCcEEEEEEcCCCCEEEEEe-CCCeEE
Q 040533 134 TASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSR--I---N--------AHTAEVCGLKWSNEGNLLASGG-DDNLVH 198 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~--~---~--------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~ 198 (364)
.+++ ++++|++++ .++.|.+|++.....+... . . .+...+.+++|+|+|+++++++ .++.|.
T Consensus 104 ~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 104 YLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 7777 566565555 6889999999754432111 0 0 1123458899999999766655 578999
Q ss_pred EEeCCCCCC------Ccc----eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEEec----C
Q 040533 199 VWDHSKMSS------SKC----LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSVDT----K 262 (364)
Q Consensus 199 iwd~~~~~~------~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~----~ 262 (364)
+|++..... ... ..........+..++|+|+++.++++.. .++.|.+||+.+++.. ..+.. .
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 258 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNA 258 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCC
Confidence 999875431 100 1112223455789999999987777764 6899999999877542 33322 1
Q ss_pred CCeEEEEEcCCccceeeeccCCccCC-CCeEEEeeCC--CCc--eeeeccccccceeEEeecCCCCEEEEEe-CCCcEEE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGD-GQKLCLWKYP--HMT--KWGELQHQTSRILELSQSPDGLTVVSAA-ADETLRF 336 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~-~~~i~i~d~~--~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~v 336 (364)
.....++|+|+|++++++.. . ++.|.+|++. +++ .+..+.. ...+..++|+|+|++|++++ .++.|.+
T Consensus 259 ~~~~~i~~spdg~~l~v~~~-----~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 259 QGSGDIHLSPDGKYLYASNR-----LKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp CCEEEEEECTTSSEEEEEEC-----SSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCcccEEECCCCCEEEEECC-----CCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEE
Confidence 34679999999999877642 2 4789999985 344 3444444 45678999999999988887 6789999
Q ss_pred EEee--CCCCCcce-eccCCceeeeeecc
Q 040533 337 WEAF--GPSGSGDF-VSHLDGLLSLKVSP 362 (364)
Q Consensus 337 w~~~--~~~~~~~~-~~~~~~v~~~~~sp 362 (364)
|++. +++..... ..+...+.|++|.+
T Consensus 333 ~~~d~~~g~~~~~~~~~~~~~p~~v~~~~ 361 (361)
T 3scy_A 333 FERDQATGLLTDIKKDIKVDKPVCLKFVD 361 (361)
T ss_dssp EEECTTTCCEEECSCCEECSSEEEEEEEC
T ss_pred EEEECCCCcEeecceeeeCCCCeEEEEcC
Confidence 8776 34332222 13456789999863
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=185.39 Aligned_cols=237 Identities=6% Similarity=0.082 Sum_probs=178.6
Q ss_pred EEcCCCCE-EEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcceeeeeec
Q 040533 94 SWSQDAKT-LAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNNVTSRINA 171 (364)
Q Consensus 94 ~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~ 171 (364)
.|.+++++ ++++..++.|.+||+.+++....+..+...+ .++|+| +++++++++. ++.|.+||+.++......+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45666555 6677788999999999999988887766677 999999 8876665554 889999999877643455555
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe-EEE
Q 040533 172 HTAEVCGLKWSNEGNLLASGGDDN---LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC-IKI 247 (364)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i 247 (364)
+..+..+++|+|++++++++..++ .|.+||+.... .+..+.. .....+++|+|+++.++++.. .++. |.+
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~---~~~~~~~-~~~~~~~~~spdg~~l~~~~~--~~~~~i~~ 155 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK---FISTIPI-PYDAVGIAISPNGNGLILIDR--SSANTVRR 155 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE---EEEEEEC-CTTEEEEEECTTSSCEEEEEE--TTTTEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC---eEEEEEC-CCCccceEECCCCCEEEEEec--CCCceEEE
Confidence 666655599999999999665553 89999987643 3444443 345689999999988888765 5677 999
Q ss_pred EECCCCeEE-----EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce---eeeccccccceeEEeec
Q 040533 248 WNVQKGTCI-----HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---WGELQHQTSRILELSQS 319 (364)
Q Consensus 248 ~d~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~ 319 (364)
|++.....+ ..+........++|+|+|++++++. ..++.|.+||+.+++. +..+..+ ..+..++|+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-----~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~s 229 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN-----LIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVS 229 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE-----TTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEEC
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe-----CCCCeEEEEECCCCcccceeeeccCC-CCCceEEEC
Confidence 998764332 2334456689999999999776553 2388999999999888 7666644 567899999
Q ss_pred CCCCEEEEEe-CCCcEEEEEeeCCCC
Q 040533 320 PDGLTVVSAA-ADETLRFWEAFGPSG 344 (364)
Q Consensus 320 ~~~~~l~~~~-~dg~i~vw~~~~~~~ 344 (364)
|+|++|++++ .++.|.+||+.+++.
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCce
Confidence 9999776654 578899999988765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=217.84 Aligned_cols=258 Identities=9% Similarity=0.041 Sum_probs=201.4
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.+|...+.++.|+++ .++++++.+|.+.||.+.. +.....+..|. .+...+|+| +++.|+.+ .++.|.+||+...
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNT-DGRRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEE-SSSCEEEE-ETTEEEEECTTTC
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcC-CCCEEEEE-eCCEEEEecCCce
Confidence 467778889999988 6667777889999998753 44455555554 466779999 89888887 4889999998433
Q ss_pred cceeeeeec-----------ccCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc-ceeEEEEccC
Q 040533 163 NNVTSRINA-----------HTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA-AVKALAWCPY 229 (364)
Q Consensus 163 ~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 229 (364)
. +..+.. |...+.+++|+ |+|+.|++++ ++.+.+|++.... ...+..+.. .+..++|+ +
T Consensus 276 -~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 276 -K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY----VLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp -C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB----EEECSCCSCEEEEEECSS-S
T ss_pred -E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc----eEEccCCCcceEEeeeEc-C
Confidence 2 223333 34468899999 9999999888 7899999976542 344556666 89999999 8
Q ss_pred CCcEEEeecCCCCCeEE-EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 230 QFNVLASGGGTQDGCIK-IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 230 ~~~~~~~~~g~~d~~i~-i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
++.++..+ .++.+. +||+.+++......+...+..++|+|+|+.++.+.. ++.|++||+.+++.......
T Consensus 348 g~~l~~~s---~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~------~~~v~~~d~~tg~~~~~~~~ 418 (1045)
T 1k32_A 348 KVAFIHGT---REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND------RFEIMTVDLETGKPTVIERS 418 (1045)
T ss_dssp EEEEEEEE---TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEE---CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC------CCeEEEEECCCCceEEeccC
Confidence 86555543 477888 999988765544434467999999999999998754 88999999999988887778
Q ss_pred cccceeEEeecCCCCEEEEEeCCC----------cEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADE----------TLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg----------~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|...+.+++|+|||++|++++.++ .|++||+.+++ ...+..|...+.+++|+|.
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTT
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCC
Confidence 888999999999999999887654 89999998876 5666778888999999985
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-24 Score=181.38 Aligned_cols=264 Identities=11% Similarity=0.117 Sum_probs=182.7
Q ss_pred eecccCCCcc--EEEEEeC-CeEEEEECC--CCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-CCcEEEEecC---C
Q 040533 48 SNMMDWGRNN--ILAIALG-LELYLWKQE--NGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-ASKLQLWDAE---T 118 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~-~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~---~ 118 (364)
...++|+|++ +++++.+ +.|.+|++. +++...+..+..+. .+.+++|+|++++|++++. ++.|.+||+. .
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 118 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP 118 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence 5668888864 5555554 899999997 66655555554434 7899999999998877664 7889999994 4
Q ss_pred cceeeeeecCCCcEEEEEeecCCCCEEEEee-CCCcEEEEEcccCcceee----eeec-ccCcEEEEEEcCCCCEEEEEe
Q 040533 119 SKLIRNLEGHDKRVATASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTS----RINA-HTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~ 192 (364)
.+....+.. ...+.+++|+| +++++++++ .++.|.+||+.+...... .... ....+..++|+|+++++++++
T Consensus 119 ~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 119 VGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp EEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred ccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe
Confidence 444555543 34688999999 888777776 899999999986332221 1222 345788999999999776554
Q ss_pred -CCCeEEEEeCCCCC-CCcceEEec---cc---ccceeEEEEccCCCcEEEeecCCCCCeEEEEECC--C--CeEEEEEe
Q 040533 193 -DDNLVHVWDHSKMS-SSKCLHRFR---DH---RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ--K--GTCIHSVD 260 (364)
Q Consensus 193 -~d~~i~iwd~~~~~-~~~~~~~~~---~~---~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~--~~~~~~~~ 260 (364)
.++.|.+||+.... ......... .. ...+..++|+|+++.++++.. .++.|.+||+. + .+.+..+.
T Consensus 197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~ 274 (343)
T 1ri6_A 197 ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQP 274 (343)
T ss_dssp TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEE
T ss_pred CCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeec
Confidence 78999999986421 111122221 11 234668999999988887765 68999999998 2 34555566
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC--CCCc--eeeeccccccceeEEeecCCC
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY--PHMT--KWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~--~~~~--~~~~~~~~~~~i~~i~~~~~~ 322 (364)
....+..++|+|+|++++++. ..++.|.+|++ .+++ .+..+... ....+++|.|+.
T Consensus 275 ~~~~~~~~~~s~dg~~l~~~~-----~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 275 TETQPRGFNVDHSGKYLIAAG-----QKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp CSSSCCCEEECTTSSEEEEEC-----TTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred CCCccceEEECCCCCEEEEec-----CCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 666689999999999888764 24799999954 4543 23333332 345666776644
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-24 Score=185.40 Aligned_cols=212 Identities=18% Similarity=0.170 Sum_probs=152.8
Q ss_pred EEeeCCCCCCCcceeecccCCCc-cEEEEEeCCeEEEEECCCCc-----------ee---eeeeecCCCCCceEEEEcCC
Q 040533 34 ARILDAPNLRNDYYSNMMDWGRN-NILAIALGLELYLWKQENGE-----------VQ---KLLKVTGEDDFPTSISWSQD 98 (364)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~-----------~~---~~~~~~~~~~~v~~~~~s~~ 98 (364)
.++++.+........+.++++++ ++++++....+++|+..... .. ....+ .+...|.+++|+|+
T Consensus 25 vri~~~~~~~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spd 103 (434)
T 2oit_A 25 VRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCD 103 (434)
T ss_dssp EECSCCCSSCCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTT
T ss_pred EEecCCccccCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCC
Confidence 34444333222335788888874 46665555559998753210 00 00111 45678999999999
Q ss_pred CCEEE----EEecCCcEEEEecCCc--------ce---eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 99 AKTLA----VGYMASKLQLWDAETS--------KL---IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 99 ~~~l~----~~~~dg~i~iw~~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
+++|+ +|+.|+.|+|||+.++ +. ...+.+|...|.+++|+|.++++|++++.||+|++||++++.
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 99999 7788999999998765 21 345567899999999999448999999999999999999775
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-------cccceeEEEEccCCCcEEEe
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-------HRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~ 236 (364)
. .....+|...|.+++|+|+|++|++|+.||.|++||++ .. ....+.. |...|.+++|++++..+++.
T Consensus 184 ~-~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~---~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 184 K-VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ---EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp E-EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC---EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred c-eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc---ccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence 4 44455788999999999999999999999999999987 22 1233322 23479999999987555444
Q ss_pred ecCCCCC------eEEEEECCCC
Q 040533 237 GGGTQDG------CIKIWNVQKG 253 (364)
Q Consensus 237 ~~g~~d~------~i~i~d~~~~ 253 (364)
.. .+| .+++|++++.
T Consensus 259 ~~--~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 259 AA--ADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EE--TTCCSSSCCEEEEEECCCT
T ss_pred cc--CCCccCCCCceEEEEeccC
Confidence 43 332 4899999864
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-25 Score=188.05 Aligned_cols=242 Identities=10% Similarity=0.040 Sum_probs=185.2
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC-CcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeee
Q 040533 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD-KRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRI 169 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~ 169 (364)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+| +++.+ +++..++.|.+||+.+++. ...+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKN-TFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEE-EEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcE-EEEE
Confidence 45678888999999999999999999999888877443 2578899999 77755 5556789999999987664 3333
Q ss_pred ec-c-----cCcEEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC
Q 040533 170 NA-H-----TAEVCGLKWSNEGNLLASGGDD------------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 170 ~~-~-----~~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
.. + ...+..++|+|+|+++++++.+ +.|.+||+.+....+.+..+. +...+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc
Confidence 22 2 2236789999999999998865 899999987644333344443 334688999999997
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEEecCC------------------------------------------------
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------------------------------------------------ 263 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------------------------------------------ 263 (364)
+++.+ +.|.+||+.+++.+..+....
T Consensus 161 -l~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 161 -LYVAG-----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp -EEEES-----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred -EEEcc-----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 66632 339999999988777664331
Q ss_pred ---------------------CeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCC
Q 040533 264 ---------------------QICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 264 ---------------------~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
.+..++++| ++++++++ ++.|.+||+.+++.+..+... ..+.+++|+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~d 305 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--------LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKK 305 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--------ESEEEEEETTTTEEEEEEECS-SCCCEEEECSS
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--------cCeEEEEECccCeEEEEEcCC-CCccceEECCC
Confidence 234567778 88888876 789999999999887777543 35789999999
Q ss_pred CCEEEEEeCCCcEEEEEeeCCCCCcceecc
Q 040533 322 GLTVVSAAADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
|++|++++.++.|++||+.+++.+..+..+
T Consensus 306 g~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 999998888999999999988877766544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=209.33 Aligned_cols=268 Identities=12% Similarity=0.061 Sum_probs=189.7
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCC---cEEEEEeecCCCCEEEEeeCC---------CcEE
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK---RVATASWNHWNGHILTSGSQD---------KSII 155 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d---------g~i~ 155 (364)
..+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+| ++++|++++.+ +.+.
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEE
Confidence 34678999999998776 6899999999999988877776654 499999999 99999998764 7788
Q ss_pred EEEcccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccc--------------
Q 040533 156 NHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA-------------- 220 (364)
Q Consensus 156 ~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------------- 220 (364)
+||+.+++.. +.....|...+..++|||||+.|+.++. +.|++||+..+.. ......+...
T Consensus 95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~---~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHT
T ss_pred EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce---EEEecCCCCCceECcccceeEEEE
Confidence 9999877631 1122234445888999999999999886 7999999876533 3333332222
Q ss_pred ----eeEEEEccCCCcEEEeecC-------------------------------CCCCeEEEEECCCCeEEEEEec----
Q 040533 221 ----VKALAWCPYQFNVLASGGG-------------------------------TQDGCIKIWNVQKGTCIHSVDT---- 261 (364)
Q Consensus 221 ----v~~~~~~~~~~~~~~~~~g-------------------------------~~d~~i~i~d~~~~~~~~~~~~---- 261 (364)
+.+++|+|+|+.++.+... ..+..|++||+.+++....+..
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 3789999999776665420 0022899999998876555543
Q ss_pred ---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccce----eEEeecCCCCEEEE--EeCC
Q 040533 262 ---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRI----LELSQSPDGLTVVS--AAAD 331 (364)
Q Consensus 262 ---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i----~~i~~~~~~~~l~~--~~~d 331 (364)
...+..++|+|+|+.++.... ....+..|++||+.+++....+.. +...+ ..++|+|||+.|+. +..+
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLN--RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEE--TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred CCccceeEEEEEeCCCeEEEEEEc--CCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 345889999999998866532 113357899999999887666543 33333 37899999997775 4466
Q ss_pred C------cEEEEE-eeCCCC--CcceeccCCceee-eeeccC
Q 040533 332 E------TLRFWE-AFGPSG--SGDFVSHLDGLLS-LKVSPI 363 (364)
Q Consensus 332 g------~i~vw~-~~~~~~--~~~~~~~~~~v~~-~~~sp~ 363 (364)
+ .|++|| ...+.. ...+..+...+.. ++|||.
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd 370 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK 370 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC
Confidence 7 466666 333331 4455433444544 689985
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=207.94 Aligned_cols=303 Identities=10% Similarity=0.081 Sum_probs=207.3
Q ss_pred ecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCC---CceEEEEcCCCCEEEEEec---------CCcEEEEe
Q 040533 49 NMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDD---FPTSISWSQDAKTLAVGYM---------ASKLQLWD 115 (364)
Q Consensus 49 ~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------dg~i~iw~ 115 (364)
..+.|+|++ +++.+.++.|++||..+++...+.. +|.. .+.+++|||||++|++++. ++.|++||
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 357788865 5556678999999999998765543 2222 4899999999999999876 68999999
Q ss_pred cCCccee--eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE-----------------
Q 040533 116 AETSKLI--RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV----------------- 176 (364)
Q Consensus 116 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v----------------- 176 (364)
+.+++.+ ..+ ...+..++|+| +++.|+.+. ++.|++||+.++........++...+
T Consensus 97 ~~~g~~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 97 LSNGEFVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTTTEECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCCCccccceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 9988763 222 25688899999 999998885 78999999987664322223333322
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCCCC--cce---EEeccc
Q 040533 177 CGLKWSNEGNLLASGGDDN----------------------------------LVHVWDHSKMSSS--KCL---HRFRDH 217 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~--~~~---~~~~~~ 217 (364)
.+++|+|||+.|++++.|. .|++||+...... ..+ ..+.+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 4899999999999987552 7889998764310 001 123357
Q ss_pred ccceeEEEEccCCCcEEEeec--CCCCCeEEEEE----CCCCeEEEEE-----ecCCCeE-----EEEEcCCccceeeec
Q 040533 218 RAAVKALAWCPYQFNVLASGG--GTQDGCIKIWN----VQKGTCIHSV-----DTKAQIC-----GLEWNRHHKEILSGH 281 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d----~~~~~~~~~~-----~~~~~v~-----~~~~~~~~~~l~~~~ 281 (364)
...+..++|+|++ .++++.. +.....|.+|| ..+++....+ .+...+. .+.|+|+|+.++...
T Consensus 252 ~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 252 DYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp CEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred cceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 7789999999996 5665532 11224589999 8777654433 2234455 789999999776521
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC-----CcEEEEEeeC--CC-CCccee----
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD-----ETLRFWEAFG--PS-GSGDFV---- 349 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~vw~~~~--~~-~~~~~~---- 349 (364)
.. ......|++||+.+++ ...+..+...+..+.++ +++.|+..+.+ +..++|.+.. +. ....+.
T Consensus 331 ~~--~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~ 406 (719)
T 1z68_A 331 SD--KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLR 406 (719)
T ss_dssp EC--TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTT
T ss_pred Ec--cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccC
Confidence 10 0124468888887766 44555566667787777 88777766654 8899999875 21 112222
Q ss_pred ccCCceeeeeeccC
Q 040533 350 SHLDGLLSLKVSPI 363 (364)
Q Consensus 350 ~~~~~v~~~~~sp~ 363 (364)
+|...+..+.|||.
T Consensus 407 ~~~~~~~~~~~s~d 420 (719)
T 1z68_A 407 KERCQYYTASFSDY 420 (719)
T ss_dssp TTTBCBEEEEECGG
T ss_pred CCCCceEEEEECCC
Confidence 25567778888873
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-23 Score=176.31 Aligned_cols=273 Identities=10% Similarity=0.009 Sum_probs=185.4
Q ss_pred CeEEEEEC--CCCceeeeeeec-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecC-Ccceeeeeec-CCCcEEEEEeec
Q 040533 65 LELYLWKQ--ENGEVQKLLKVT-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE-TSKLIRNLEG-HDKRVATASWNH 139 (364)
Q Consensus 65 ~~i~iw~~--~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~-~~~~v~~~~~~~ 139 (364)
+.|++|++ .+++...+.... .....+..++|+|+|++|++++.+ .|.+|++. +++....... ..+....++|+|
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 56777664 566654443321 234578899999999999998877 99999997 7765543321 112355689999
Q ss_pred CCCCE--EEEee-------------CCCcEEEEEcccCcceeeeee----cccCcEEEEEEcCCCCEEEEEeC-CCeEEE
Q 040533 140 WNGHI--LTSGS-------------QDKSIINHDVRVSNNVTSRIN----AHTAEVCGLKWSNEGNLLASGGD-DNLVHV 199 (364)
Q Consensus 140 ~~~~~--l~~~~-------------~dg~i~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i 199 (364)
++++ +++++ .+|.+.+|++.....+...+. .+...+.+++|+|+|++++++.. ++.|++
T Consensus 93 -dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~ 171 (365)
T 1jof_A 93 -NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT 171 (365)
T ss_dssp -CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred -CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence 8884 55553 689999999974333332222 24567899999999998887764 679999
Q ss_pred EeCC-CCCCCcceEEec--ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC--CCeEE---EEEec---C----C-
Q 040533 200 WDHS-KMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ--KGTCI---HSVDT---K----A- 263 (364)
Q Consensus 200 wd~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~---~~~~~---~----~- 263 (364)
||+. +++. ..+..+. .+...+..++|+|+++.++++.. .++.|.+|++. +++.. ..+.. . .
T Consensus 172 ~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 172 HRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp EEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred EEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence 9987 3321 1222332 23456899999999987776654 57899999765 56543 22321 1 1
Q ss_pred ------CeEEEE-EcCCccceeeeccCCccCCCCeEEEeeCC-CCceee---eccccccceeEEeecC---CCCEEEEEe
Q 040533 264 ------QICGLE-WNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWG---ELQHQTSRILELSQSP---DGLTVVSAA 329 (364)
Q Consensus 264 ------~v~~~~-~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~---~~~~~~~~i~~i~~~~---~~~~l~~~~ 329 (364)
.+..++ |+|+|++|+++.........+.|.+|++. +++... ....+...+..++|+| ||++|++++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 478899 99999998876431000001289999986 555433 1333445577899999 899999998
Q ss_pred CC-CcEEEEEeeCC
Q 040533 330 AD-ETLRFWEAFGP 342 (364)
Q Consensus 330 ~d-g~i~vw~~~~~ 342 (364)
.+ +.|.+|++...
T Consensus 329 ~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCCeEEEEEEchh
Confidence 65 89999999875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=197.52 Aligned_cols=249 Identities=10% Similarity=0.012 Sum_probs=180.4
Q ss_pred CCCceEEEEcCCCCEEEEEec-CCcEEEEecCCcceeeeeecCC-CcEEEEEeecCCCCEEEEeeC---CCcEEEEEccc
Q 040533 87 DDFPTSISWSQDAKTLAVGYM-ASKLQLWDAETSKLIRNLEGHD-KRVATASWNHWNGHILTSGSQ---DKSIINHDVRV 161 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~ 161 (364)
..+|.+++|+|||++||+++. ||+++||++++++..+ +..+. ..+..++|+| + +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEec
Confidence 457999999999999999886 9999999997665544 44455 6899999999 6 77777765 45566766654
Q ss_pred --CcceeeeeecccCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 162 --SNNVTSRINAHTAEVCGLKWSNEGNL-LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 162 --~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
..... .+... ..+...+|+|+++. +++.+.++.+.+||+.++. ...+..+.. .+++|+|+|+.++.++
T Consensus 98 ~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~----~~~l~~~~~--~~~~~spDG~~la~~~- 168 (582)
T 3o4h_A 98 SRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG----LRELARLPG--FGFVSDIRGDLIAGLG- 168 (582)
T ss_dssp TSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE----EEEEEEESS--CEEEEEEETTEEEEEE-
T ss_pred cCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc----EEEeecCCC--ceEEECCCCCEEEEEE-
Confidence 33222 22222 23446678887752 3334444556699986543 223333333 8899999997666544
Q ss_pred CCCC----CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC--eEEEeeCCCCceeeeccccccc
Q 040533 239 GTQD----GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ--KLCLWKYPHMTKWGELQHQTSR 312 (364)
Q Consensus 239 g~~d----~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~ 312 (364)
.+ +.|++||+.+++......+...+..++|+|+|+.|+++.. ++ .|++||+.+++.. .+..|...
T Consensus 169 --~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~------~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 169 --FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLET------AREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp --EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEEC------SSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred --EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccC------CCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 34 7899999998887654445577899999999999995532 66 8999999998887 77778777
Q ss_pred eeEEe--------ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 313 ILELS--------QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 313 i~~i~--------~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
+..++ |+|||.++++++.||.+++|++ ++... .+.+.+.+++|+
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s 291 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW 291 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec
Confidence 77788 9999998999999999999999 44332 334667788877
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-23 Score=177.34 Aligned_cols=286 Identities=13% Similarity=0.074 Sum_probs=194.8
Q ss_pred eeecccCCCcc--EEEEEe-CC--eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGRNN--ILAIAL-GL--ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~-~~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+....+|+|++ ++.++. ++ .|++||+.+++..++.. ++...+..+.|+|||+.|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 37 YFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE--GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC--SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee--CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 44557899864 444444 45 59999999988765543 5555566788999999999999889999999999987
Q ss_pred eeeeecCCCcEEEEEe--ecCCCCEEEEe----------------------eCCCcEEEEEcccCcceeeeeecccCcEE
Q 040533 122 IRNLEGHDKRVATASW--NHWNGHILTSG----------------------SQDKSIINHDVRVSNNVTSRINAHTAEVC 177 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~--~~~~~~~l~~~----------------------~~dg~i~~~d~~~~~~~~~~~~~~~~~v~ 177 (364)
...+..+...+....| +| ++.+++.. ..+..|.+||+.+++ ...+..+...+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~ 191 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLG 191 (388)
T ss_dssp EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEE
T ss_pred eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCcccc
Confidence 7776666665544444 77 88887742 234679999998775 344445677789
Q ss_pred EEEEcC-CCCEEEEEeCC------CeEEEEeCCCCCCCcceEEecccc--cceeEEEEccCCCcEEEeec--CCCCCeEE
Q 040533 178 GLKWSN-EGNLLASGGDD------NLVHVWDHSKMSSSKCLHRFRDHR--AAVKALAWCPYQFNVLASGG--GTQDGCIK 246 (364)
Q Consensus 178 ~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~--g~~d~~i~ 246 (364)
.++|+| +|+.|+....+ ..|.++|..... ...+..+. ..+...+|+|+|+.++.... +..+..|+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIY 267 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEE
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEE
Confidence 999999 99988887753 378888865432 33333333 35778899999987766543 11123499
Q ss_pred EEECCCCeEEEEEecCCC------eEEEEEcCCccceeeeccCC---ccCCCCeEEEeeCCCCceeeecccccc------
Q 040533 247 IWNVQKGTCIHSVDTKAQ------ICGLEWNRHHKEILSGHGFS---SSGDGQKLCLWKYPHMTKWGELQHQTS------ 311 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~~~---~~~~~~~i~i~d~~~~~~~~~~~~~~~------ 311 (364)
+||+.+++.......... ...+.|+|+|+.++....-. ....+..|++||+.+++. ..+..+..
T Consensus 268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 346 (388)
T 3pe7_A 268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFE 346 (388)
T ss_dssp EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBT
T ss_pred EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccc
Confidence 999999875433222221 22347999999888542100 013367899999988665 44444544
Q ss_pred -----ceeEEeecCCCCEEEEEe-CCCcEEEEEeeCC
Q 040533 312 -----RILELSQSPDGLTVVSAA-ADETLRFWEAFGP 342 (364)
Q Consensus 312 -----~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~~ 342 (364)
.+..++|+|||+.|+.++ .+|...+|.+.-.
T Consensus 347 ~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 347 GDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp TBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred cccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 578899999999887665 5788888877643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-22 Score=172.40 Aligned_cols=248 Identities=8% Similarity=0.077 Sum_probs=173.3
Q ss_pred eecccCCCcc-EEEEEe---CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC-c--
Q 040533 48 SNMMDWGRNN-ILAIAL---GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET-S-- 119 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~-~-- 119 (364)
...++|+|++ +++++. ++.|++|++.+++...+..+..+...+..++|+|+|++|++++ .++.|.+|++.. +
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 4557888865 555554 4799999998877655555556677899999999999888887 678999999963 2
Q ss_pred ceeeeeec---------CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee--eeec-ccCcEEEEEEcCCCCE
Q 040533 120 KLIRNLEG---------HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS--RINA-HTAEVCGLKWSNEGNL 187 (364)
Q Consensus 120 ~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~ 187 (364)
+.+..+.. +...+.+++|+| +++++++...++.|.+|++.....+.. .... ....+..++|+|+|++
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~ 200 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY 200 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred eecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE
Confidence 22333321 123488999999 888777777788999999983332221 1122 2336788999999996
Q ss_pred EEE-EeCCCeEEEEeCCCCC-CCcceEEecccc------cceeEEEEccCCCcEEEeecCCCCCeEEEEECCC---CeEE
Q 040533 188 LAS-GGDDNLVHVWDHSKMS-SSKCLHRFRDHR------AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK---GTCI 256 (364)
Q Consensus 188 l~~-~~~d~~i~iwd~~~~~-~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~ 256 (364)
+++ ...++.|.+|++.... ....+..+.... ..+..++|+|+++.++++.. .++.|.+|++.. .+.+
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEEEe
Confidence 665 4568899999976421 111222222222 34788999999987877765 689999999973 2445
Q ss_pred EEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEe--eCCCCcee
Q 040533 257 HSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW--KYPHMTKW 303 (364)
Q Consensus 257 ~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~--d~~~~~~~ 303 (364)
..+.. ...+..++|+|+|++|+++.. .++.|.+| |..+++..
T Consensus 279 ~~~~~~~~~~~~~~~spdg~~l~v~~~-----~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 279 QQISTEGDFPRDFDLDPTEAFVVVVNQ-----NTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEECSSSCCCEEEECTTSSEEEEEET-----TTTEEEEEEECTTTCCEE
T ss_pred EEEecCCCCcCeEEECCCCCEEEEEEc-----CCCcEEEEEEeCCCCeEE
Confidence 55554 345889999999998887642 36899999 54555544
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-23 Score=174.74 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=184.2
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCC--cEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeee-cc---
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDK--RVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRIN-AH--- 172 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~-~~--- 172 (364)
+++++++.++.|.+||+.+++.+..+..... .+..++|+| +++.+ +++..++.|.+||+.+++. ...+. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCccc
Confidence 4788999999999999999998887763322 578899999 77654 5666788999999987764 33232 22
Q ss_pred -cCcEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 173 -TAEVCGLKWSNEGNLLASGG------------DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 173 -~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
...+..++|+|++++++++. .++.|.+||+.+. +.+..+.. ...+.+++|+|+++.++++
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~--- 152 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFEA-PRQITMLAWARDGSKLYGL--- 152 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSSCEEEE---
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC---cEEEEEeC-CCCcceeEECCCCCEEEEe---
Confidence 22567899999999988886 5799999998654 33444433 4567889999999777774
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC-----------------------eEEEee
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ-----------------------KLCLWK 296 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~-----------------------~i~i~d 296 (364)
++.|.+||+.+++....+........+.|+|++..++.... .++ .|.+||
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE-----SSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT-----TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeecc-----CCCceeeeeeccccccccccccccccceEEEe
Confidence 57899999999998888765542334588999998765431 122 579999
Q ss_pred CCCCcee-eeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 297 YPHMTKW-GELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 297 ~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+.+++.. ..+..+...+.+++|+|+|++|+++ ++.|.+||+.+++....+.. ...+.+++|+|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~d 290 (337)
T 1pby_B 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTD 290 (337)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTT
T ss_pred CCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCC
Confidence 9988765 2233455678899999999999988 79999999988776665543 456789999985
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=181.35 Aligned_cols=218 Identities=13% Similarity=0.128 Sum_probs=159.6
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc----------eee-----eeecCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK----------LIR-----NLEGHD 129 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~----------~~~-----~~~~~~ 129 (364)
+.+++|+.... .....+..+++++++.++++++.++ ++||+..... ... ....+.
T Consensus 23 ~~vri~~~~~~---------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (434)
T 2oit_A 23 KKVRIFDSPEE---------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK 92 (434)
T ss_dssp CEEECSCCCSS---------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred eeEEecCCccc---------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC
Confidence 57888764311 1234578999999999999998887 8998753210 011 011256
Q ss_pred CcEEEEEeecCCCCEEE----EeeCCCcEEEEEcccC-----cc-----eeeeeecccCcEEEEEEcCC-CCEEEEEeCC
Q 040533 130 KRVATASWNHWNGHILT----SGSQDKSIINHDVRVS-----NN-----VTSRINAHTAEVCGLKWSNE-GNLLASGGDD 194 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~----~~~~dg~i~~~d~~~~-----~~-----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 194 (364)
..|.+++|+| ++++|+ +|+.|+.|++||+.+. +. ....+.+|...|.+++|+|+ +.+|++++.|
T Consensus 93 ~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 93 FPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 6799999999 899999 7889999999999764 11 13455679999999999997 7899999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CCeE
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQIC 266 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~v~ 266 (364)
|+|++||++.. ..+....+|...|.+++|+|++.. +++++ .||.|++||++ ++....+..+ ..+.
T Consensus 172 g~v~iwD~~~~---~~~~~~~~~~~~v~~v~wspdg~~-lasgs--~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 172 GSIAVLQVTET---VKVCATLPSTVAVTSVCWSPKGKQ-LAVGK--QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp SCEEEEEESSS---EEEEEEECGGGCEEEEEECTTSSC-EEEEE--TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred CeEEEEEcCCC---cceeeccCCCCceeEEEEcCCCCE-EEEEc--CCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 99999998865 334555668889999999999855 55554 79999999998 5555555332 2689
Q ss_pred EEEEcCCccceeeeccCC-ccCCCCeEEEeeCCCC
Q 040533 267 GLEWNRHHKEILSGHGFS-SSGDGQKLCLWKYPHM 300 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~-~~~~~~~i~i~d~~~~ 300 (364)
+++|++++.++++..... .......+++|++...
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999999888876543110 0011235999999764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-23 Score=188.39 Aligned_cols=262 Identities=11% Similarity=0.069 Sum_probs=183.9
Q ss_pred eecccCCCcc--EEEEEe-CCeEEEEECCCCceeeeeeecCCC-CCceEEEEcCCCCEEEEEec---CCcEEEEecCC--
Q 040533 48 SNMMDWGRNN--ILAIAL-GLELYLWKQENGEVQKLLKVTGED-DFPTSISWSQDAKTLAVGYM---ASKLQLWDAET-- 118 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~-~~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~-- 118 (364)
+.++++++++ ++.++. ++.+.||++.+++..++. .|. ..+..++|+|| +++++++. +....+|.+..
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt---~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC---SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee---cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 6677777763 444554 899999999777654333 444 68999999999 77777664 45556655433
Q ss_pred -cceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC--
Q 040533 119 -SKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-- 194 (364)
Q Consensus 119 -~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 194 (364)
+... .+... ..+...+|+| +++ .+++.+.++.+.+||+.+++. .. +..+.. .+++|+|||++|++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~-~~-l~~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGL-RE-LARLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEE-EE-EEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred CCccc-cccCC-CCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcE-EE-eecCCC--ceEEECCCCCEEEEEEEcCC
Confidence 2222 33322 2345678888 654 444444555566999987653 22 323333 789999999999988877
Q ss_pred --CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCeEEEEEec-CCCeEEEE
Q 040533 195 --NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGTCIHSVDT-KAQICGLE 269 (364)
Q Consensus 195 --~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~-~~~v~~~~ 269 (364)
+.|++||+..+. ...+..+...+..++|+|||+.++ ++. .++ .|++||+.+++.. .+.. ...+..+.
T Consensus 173 ~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 173 GRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSVE-DLELPSKDFSSYR 244 (582)
T ss_dssp TEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred CCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence 789999987653 346677888899999999997666 443 577 8999999998877 4433 34455566
Q ss_pred --------EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCc---EEEEE
Q 040533 270 --------WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET---LRFWE 338 (364)
Q Consensus 270 --------~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~---i~vw~ 338 (364)
|+|+|..++++.. ++.+++|++ ++... .+.+.+.+++|+ +++++++++.+.. +.+|+
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~------~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARR------EGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEE------TTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred hccccceeEcCCCcEEEEEEc------CCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999966666644 899999999 55544 234678899999 9999998887754 66666
Q ss_pred ee
Q 040533 339 AF 340 (364)
Q Consensus 339 ~~ 340 (364)
..
T Consensus 313 ~~ 314 (582)
T 3o4h_A 313 SG 314 (582)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-21 Score=167.85 Aligned_cols=238 Identities=8% Similarity=0.043 Sum_probs=175.3
Q ss_pred cCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeecC
Q 040533 52 DWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 52 ~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
++++++ +++.+.++.|++||..+++....... +....+..++|+|++++++ ++..++.|.+||+.+++....+...
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 444443 55566789999999999887655543 2223578999999998665 4456889999999999888776633
Q ss_pred C------CcEEEEEeecCCCCEEEEeeCC------------CcEEEEEcccCcce--eeeeecccCcEEEEEEcCCCCEE
Q 040533 129 D------KRVATASWNHWNGHILTSGSQD------------KSIINHDVRVSNNV--TSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 129 ~------~~v~~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
. ..+..++|+| ++++|++++.+ +.|.+||+.+++.. .... .+...+.+++|+|+++ +
T Consensus 85 ~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-E
T ss_pred cccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-E
Confidence 2 2377899999 99999888865 89999999875421 2222 2344688999999999 5
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEeccc---------------------------------------------------
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDH--------------------------------------------------- 217 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------------------------------------------- 217 (364)
++++. .|.+||+.+.+. +..+..+
T Consensus 162 ~~~~~--~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKY---TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp EEESS--SEEEECTTTCCE---EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred EEccC--cEEEEeCCCCce---eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 55543 499999876432 2222111
Q ss_pred -----------------ccceeEEEEcc-CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 218 -----------------RAAVKALAWCP-YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 218 -----------------~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
...+..++|+| +++.++++ ++.|.+||+.+++.+..+.....+..++|+|+++++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEE
Confidence 11345677889 88665553 68999999999999888887777889999999999888
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
+.. ++.|.+||..+++.+..+..+
T Consensus 312 ~~~------~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 312 GGT------FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ESB------SSEEEEEETTTTEEEEEEECS
T ss_pred ecC------CCeEEEEeccccceeeeeecC
Confidence 643 799999999999888776544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-22 Score=186.33 Aligned_cols=277 Identities=13% Similarity=0.124 Sum_probs=188.8
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCC-----CceEEEEcCCCCEEEEEecC---------CcEEE
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDD-----FPTSISWSQDAKTLAVGYMA---------SKLQL 113 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~d---------g~i~i 113 (364)
...+.|+|++.+.++.|+.|++||+.+++...++. +|.. ....++|||||++|+.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCCceEEEEe--chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 34688999764444349999999999998755543 4432 23458999999999998875 56789
Q ss_pred EecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE-----------------
Q 040533 114 WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV----------------- 176 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v----------------- 176 (364)
||+.+++.. .+..+...+...+||| +++.|+.+. ++.|++|++.++........++...+
T Consensus 97 ~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 97 YDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 999998754 4566778899999999 999998874 68999999987664332233333322
Q ss_pred EEEEEcCCCCEEEEEeCCC-eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC---
Q 040533 177 CGLKWSNEGNLLASGGDDN-LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--- 252 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--- 252 (364)
..+.|||||+.|+.++.|. .+.+|++....... .+...+..+.+.+.|.. .....|++||+.+
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~------~~~~~~~~~~yp~~G~~-------~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES------LQYPKTVRVPYPKAGAV-------NPTVKFFVVNTDSLSS 240 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT------CSSCEEEEEECCBTTSC-------CCEEEEEEEETTSCCS
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCC------CCCCcceeecCCCCcCc-------CCeeEEEEEECCCCCC
Confidence 3489999999999887554 48888753221111 23445566777766632 1345799999998
Q ss_pred Ce--EEEEEe-------cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc----ee--eec--ccccccee-
Q 040533 253 GT--CIHSVD-------TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT----KW--GEL--QHQTSRIL- 314 (364)
Q Consensus 253 ~~--~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~----~~--~~~--~~~~~~i~- 314 (364)
++ ....+. +...+..++|+|+|+.++.... ..+.+..|.+||+.+++ +. ..+ ..|...+.
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~--r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~ 318 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR--RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE--SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC--CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence 73 223333 3345889999999996655422 12335679999999887 22 222 34555544
Q ss_pred ----EEeecCCCCEEE-EEeC-CC--cEEEEEeeCCCC
Q 040533 315 ----ELSQSPDGLTVV-SAAA-DE--TLRFWEAFGPSG 344 (364)
Q Consensus 315 ----~i~~~~~~~~l~-~~~~-dg--~i~vw~~~~~~~ 344 (364)
.+.|+|||+.|+ ..+. +| .|++|++.+++.
T Consensus 319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 789999999877 6653 44 477778766544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-20 Score=162.10 Aligned_cols=261 Identities=10% Similarity=0.052 Sum_probs=176.9
Q ss_pred eecccCCCcc--EEEEEeC----CeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC
Q 040533 48 SNMMDWGRNN--ILAIALG----LELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET 118 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~----~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~ 118 (364)
...++|+|++ +++++.+ +.|.+|++.. ++...+.....+...+..+++ ++++|++++ .++.|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 4567888864 4445543 7999998765 565555555555667788888 888777776 578999999975
Q ss_pred cceeeee------ec--------CCCcEEEEEeecCCCCEEEEee-CCCcEEEEEcccCcc------e------eeeeec
Q 040533 119 SKLIRNL------EG--------HDKRVATASWNHWNGHILTSGS-QDKSIINHDVRVSNN------V------TSRINA 171 (364)
Q Consensus 119 ~~~~~~~------~~--------~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~------~------~~~~~~ 171 (364)
...+..+ .+ +...+.+++|+| +++++++++ .++.|.+|++..... + ......
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA 208 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC
Confidence 4333221 11 123468899999 888665554 578999999875442 1 111223
Q ss_pred ccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEec---ccccceeEEEEccCCCcEEEeecCCC-CCeEE
Q 040533 172 HTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFR---DHRAAVKALAWCPYQFNVLASGGGTQ-DGCIK 246 (364)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~-d~~i~ 246 (364)
+...+..++|+|+|+++++++ .++.|.+||+..... ..+..+. .+......++|+|+++.++++.. . ++.|.
T Consensus 209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~ 285 (361)
T 3scy_A 209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVA 285 (361)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEE
T ss_pred CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEE
Confidence 445678999999999887777 689999999874321 1222222 22344679999999987777664 4 68999
Q ss_pred EEECC--CCe--EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEe--eCCCCceeeec-cccccceeEEeec
Q 040533 247 IWNVQ--KGT--CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW--KYPHMTKWGEL-QHQTSRILELSQS 319 (364)
Q Consensus 247 i~d~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~--d~~~~~~~~~~-~~~~~~i~~i~~~ 319 (364)
+|++. +++ .+..+.....+..++|+|+|++|+++. ..++.|.+| |..+++..... ..+...+.|+.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~-----~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC-----RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE-----TTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE-----CCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99985 444 444455555688999999999888875 237889996 44566655443 2244567888875
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-20 Score=155.84 Aligned_cols=249 Identities=8% Similarity=0.106 Sum_probs=188.4
Q ss_pred CCCceEEEEcCCCCEEEEEecC------------------------CcEEEEecCCcceeeeee-cCCCcEEEEEeecCC
Q 040533 87 DDFPTSISWSQDAKTLAVGYMA------------------------SKLQLWDAETSKLIRNLE-GHDKRVATASWNHWN 141 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 141 (364)
-..+.+++++|+|+++++...+ +.|.+||..+++....+. .+-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568889999999888877766 479999999898876654 3445789999999 8
Q ss_pred CCEEEEeeCCCcEEEEEcccCcceeeee---------ecccCcEEEEEEcC-CCCEEEEEe-CCCeEEEEeCCCCCCCcc
Q 040533 142 GHILTSGSQDKSIINHDVRVSNNVTSRI---------NAHTAEVCGLKWSN-EGNLLASGG-DDNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 142 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~ 210 (364)
++++++...++.|++||.......+..+ ..+......++++| ++.++++.+ .++.|++||.. + ..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g---~~ 177 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G---KF 177 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S---CE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C---CE
Confidence 9988888889999999986442223333 23445689999999 788888776 68999999943 2 33
Q ss_pred eEEecc----------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccce
Q 040533 211 LHRFRD----------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEI 277 (364)
Q Consensus 211 ~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l 277 (364)
+..+.. +-.....++++|++..++++.. .++.|++||..+++.+..+.. ...+..++++| +..+
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~ 254 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLF 254 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEE
Confidence 444432 2234789999999557888765 789999999998998888853 35688999999 3332
Q ss_pred ee-eccCCccCCCCeEEEeeCCCCceeeecc---ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 278 LS-GHGFSSSGDGQKLCLWKYPHMTKWGELQ---HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 278 ~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.. +..+.+...+..|++|+..+++.+..+. .+...+..++++|+|.++++...++.|++|++....
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 22 2223334557799999999999988873 566778999999999888888899999999987643
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=172.67 Aligned_cols=284 Identities=10% Similarity=-0.009 Sum_probs=189.4
Q ss_pred EECCCCceeeeeeecCCCCCceE-----EEEcCCCCEEEEEec-CC--cEEEEecCCcceeeeeecCCCcEEEEEeecCC
Q 040533 70 WKQENGEVQKLLKVTGEDDFPTS-----ISWSQDAKTLAVGYM-AS--KLQLWDAETSKLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 70 w~~~~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
++..++.... .+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+..+.|+| +
T Consensus 15 ~~~~~g~~~~--~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-d 91 (388)
T 3pe7_A 15 QDASTGAQVT--RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-D 91 (388)
T ss_dssp ECTTTCCEEE--ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-T
T ss_pred ecCCCCcceE--EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-C
Confidence 4555555433 33345444444 789999999999887 66 488889998887777666666665778999 9
Q ss_pred CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE--EcCCCCEEEEE----------------------eCCCeE
Q 040533 142 GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK--WSNEGNLLASG----------------------GDDNLV 197 (364)
Q Consensus 142 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~d~~i 197 (364)
++.|+.++.++.|++||+.+++. ......+...+.... ++|++++++.. ..+..|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 99999999999999999997764 333444545444333 48999888742 245789
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEcc-CCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecC--CCeEEEEEc
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTK--AQICGLEWN 271 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~ 271 (364)
.+||+.++. ...+..+...+..+.|+| +++.++.+..+.. ...|.++|...++........ ..+..+.|+
T Consensus 171 ~~~d~~~g~----~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 171 MRVDLKTGE----STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEETTTCC----EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred EEEECCCCc----eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 999987653 344445667789999999 9876666543111 347888898766544333333 247788999
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCcee--eeccccccc---eeEEeecCCCCEEEEE---------eCCCcEEEE
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW--GELQHQTSR---ILELSQSPDGLTVVSA---------AADETLRFW 337 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~---i~~i~~~~~~~~l~~~---------~~dg~i~vw 337 (364)
|+|+.|+..... .+..+..|++||+.+++.. ..+..+... ...+.|+|||+.|+.. ..+..|++|
T Consensus 247 pdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 247 PDGSALVYVSYL-KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp TTSSCEEEEEEE-TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CCCCEEEEEecC-CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 999988654321 0111235999999988743 233321111 2234799999988754 456689999
Q ss_pred EeeCCCCCcceeccCC-----------ceeeeeeccC
Q 040533 338 EAFGPSGSGDFVSHLD-----------GLLSLKVSPI 363 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~-----------~v~~~~~sp~ 363 (364)
|+.+++. ..+..+.. .+.+++|||.
T Consensus 326 d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spD 361 (388)
T 3pe7_A 326 NMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPD 361 (388)
T ss_dssp ETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred eccCCce-EEeccccCcccccccccccCCCCccCCCC
Confidence 9987654 44555555 5788899985
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=164.18 Aligned_cols=283 Identities=12% Similarity=0.043 Sum_probs=186.3
Q ss_pred eeecccCCCcc-EEEEEeC----CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGRNN-ILAIALG----LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+...++|+|++ .++...+ ..|++||+.+++...+.. ++......+.|+|||++|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC--SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec--CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 35677899864 4444332 379999999887644432 2222233478999999999999888999999998876
Q ss_pred eeeeecCCCcEEE-------------------EEeecCCCCEEEEe-----eCCCcEEEEEcccCcceeeeeecccCcEE
Q 040533 122 IRNLEGHDKRVAT-------------------ASWNHWNGHILTSG-----SQDKSIINHDVRVSNNVTSRINAHTAEVC 177 (364)
Q Consensus 122 ~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i~~~d~~~~~~~~~~~~~~~~~v~ 177 (364)
......+...... +.|+| +++.++.. ..+..|.+||+.+++. ..+..+...+.
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~ 191 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWLG 191 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCEE
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCcccc
Confidence 6555544432222 34566 66655544 3556899999987653 23335667889
Q ss_pred EEEEcC-CCCEEEEEeCC------CeEEEEeCCCCCCCcceEEeccc--ccceeEEEEccCCCcEEEeec--CCCCCeEE
Q 040533 178 GLKWSN-EGNLLASGGDD------NLVHVWDHSKMSSSKCLHRFRDH--RAAVKALAWCPYQFNVLASGG--GTQDGCIK 246 (364)
Q Consensus 178 ~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~ 246 (364)
.+.|+| ++..|+..+.+ ..|.+||+.... ...+..+ ...+..++|+|+++.+++... +..++.|+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 999999 78877766543 368888875432 2222222 235788999999987766542 11125599
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcC-CccceeeeccC----------CccCCCCeEEEeeCCCCceeeecccccc----
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNR-HHKEILSGHGF----------SSSGDGQKLCLWKYPHMTKWGELQHQTS---- 311 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~----------~~~~~~~~i~i~d~~~~~~~~~~~~~~~---- 311 (364)
+||+.+++......... .. +.|+| +|+.++.+..- .....+..|++||+.+++.. .+..+..
T Consensus 268 ~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~ 344 (396)
T 3c5m_A 268 KANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDV 344 (396)
T ss_dssp EECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCC
T ss_pred EEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcccc
Confidence 99999887654433332 33 89999 99987764310 00013578999999877643 3444433
Q ss_pred -------ceeEEeecCCCCEEEEEeC-CCcEEEEEeeC
Q 040533 312 -------RILELSQSPDGLTVVSAAA-DETLRFWEAFG 341 (364)
Q Consensus 312 -------~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~ 341 (364)
.+..++|+|+|+.|+.++. ++...+|.+.-
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 2567899999998877764 56666776653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-21 Score=163.11 Aligned_cols=283 Identities=8% Similarity=0.027 Sum_probs=199.4
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----------CCcEEEEecCCcceeeeeecC-----
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----------ASKLQLWDAETSKLIRNLEGH----- 128 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~----- 128 (364)
|+.|++||..+++..... ..+..+ .++|+|||++++++.. ++.|.+||..+++.+..+...
T Consensus 30 d~~v~v~D~~t~~~~~~i--~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMV--PTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEETTTCCEEEEE--ECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred cCeEEEEECCCCeEEEEe--cCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 679999999998875443 344433 8999999999998863 567999999999888877643
Q ss_pred -CCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeee-eecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 040533 129 -DKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSR-INAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 129 -~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~ 203 (364)
......++++| ++++|+++.. ++.|.+||+.+.+. ... +. ... ...+.+.|++ ..+++.+.||.+.+|++.
T Consensus 106 ~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 106 GLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp BCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred cCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 23466789999 9999988864 57999999987753 333 32 222 2335567765 677888899999999875
Q ss_pred CCCCCcceE------EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEecC-----------CC
Q 040533 204 KMSSSKCLH------RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVDTK-----------AQ 264 (364)
Q Consensus 204 ~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~-----------~~ 264 (364)
... +... .+.....++ .+.+.+++..++... .++.+.++|+.... ....+... ..
T Consensus 182 ~~g--~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 182 EDG--KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp TTS--SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred CCC--cEeeeccccceEcCCCCce-EEEecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 422 1121 111112221 233456665555543 58899999997543 22222211 11
Q ss_pred eEEEEEcCCccceeeeccCCc-----cCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 265 ICGLEWNRHHKEILSGHGFSS-----SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~-----~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
...++++|+++.+++...... ....+.|.+||+.+++.+.++..+. +.+++|+|||++|++++. +.|.+||.
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 123789999888876532100 0114589999999999999998776 899999999999999887 99999999
Q ss_pred eCC--CCCcceeccCCceeeeeeccC
Q 040533 340 FGP--SGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 340 ~~~--~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.++ +.+..+..+......++++|.
T Consensus 333 ~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 333 SQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp SSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred CCCcceeeEEeccCCCCcEEEEecCC
Confidence 998 777776667778899999985
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=181.19 Aligned_cols=289 Identities=9% Similarity=0.065 Sum_probs=188.5
Q ss_pred eecccCCCcc-EEEEE-e---------CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 48 SNMMDWGRNN-ILAIA-L---------GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~---------~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
+..++|||++ .++.+ . ++.|++||+.+++......+ ...+.+++|||||+.||++. ++.|++|++
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 5678899974 44443 3 58999999999876211222 24688999999999999985 789999999
Q ss_pred CCcceeeee-ecCCCcE-----------------EEEEeecCCCCEEEEeeCCC--------------------------
Q 040533 117 ETSKLIRNL-EGHDKRV-----------------ATASWNHWNGHILTSGSQDK-------------------------- 152 (364)
Q Consensus 117 ~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg-------------------------- 152 (364)
.+++..... .++...| .+++|+| +++.|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 888765433 2222222 4899999 999999887652
Q ss_pred --------cEEEEEcccCcce--e-----eeeecccCcEEEEEEcCCCCEEEEEeCC----CeEEEEe----CCCCCCCc
Q 040533 153 --------SIINHDVRVSNNV--T-----SRINAHTAEVCGLKWSNEGNLLASGGDD----NLVHVWD----HSKMSSSK 209 (364)
Q Consensus 153 --------~i~~~d~~~~~~~--~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~~ 209 (364)
.|++||+.++... . ..+..|...+..++|+||++++++.... ..|.+|| +.++....
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7889999866531 1 1133577889999999998777764432 2488899 66543322
Q ss_pred ceE-Eeccccccee-----EEEEccCCCcEEEe-ecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeec
Q 040533 210 CLH-RFRDHRAAVK-----ALAWCPYQFNVLAS-GGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 210 ~~~-~~~~~~~~v~-----~~~~~~~~~~~~~~-~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 281 (364)
... ....|...+. .+.|+|+|+.++.. ........|.+||+.+++. ..+. ....+..+.++ +++.++...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~ 374 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSS 374 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEE
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEE
Confidence 221 0134566666 88999999876653 3211234688888877763 3333 33457777777 777776553
Q ss_pred cCCccCCCCeEEEeeCCC--Cc-eeeecc----ccccceeEEeecCCCCEEEE-EeCC--CcEEEEEeeCCCC
Q 040533 282 GFSSSGDGQKLCLWKYPH--MT-KWGELQ----HQTSRILELSQSPDGLTVVS-AAAD--ETLRFWEAFGPSG 344 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~--~~-~~~~~~----~~~~~i~~i~~~~~~~~l~~-~~~d--g~i~vw~~~~~~~ 344 (364)
... ...++...+|.+.. +. ....+. +|...+..+.|+|++++++. ++.+ ..+.+||+.+++.
T Consensus 375 ~~~-~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 375 NEF-EEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp SCG-GGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred ecC-CCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 200 01146677777653 32 123332 25567888999999987764 3333 4688898877654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-19 Score=147.31 Aligned_cols=241 Identities=13% Similarity=0.224 Sum_probs=176.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec------CCCcEEEEEeecCCCCEEEEeeC-CCcEEEE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG------HDKRVATASWNHWNGHILTSGSQ-DKSIINH 157 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~ 157 (364)
++-..+.+++++++++++++...++.|.+||.+ ++.+..+.. +...+..+++.+.+++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 665555532 33568899995426776666643 7899999
Q ss_pred EcccCcceeeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec--ccccceeEEEEccCCCcEE
Q 040533 158 DVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 158 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~ 234 (364)
|. +++. ...+. .+...+.+++++++++++++...++.|.+||... +.+..+. .+...+..++++|++. ++
T Consensus 106 d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~p~~i~~~~~g~-l~ 178 (286)
T 1q7f_A 106 NQ-YGQF-VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQE-IF 178 (286)
T ss_dssp CT-TSCE-EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSEEEEEECSSSE-EE
T ss_pred CC-CCcE-EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC----CEEEEeCCCCccCCcEEEEECCCCC-EE
Confidence 94 3443 33332 3445789999999999888877889999999542 2344432 3345688999999984 66
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCccCCCC-eEEEeeCCCCceeeeccccc
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSGDGQ-KLCLWKYPHMTKWGELQHQT 310 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~ 310 (364)
++.. .++.|++||. +++.+..+... ..+..++++++|.++++... ++ .|.+|+. +++.+..+..+.
T Consensus 179 v~~~--~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 179 ISDN--RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNH------NNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp EEEG--GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS------SSCEEEEECT-TSCEEEEEEESS
T ss_pred EEEC--CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC------CCEEEEEECC-CCCEEEEEcccC
Confidence 6654 6899999997 45666666543 46889999999987777642 54 9999995 566666665543
Q ss_pred --cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 311 --SRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 311 --~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
..+.+++++|+|+++++ +.|+.|++|++.....
T Consensus 249 ~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 24779999999987776 6799999999865443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-20 Score=171.67 Aligned_cols=282 Identities=8% Similarity=-0.024 Sum_probs=184.9
Q ss_pred eeecccCCCccEEEEEe----CCeEEEEECCCCceeeeeeecCCCCCce---------EEEEc--CCCCE-EEEEec-CC
Q 040533 47 YSNMMDWGRNNILAIAL----GLELYLWKQENGEVQKLLKVTGEDDFPT---------SISWS--QDAKT-LAVGYM-AS 109 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~~~~~-dg 109 (364)
.+..++++++.++.+.. ++...||....+.. ...+..+...+. ...|+ |||+. |+.++. +.
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~ 102 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ 102 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence 46667778877655544 67888998543322 223335555555 56665 99998 777653 45
Q ss_pred cEEEEecC--Ccceeeeeec-----CCCcEEEEEeecCCCCEEEEeeCC----------CcEEEEEcccC-----cceee
Q 040533 110 KLQLWDAE--TSKLIRNLEG-----HDKRVATASWNHWNGHILTSGSQD----------KSIINHDVRVS-----NNVTS 167 (364)
Q Consensus 110 ~i~iw~~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~~~d~~~~-----~~~~~ 167 (364)
.|.++++. .......+.. |...+..++|+| +++.|++++.+ ..|++||+.+. .. ..
T Consensus 103 ~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~ 180 (662)
T 3azo_A 103 RLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VR 180 (662)
T ss_dssp CEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SE
T ss_pred eEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-ee
Confidence 67777765 2033445554 567889999999 99999988876 58999999862 22 33
Q ss_pred eee-cccCcEEEEEEcCCCCEEEEEeCC--------CeEEEEeCC-CCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 168 RIN-AHTAEVCGLKWSNEGNLLASGGDD--------NLVHVWDHS-KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 168 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
.+. .+...+..++|+|||++|+.++.+ ..|++||+. ++...+.......+...+..+.|+|+|+ +++++
T Consensus 181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~ 259 (662)
T 3azo_A 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVAT 259 (662)
T ss_dssp ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEE
T ss_pred EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEE
Confidence 444 555678889999999999987754 379999987 3311122233334467899999999997 66665
Q ss_pred cCCCCC--eEEEEECCCCeEEEEEecCCC---------eEEEEEcCCccceeeeccCCccCCCCeEEEe--eCCCCceee
Q 040533 238 GGTQDG--CIKIWNVQKGTCIHSVDTKAQ---------ICGLEWNRHHKEILSGHGFSSSGDGQKLCLW--KYPHMTKWG 304 (364)
Q Consensus 238 ~g~~d~--~i~i~d~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~--d~~~~~~~~ 304 (364)
. .++ .|.+||+.+++.......+.. +..++|+|+++.++++. . +.+++| |..+++ +.
T Consensus 260 ~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~------~-~~~~l~~~d~~~~~-~~ 329 (662)
T 3azo_A 260 D--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG------K-GAAVLGILDPESGE-LV 329 (662)
T ss_dssp C--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB------S-SSCEEEEEETTTTE-EE
T ss_pred C--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE------c-CccEEEEEECCCCc-EE
Confidence 4 667 677778767765544333222 45788889998887763 3 666666 655554 66
Q ss_pred eccccccceeEE-eecCCCCEEEEEeCCCcEEEE--EeeCCC
Q 040533 305 ELQHQTSRILEL-SQSPDGLTVVSAAADETLRFW--EAFGPS 343 (364)
Q Consensus 305 ~~~~~~~~i~~i-~~~~~~~~l~~~~~dg~i~vw--~~~~~~ 343 (364)
.+..|...+..+ +++++.-++++++.+....+| |+.+++
T Consensus 330 ~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 330 DAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp ECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 777777777777 554443344455656555555 444544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-18 Score=147.27 Aligned_cols=264 Identities=9% Similarity=0.076 Sum_probs=183.8
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.++.|+++. ++.++.++.+..|. ++. ...+..+...+.+++|+|++++++++..++.|.+||.++++.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AEP--WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CEE--EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cceeeecCCccceeEEeecccCcccc---cce--eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 5566777753 44446677888882 222 2334466677899999999998888888899999999888766554
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCC----CcEEEEEcccCcceeeeee--cccCcEEEEEEcCCCCEEEEEeC------
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQD----KSIINHDVRVSNNVTSRIN--AHTAEVCGLKWSNEGNLLASGGD------ 193 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------ 193 (364)
..+...+.+++++| +++++++...+ +.|.+||..++.. ...+. .+...+..++++|+++++++...
T Consensus 83 ~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 83 VSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp ECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEE-EEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 45667899999999 88888877666 6899999876653 21221 23457899999999987776653
Q ss_pred CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEE------e--cCCC
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSV------D--TKAQ 264 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~------~--~~~~ 264 (364)
.+.|..+|..... ...+......+..++|+|+++.++++.. .++.|.+||+.+ +.....+ . ....
T Consensus 161 ~~~l~~~~~~~~~----~~~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 161 LGGVYYVSPDFRT----VTPIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp CEEEEEECTTSCC----EEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred CceEEEEeCCCCE----EEEeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCCCC
Confidence 3556666654321 2223233445788999999976777654 578999999964 3322111 1 1235
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc------ceeEEeecCCCCEEEEEeCC
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS------RILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~~~~~d 331 (364)
+..++++++|.+.++... ++.|.+||. +++.+..+..+.. .+.+++|+|+++.|+.++.+
T Consensus 235 ~~~i~~d~~G~l~v~~~~------~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYG------QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEEBTTCCEEEEEET------TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCceEECCCCCEEEEEcC------CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 788999999987776543 689999998 5666666654432 68999999998777766555
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=167.48 Aligned_cols=270 Identities=10% Similarity=-0.019 Sum_probs=184.8
Q ss_pred ecCCCCCceEEEEcCCCCEEEEE--ecCCcEEEEecCCcceeeeeecCCCcEE---------EEEee--cCCCCE-EEEe
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVG--YMASKLQLWDAETSKLIRNLEGHDKRVA---------TASWN--HWNGHI-LTSG 148 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~-l~~~ 148 (364)
+.+|...+..++|++++-+++.. ..++...||....+.....+..+...+. ...|+ | +++. |+.+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec-CCCeEEEEE
Confidence 34688899999999876666666 4578899998655555666666766665 56666 8 7777 6655
Q ss_pred e-CCCcEEEEEcc--c-Ccceeeeeec-----ccCcEEEEEEcCCCCEEEEEeCC----------CeEEEEeCCCCC--C
Q 040533 149 S-QDKSIINHDVR--V-SNNVTSRINA-----HTAEVCGLKWSNEGNLLASGGDD----------NLVHVWDHSKMS--S 207 (364)
Q Consensus 149 ~-~dg~i~~~d~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~--~ 207 (364)
+ .+..|.++++. . +. ...+.. |...+..++|+|||+.|++++.+ ..|++||+.... .
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 4 35667777765 2 32 333334 56778999999999999998876 589999987610 0
Q ss_pred CcceEEec-ccccceeEEEEccCCCcEEEeecCC-----CCCeEEEEECC-CC---eEEEEEec-CCCeEEEEEcCCccc
Q 040533 208 SKCLHRFR-DHRAAVKALAWCPYQFNVLASGGGT-----QDGCIKIWNVQ-KG---TCIHSVDT-KAQICGLEWNRHHKE 276 (364)
Q Consensus 208 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~-~~---~~~~~~~~-~~~v~~~~~~~~~~~ 276 (364)
......+. .+...+..++|+|+|+.++.+.... ....|.+||+. ++ +....... ...+..+.|+|+|++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 01234444 5566788899999998776655300 01479999998 56 44444443 467899999999996
Q ss_pred eeeeccCCccCCCC--eEEEeeCCCCceeeeccccccc--------eeEEeecCCCCEEEEEeCCCcEEEEEeeCC-CCC
Q 040533 277 ILSGHGFSSSGDGQ--KLCLWKYPHMTKWGELQHQTSR--------ILELSQSPDGLTVVSAAADETLRFWEAFGP-SGS 345 (364)
Q Consensus 277 l~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~--------i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~ 345 (364)
++++.. ++ .|++||..+++.......+... +..++|+|+++++++++. +.+++|.+... ...
T Consensus 256 ~~~~~~------~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 256 IVATDR------TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL 328 (662)
T ss_dssp EEEECT------TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE
T ss_pred EEEECC------CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE
Confidence 655532 55 7888887677655444433222 567889999999999998 99999966532 335
Q ss_pred cceeccCCceeee-eecc
Q 040533 346 GDFVSHLDGLLSL-KVSP 362 (364)
Q Consensus 346 ~~~~~~~~~v~~~-~~sp 362 (364)
..+..|.+.+.++ ++++
T Consensus 329 ~~l~~~~~~~~~~~s~~~ 346 (662)
T 3azo_A 329 VDAAGPWTEWAATLTVSG 346 (662)
T ss_dssp EECCSSCCEEEEEEEEET
T ss_pred EEecCCCCeEEEEEecCC
Confidence 5566666667766 5443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=177.14 Aligned_cols=254 Identities=12% Similarity=0.028 Sum_probs=174.6
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCc-----EEEEEeecCCCCEEEEeeCC---------Cc
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKR-----VATASWNHWNGHILTSGSQD---------KS 153 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~d---------g~ 153 (364)
....+++|+|||++++++ ||.|++||+.+++....+..|... ...++|+| ++++|+.++.+ +.
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceE
Confidence 346689999999988886 899999999999887777776533 23478899 99999998876 56
Q ss_pred EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc--------------
Q 040533 154 IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA-------------- 219 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------------- 219 (364)
+.+||+.+++ ...+..+...+...+|||||+.||.+. ++.|++||+..+...+ + +..++..
T Consensus 94 ~~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~-l-t~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 94 YDIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR-I-TWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-C-CSCCBTTTEEESBCCHHHHHH
T ss_pred EEEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE-E-cCCCCccceecCcccccccch
Confidence 6799998776 334566778899999999999999885 6899999987654211 1 1112221
Q ss_pred ---ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 220 ---AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 220 ---~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
....+.|+|||+.++.... .++.+.+|++....... .....+..+.+.+.|... ....|++||
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~--d~~~v~~~~~~~~~~~~--~~~~~~~~~~yp~~G~~~----------~~~~l~v~d 234 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQF--NDTEVPLIEYSFYSDES--LQYPKTVRVPYPKAGAVN----------PTVKFFVVN 234 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEE--ECTTCCEEEEEECCSTT--CSSCEEEEEECCBTTSCC----------CEEEEEEEE
T ss_pred hcCCCcceEECCCCCEEEEEEE--cccCCceEEEEeecCCC--CCCCcceeecCCCCcCcC----------CeeEEEEEE
Confidence 1235899999977766543 45557777753111000 112335566666655421 145799999
Q ss_pred CCC---Cc--eeeecc------ccccceeEEeecCCCCEEEEEeC----CCcEEEEEeeCCC----C--Ccce--eccCC
Q 040533 297 YPH---MT--KWGELQ------HQTSRILELSQSPDGLTVVSAAA----DETLRFWEAFGPS----G--SGDF--VSHLD 353 (364)
Q Consensus 297 ~~~---~~--~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~----dg~i~vw~~~~~~----~--~~~~--~~~~~ 353 (364)
+.+ ++ ....+. +|...+..++|+|||+.++.... +..|++||+.+++ . ...+ .+|..
T Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~ 314 (740)
T 4a5s_A 235 TDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG 314 (740)
T ss_dssp TTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSS
T ss_pred CCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCc
Confidence 998 73 223333 37788999999999997666532 3479999999987 1 2223 34555
Q ss_pred cee-----eeeeccC
Q 040533 354 GLL-----SLKVSPI 363 (364)
Q Consensus 354 ~v~-----~~~~sp~ 363 (364)
.|. .++|||.
T Consensus 315 ~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 315 WVGRFRPSEPHFTLD 329 (740)
T ss_dssp CSSSSSCCCCEECTT
T ss_pred eEccCcCCCceEcCC
Confidence 544 7888885
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-19 Score=153.62 Aligned_cols=243 Identities=10% Similarity=0.074 Sum_probs=164.4
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECC-CCceeeeeeecCCCCCceEEEEcCCCCE--EEEEe-------------cCC
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQE-NGEVQKLLKVTGEDDFPTSISWSQDAKT--LAVGY-------------MAS 109 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~-------------~dg 109 (364)
...++|+|++ +++++.+ .|.+|++. +++.........+ +.+.+++|+|+|++ ++++. .+|
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 5567788864 4444555 99999997 7766544333222 23677999999994 44543 588
Q ss_pred cEEEEecC-Ccceeeeee----cCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcc-cCcce-eeeee--cccCcEEEE
Q 040533 110 KLQLWDAE-TSKLIRNLE----GHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVR-VSNNV-TSRIN--AHTAEVCGL 179 (364)
Q Consensus 110 ~i~iw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~-~~~~~-~~~~~--~~~~~v~~~ 179 (364)
.+.+|++. +++....+. .+...+.+++|+| ++++|++++. ++.|.+||+. +++.. ...+. .|...+..+
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~ 198 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence 99999997 465544443 2456799999999 8988877654 6799999997 55421 12222 235678999
Q ss_pred EEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcc------eEEec----cccc------ceeEEE-EccCCCcEEEeecCCC
Q 040533 180 KWSNEGNLLASGGD-DNLVHVWDHSKMSSSKC------LHRFR----DHRA------AVKALA-WCPYQFNVLASGGGTQ 241 (364)
Q Consensus 180 ~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~------~~~~~----~~~~------~v~~~~-~~~~~~~~~~~~~g~~ 241 (364)
+|+|+|+++++++. ++.|.+|++.... ++. +..+. ++.. .+..++ |+|+++.++++..+ .
T Consensus 199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-~ 276 (365)
T 1jof_A 199 AMHPTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-N 276 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-S
T ss_pred EECCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-C
Confidence 99999999888775 6899999865311 111 11111 1122 478999 99999877765431 1
Q ss_pred C----CeEEEEECC-CCeEEEE---Ee-cCCCeEEEEEcC---CccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 242 D----GCIKIWNVQ-KGTCIHS---VD-TKAQICGLEWNR---HHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 242 d----~~i~i~d~~-~~~~~~~---~~-~~~~v~~~~~~~---~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
+ +.|.+|++. +++.... .. .......++|+| +|++|+++.. +++.|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~-----~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD-----QEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS-----SSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc-----CCCeEEEEEEchh
Confidence 2 289999996 5665432 32 234567899999 8999988742 3589999998655
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=148.44 Aligned_cols=262 Identities=8% Similarity=0.049 Sum_probs=186.1
Q ss_pred cccCCCcc-EE-EEE----------eCCeEEEEECCCCceeeeeeecC----CCCCceEEEEcCCCCEEEEEec--CCcE
Q 040533 50 MMDWGRNN-IL-AIA----------LGLELYLWKQENGEVQKLLKVTG----EDDFPTSISWSQDAKTLAVGYM--ASKL 111 (364)
Q Consensus 50 ~~~~~~~~-~~-~~~----------~~~~i~iw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~--dg~i 111 (364)
.++++|++ .+ ++. .++.|.+||..+++......+.. +...+..++++|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 67888864 33 333 25679999999888765555421 2356788999999999998874 5789
Q ss_pred EEEecCCcceeee-eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee------eeecccCcEEEEEEcCC
Q 040533 112 QLWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS------RINAHTAEVCGLKWSNE 184 (364)
Q Consensus 112 ~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~~~v~~~~~~~~ 184 (364)
.+||+.+++.+.. +.. .. ...+.+.|.....+++.+.||.+.+|++........ .+.....++ .+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred EEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence 9999999988877 553 22 233566774457888899999999999875333231 112222222 2334567
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecc------c----ccceeEEEEccCCCcEEEeec--CC------CCCeEE
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD------H----RAAVKALAWCPYQFNVLASGG--GT------QDGCIK 246 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~----~~~v~~~~~~~~~~~~~~~~~--g~------~d~~i~ 246 (364)
+..++..+.++.|.++|+..... .....+.. + ......++|+|+++.++++.. +. ..+.|.
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~ 289 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIW 289 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEE
Confidence 77777778899999999864321 11121110 0 111223789999888777642 00 135899
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC--ceeeeccccccceeEEeecCCCC
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM--TKWGELQHQTSRILELSQSPDGL 323 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~ 323 (364)
+||+.+++.+..+..+. ..+++|+|+|++|+++. ++.|.+||..++ +.+.++..+......++++|+|+
T Consensus 290 viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-------~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 290 VMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD-------GGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC-------SSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC-------CCeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999998888 99999999999988763 389999999999 99988766677788999999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=148.06 Aligned_cols=254 Identities=11% Similarity=0.085 Sum_probs=169.7
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---C--cEEEEecCCcceeeeeecCCCcEEEEEee
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---S--KLQLWDAETSKLIRNLEGHDKRVATASWN 138 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 138 (364)
++.|++||+.+++...+ ..+..++|||||++||.++.+ + .|.+|++.+++....... .. +..++|+
T Consensus 42 ~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEEC
T ss_pred cceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeEC
Confidence 56899999998875443 457899999999999987754 3 388888888776555443 34 9999999
Q ss_pred cCCCCEEEEeeCC---------------------------CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE
Q 040533 139 HWNGHILTSGSQD---------------------------KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG 191 (364)
Q Consensus 139 ~~~~~~l~~~~~d---------------------------g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (364)
| +++.|+.++.+ ..|.+||+.+++. ...+.. . .+..++|+|+| +++++
T Consensus 113 p-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 113 E-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp T-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred C-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe-EEEEE
Confidence 9 88888877632 5688999886653 133333 3 77889999999 77777
Q ss_pred eCCC-------eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC-----CCCeEEEEECCCCeEEEEE
Q 040533 192 GDDN-------LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT-----QDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 192 ~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~~~~~~~~~ 259 (364)
..+. ...+|.+... + ...+..+ ..+..+ +|+|+.+++.+... ....|.+|| +++.....
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~---~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDG---K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETT---E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred ecccccccccccccEEEeCCC---c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 6542 3344443322 1 3333333 444444 99998777665310 135788888 55544333
Q ss_pred ec-CCCeEE-EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcE-EE
Q 040533 260 DT-KAQICG-LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETL-RF 336 (364)
Q Consensus 260 ~~-~~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i-~v 336 (364)
.. ...+.. +.|+ ++ .++++.. ++.+++| +.+++. ..+..+...|.+++|+| .++++++.++.. .+
T Consensus 259 ~~~~~~~~~~~~~s-dg-~~~~~~~------~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l 326 (347)
T 2gop_A 259 DEVDRGVGQAKIKD-GK-VYFTLFE------EGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLREL 326 (347)
T ss_dssp TTCCSEEEEEEEET-TE-EEEEEEE------TTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEE
T ss_pred ccCCcccCCccEEc-Cc-EEEEEec------CCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHh
Confidence 33 345775 8999 88 6666543 7899999 876554 34444577899999999 677787777765 78
Q ss_pred EEeeCCCCCcceeccCCc
Q 040533 337 WEAFGPSGSGDFVSHLDG 354 (364)
Q Consensus 337 w~~~~~~~~~~~~~~~~~ 354 (364)
|.+. ++ ...+..|...
T Consensus 327 ~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 327 FTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp EEES-SS-EEECCCTTST
T ss_pred eEeC-Cc-EEEeccccHh
Confidence 8776 33 4445555443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-20 Score=159.59 Aligned_cols=282 Identities=11% Similarity=0.025 Sum_probs=181.3
Q ss_pred EEEECCCCceeeeeeecCCC-----CCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeec
Q 040533 68 YLWKQENGEVQKLLKVTGED-----DFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 68 ~iw~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (364)
...|..+++....+. .+. ..+.+++|+|||++|+..... ..|.+||+.+++.......+......+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~--~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLT--PTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECS--CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEe--cCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC
Confidence 344666765433322 332 237888999999998877543 3688899988876544333332233478999
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEE-------------------EEEcCCCCEEEEE-----eCCC
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG-------------------LKWSNEGNLLASG-----GDDN 195 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~ 195 (364)
+++.|+.++.++.|++||+.+++. ......+...... +.|+|+++.++.. ..+.
T Consensus 91 -dg~~l~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 91 -DERAFFYVKNELNLMKVDLETLEE-QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp -TSSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred -CCCEEEEEEcCCcEEEEECCCCCc-EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 999999999999999999987653 3333323332222 3567777766654 3567
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEcc-CCCcEEEeecCCCC----CeEEEEECCCCeEEEEEec--CCCeEEE
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQD----GCIKIWNVQKGTCIHSVDT--KAQICGL 268 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~d----~~i~i~d~~~~~~~~~~~~--~~~v~~~ 268 (364)
.|++||+..+. ...+..+...+..+.|+| ++..++.+..+ .. ..|.+||+..++....... ...+..+
T Consensus 169 ~l~~~d~~~g~----~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 169 RLIKVDIETGE----LEVIHQDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp EEEEEETTTCC----EEEEEEESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred eEEEEECCCCc----EEeeccCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 89999987643 223334567788999999 67655554421 22 5799999876654333222 1247789
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-CCCEEEEEe----------------CC
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-DGLTVVSAA----------------AD 331 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~----------------~d 331 (364)
.|+|+|+.|+..... .+...+.|++||+.+++........ . .. +.|+| +|+++++++ .+
T Consensus 244 ~~spdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYF-KGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EECTTSSCEEEEEEE-TTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred EECCCCCEEEEEecC-CCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 999999987765321 0111255999999887654332211 1 23 89999 999888765 34
Q ss_pred CcEEEEEeeCCCCCcceeccCC-----------ceeeeeeccC
Q 040533 332 ETLRFWEAFGPSGSGDFVSHLD-----------GLLSLKVSPI 363 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~~~~-----------~v~~~~~sp~ 363 (364)
+.|++||+.+++. ..+..+.. .+..++|+|.
T Consensus 320 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~d 361 (396)
T 3c5m_A 320 PFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPN 361 (396)
T ss_dssp CEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred CcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccC
Confidence 7899999887664 34554444 2566788874
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-16 Score=143.50 Aligned_cols=289 Identities=8% Similarity=0.008 Sum_probs=203.0
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--CcceeeeeecCCCcEEEEEee
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE--TSKLIRNLEGHDKRVATASWN 138 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~ 138 (364)
...++.|.++|..+++....+.. ...+..+.|+|||+++++++.++.|.+||+. +++.+..+... .....++|+
T Consensus 173 ~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s 248 (567)
T 1qks_A 173 LRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETS 248 (567)
T ss_dssp ETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEEC
T ss_pred eCCCCeEEEEECCCCeEEEEEeC---CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEc
Confidence 33578999999999987655542 3357799999999999999999999999996 78888877753 456789999
Q ss_pred ----cCCCCEEEEee-CCCcEEEEEcccCcceeeeeec----------ccC-cEEEEEEcCCCCE-EEEEeCCCeEEEEe
Q 040533 139 ----HWNGHILTSGS-QDKSIINHDVRVSNNVTSRINA----------HTA-EVCGLKWSNEGNL-LASGGDDNLVHVWD 201 (364)
Q Consensus 139 ----~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~-l~~~~~d~~i~iwd 201 (364)
| ++++++++. .++.+.++|..+.+.+ ..+.. |.. .+..+..++++.. ++....+|.|.++|
T Consensus 249 ~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~-~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd 326 (567)
T 1qks_A 249 KMEGW-EDKYAIAGAYWPPQYVIMDGETLEPK-KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 326 (567)
T ss_dssp CSTTC-TTTEEEEEEEETTEEEEEETTTCCEE-EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred cccCC-CCCEEEEEEccCCeEEEEECCCCcEE-EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 6 887777665 5589999998876643 33221 222 6788888887654 44455679999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCe---EEEE-EcCCccc
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQI---CGLE-WNRHHKE 276 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v---~~~~-~~~~~~~ 276 (364)
....... .+..+ ........+.|+|++++++++.. .++.|.++|+.+++.+..+.. .... ..+. ++|++..
T Consensus 327 ~~~~~~~-~v~~i-~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~ 402 (567)
T 1qks_A 327 YTDLNNL-KTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP 402 (567)
T ss_dssp TTCSSEE-EEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred cCCCccc-eeeee-eccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCc
Confidence 8764321 12222 23345678899999998888775 688999999999998888765 3211 2333 5787444
Q ss_pred eeeeccCCccCCCCeEEEeeCCC-------CceeeeccccccceeEEeecCCCCEEEEEeC-------CCcEEEEEeeCC
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPH-------MTKWGELQHQTSRILELSQSPDGLTVVSAAA-------DETLRFWEAFGP 342 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-------dg~i~vw~~~~~ 342 (364)
+.+... -.++.|.++|..+ .+.+.++......-..+..+|++++|.+... .+.|.++|+.+.
T Consensus 403 v~~t~~----~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 403 VWATSH----MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEB----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEeCC----CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 443221 1268999999987 6677777655443355788999999988663 359999999877
Q ss_pred -----CCC-ccee--------ccCCceeeeeeccC
Q 040533 343 -----SGS-GDFV--------SHLDGLLSLKVSPI 363 (364)
Q Consensus 343 -----~~~-~~~~--------~~~~~v~~~~~sp~ 363 (364)
... ..+. .....+..+.|+|.
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD 513 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence 221 2221 11346778888774
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-18 Score=159.46 Aligned_cols=267 Identities=10% Similarity=0.059 Sum_probs=183.7
Q ss_pred eEEEEECCCCceeeeeee----cCCCCCceEEEEcCCCCEEEEEecCC-----cEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 66 ELYLWKQENGEVQKLLKV----TGEDDFPTSISWSQDAKTLAVGYMAS-----KLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
.+++.+..+++...++.. .+|...+..++|||||++||.+..++ .|++||+.+++.......+ ..+..++
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~ 177 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMA 177 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEE
Confidence 455555545543322211 13444688999999999999876543 8999999999876543322 2366799
Q ss_pred eecCCCCEEEEeeCCCc----------------EEEEEcccCcce---eeeeecccCcEEEEEEcCCCCEEEEEeC----
Q 040533 137 WNHWNGHILTSGSQDKS----------------IINHDVRVSNNV---TSRINAHTAEVCGLKWSNEGNLLASGGD---- 193 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 193 (364)
|+| +++.|+.++.++. |++|++.++... +.....+...+..+.|+|||++|+.++.
T Consensus 178 wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 178 WTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp ECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred EEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 999 9999988887765 999999876531 1122224556789999999999888764
Q ss_pred -CCeEEEEeCCC------CCCCcceEEecccccceeEEEEccCCCcEEEeecC-CCCCeEEEEECCCCeE---EEEEecC
Q 040533 194 -DNLVHVWDHSK------MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG-TQDGCIKIWNVQKGTC---IHSVDTK 262 (364)
Q Consensus 194 -d~~i~iwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~~~---~~~~~~~ 262 (364)
+..|++||+.. +. .....+..+...+.. .|+|++..+++.+.. ...+.|.+||+.++.. ...+.+.
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~--~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGI--LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSS--CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred CccEEEEEECcccccccCCc--cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence 56899999865 21 124445555555544 488888777776531 1245799999987642 2233333
Q ss_pred C--CeEEEEEcCCccceeeeccCCccCCCC--eEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE-e---CCCcE
Q 040533 263 A--QICGLEWNRHHKEILSGHGFSSSGDGQ--KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA-A---ADETL 334 (364)
Q Consensus 263 ~--~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~---~dg~i 334 (364)
. .+..+.|++++.++++... ++ .|++|++.+++.+..+..+.+.+..+.++|++..++.. + ..+.|
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~------~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 407 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLH------DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII 407 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEE------TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred CCCeEEEEEEEcCCEEEEEEEE------CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence 3 5788999977777766643 55 57778887788777787777888999999999766533 2 35789
Q ss_pred EEEEeeCCC
Q 040533 335 RFWEAFGPS 343 (364)
Q Consensus 335 ~vw~~~~~~ 343 (364)
+.||+.+++
T Consensus 408 ~~~d~~tg~ 416 (710)
T 2xdw_A 408 YHCDLTKEE 416 (710)
T ss_dssp EEEETTSSS
T ss_pred EEEECCCCc
Confidence 999998766
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-17 Score=139.95 Aligned_cols=276 Identities=10% Similarity=-0.014 Sum_probs=189.6
Q ss_pred CCeEEEEECCCCceeeeeee----cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeec
Q 040533 64 GLELYLWKQENGEVQKLLKV----TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (364)
++.|.++|.++++....... ......+..+.+. +++..++...++.|.+||..+++.+.++. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 67999999999886543311 0122446778875 34455555567899999999999988886 456788999988
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-----CcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcceE
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-----AEVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~ 212 (364)
++.++++...++.|.+||+.+.+. ...+.... .....+++ . +..++++. .++.|.++|..+.. .+.
T Consensus 94 -~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~---~~~ 166 (328)
T 3dsm_A 94 -DEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK---VVD 166 (328)
T ss_dssp -TTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE---EEE
T ss_pred -CCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe---EEE
Confidence 775555554889999999987653 33333222 14456777 3 44555554 48899999987643 344
Q ss_pred EecccccceeEEEEccCCCcEEEeecCCC--------CCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeecc
Q 040533 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQ--------DGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--------d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~ 282 (364)
.+.. ......++++|+++ ++++..+.. .+.|.++|..+++....+.. ......++++|+++.++++
T Consensus 167 ~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~-- 242 (328)
T 3dsm_A 167 ELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI-- 242 (328)
T ss_dssp EEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE--
T ss_pred EEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE--
Confidence 4433 23457889999985 555443110 27899999999998877765 3468999999999999887
Q ss_pred CCccCCCCeEEEeeCCCCceeee--ccccccceeEEeecC-CCCEEEEE----eCCCcEEEEEeeCCCCCcceeccCCce
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGE--LQHQTSRILELSQSP-DGLTVVSA----AADETLRFWEAFGPSGSGDFVSHLDGL 355 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~-~~~~l~~~----~~dg~i~vw~~~~~~~~~~~~~~~~~v 355 (364)
++.|.+||..+++.... +.........++++| ++.++++. ..++.|.+||.. ++.+..+.. ....
T Consensus 243 ------~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P 314 (328)
T 3dsm_A 243 ------NNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIP 314 (328)
T ss_dssp ------SSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESE
T ss_pred ------ccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCc
Confidence 44899999988776422 222245678999999 55555555 578999999987 777776653 2333
Q ss_pred eeeee
Q 040533 356 LSLKV 360 (364)
Q Consensus 356 ~~~~~ 360 (364)
..++|
T Consensus 315 ~~~~~ 319 (328)
T 3dsm_A 315 GAFCW 319 (328)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 44444
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-17 Score=141.64 Aligned_cols=246 Identities=9% Similarity=0.142 Sum_probs=165.8
Q ss_pred CCceEEEEcCCCCEEEEEe---------cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---C--c
Q 040533 88 DFPTSISWSQDAKTLAVGY---------MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---K--S 153 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g--~ 153 (364)
..+..+++ ||++++... .++.|.+||+.+++... + ..+..++|+| +++.|+..+.+ + .
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISP-DGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECT-TSSEEEEEEEETTTTEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECC-CCCEEEEEEeccCCCcce
Confidence 34667777 888887652 25679999998876533 3 4678899999 99988877654 3 3
Q ss_pred EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC---------------------------CeEEEEeCCCCC
Q 040533 154 IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD---------------------------NLVHVWDHSKMS 206 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------~~i~iwd~~~~~ 206 (364)
|.+||+.+++. .... .+.. +..++|+|+|+.|+.++.+ ..|++||+..+.
T Consensus 87 l~~~~~~~g~~-~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 87 IWVADLETLSS-KKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEEEETTTTEE-EEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred EEEEECCCCce-EEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 77778776542 2222 3334 9999999999988887632 578999987543
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCC-------CCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ-------DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~-------d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
.+..+.. . .+..+.|+|++ +++++.... ...|.++| +++....... ..+..+ +|+|+.++.
T Consensus 164 ---~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 164 ---VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp ---EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEE
T ss_pred ---EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEE
Confidence 2233433 3 78899999998 555443111 22455566 5554433333 444443 999998876
Q ss_pred eccCCc--cCCCCeEEEeeCCCCceeeeccccccceeE-EeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCcee
Q 040533 280 GHGFSS--SGDGQKLCLWKYPHMTKWGELQHQTSRILE-LSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLL 356 (364)
Q Consensus 280 ~~~~~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~ 356 (364)
...... ......|.+|| +++.......+...+.. +.|+ ++ ++++++.++.+++| +.+++ ...+..+...|.
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~~v~ 305 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRHWIM 305 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEEEECSSSEEE
T ss_pred EEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCCeEE
Confidence 642110 01235788888 56555555566777886 9999 88 89999999999999 88543 344445577899
Q ss_pred eeeecc
Q 040533 357 SLKVSP 362 (364)
Q Consensus 357 ~~~~sp 362 (364)
+++|+|
T Consensus 306 ~~~~s~ 311 (347)
T 2gop_A 306 GFDVDE 311 (347)
T ss_dssp EEEESS
T ss_pred eeeeeC
Confidence 999987
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-17 Score=136.39 Aligned_cols=236 Identities=12% Similarity=0.095 Sum_probs=171.3
Q ss_pred CCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++| +++++++...++.|.+||..+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCC
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCc
Confidence 4455678999999998 7788888999999999877 566666778899999999 89988877777899999987665
Q ss_pred ceeeeeecc----cCcEEEEEEcCCCCEEEE----Ee-------------CCCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 164 NVTSRINAH----TAEVCGLKWSNEGNLLAS----GG-------------DDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 164 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
. ....... ...+..++++|+|+++++ ++ ..+.|..++.. . + ...+..+.....
T Consensus 102 ~-~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 102 W-ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---T-LSAPIRDRVKPN 175 (296)
T ss_dssp E-EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---C-EEEEECCCSSEE
T ss_pred E-EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C---C-EEEeecCCCCCc
Confidence 3 2222111 234567999999998887 32 13456666643 1 1 334444556678
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECC-CCeE---EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTC---IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~---~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.++|+|+++.+ ++.. .++.|.+|++. +++. ...+. ....+..++++++|++.++. ++.|.+|+.
T Consensus 176 gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--------~~~v~~~~~ 244 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--------GDGVHVLTP 244 (296)
T ss_dssp EEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--------TTEEEEECT
T ss_pred cEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--------CCeEEEECC
Confidence 99999999766 6654 68899999987 5554 23331 22446789999999876654 688999998
Q ss_pred CCCceeeeccccccceeEEee-cCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 298 PHMTKWGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
. ++.+..+..+.. +++++| +|+++.|++++.++ +.-++..+.+
T Consensus 245 ~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 245 D-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp T-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred C-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 6 777777877777 899999 58999898888763 4444444433
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-18 Score=142.67 Aligned_cols=261 Identities=8% Similarity=0.020 Sum_probs=183.0
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
...|.+++|++++..++....++.++.| .++....+..+...+.+++|+| ++++++++..++.|.+||..+++. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~-~ 79 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEI-K 79 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-E
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcE-E
Confidence 3457788899988777776778889999 3555666777777889999999 888888888899999999886653 3
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCCCcceEEec--ccccceeEEEEccCCCcEEEeecC-
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDD----NLVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGG- 239 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g- 239 (364)
.....+...+.+++++++++++++...+ +.|.+||...... ...+. .....+..++++|++. ++++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~ 155 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL---QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRG 155 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC---EEEECSSSSCCCEEEEEECTTSC-EEEEECCC
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE---EEEEccCccCCcccceEECCCCC-EEEEeccc
Confidence 3333456789999999999888777666 6899999765432 11121 2345688999999985 5554320
Q ss_pred ---CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeee--------cc
Q 040533 240 ---TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGE--------LQ 307 (364)
Q Consensus 240 ---~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~--------~~ 307 (364)
...+.|..+|..+++..........+..++|+|+++.++.+. ..++.|.+|+..+ +..+.. +.
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-----~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE-----TTANRLHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE-----GGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe-----CCCCeEEEEEecCCCcCcccccceEEEecC
Confidence 013567777776655544333345678999999998665542 1268999999864 333221 12
Q ss_pred ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCC------ceeeeeeccC
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD------GLLSLKVSPI 363 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~------~v~~~~~sp~ 363 (364)
++ ..+..++++++|+++++...++.|.+||. .++....+..+.. .+.+++|+|.
T Consensus 231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 22 46788999999998888888899999997 4454455543332 5889999874
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-17 Score=134.41 Aligned_cols=242 Identities=8% Similarity=-0.023 Sum_probs=168.4
Q ss_pred CceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 89 FPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
.+.+++++++|++++ +...++.|.+|+..++........+...+.++++++ +++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 678999999998766 446788999999766543322223335678899999 788666655 88999999875442 22
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
........+..++++++++++++...++.|.+|+...... ..........+..+++++++. ++++.. .++.|.+
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~ 175 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVK 175 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC---EECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee---EeeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEE
Confidence 1112335689999999998777777788999997543221 111122234578899999885 666554 5789999
Q ss_pred EECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 248 WNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 248 ~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
||............. ..+..++++++|...++... ++.|.+|+............+...+.+++++++|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~------~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT------TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEEECC------CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence 998876654332222 56889999999966665532 78899999876544433323345689999999999888
Q ss_pred EEeCCCcEEEEEeeCCCCC
Q 040533 327 SAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~ 345 (364)
+...++.|+++++...+..
T Consensus 250 ~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp EEGGGTEEEEECCCGGGSC
T ss_pred EECCCCEEEEEcCCCcccc
Confidence 8889999999998776543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-17 Score=132.31 Aligned_cols=233 Identities=10% Similarity=0.007 Sum_probs=173.7
Q ss_pred CCCEEEEEecCCcEEEEecCCcceeeeeecCC-CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cCc
Q 040533 98 DAKTLAVGYMASKLQLWDAETSKLIRNLEGHD-KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TAE 175 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~ 175 (364)
.+++|++++.++.|.+||.++|+.+.++..+. ..+.++.++| ++++++ +.++.|..||. +++. +..+..+ ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCcc
Confidence 45789999999999999999999999998765 4788999999 999888 34678999998 5654 4445443 357
Q ss_pred EEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcceEEec------ccccceeEEEEccCCCcEEEeecCCCCCeEEEE
Q 040533 176 VCGLKWSNEGNLLASGGD-DNLVHVWDHSKMSSSKCLHRFR------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 176 v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
+.++.+.++|+++++.+. ++.+..+|.. ++.+..+. .+......+++.+++. ++++.. .++.|..|
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~----Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~--~~~~v~~~ 151 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMK----GEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLF--ATSEVREI 151 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTT----SCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEET--TTTEEEEE
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCC----CCEEEEEeccCCCCcccccccCceECCCCC-EEEEec--CCCEEEEE
Confidence 889999999999999887 7778777742 23344432 1223455677888885 555544 68999999
Q ss_pred ECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc------cceeEEeecCCC
Q 040533 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT------SRILELSQSPDG 322 (364)
Q Consensus 249 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~------~~i~~i~~~~~~ 322 (364)
|.. |+.+.++.......++...++|..++++.. ++.|..+|..+++.+.++..+. ..+..+...++|
T Consensus 152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G 224 (276)
T 3no2_A 152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG 224 (276)
T ss_dssp CTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred CCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC
Confidence 998 999999987777778888999998887643 6789999999999988876432 237888899999
Q ss_pred CEEEEEeCC--------CcEEEEEee-CCCCCccee
Q 040533 323 LTVVSAAAD--------ETLRFWEAF-GPSGSGDFV 349 (364)
Q Consensus 323 ~~l~~~~~d--------g~i~vw~~~-~~~~~~~~~ 349 (364)
.++++.... +..+++++. +++.+..+.
T Consensus 225 ~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 225 GLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp CEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred CEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 988877421 234566663 444444443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=156.32 Aligned_cols=263 Identities=12% Similarity=-0.027 Sum_probs=175.3
Q ss_pred eEEEEECCCCceeeeeee----cCCCCCceEEEEcCCCCEEEEEe-----cCCcEEEEecCCccee-eeeecCCCcEEEE
Q 040533 66 ELYLWKQENGEVQKLLKV----TGEDDFPTSISWSQDAKTLAVGY-----MASKLQLWDAETSKLI-RNLEGHDKRVATA 135 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~ 135 (364)
.|++.+..+++...+... .+|...+..++|||||++||.+. .+..|++||+.+++.+ .... .......+
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~ 173 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATP 173 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCC
T ss_pred EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-Ccccccce
Confidence 456666555554444322 24555789999999999998543 3468999999998865 2111 11112678
Q ss_pred EeecCCCCEEEEeeCCCc-------------EEEEEcccCcc---eeeeeecccCcEEEEEEcCCCCEEEEEeCCC----
Q 040533 136 SWNHWNGHILTSGSQDKS-------------IINHDVRVSNN---VTSRINAHTAEVCGLKWSNEGNLLASGGDDN---- 195 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~-------------i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---- 195 (364)
+|+| +++.|+.++.+.. |++|++.++.. ++.....+...+..+.|+|||++|+.++.++
T Consensus 174 ~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 174 KWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp EECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred EEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 9999 9999999888766 99999987652 2223334556788999999999988877665
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec-CCCCCeEEEEECCCCeE---EEEEec--CCCeEEEE
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKGTC---IHSVDT--KAQICGLE 269 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~---~~~~~~--~~~v~~~~ 269 (364)
.|++||.... ....+..+...+....+ +++. +++... +..++.|.+||+.++.. ...+.. ...+..++
T Consensus 253 ~l~~~~~~~~----~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~ 326 (695)
T 2bkl_A 253 DVYWKRPGEK----DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS 326 (695)
T ss_dssp EEEEECTTCS----SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE
T ss_pred EEEEEcCCCC----ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE
Confidence 6777764332 23444445555666666 6666 555542 11358999999987653 333333 23478888
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCC-CCceeeecccc-ccceeEEeecCCCCEEEEE----eCCCcEEEEEeeCCC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQ-TSRILELSQSPDGLTVVSA----AADETLRFWEAFGPS 343 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~----~~dg~i~vw~~~~~~ 343 (364)
++ ++..+++... ++..++|.+. +++....+..+ .+.+..+.++|+++.++.. ...++|++||+.+++
T Consensus 327 ~~-~~~lv~~~~~------dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 327 IV-GGHLSLEYLK------DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EE-TTEEEEEEEE------TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EE-CCEEEEEEEE------CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88 5666665533 7777776554 45556666554 5678889999999877633 335789999988765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-16 Score=130.68 Aligned_cols=234 Identities=12% Similarity=0.247 Sum_probs=164.6
Q ss_pred eecccCCCcc-EEEE-EeCCeEEEEECCCCceeeeeee----cCCCCCceEEEE-cCCCCEEEEEec-CCcEEEEecCCc
Q 040533 48 SNMMDWGRNN-ILAI-ALGLELYLWKQENGEVQKLLKV----TGEDDFPTSISW-SQDAKTLAVGYM-ASKLQLWDAETS 119 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~-~~~~~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~-s~~~~~l~~~~~-dg~i~iw~~~~~ 119 (364)
...+++++++ ++++ ..++.|.+||.. ++....+.. .++...+..+++ .++++++++... ++.|.+|| .++
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g 109 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG 109 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCC
Confidence 4556666654 4444 457899999987 443332221 134457899999 567776666643 78999999 567
Q ss_pred ceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee--cccCcEEEEEEcCCCCEEEEEeCCCe
Q 040533 120 KLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN--AHTAEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 120 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
+.+..+.. +...+..++++| +++++++...++.|.+||.. ++ ....+. .+...+..++++++++++++...++.
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred cEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CC-EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 76666643 345789999999 88888888888999999965 33 233332 34456899999999988887778899
Q ss_pred EEEEeCCCCCCCcceEEeccc--ccceeEEEEccCCCcEEEeecCCCCC-eEEEEECCCCeEEEEEecC---CCeEEEEE
Q 040533 197 VHVWDHSKMSSSKCLHRFRDH--RAAVKALAWCPYQFNVLASGGGTQDG-CIKIWNVQKGTCIHSVDTK---AQICGLEW 270 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~---~~v~~~~~ 270 (364)
|++||... +.+..+..+ ...+..+++++++ .++++.. .++ .|.+||. +++.+..+..+ ..+.++++
T Consensus 187 i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 187 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNG-EILIADN--HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTC-CEEEEEC--SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred EEEEcCCC----CEEEEEccCCccCCCcEEEECCCC-CEEEEeC--CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 99999642 234444332 3568899999998 5666554 455 9999995 56666666543 23779999
Q ss_pred cCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
+|+|+++++. . ++.|++|++....
T Consensus 259 ~~~g~l~vs~-~------~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 259 MDDGSVVLAS-K------DYRLYIYRYVQLA 282 (286)
T ss_dssp ETTTEEEEEE-T------TTEEEEEECSCCC
T ss_pred CCCCcEEEEC-C------CCeEEEEEccccc
Confidence 9999876663 2 8999999986543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-14 Score=120.53 Aligned_cols=271 Identities=7% Similarity=-0.015 Sum_probs=185.7
Q ss_pred eecccCCCcc-EEEEEe-CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN-ILAIAL-GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
...++.++++ ++.+.. ++.|.+||.. ++... .....+...+.+++++++|.++++...++.|..|+.. ++. ..+
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~ 92 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY 92 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence 5566666654 555544 6899999988 55432 2223345779999999999988777668889999976 432 222
Q ss_pred e--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 126 E--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 126 ~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
. .....+..+++.| ++.++++...++.|..||. ++.............+..+++.+++++.++...++.|..||.
T Consensus 93 ~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 169 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE- 169 (299)
T ss_dssp ECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred eCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence 2 2455789999998 8888888777889999998 444222222234467899999999988777767789999997
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeee
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~ 280 (364)
+... . ..........+..+++++++. ++++.. .++.|..||. +++... +.. ...+.+++++++|...++.
T Consensus 170 ~g~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 170 SGDI-T-EFKIPTPASGPVGITKGNDDA-LWFVEI--IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp TCCE-E-EEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEE
T ss_pred CCcE-E-EeeCCCCCCcceeEEECCCCC-EEEEcc--CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEec
Confidence 3221 1 111223345678999999885 555543 4789999999 666433 322 2568999999999866654
Q ss_pred ccCCccCCCCeEEEeeCCCCceeee--ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGE--LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
.. ++.|..||. +++ +.. +..+...+.++++ ++|.+.++.+ .+.|..++..+.
T Consensus 243 ~~------~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 243 WG------ANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TT------TTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred cC------CceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 22 789999998 443 233 2344567899999 8888776655 567777777654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-15 Score=135.37 Aligned_cols=290 Identities=12% Similarity=0.053 Sum_probs=200.4
Q ss_pred ecccCCCcc--EEEEEeCCeEEEEECC--CCceeeeeeecCCCCCceEEEEc----CCCCEEEEEec-CCcEEEEecCCc
Q 040533 49 NMMDWGRNN--ILAIALGLELYLWKQE--NGEVQKLLKVTGEDDFPTSISWS----QDAKTLAVGYM-ASKLQLWDAETS 119 (364)
Q Consensus 49 ~~~~~~~~~--~~~~~~~~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~-dg~i~iw~~~~~ 119 (364)
..+.++|++ +++++.++.|.+||+. +++...... . ......++|+ |||++++++.+ ++.|.|+|..+.
T Consensus 200 ~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 200 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--I-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--C-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred cceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--c-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 456777753 5666778899999995 665543332 2 3346899999 69998888764 589999999999
Q ss_pred ceeeeeecC-----------CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE
Q 040533 120 KLIRNLEGH-----------DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 120 ~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
+.+..+... ...+..+..++....+++....+|.|.++|......+.............+.|+|+++++
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 888776531 226788888884455666667789999999876543222222334456788999999988
Q ss_pred EEEe-CCCeEEEEeCCCCCCCcceEEecc-----cccceeEEE-EccCCCcEEEeecCCCCCeEEEEECCC-------Ce
Q 040533 189 ASGG-DDNLVHVWDHSKMSSSKCLHRFRD-----HRAAVKALA-WCPYQFNVLASGGGTQDGCIKIWNVQK-------GT 254 (364)
Q Consensus 189 ~~~~-~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~-~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~ 254 (364)
+++. .++.|.++|+.+.+. +..+.. |.+ ..+. ++|++..+++++. -.++.|.++|..+ .+
T Consensus 357 ~va~~~sn~V~ViD~~t~kl---~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGKL---VAIEDTGGQTPHPG--RGANFVHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp EEEEGGGTEEEEEETTTTEE---EEEEECSSSSBCCT--TCEEEEETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTS
T ss_pred EEEeCCCCeEEEEECCCCcE---EEEEeccCcCCCCc--cceeeECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCE
Confidence 7765 578999999886532 333321 322 2223 5787656766652 1368999999988 67
Q ss_pred EEEEEecCCC-eEEEEEcCCccceeeeccCCccCC---CCeEEEeeCCCC-----cee-eecc--------ccccceeEE
Q 040533 255 CIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGD---GQKLCLWKYPHM-----TKW-GELQ--------HQTSRILEL 316 (364)
Q Consensus 255 ~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~~~~~---~~~i~i~d~~~~-----~~~-~~~~--------~~~~~i~~i 316 (364)
.++++...+. -..+..+|+++++.+..... .+ .+.|.++|+.+. ... ..+. .....+..+
T Consensus 431 vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~--~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (567)
T 1qks_A 431 ILDSFPALGGGSLFIKTHPNSQYLYVDATLN--PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQG 508 (567)
T ss_dssp EEEEEECSCSCCCCEECCTTCSEEEEECTTC--SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEE
T ss_pred EEEEEecCCCCCEEEEeCCCCCeEEEecCCC--CCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEee
Confidence 8888876533 35578999999998864210 11 359999999876 211 2221 123578899
Q ss_pred eecCCCCEEEEEe-----CCCcEEEEEeeCCCCCccee
Q 040533 317 SQSPDGLTVVSAA-----ADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 317 ~~~~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~ 349 (364)
.|+|+|+.+..+. .++.|.|+|.++.+....+.
T Consensus 509 ~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 509 EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 9999999877653 37999999999887766665
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-16 Score=133.02 Aligned_cols=220 Identities=10% Similarity=0.113 Sum_probs=158.5
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-eeeee---------ecCCCcEEEE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LIRNL---------EGHDKRVATA 135 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~v~~~ 135 (364)
.|.+||..+++...... .++-..+..++++|+|+++++...++.|++|+..... .+..+ ..+......+
T Consensus 70 ~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSG-KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CEEEECTTTCCEEEEEC-TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred cEEEEECCCCeEEeccC-CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 69999999888754332 2445678999999999988888888999999976442 44444 2344568999
Q ss_pred EeecCCCCEEEEee-CCCcEEEEEcccCcceeeeeec----------ccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 040533 136 SWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSRINA----------HTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 136 ~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 203 (364)
+++|.++.++++.+ .++.|++|+.. +. ....+.. +-.....++++|+ +.++++...++.|++||..
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~~-g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSPS-GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECTT-SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcCC-CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 99985677777776 68999999943 43 2333321 2234889999998 7777777788999999976
Q ss_pred CCCCCcceEEec--ccccceeEEEEccCCCcEEEeec-----CCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEcC
Q 040533 204 KMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGG-----GTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWNR 272 (364)
Q Consensus 204 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-----g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~ 272 (364)
++ +.+..+. .+...+..++|+| + .++.+.+ ...+..|++||..+++.+..+. .......++++|
T Consensus 227 ~G---~~~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 227 TK---EFVREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp TC---CEEEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred CC---cEEEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 43 3355542 3456788999999 3 3333322 1235689999999999998874 235589999999
Q ss_pred CccceeeeccCCccCCCCeEEEeeCCC
Q 040533 273 HHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
+|..+++... ++.|++|++..
T Consensus 302 dG~lyvad~~------~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 DGTVYIGDAH------TNTVWKFTLTE 322 (329)
T ss_dssp TSEEEEEESS------SCCEEEEEEEE
T ss_pred CCCEEEEECC------CCEEEEEeCCc
Confidence 9966665533 88999999753
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-15 Score=142.24 Aligned_cols=244 Identities=10% Similarity=0.059 Sum_probs=168.8
Q ss_pred eeecccCCCcc-EEEEEe--CC----eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCc---------
Q 040533 47 YSNMMDWGRNN-ILAIAL--GL----ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK--------- 110 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~--~~----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--------- 110 (364)
.+..++|||++ .++.+. +| .|++||+.+++..... +.. ..+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccC--cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 46788999974 454432 23 8999999999876532 212 23678999999999999887765
Q ss_pred -------EEEEecCCccee--eeee--cCCCcEEEEEeecCCCCEEEEeeC-----CCcEEEEEccc------Ccceeee
Q 040533 111 -------LQLWDAETSKLI--RNLE--GHDKRVATASWNHWNGHILTSGSQ-----DKSIINHDVRV------SNNVTSR 168 (364)
Q Consensus 111 -------i~iw~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~------~~~~~~~ 168 (364)
|++|++.+++.. ..+. .+...+..+.|+| ++++|+.++. +..|.+||+.+ +......
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999999887532 2222 2455688999999 8988887764 56899999986 4322444
Q ss_pred eecccCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCC
Q 040533 169 INAHTAEVCGLKWSNEGNLLASGGDD----NLVHVWDHSKMSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
+..+...+.. .|+|+|..|+..+.. +.|.+||+..... .....+..+.. .+..++|++++ .++++.. .+
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~--~~ 356 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSN-FLVLCYL--HD 356 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTT-EEEEEEE--ET
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCC-EEEEEEE--EC
Confidence 5555555554 488888887776653 3699999876531 11234444433 67888998654 6777665 56
Q ss_pred C--eEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 243 G--CIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 243 ~--~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
+ .|.+||+.+++.+..+..+ ..+..+.++|++..++.... +....+.++.||+.+++
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s--s~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT--SFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE--CSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe--CCCCCCEEEEEECCCCc
Confidence 6 4677888778777777654 55788999999877664422 22446899999998876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-14 Score=120.27 Aligned_cols=259 Identities=9% Similarity=0.022 Sum_probs=178.9
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee-eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
+..+...+.++++.++|+++++...++.|.+||.. ++.... ...+...+..+++.+ ++.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-
Confidence 33455679999999999977776667899999988 554322 223456789999998 88888887778889999976
Q ss_pred CcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
+.............+..+++.++++++++...++.|..||. .... ...........+..+++++++ .++++.. .
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~--~~~~~~~~~~~~~~i~~~~~g-~l~v~~~--~ 160 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI--REYELPNKGSYPSFITLGSDN-ALWFTEN--Q 160 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECTTS-CEEEEET--T
T ss_pred CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE--EEecCCCCCCCCceEEEcCCC-CEEEEeC--C
Confidence 33111112224457899999999988887777889999997 3221 111222234568899999998 5665543 5
Q ss_pred CCeEEEEECCCCeEEEE-Ee-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee-ccccccceeEEee
Q 040533 242 DGCIKIWNVQKGTCIHS-VD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILELSQ 318 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~ 318 (364)
++.|..||. +++.... .. ....+..++++++|...++... ++.|.+||. +++.... ...+...+.++++
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII------GNKIGRITT-SGEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC------CceEEEECC-CCcEEEEECCCCCCCceeEEE
Confidence 789999999 6665443 12 2345889999999887665532 788999998 6554322 3334567899999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeCCCCCcce--eccCCceeeeee
Q 040533 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDF--VSHLDGLLSLKV 360 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~v~~~~~ 360 (364)
+++|+++++...++.|..||. +++ ...+ ..+...+.++++
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~ 274 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF 274 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE
T ss_pred CCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe
Confidence 999987777667889999997 332 2222 233456777776
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-15 Score=125.84 Aligned_cols=241 Identities=8% Similarity=0.079 Sum_probs=167.6
Q ss_pred CCCCCceEEEEcCCCCEEEE-------EecCCcEEEEecCCcceeeeee----cCCCcEEEEEeecCC-CCEEEEeeCCC
Q 040533 85 GEDDFPTSISWSQDAKTLAV-------GYMASKLQLWDAETSKLIRNLE----GHDKRVATASWNHWN-GHILTSGSQDK 152 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~l~~~~~dg 152 (364)
..-..+.+++|+++++++++ +..++.|.+||..+++...... ++...+..+++++ + ++++++.. .+
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RL 92 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TT
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CC
Confidence 33456789999999987777 5678899999988877543221 1446789999998 6 66555544 44
Q ss_pred cEEEEEcccCcceeee-eec----ccCcEEEEEEcCCCCEEEEEeCC---------------CeEEEEeCCCCCCCcceE
Q 040533 153 SIINHDVRVSNNVTSR-INA----HTAEVCGLKWSNEGNLLASGGDD---------------NLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~~~~ 212 (364)
.|.+||.. ++. ... ... ....+.+++++++|++.++...+ +.|..+|.. . + ..
T Consensus 93 ~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~-~~ 165 (314)
T 1pjx_A 93 GLLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---Q-MI 165 (314)
T ss_dssp EEEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---C-EE
T ss_pred CEEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C---C-EE
Confidence 78899987 442 222 111 12357899999999877776554 567777754 2 1 22
Q ss_pred EecccccceeEEEEc----cCCCcEEEeecCCCCCeEEEEECC-CCeE-----EEEEecC--CCeEEEEEcCCccceeee
Q 040533 213 RFRDHRAAVKALAWC----PYQFNVLASGGGTQDGCIKIWNVQ-KGTC-----IHSVDTK--AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~-~~~~-----~~~~~~~--~~v~~~~~~~~~~~l~~~ 280 (364)
.+..+......++|+ |+++.++++.. .++.|.+||.. +++. ...+... .....++++++|.+.++.
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 222334456789999 99866777654 57899999986 4542 1222222 457889999999887765
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE-EEeCCCcEEEEEeeCC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV-SAAADETLRFWEAFGP 342 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~vw~~~~~ 342 (364)
.. ++.|.+||..+++.+..+..+...+.+++|+|+|+.|+ +...++.|..|++...
T Consensus 244 ~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 244 WG------SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ET------TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred cC------CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 33 78999999987877777766667899999999999554 4556688999998653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-15 Score=127.45 Aligned_cols=228 Identities=11% Similarity=0.043 Sum_probs=158.2
Q ss_pred cceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 119 SKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
+..+..+..+.....+++|+| +++ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred CCcEEEEecCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence 344455555667788999999 777 8888888999999998865 34455667789999999999988777777899
Q ss_pred EEEeCCCCCCCcceEEecc-cccceeEEEEccCCCcEEEeec--CC-------------CCCeEEEEECCCCeEEEEEec
Q 040533 198 HVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGG--GT-------------QDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~--g~-------------~d~~i~i~d~~~~~~~~~~~~ 261 (364)
.+||..++........... ....+..++++|+|. ++++.. |+ ..+.|..++.. ++.......
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD 170 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC
Confidence 9999765432111111111 123467899999994 666421 00 13467777665 554444444
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-CCce---eeeccccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTK---WGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
......++|+|+++.+++.. .++.|++|++. +++. ...+..+...+..++++++|+++++. ++.|.+|
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDT------GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp CSSEEEEEECTTSCEEEEET------TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCCccEEECCCCCEEEEeC------CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 46678999999999885543 37899999986 4443 22333345567889999999876666 7899999
Q ss_pred EeeCCCCCcceeccCCceeeeeec-c
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVS-P 362 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~s-p 362 (364)
+.. ++.+..+..+.. +.+++|+ |
T Consensus 243 ~~~-g~~~~~~~~~~~-~~~~~f~~~ 266 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT-TSNLCFGGP 266 (296)
T ss_dssp CTT-SCEEEEEECSSC-CCEEEEEST
T ss_pred CCC-CCEEEEEECCCC-ceeEEEECC
Confidence 976 566666666666 8899984 5
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-15 Score=127.72 Aligned_cols=283 Identities=11% Similarity=0.017 Sum_probs=188.4
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecCC----
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGHD---- 129 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~---- 129 (364)
++.|.++|..+++....... + ..+ . ++++|||++++++. .++.|.+||..+++.+..+.-..
T Consensus 58 ~~~V~ViD~~t~~v~~~I~v-G-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDG-G-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEE-C-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CCEEEEEECCCCeEEEEEEC-C-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 57999999999987666553 2 223 4 99999999887775 35789999999999888875321
Q ss_pred ---CcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 130 ---KRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 130 ---~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.....++|+| ++++++++.. ++.|.++|+.+.+. +..+... + . ...+....+.+++.+.||.+.+.++..
T Consensus 134 ~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 134 LVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp CBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred ccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCC
Confidence 2355789999 8998888764 68999999998764 4444321 1 1 222333445677778888888888765
Q ss_pred CCCCcceEEeccc----cccee-EEEEc-cCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEe--------c---CCCe
Q 040533 205 MSSSKCLHRFRDH----RAAVK-ALAWC-PYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVD--------T---KAQI 265 (364)
Q Consensus 205 ~~~~~~~~~~~~~----~~~v~-~~~~~-~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~--------~---~~~v 265 (364)
... ........ ..++. ...|. ++|+.++++ .+|.|.+.|+.++. ....+. . ....
T Consensus 209 ~g~--v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs----~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 209 EGT--PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 282 (386)
T ss_dssp SSC--CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred CCe--EEEeecceeccccccccccceeEcCCCcEEEEe----CCCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence 221 11111111 12221 24554 566444543 47899999997654 333332 0 1233
Q ss_pred EEEEEcCCccceeeeccCC-cc---CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEE-eCCCcEEEEEe
Q 040533 266 CGLEWNRHHKEILSGHGFS-SS---GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSA-AADETLRFWEA 339 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~-~~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~-~~dg~i~vw~~ 339 (364)
..++++++++.++...... .+ ...+.|.++|+.+++.+..+... ..+.++++++|++ +|+++ ..++.|.++|.
T Consensus 283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 4577789988888763200 00 01368999999999999988643 3678999999997 66665 45899999999
Q ss_pred eCCCCCcceeccCCceeeeeeccC
Q 040533 340 FGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+++.++++.. .+.-+.|.++|.
T Consensus 362 ~t~k~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 362 ESGEELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEECC-CCSSCCEEEECC
T ss_pred CCCcEEEEecC-CCCCceeEECCc
Confidence 99998887764 234455666653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-13 Score=114.48 Aligned_cols=271 Identities=10% Similarity=-0.006 Sum_probs=182.9
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee-e
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR-N 124 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~ 124 (364)
...+..++++ +..+. .++.|.+||.. ++... ..+..+...+.++++.+++++.++...++.|..||.. ++... .
T Consensus 22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred cceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec
Confidence 4556666654 44444 46899999988 65543 3333445678999999999877776667889999987 55432 2
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+......+..+++.+ +++++++...++.|..+|.. +.............+..+++.+++++.++...++.|..+|. .
T Consensus 99 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 99 LPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 222346789999998 88888877778899999987 44222222234467899999999987666666788999997 2
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE-e-cCCCeEEEEEcCCccceeeecc
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV-D-TKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
... ...........+..+++++++ .++++.. ..+.|..||. +++..... . ....+.+++++++|...++...
T Consensus 176 g~~--~~~~~~~~~~~~~~i~~d~~g-~l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 176 GKL--EEYPLPTNAAAPVGITSGNDG-ALWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp CCE--EEEECSSTTCCEEEEEECTTS-SEEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred CcE--EEeeCCCCCCCcceEEECCCC-CEEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 221 111122334568899999988 5666543 4678999998 55544332 2 2356889999999986665532
Q ss_pred CCccCCCCeEEEeeCCCCceee-eccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWG-ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
++.|..|+. +++... .+......+.+++++++|++.++.. . .|..++.
T Consensus 250 ------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 250 ------ANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ------TTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ------CCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 689999998 443322 2333345688999999998666554 4 6666665
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-15 Score=142.48 Aligned_cols=259 Identities=10% Similarity=-0.008 Sum_probs=167.7
Q ss_pred cCCCCEEEEEecCC---c--EEEEecCCcceeeeee------cCCCcEEEEEeecCCCCEEE-----EeeCCCcEEEEEc
Q 040533 96 SQDAKTLAVGYMAS---K--LQLWDAETSKLIRNLE------GHDKRVATASWNHWNGHILT-----SGSQDKSIINHDV 159 (364)
Q Consensus 96 s~~~~~l~~~~~dg---~--i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~-----~~~~dg~i~~~d~ 159 (364)
+|+|++++....++ . |.+.+...++....+. +|...+..++||| ++++|+ .|+.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEEC
Confidence 37888888776543 2 4444444444332222 3455789999999 999888 4445568999999
Q ss_pred ccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCe-------------EEEEeCCCCCCC-cceEEecccccceeEE
Q 040533 160 RVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNL-------------VHVWDHSKMSSS-KCLHRFRDHRAAVKAL 224 (364)
Q Consensus 160 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~ 224 (364)
.+++.. ...+... ....++|+|||+.|+.++.|.. |++|++.+.... ..+.....+...+..+
T Consensus 155 ~tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 155 DSGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TTCCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCCcCCcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 987743 1112111 1257899999999999988776 999998765421 2233333455678899
Q ss_pred EEccCCCcEEEeecCC-CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-
Q 040533 225 AWCPYQFNVLASGGGT-QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK- 302 (364)
Q Consensus 225 ~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~- 302 (364)
.|+|+|+.++++.... ....|.+++..+++..........+....+ ++|. ++..... ...++.|.+||+.+++.
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~--~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDE--GAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECT--TCTTCEEEEEBTTBCSGG
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECC--CCCCCEEEEEeCCCCCcc
Confidence 9999998887766410 123778887766655444444445555556 5666 5443221 12368999999987653
Q ss_pred -eeeccc-c-ccceeEEeecCCCCEEEEEeCCCcEEEEEee-CCCCCcceecc-CCceeeeeecc
Q 040533 303 -WGELQH-Q-TSRILELSQSPDGLTVVSAAADETLRFWEAF-GPSGSGDFVSH-LDGLLSLKVSP 362 (364)
Q Consensus 303 -~~~~~~-~-~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~-~~~v~~~~~sp 362 (364)
...+.. + ...+..++|+ ++.++++...|+..++|.+. .++....+..+ .+.+..++++|
T Consensus 309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~ 372 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLE 372 (695)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCT
T ss_pred CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCC
Confidence 233333 3 4567888888 77788999999999998877 34434444444 55677777776
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-15 Score=125.20 Aligned_cols=244 Identities=9% Similarity=0.005 Sum_probs=171.6
Q ss_pred cCCcEEEEecCCcceeeeee------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE
Q 040533 107 MASKLQLWDAETSKLIRNLE------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180 (364)
Q Consensus 107 ~dg~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 180 (364)
.++.|.++|.++++....+. ........+.+. ++.++++...++.|.+||..+.+. +..+. .......++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEE
Confidence 37899999999988765442 122346777774 566667777789999999988774 34443 346688999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccc-----cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR-----AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
++++++.+++...++.|.+||..+.. ....+.... .....+++ ++..++++.. ..++.|.++|+.+++.
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~---~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYE---ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCW-SYQNRILKIDTETDKV 164 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTE---EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEEC-TTCCEEEEEETTTTEE
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCe---EEEEEEcCCccccCCCcceEEE--ECCEEEEEcC-CCCCEEEEEECCCCeE
Confidence 99988544444378999999977643 233333222 14566777 3446666642 1378999999999999
Q ss_pred EEEEecCCCeEEEEEcCCccceeeeccCC----ccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEEeC
Q 040533 256 IHSVDTKAQICGLEWNRHHKEILSGHGFS----SSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~ 330 (364)
+..+........+.++|+|+++++..... ...+.+.|.++|..+++....+... ......++++|++++|+++..
T Consensus 165 ~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 165 VDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 98888777778999999999777654210 0001378999999998877666532 236789999999999988765
Q ss_pred CCcEEEEEeeCCCCCcc--eeccCCceeeeeecc
Q 040533 331 DETLRFWEAFGPSGSGD--FVSHLDGLLSLKVSP 362 (364)
Q Consensus 331 dg~i~vw~~~~~~~~~~--~~~~~~~v~~~~~sp 362 (364)
.|.+||..+++.... +........+++++|
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence 899999988775422 222245688899988
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-13 Score=118.83 Aligned_cols=264 Identities=9% Similarity=-0.013 Sum_probs=178.7
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecC-------
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGH------- 128 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~------- 128 (364)
.|.++|..+++...... .... . .++++|||++++++. .++.|.+||..+.+.+..+...
T Consensus 48 ~v~v~D~~t~~~~~~i~--~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVN--GGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCCeEEEEec--CCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 88999999988754433 2222 3 999999999999885 3578999999998887776532
Q ss_pred CCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeee-eecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSR-INAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 204 (364)
......++|+| ++++|+++.. ++.|.++| .+++. ... +.. .. ++.+.|++ +.+++.+.||.+.++|. .
T Consensus 124 g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 124 GPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred CCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 12345789999 9999888874 47899999 77653 333 322 22 24445544 45666778999999998 5
Q ss_pred CCCCcceEEec-----ccccc-eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEec-----------CCCe
Q 040533 205 MSSSKCLHRFR-----DHRAA-VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVDT-----------KAQI 265 (364)
Q Consensus 205 ~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~-----------~~~v 265 (364)
... ..... ....+ .....+.+++..++... ..+.+.+.|+.++. .+..+.. ....
T Consensus 196 g~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 269 (373)
T 2mad_H 196 GGA---AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW 269 (373)
T ss_pred CcE---EEEEeccccccCCcceeecceeEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCce
Confidence 432 21111 11112 12345666665555543 47899999997652 2233321 1223
Q ss_pred EEEEEcCCccceeeeccCCc----cCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEe-CCCcEEEEEe
Q 040533 266 CGLEWNRHHKEILSGHGFSS----SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAA-ADETLRFWEA 339 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~----~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~i~vw~~ 339 (364)
..+.++|+++.+++...-.. ....+.|.++|..+++.+.++... ....+++|+|||+ +++++. .++.|.++|+
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 44788999888877532100 002468999999999999888643 3578999999999 788877 5899999999
Q ss_pred eCCCCCcce
Q 040533 340 FGPSGSGDF 348 (364)
Q Consensus 340 ~~~~~~~~~ 348 (364)
.+.+.+..+
T Consensus 349 ~t~~vv~~i 357 (373)
T 2mad_H 349 GAGDQDQST 357 (373)
T ss_pred CCCCEEeee
Confidence 999888773
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-15 Score=121.86 Aligned_cols=239 Identities=7% Similarity=-0.022 Sum_probs=160.0
Q ss_pred eeecccCCCcc-EEE-E-EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGRNN-ILA-I-ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~-~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
....+++++++ +++ + ..++.|.+|+..+...... . ..+...+.+++++++|+++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-P-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-C-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-e-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 45667777754 444 3 4568999999766543221 1 13345688999999998666655 8899999987654332
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
........+..++++| +++++++...++.|.+|+..+.... .........+.+++++++++++++...++.|.+||..
T Consensus 102 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 2222335789999999 8888887777889999976544321 1122223457889999999877777777899999976
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeecc
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 282 (364)
.... ......+...+.++++++++ .++++.. .++.|.+||............ ...+.+++++++|+.+++...
T Consensus 180 ~~~~---~~~~~~~~~~p~~i~~d~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 180 SNNQ---VVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp TCCE---EECCCSSCCSEEEEEECTTC-CEEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred CCce---EeecccCCCCceEEEECCCC-CEEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 5321 11112223567899999998 6666654 578999999876544332222 256899999999986666544
Q ss_pred CCccCCCCeEEEeeCCCCce
Q 040533 283 FSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~ 302 (364)
++.|+++++...+.
T Consensus 254 ------~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 254 ------NDRVVKLTSLEHHH 267 (270)
T ss_dssp ------GTEEEEECCCGGGS
T ss_pred ------CCEEEEEcCCCccc
Confidence 89999999876543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-13 Score=113.65 Aligned_cols=259 Identities=9% Similarity=0.016 Sum_probs=177.4
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee-eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR-NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
......+.++++.++|++.++...++.|.+||.. ++... .+......+..+++.+ ++.++++...++.|..+|.. +
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-C
Confidence 3445678999999999987777678999999987 55433 2223346789999998 88888777777889999987 4
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
.............+.++++.++++++++...++.|..+|.. ... ....+......+..+++.+++. ++++.. .+
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~--~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~ 166 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI--YEYDLPNKGSYPAFITLGSDNA-LWFTEN--QN 166 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE--EEEECSSTTCCEEEEEECTTSS-EEEEET--TT
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE--EEccCCCCCCCceeEEECCCCC-EEEEec--CC
Confidence 43222222234678999999999888777668899999865 221 1112222345688999999985 665543 47
Q ss_pred CeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee-ccccccceeEEee
Q 040533 243 GCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILELSQ 318 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~ 318 (364)
+.|..+|. +++... +.. ...+..++++++|...++... .+.|.+|+. +++.... +..+...+.++++
T Consensus 167 ~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 167 NSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIM------GNKIGRITT-TGEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp TEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred CeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccC------CCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence 88999998 555443 322 245889999999976665532 678999998 4443332 3334566889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeCCCCCcce--eccCCceeeeeecc
Q 040533 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDF--VSHLDGLLSLKVSP 362 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~v~~~~~sp 362 (364)
+++|++.++...++.|..|+. +++. ..+ ......+.++++.|
T Consensus 238 d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~ 281 (300)
T 2qc5_A 238 GKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGK 281 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECT
T ss_pred CCCCCEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCC
Confidence 999987777667789999987 3322 222 12234566666655
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-15 Score=139.17 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=158.5
Q ss_pred CCCCceEEEEcCCCCEEEEEecC-----CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCc-------
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKS------- 153 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~------- 153 (364)
|...+..++|||||++||.+..+ ..|++||+.+++.+.... +...+..++|+| + +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC-------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccc
Confidence 33468899999999999987654 359999999998765321 222235789999 7 87777776554
Q ss_pred -------EEEEEcccCcc---eeeeeecccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCCcceEEecccc
Q 040533 154 -------IINHDVRVSNN---VTSRINAHTAEVCGLKWSNEGNLLASGGDDN-----LVHVWDHSKMSSSKCLHRFRDHR 218 (364)
Q Consensus 154 -------i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~ 218 (364)
|++|++.++.. ++.....+...+..+.|+|||++|+..+.++ .|++||+..+.. +....+..+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTALIPDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEEECSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEecCCC
Confidence 88999876542 1222222334588999999999888877543 899999865411 1133444444
Q ss_pred cceeEEEEccCCCcEEEeec-CCCCCeEEEEECCCC--eEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 219 AAVKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKG--TCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 219 ~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
..+.... +|++..+++... +..++.|.+||+.++ +....+... ..+..+.++ ++..+++... ++..++
T Consensus 317 ~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~------dg~~~l 388 (741)
T 1yr2_A 317 KAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIH------DAKSQV 388 (741)
T ss_dssp SSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEE------TTEEEE
T ss_pred CceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEE------CCEEEE
Confidence 4444443 478877766543 112567999999874 333334333 335667777 4445555432 666666
Q ss_pred eeCC-CCceeeeccc-cccceeEEeecCCCCEEEEE----eCCCcEEEEEeeCCC
Q 040533 295 WKYP-HMTKWGELQH-QTSRILELSQSPDGLTVVSA----AADETLRFWEAFGPS 343 (364)
Q Consensus 295 ~d~~-~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~----~~dg~i~vw~~~~~~ 343 (364)
|.+. +++....+.. +...+..+.++|+++.|+.. ...++|++||+.+++
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6543 4555666654 35678899999998866532 335789999987654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-14 Score=117.09 Aligned_cols=211 Identities=12% Similarity=0.075 Sum_probs=154.1
Q ss_pred CCccEE-EEEeCCeEEEEECCCCceeeeeeecCCC-CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC-CC
Q 040533 54 GRNNIL-AIALGLELYLWKQENGEVQKLLKVTGED-DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH-DK 130 (364)
Q Consensus 54 ~~~~~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~ 130 (364)
+|++++ +++.++.|++||.++++..-.+. .+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+ ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYP--LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEE--CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeC--CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 455554 44568999999998998754443 443 4689999999999888 34678999998 89999888865 35
Q ss_pred cEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcceeeeee------cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 131 RVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNNVTSRIN------AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+.++.+.| +++++++.+. ++.+..+|.. ++. +..+. .+......+++.++|+++++...++.|..||..
T Consensus 78 ~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 78 EMQTARILP-DGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEEECT-TSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred cccccEECC-CCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 788999999 9999998887 7777777753 432 22222 122234556788999999999999999999965
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-------CCeEEEEEcCCccc
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------AQICGLEWNRHHKE 276 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------~~v~~~~~~~~~~~ 276 (364)
+ +.+.++... ..+.++...+++. +++++. .++.|..+|..+++.+..+... ..+..+...++|..
T Consensus 155 -G---~~~w~~~~~-~~~~~~~~~~~g~-~~v~~~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 155 -G---QLLNSVKLS-GTPFSSAFLDNGD-CLVACG--DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp -S---CEEEEEECS-SCCCEEEECTTSC-EEEECB--TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred -C---CEEEEEECC-CCccceeEcCCCC-EEEEeC--CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 3 446666543 4566778888884 555543 5778999999999999888632 12567777777776
Q ss_pred eeee
Q 040533 277 ILSG 280 (364)
Q Consensus 277 l~~~ 280 (364)
+++.
T Consensus 227 ~v~~ 230 (276)
T 3no2_A 227 YICN 230 (276)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-14 Score=135.69 Aligned_cols=243 Identities=12% Similarity=0.041 Sum_probs=159.7
Q ss_pred ceeecccCCCcc-EEEEEeC------CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCc--------
Q 040533 46 YYSNMMDWGRNN-ILAIALG------LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK-------- 110 (364)
Q Consensus 46 ~~~~~~~~~~~~-~~~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------- 110 (364)
..+..++|||++ .++.+.+ ..|++||+.+++..... . +...+..++|+|| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-L--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-E--EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-C--CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 357788999974 5554432 36999999999875431 1 1222457899999 99988876554
Q ss_pred ------EEEEecCCcce--eeeee--cCCCcEEEEEeecCCCCEEEEeeCCC-----cEEEEEcccCcce-eeeeecccC
Q 040533 111 ------LQLWDAETSKL--IRNLE--GHDKRVATASWNHWNGHILTSGSQDK-----SIINHDVRVSNNV-TSRINAHTA 174 (364)
Q Consensus 111 ------i~iw~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~-~~~~~~~~~ 174 (364)
|++|++.++.. ...+. .+...+..+.|+| ++++|+..+.++ .|++||+.++... ...+..+..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 89999877652 22222 2334588999999 998888777544 8999999876222 333444444
Q ss_pred cEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 175 EVCGLKWSNEGNLLASGGDD----NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
.+.... +|+++.|+..+.+ +.|.+||+.... ......+..+...+..++|. +..++++.. .|+..++|.+
T Consensus 318 ~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~--~dg~~~l~~~ 391 (741)
T 1yr2_A 318 AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA--GNRLFASYI--HDAKSQVLAF 391 (741)
T ss_dssp SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE--BTEEEEEEE--ETTEEEEEEE
T ss_pred ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE--CCEEEEEEE--ECCEEEEEEE
Confidence 455443 4888888887753 459999987642 12223333444556677776 346777765 6777666654
Q ss_pred C-CCeEEEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 251 Q-KGTCIHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 251 ~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
. +++....+.. ...+..+.++|++..++.... +....+.|++||+.+++
T Consensus 392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s--s~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS--SFTQPATVLALDPATAK 443 (741)
T ss_dssp ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE--ETTEEEEEEEEETTTTE
T ss_pred eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc--CCCCCCEEEEEECCCCc
Confidence 3 4555666653 456888999999987764421 12336889999998876
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-13 Score=119.66 Aligned_cols=238 Identities=10% Similarity=0.039 Sum_probs=163.9
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcce
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNV 165 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~ 165 (364)
..+..++|+++++++++...++.|++||.+++......... .... ++|+| +++.|+++..++ .|.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce-
Confidence 46789999999997777777789999999887766555543 3334 99999 888888888766 788888765543
Q ss_pred eeee----ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE--ecccccce-e-EEEEccCCCcEEEee
Q 040533 166 TSRI----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR--FRDHRAAV-K-ALAWCPYQFNVLASG 237 (364)
Q Consensus 166 ~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v-~-~~~~~~~~~~~~~~~ 237 (364)
...+ ......+.+++++|++..|+.+..++.|+.||...... ..+.. ..+....- . .++|+|++..++++.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 2222 11445678899999555566677788999999775421 11100 11122222 3 899999766788876
Q ss_pred cCCCCCeEEEEECCCCeEEEEEecC---------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVDTK---------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
. .++.|+.|+.... ........ .....++++++|.++++-. ..++.|+.|++.++..
T Consensus 286 ~--~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-----~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 286 Q--NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-----FKGYCLRKLDILDGYV 357 (409)
T ss_dssp T--TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-----TTTCEEEEEETTTTEE
T ss_pred C--CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-----CCCCEEEEEECCCCEE
Confidence 5 6889999997644 22222211 2478899999998665543 0388999999877654
Q ss_pred eeecccc---------------ccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 303 WGELQHQ---------------TSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 303 ~~~~~~~---------------~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
..+.++ -.....++++++|.++++-..++.|+.+++
T Consensus 358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 333332 245789999999888888888889988875
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-14 Score=120.87 Aligned_cols=270 Identities=9% Similarity=0.022 Sum_probs=182.4
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecC------
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGH------ 128 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~------ 128 (364)
+.|.++|..+++....+... .. . .++++||+++|+++. .++.|.++|..+++.+..+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG--~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGG--FL-P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEEC--SS-C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEEEEEEECC--CC-C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 69999999999987666652 22 3 899999999888875 3678999999999988877532
Q ss_pred -CCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q 040533 129 -DKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 129 -~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 204 (364)
......+.|+| ++++++++.. ++.|.+.|+.+.+. +..+... . . ....|++ ..+++.+.||.+.+.+...
T Consensus 175 ~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~-g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 175 VGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVP-D-C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp BSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S-E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred cCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcC-C-c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 12345789999 9998888764 57899999987764 3333321 1 1 2223332 4556666777777777633
Q ss_pred CCCCcce-EEecccccc-eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEEec-----------CCCeEEEE
Q 040533 205 MSSSKCL-HRFRDHRAA-VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSVDT-----------KAQICGLE 269 (364)
Q Consensus 205 ~~~~~~~-~~~~~~~~~-v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~-----------~~~v~~~~ 269 (364)
....... ..+.....+ ...+.+.+++..++++. ..+.+.+.|+..+... ..+.. ......++
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va 325 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA 325 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeE
Confidence 2210000 011111111 12356788887777765 4789999998765432 11111 01122378
Q ss_pred EcCCccceeeeccCC-cc---CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEe-CCCcEEEEEeeCCC
Q 040533 270 WNRHHKEILSGHGFS-SS---GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAA-ADETLRFWEAFGPS 343 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~-~~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~i~vw~~~~~~ 343 (364)
++|+++.+++..... .+ ..++.|.++|..+.+.+.++.... ....+.|+|||+ +++++. .++.|.++|+.+.+
T Consensus 326 ~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 326 YHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 999998887764210 00 014689999999999999886433 478999999999 888887 58999999999999
Q ss_pred CCcce
Q 040533 344 GSGDF 348 (364)
Q Consensus 344 ~~~~~ 348 (364)
.++++
T Consensus 405 vv~tI 409 (426)
T 3c75_H 405 ELRSV 409 (426)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88776
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-13 Score=111.09 Aligned_cols=227 Identities=11% Similarity=0.111 Sum_probs=155.6
Q ss_pred CCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 87 DDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 87 ~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
.....+..|+|++. ++++...++.|..||..+++. ..+. ....+.+++++| +++++++ . +..|.+||..++..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~- 85 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSA- 85 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEE-
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcE-
Confidence 34456889999654 556666788999999987765 3333 456799999999 8885554 3 56799999876542
Q ss_pred eeeeec----ccCcEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 166 TSRINA----HTAEVCGLKWSNEGNLLASGGDD---------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 166 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
...... ....++.++++|+|+++++.... ..-.+|.+.... + ...+.........++|+|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~-~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH--H-VKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS--C-EEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC--C-EEEEeeccccccceEEcCCCCE
Confidence 211111 12457899999999966654321 223444433221 1 2223333445678999999987
Q ss_pred EEEeecCCCCCeEEEEEC--CCCeEE--EEE---e-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee
Q 040533 233 VLASGGGTQDGCIKIWNV--QKGTCI--HSV---D-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~--~~~~~~--~~~---~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~ 304 (364)
++++.. .++.|.+||+ .++... +.+ . .......++++++|.+.++... ++.|..||..+++.+.
T Consensus 163 lyv~~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~------~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 163 FYYIDS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN------GGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEEEG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET------TTEEEEECTTTCCEEE
T ss_pred EEEecC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC------CCEEEEEcCCCceEEE
Confidence 877765 6889999987 455432 122 1 1245788999999987776543 6789999999999998
Q ss_pred eccccccceeEEeec-CCCCEEEEEeC
Q 040533 305 ELQHQTSRILELSQS-PDGLTVVSAAA 330 (364)
Q Consensus 305 ~~~~~~~~i~~i~~~-~~~~~l~~~~~ 330 (364)
.+..+...+++++|. |+++.|+.++.
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 888777789999998 88887766543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-12 Score=112.08 Aligned_cols=245 Identities=5% Similarity=-0.083 Sum_probs=166.2
Q ss_pred cccCCCcc-EEEEEe-----------CCeEEEEECCCCceeeeeeecC-----CCCCceEEEEcCCCCEEEEEec--CCc
Q 040533 50 MMDWGRNN-ILAIAL-----------GLELYLWKQENGEVQKLLKVTG-----EDDFPTSISWSQDAKTLAVGYM--ASK 110 (364)
Q Consensus 50 ~~~~~~~~-~~~~~~-----------~~~i~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~--dg~ 110 (364)
.+.++|++ .+.++. ++.|.+||..+.+......+.+ +......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 67788864 444432 5789999999887765554421 0134568999999999998874 478
Q ss_pred EEEEecCCcceeee-eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee----ecccCcE-EEEEEcCC
Q 040533 111 LQLWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI----NAHTAEV-CGLKWSNE 184 (364)
Q Consensus 111 i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~v-~~~~~~~~ 184 (364)
|.++| ++++.+.. +.. ... +.+.|.....+++.+.||.+.++|. +++...... .....++ ....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~-~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS-PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCC-Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99988877 653 222 4455635567777888999999999 665431111 0111221 23456666
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecc----------cccceeEEEEccCCCcEEEeecCC-------CCCeEEE
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD----------HRAAVKALAWCPYQFNVLASGGGT-------QDGCIKI 247 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~-------~d~~i~i 247 (364)
+..++..+..+.+.+.|+..... ..+..+.. .......+.++|+++.++++.... ..+.|.+
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 65555555788999999864321 11222211 122244578999998877764200 1368999
Q ss_pred EECCCCeEEEEEecCCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 248 WNVQKGTCIHSVDTKAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 248 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
+|+.+++.+..+........+.|+|+|+ .++++. ..++.|.++|..+++.+..+
T Consensus 303 ID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~-----~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 303 VTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS-----AGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc-----CCCCeEEEEECCCCCEEeee
Confidence 9999999999998888899999999999 666653 23799999999999998874
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-13 Score=116.14 Aligned_cols=259 Identities=11% Similarity=0.040 Sum_probs=175.5
Q ss_pred ccCCCcc--EEEEE----------eCCeEEEEECCCCceeeeeeecC-----CCCCceEEEEcCCCCEEEEEec--CCcE
Q 040533 51 MDWGRNN--ILAIA----------LGLELYLWKQENGEVQKLLKVTG-----EDDFPTSISWSQDAKTLAVGYM--ASKL 111 (364)
Q Consensus 51 ~~~~~~~--~~~~~----------~~~~i~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~--dg~i 111 (364)
+.++|++ ++++. .++.|.+||..+++......+.. .......++|+|||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 6677754 43433 25789999999998876665532 1235778999999999988864 6899
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc----cCcEE-EEEEc-CCC
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH----TAEVC-GLKWS-NEG 185 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~v~-~~~~~-~~~ 185 (364)
.++|+.+++.+.++.... . ...+ |...+.+++.+.||.+.+.++............+ ..++. ...|. ++|
T Consensus 163 sVID~~t~~vv~tI~v~g-~--~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD-C--YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEETTTTEEEEEEECCS-E--EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEECCCCcEEEEEECCC-c--ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 999999999998886422 1 2223 4366777788889999999987633322211111 12221 23554 577
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEec----------ccccceeEEEEccCCCcEEEeec----CC---CCCeEEEE
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFR----------DHRAAVKALAWCPYQFNVLASGG----GT---QDGCIKIW 248 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~----g~---~d~~i~i~ 248 (364)
++++ .+.+|.|++.|+..... +.+..+. -.......++++|+++.++++.. ++ ..+.|.++
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi 316 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGDA-KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 316 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSSC-EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred cEEE-EeCCCEEEEEECCCCcc-eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence 5444 56689999999865431 1122221 01234456788999888888642 00 13679999
Q ss_pred ECCCCeEEEEEecCCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCC
Q 040533 249 NVQKGTCIHSVDTKAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 249 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
|+.+++.+..+.....+..+.++++++ +|+++. ..++.|.++|..+++.+.++..... -..+.+++|
T Consensus 317 D~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn-----~~~~~VsViD~~t~k~~~~i~~~~~-p~~l~~s~d 384 (386)
T 3sjl_D 317 DAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS-----TGDKTLYIHDAESGEELRSVNQLGH-GPQVITTAD 384 (386)
T ss_dssp ETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEE-----TTTTEEEEEETTTCCEEEEECCCCS-SCCEEEECC
T ss_pred ECCCCeEEEEEECCCCcceEEECCCCCeEEEEEc-----CCCCeEEEEECCCCcEEEEecCCCC-CceeEECCc
Confidence 999999999998888899999999997 566643 2389999999999999988864432 345666655
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-12 Score=108.65 Aligned_cols=221 Identities=8% Similarity=-0.004 Sum_probs=150.3
Q ss_pred ceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee
Q 040533 90 PTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 90 v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 168 (364)
..+.+|+|++. ++++...++.|..||.++++.. .+. ....+.+++|+| +++++++. .+ .|.+||..++.. ...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~-~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVL-TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCE-EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcE-EEE
Confidence 45788999754 5566667889999999877543 333 356799999999 88877654 44 499999876652 211
Q ss_pred eec----ccCcEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 169 INA----HTAEVCGLKWSNEGNLLASGGD------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 169 ~~~----~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
... ....+..++++|+|+++++... .+.|..++ .. + ...+.........++|+|+++.++++..
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g---~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG---K-VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT---E-EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC---c-EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 111 1235889999999987665432 24566665 22 1 2222233345678999999977777654
Q ss_pred CCCCCeEEEEECC--CC-e-----EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 239 GTQDGCIKIWNVQ--KG-T-----CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 239 g~~d~~i~i~d~~--~~-~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
.++.|.+||+. ++ . ....+. .......++++++|.+.++... ++.|..|+. +++.+..+..+
T Consensus 199 --~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~------~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 199 --KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG------EGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp --TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET------TTEEEEECT-TCCEEEEEECS
T ss_pred --CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC------CCEEEEECC-CCCEEEEEECC
Confidence 67899999986 55 3 122222 1245678999999987766533 678999998 67777777767
Q ss_pred ccceeEEeec-CCCCEEEEEeCC
Q 040533 310 TSRILELSQS-PDGLTVVSAAAD 331 (364)
Q Consensus 310 ~~~i~~i~~~-~~~~~l~~~~~d 331 (364)
...+++++|+ ++++.|+.++..
T Consensus 270 ~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 270 GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCcEEEEEecCCCCEEEEEecC
Confidence 6779999998 888877555443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-13 Score=110.84 Aligned_cols=220 Identities=11% Similarity=0.125 Sum_probs=151.2
Q ss_pred CCCcEEEEEeecCCCCEEEE-------eeCCCcEEEEEcccCcceeeee---ecccCcEEEEEEcCC-CCEEEEEeCCCe
Q 040533 128 HDKRVATASWNHWNGHILTS-------GSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGLKWSNE-GNLLASGGDDNL 196 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~-------~~~dg~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~d~~ 196 (364)
.-....+++|++ ++.++++ +..++.|.+||..+++...... .++...+.+++++++ ++++++ +..+.
T Consensus 16 ~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred cCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 334568899998 8888888 6778899999987665321111 124467899999999 765544 44457
Q ss_pred EEEEeCCCCCCCcceEEe-c-----ccccceeEEEEccCCCcEEEeecCCCC---------------CeEEEEECCCCeE
Q 040533 197 VHVWDHSKMSSSKCLHRF-R-----DHRAAVKALAWCPYQFNVLASGGGTQD---------------GCIKIWNVQKGTC 255 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~~~~~~~g~~d---------------~~i~i~d~~~~~~ 255 (364)
|.+||.. .. ...+ . .....+.++++++++. ++++.. .+ +.|..||.. ++.
T Consensus 94 l~~~d~~-g~----~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 94 LLVVQTD-GT----FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAP--AGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp EEEEETT-SC----EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEEC--BCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred EEEEeCC-CC----EEEEEeccCCCccccCCcCEEECCCCC-EEEEec--CcccccccccccccCCCCeEEEECCC-CCE
Confidence 9999976 32 2222 1 1123578999999985 555442 23 578888876 555
Q ss_pred EEEEecCCCeEEEEEc----CCccceeeeccCCccCCCCeEEEeeCC-CCc-----eeeeccccc-cceeEEeecCCCCE
Q 040533 256 IHSVDTKAQICGLEWN----RHHKEILSGHGFSSSGDGQKLCLWKYP-HMT-----KWGELQHQT-SRILELSQSPDGLT 324 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~----~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~-----~~~~~~~~~-~~i~~i~~~~~~~~ 324 (364)
............++++ |+++.++.+. ..++.|.+|+.. +++ ....+..+. ..+..++++++|++
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~-----~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAE-----TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEEEE-----TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEEEE-----CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 4444444557889999 9997665543 227899999976 343 223344443 56788999999998
Q ss_pred EEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 325 VVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 325 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++...++.|.+||..+++....+..+...+.+++|+|.
T Consensus 240 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~d 278 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQ 278 (314)
T ss_dssp EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTT
T ss_pred EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCC
Confidence 888878899999998867776666666678899999874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=128.00 Aligned_cols=245 Identities=13% Similarity=0.096 Sum_probs=159.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEec-----CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC-------
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYM-----ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK------- 152 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------- 152 (364)
++...+..++|||||++||.+.. ...|++||+++++.+.... .......++|+ +++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL--GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE--TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe--CCCEEEEEEecCccccccc
Confidence 45557888999999999986542 2469999999998654311 11113567898 667677766663
Q ss_pred ------cEEEEEcccCcc---eeeeeec-ccCcEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCCCCcceEEecccc
Q 040533 153 ------SIINHDVRVSNN---VTSRINA-HTAEVCGLKWSNEGNLLASGGD----DNLVHVWDHSKMSSSKCLHRFRDHR 218 (364)
Q Consensus 153 ------~i~~~d~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~ 218 (364)
.|++|++.+... .+..... |......+.|+|||++|+.... +..|+++|+..+.. ....+..+.
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~--~~~~l~~~~ 280 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA--PLLTVQGDL 280 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC--CCEEEECSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC--ceEEEeCCC
Confidence 399999876653 2222223 4455788999999998765432 35899999876431 234444455
Q ss_pred cceeEEEEccCCCcEEEeec-CCCCCeEEEEECCCCeE---EEEEecCCCeEEEEEcCCccceeeeccCCccCCCC--eE
Q 040533 219 AAVKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKGTC---IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ--KL 292 (364)
Q Consensus 219 ~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i 292 (364)
...... |++++..+++... +...+.|..+|+.++.. .....+...+. .|+++++.|+.... .++ .|
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~-----~~g~~~l 352 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM-----VDATARV 352 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE-----ETTEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE-----ECCeeEE
Confidence 555444 6667767766653 11247899999988654 22233333443 88999988876542 133 68
Q ss_pred EEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCC----CcEEEEEeeCCC
Q 040533 293 CLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAAD----ETLRFWEAFGPS 343 (364)
Q Consensus 293 ~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d----g~i~vw~~~~~~ 343 (364)
++|++..+ ....+. ...+.+..+.+++++..|+....+ +.|+.||+.+++
T Consensus 353 ~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 99998744 344443 244567888889988877665444 789999987654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-14 Score=119.70 Aligned_cols=174 Identities=13% Similarity=0.041 Sum_probs=130.0
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCc---------eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGE---------VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
.++.+++++. ++++++....+.+|+++..+ ....... .+.. |+.++| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 4788888885 57777777788889976543 2222222 3556 999999 99999999 8899999999
Q ss_pred CCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCe
Q 040533 117 ETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
.+.........|..++.++.+.+ . .+++++.||.|.+||+..+.. .. +...|++++|+|+| ++.|..||.
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred hhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence 88776666777888899888765 3 288899999999999986653 21 45689999999999 678899999
Q ss_pred EEEEeCCCCCCCcceEEe------c---ccccceeEEEEccCCCcEEEe
Q 040533 197 VHVWDHSKMSSSKCLHRF------R---DHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~------~---~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+++|+....... ....+ . +|...|.++.|.+++.++++-
T Consensus 184 i~~~~~~~~~~~-~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 184 FQSFAWRNGEME-KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEEETTEEE-EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCCcccc-ccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999986543210 02223 2 367889999999988655553
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-12 Score=108.65 Aligned_cols=227 Identities=10% Similarity=0.103 Sum_probs=154.7
Q ss_pred CCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
..........|+|+++ +++++..++.|..|+. +++ ...+..+...+..+++++ +++++++...++.|.+|+.. +.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CC
Confidence 3455677899999998 5666767889999997 454 345555667789999999 88877766666789999975 33
Q ss_pred ceeeeeecc----cCcEEEEEEcCCCCEEEE----EeC-------------CCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 164 NVTSRINAH----TAEVCGLKWSNEGNLLAS----GGD-------------DNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 164 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
........ ...++.++++++|++.++ |.. .+.|..+|...+.. ..+. ......
T Consensus 118 -~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~----~~~~-~~~~p~ 191 (305)
T 3dr2_A 118 -AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL----QRMA-DLDHPN 191 (305)
T ss_dssp -EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC----EEEE-EESSEE
T ss_pred -EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE----EEEe-cCCCCc
Confidence 12211111 134678999999998876 332 25677787644332 2222 334567
Q ss_pred EEEEccCCCcEEEeecCCC-----CCeEEEEECCCCeEE--EEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEE
Q 040533 223 ALAWCPYQFNVLASGGGTQ-----DGCIKIWNVQKGTCI--HSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~-----d~~i~i~d~~~~~~~--~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 293 (364)
.++|+|+++.++++.. . .+.|.+|++..+... ..+. .......++++++|++.++. .+.|.
T Consensus 192 gl~~spdg~~lyv~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--------~~gv~ 261 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQT--PEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--------GTGVC 261 (305)
T ss_dssp EEEECTTSSEEEEEEC--CC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--------SSEEE
T ss_pred ceEEcCCCCEEEEEec--CCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--------CCcEE
Confidence 8999999976776653 2 278999998765411 1111 12345678999999955543 34599
Q ss_pred EeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCc
Q 040533 294 LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 294 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
+|+. +++.+..+..+. .+.+++|+++++.|+.++.++.
T Consensus 262 ~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 262 VFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred EECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 9997 577777766554 5889999999988888877643
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-14 Score=118.93 Aligned_cols=173 Identities=6% Similarity=0.042 Sum_probs=128.8
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---------eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIINHDVRVSNN---------VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
+++.+++++ ...++++|+.++ +.+|++..... .......+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999 888999999885 55698764331 1112234566 999999 88999998 789999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
++.... ......+...+.++.+.+. .+++. . .||.|.+||+.++.... ....|.+++|+|+| ++.|.
T Consensus 113 v~sl~~---~~~~~~~~~~v~~i~~~~p--~~av~-~--~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 113 LEELSE---FRTVTSFEKPVFQLKNVNN--TLVIL-N--SVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp SSSTTC---EEEEEECSSCEEEEEECSS--EEEEE-E--TTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred chhhhc---cCccceeecceeeEEecCC--CEEEE-E--CCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence 987654 3334455667888777654 34443 3 69999999999887654 34579999999999 34443
Q ss_pred cCCccCCCCeEEEeeCCCCce--eeec------c---ccccceeEEeecCCCCEEEEE
Q 040533 282 GFSSSGDGQKLCLWKYPHMTK--WGEL------Q---HQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~--~~~~------~---~~~~~i~~i~~~~~~~~l~~~ 328 (364)
. ||.+++|+....+. ..++ . +|...|.+|.|.+++.++++-
T Consensus 180 ~------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 180 K------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp T------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred c------CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 3 99999998877664 4444 2 367889999999999988873
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-12 Score=106.70 Aligned_cols=224 Identities=11% Similarity=0.056 Sum_probs=150.7
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
...-..+..|+|.++.++++...++.|..||..++.. ..+ .....+.+++++++++++++ . ++.|.+||..+...
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3445567899995566777777889999999886653 222 34567999999999995554 4 56799999765432
Q ss_pred CcceEEecc--cccceeEEEEccCCCcEEEeecC--------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccce
Q 040533 208 SKCLHRFRD--HRAAVKALAWCPYQFNVLASGGG--------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI 277 (364)
Q Consensus 208 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g--------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l 277 (364)
+.+..... ....+..++++|+|..++.+... ...+.|..++.. ++.............++|+|+++.+
T Consensus 86 -~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 86 -VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp -EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEE
T ss_pred -EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEE
Confidence 11211111 12357889999999644433220 012345555543 4443333334557899999999877
Q ss_pred eeeccCCccCCCCeEEEeeC--CCCce-----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 278 LSGHGFSSSGDGQKLCLWKY--PHMTK-----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~--~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+... ..++.|.+|++ .++.. ...+..+......++++++|++.++...++.|..||..+++.+..+..
T Consensus 164 yv~~-----~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 164 YYID-----SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEE-----GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred EEec-----CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 6543 22688999987 44442 223333445678999999998888877788999999988888888877
Q ss_pred cCCceeeeeec-cC
Q 040533 351 HLDGLLSLKVS-PI 363 (364)
Q Consensus 351 ~~~~v~~~~~s-p~ 363 (364)
+...+++++|+ |.
T Consensus 239 p~~~~t~~~f~g~d 252 (297)
T 3g4e_A 239 PVDKTTSCCFGGKN 252 (297)
T ss_dssp SSSBEEEEEEESGG
T ss_pred CCCCceEEEEeCCC
Confidence 77789999998 53
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-12 Score=111.22 Aligned_cols=246 Identities=9% Similarity=0.009 Sum_probs=169.3
Q ss_pred cccCCCcc--EEEEE----------eCCeEEEEECCCCceeeeeeecCC-----CCCceEEEEcCCCCEEEEEec--CCc
Q 040533 50 MMDWGRNN--ILAIA----------LGLELYLWKQENGEVQKLLKVTGE-----DDFPTSISWSQDAKTLAVGYM--ASK 110 (364)
Q Consensus 50 ~~~~~~~~--~~~~~----------~~~~i~iw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~ 110 (364)
.+.++|++ ++++. .++.|.++|..+++......+.+. ......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 56677753 44433 357899999999988766665311 235678999999999998864 578
Q ss_pred EEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee----eecccCcE-EEEEEcCCC
Q 040533 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR----INAHTAEV-CGLKWSNEG 185 (364)
Q Consensus 111 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~v-~~~~~~~~~ 185 (364)
|.+.|+.+++.+..+.... . ....|.....+++.+.||.+.+.+..+++. ... +.....++ ..+.+.+++
T Consensus 202 VsVID~~t~kvv~~I~v~g-~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD-C---YHIFPASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EEEEETTTTEEEEEEECCS-E---EEEEEEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCSCTTSCBCSCCEECTTT
T ss_pred EEEEECCCCeEEEEEEcCC-c---eeeccCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeeccCCCceeeEeeecCCC
Confidence 9999999999988877422 1 233442446667777888888888743332 211 11111121 235678888
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEec----------ccccceeEEEEccCCCcEEEeecC----C---CCCeEEEE
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFR----------DHRAAVKALAWCPYQFNVLASGGG----T---QDGCIKIW 248 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~g----~---~d~~i~i~ 248 (364)
..++.....+.|.+.|+..... ..+..+. ........++++|++..++++... + .++.|.++
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCce-EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence 8877778889999999754321 1111110 011222347899998888876420 0 14689999
Q ss_pred ECCCCeEEEEEecCCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 249 NVQKGTCIHSVDTKAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 249 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
|+.+.+.+..+........+.|+|+|+ .+++.. ..++.|.++|..+++.+.++
T Consensus 356 D~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n-----~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 356 NAETGERINKIELGHEIDSINVSQDAEPLLYALS-----AGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE-----TTTTEEEEEETTTCCEEEEE
T ss_pred ECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEc-----CCCCeEEEEECCCCCEEEEe
Confidence 999999999998777899999999999 777765 23899999999999999886
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-11 Score=106.77 Aligned_cols=231 Identities=8% Similarity=-0.003 Sum_probs=151.8
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC--cEEEEecCCcceee
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS--KLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~ 123 (364)
...++|++++ ++++. .++.|++||..++........ ..... ++|+|+++.|+++..++ .|.+++...+....
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4567777765 44444 347999999998876554432 33344 99999999998888766 79999887665544
Q ss_pred ee----ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee---eecccCcE--EEEEEcCC-CCEEEEEeC
Q 040533 124 NL----EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR---INAHTAEV--CGLKWSNE-GNLLASGGD 193 (364)
Q Consensus 124 ~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~v--~~~~~~~~-~~~l~~~~~ 193 (364)
.+ ......+.+++++| ++..|+.+..++.|+.||..++...... ..++...- ..++|+|+ +.++++-..
T Consensus 209 ~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 44 22456678899999 5555555777889999998766522110 11122211 38999995 556666667
Q ss_pred CCeEEEEeCCCCCCCcceEEecccc---------------cceeEEEEccCCCcEEEeecCC-CCCeEEEEECCCCeEEE
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHR---------------AAVKALAWCPYQFNVLASGGGT-QDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~~~~ 257 (364)
.+.|+.|+.... +..+.++. .....++++|++. ++++. + .++.|+.|++.++....
T Consensus 288 ~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad--~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 288 LSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD--GFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp TTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE--TTTTCEEEEEETTTTEEEE
T ss_pred CCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe--CCCCCEEEEEECCCCEEEE
Confidence 789999986532 22222221 3467899999986 55553 2 47899999988887544
Q ss_pred EEec---------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 258 SVDT---------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 258 ~~~~---------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.... -.....+++++++.++++-.. ++.|+.+++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~------n~~Ir~i~~ 408 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW------GKAIRKYAV 408 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST------TCEEEEEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC------CCeEEEEEe
Confidence 3332 134788999998776665533 667776654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=109.62 Aligned_cols=273 Identities=10% Similarity=-0.034 Sum_probs=177.2
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecC-------
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGH------- 128 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~------- 128 (364)
.|.++|..+++....+.. +. .+ .+.++||+++++++. .++.|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~~v~~~i~v-G~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG-AF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEE-CT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeC-CC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 899999999998776665 32 23 799999999998886 3678999999999999988643
Q ss_pred CCcEEEEEeecCCCCEEEEeeC--CCcEEE--EEcccCcceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQ--DKSIIN--HDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~--dg~i~~--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~ 203 (364)
......++++| ++++++++.. +..+.+ +|+.+ ...+.. .+. ....|++ ..+++.+.|+.+.+.|+.
T Consensus 123 g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 123 GPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 12356789999 8988888764 456888 89876 222211 111 1123433 345556678888888876
Q ss_pred CCCC--CcceE----EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEecC-----------CC
Q 040533 204 KMSS--SKCLH----RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVDTK-----------AQ 264 (364)
Q Consensus 204 ~~~~--~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~-----------~~ 264 (364)
.... .+... .+.....+. . .+++..++.+. . +.+.+.|+.+.. .+..+... ..
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 5110 01110 011112222 3 55555555543 5 899999986542 23322211 11
Q ss_pred eEEEEEcCCccceeeecc-C---CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE-EEEEe-CCCcEEEEE
Q 040533 265 ICGLEWNRHHKEILSGHG-F---SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT-VVSAA-ADETLRFWE 338 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~-~---~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~-~dg~i~vw~ 338 (364)
...+.++|+++.++++.. . .... ++.+.++|+.+.+.+..+.... ....++|+|||++ +++.. .++.|.++|
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~-~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAA-AENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSC-EEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ceeeEEcCCCCEEEEEeccccCccccc-CCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 122789999988886531 0 0000 2345699999999999887554 5789999999984 55566 599999999
Q ss_pred eeCCCCCcceeccCCceeeeeecc
Q 040533 339 AFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+.+.+.+..+... ....++++.+
T Consensus 344 ~~t~kvv~~I~vg-~~P~~i~~~~ 366 (368)
T 1mda_H 344 AASDQDQSSVELD-KGPESLSVQN 366 (368)
T ss_dssp SSSCEEEEECCCC-SCCCEEECCC
T ss_pred CCCCcEEEEEECC-CCCCEEEeec
Confidence 9999988877643 3455666654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-11 Score=104.30 Aligned_cols=219 Identities=8% Similarity=-0.040 Sum_probs=144.2
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcc
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 210 (364)
-.....|+|.++.++++...++.|..||..++.. ..+ .....+.+++|+++++++++. .+ .|.+||..++.. ..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~-~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-TL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-EE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE-EE
Confidence 3467789994466777777888999999876542 222 234679999999999876654 44 499999765432 11
Q ss_pred eEEecc--cccceeEEEEccCCCcEEEeecC---CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCc
Q 040533 211 LHRFRD--HRAAVKALAWCPYQFNVLASGGG---TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 211 ~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g---~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
+..... ....+..++++|+|..++.+.+. ...+.|..++ +++.............++|+|+++.++.+.
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~---- 197 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVD---- 197 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEE----
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEE----
Confidence 111110 12357899999999644433210 0125677777 565443333334577899999998776543
Q ss_pred cCCCCeEEEeeCC--CC-ce-----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceee
Q 040533 286 SGDGQKLCLWKYP--HM-TK-----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLS 357 (364)
Q Consensus 286 ~~~~~~i~i~d~~--~~-~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~ 357 (364)
..++.|.+|++. ++ .. ...+......+..++++++|.+.++...++.|.+|+. +++.+..+..+...+++
T Consensus 198 -~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 198 -TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC 275 (326)
T ss_dssp -TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred -CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEE
Confidence 226899999986 55 31 2223333456788999999988777767789999998 55655666666667999
Q ss_pred eeec-cC
Q 040533 358 LKVS-PI 363 (364)
Q Consensus 358 ~~~s-p~ 363 (364)
++|+ |.
T Consensus 276 ~af~g~d 282 (326)
T 2ghs_A 276 PAFIGPD 282 (326)
T ss_dssp EEEESTT
T ss_pred EEEecCC
Confidence 9997 63
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-11 Score=100.58 Aligned_cols=253 Identities=15% Similarity=0.153 Sum_probs=160.0
Q ss_pred eEEEEECCC-----CceeeeeeecCCCCCceEEEE-----------c--CCCCEEEEEe-cCCcEEEEecCCc----cee
Q 040533 66 ELYLWKQEN-----GEVQKLLKVTGEDDFPTSISW-----------S--QDAKTLAVGY-MASKLQLWDAETS----KLI 122 (364)
Q Consensus 66 ~i~iw~~~~-----~~~~~~~~~~~~~~~v~~~~~-----------s--~~~~~l~~~~-~dg~i~iw~~~~~----~~~ 122 (364)
.|.+.|+.. ++......+..-.+....+-| + +++++|++.+ .+++|.|+|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 455556554 455554444433334444445 6 7888777655 6788999999755 555
Q ss_pred eeee-------cCCCcEEEEEeecCCCCEEEEeeCC------CcEEEEEcccCcceeeeeecc--c-CcEEEEEEcCCCC
Q 040533 123 RNLE-------GHDKRVATASWNHWNGHILTSGSQD------KSIINHDVRVSNNVTSRINAH--T-AEVCGLKWSNEGN 186 (364)
Q Consensus 123 ~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~ 186 (364)
++++ .....-..+...| ++ +++++..+ |.|.++|..+.+. +..+... . .--..+.|+|+++
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~ 200 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNE 200 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTT
T ss_pred eeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeE-EEEEccCCCCccccceEEECCCCC
Confidence 5552 1112455677788 77 77766555 7899999987764 4444321 1 1234578899999
Q ss_pred EEEEEe-------------------CCCeEEEEeCCCCCCCcceEEeccc--ccceeEEEE--ccCCCcEEEeec---CC
Q 040533 187 LLASGG-------------------DDNLVHVWDHSKMSSSKCLHRFRDH--RAAVKALAW--CPYQFNVLASGG---GT 240 (364)
Q Consensus 187 ~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~~~~~~~---g~ 240 (364)
.+++.. .+.+|.+||+.+. +.+.++... ......+.| +|++++.++++. ..
T Consensus 201 ~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~---k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 201 VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR---KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT---EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC---cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 888874 3689999998764 335554431 123445555 999987776541 00
Q ss_pred CCCeEEEEECCCCeE--EEEE--ec-----------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 241 QDGCIKIWNVQKGTC--IHSV--DT-----------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~--~~~~--~~-----------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.+++|.+|....++. .+.+ .. ......+.++++|++|+++.. ..+.|.+||+..
T Consensus 278 Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-----g~d~VavfdV~d 352 (462)
T 2ece_A 278 LSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-----GIGEVRQYDISN 352 (462)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-----TTTEEEEEECSS
T ss_pred CCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-----CCCEEEEEEecC
Confidence 356787776655432 1211 11 234678999999999998764 378999999853
Q ss_pred ---Cceeeeccccc--------------cceeEEeecCCCCEEEEEe
Q 040533 300 ---MTKWGELQHQT--------------SRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 300 ---~~~~~~~~~~~--------------~~i~~i~~~~~~~~l~~~~ 329 (364)
.+.+..+.... +....++++|||++|+++.
T Consensus 353 ~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 353 PFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 23444433220 1358899999999999988
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-11 Score=101.93 Aligned_cols=218 Identities=11% Similarity=0.120 Sum_probs=142.9
Q ss_pred eecccCCCc-c-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRN-N-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~-~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.....|+++ + ++.+. .++.|..|+. +++.. .+ ..+...+..++++++|+++++...++.|.+|+.+ ++....
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~~--~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-VL--LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-EE--EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-EE--eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 455777775 3 44444 4689999998 45432 22 2345678999999999977665556789999976 543222
Q ss_pred eecC----CCcEEEEEeecCCCCEEEE----eeC-------------CCcEEEEEcccCcceeeeeecccCcEEEEEEcC
Q 040533 125 LEGH----DKRVATASWNHWNGHILTS----GSQ-------------DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 125 ~~~~----~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (364)
.... ...+..+++.| +++++++ |.. .+.|..+|..++.. .. +. .....+.++|+|
T Consensus 122 ~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~~-~~-~~~~p~gl~~sp 197 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QR-MA-DLDHPNGLAFSP 197 (305)
T ss_dssp ECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-EE-EE-EESSEEEEEECT
T ss_pred EeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-EE-Ee-cCCCCcceEEcC
Confidence 1111 13466799999 8988886 332 24577777655542 22 22 345678899999
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 184 EGNLLASGGDD------NLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 184 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
+++.|+.+... +.|.+||+..... .....+ .........++++++|. +.++. .+ .|.+|+. +++.+
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~---~~-gv~~~~~-~g~~~ 270 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDRRHFASVPDGLPDGFCVDRGGW-LWSSS---GT-GVCVFDS-DGQLL 270 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETTEE-EEEEEEECCSSSCCCSEEECTTSC-EEECC---SS-EEEEECT-TSCEE
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCCeEEEECCCCCCCeEEECCCCC-EEEec---CC-cEEEECC-CCCEE
Confidence 99988777665 6899999764320 001111 11234456789999985 55543 24 4999998 57777
Q ss_pred EEEecCCCeEEEEEcCCccceeeec
Q 040533 257 HSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 257 ~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
..+..+..+..++|+++++.|+.+.
T Consensus 271 ~~~~~~~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 271 GHIPTPGTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp EEEECSSCCCEEEECTTSCEEEEEE
T ss_pred EEEECCCceeEEEEeCCCCEEEEEc
Confidence 7777666789999999988777764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-10 Score=91.84 Aligned_cols=249 Identities=7% Similarity=-0.022 Sum_probs=158.6
Q ss_pred EEEEeCCeEEEEECCCCcee-----eeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecCCCcE
Q 040533 59 LAIALGLELYLWKQENGEVQ-----KLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGHDKRV 132 (364)
Q Consensus 59 ~~~~~~~~i~iw~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v 132 (364)
|..+..+.|+.+++...... ..... ....+..++|++++..|..+. .++.|..++.........+.......
T Consensus 4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~--~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHI--PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEESSSCBCGGGCEEEEEE--EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEcCCeEEEEEecCcccccccceeeecC--CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 34444568888988765432 11211 123578999999766665554 56789999987655433333333567
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCCc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD---DNLVHVWDHSKMSSSK 209 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~ 209 (364)
..++++|.++.++++-...+.|.++++..... .............++++|++..|+.+.. .+.|..+++... .
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~-- 157 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N-- 157 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C--
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-C--
Confidence 89999983345555555677899999874332 2222222245789999997666655554 368888887532 1
Q ss_pred ceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCC
Q 040533 210 CLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 210 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
...+ .........++++|++..++++.. ..+.|..+|.........+........++.. +..++.+. ..
T Consensus 158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~-----~~ 227 (267)
T 1npe_A 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTD-----WK 227 (267)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEE-----TT
T ss_pred -cEEEEECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEE-----CC
Confidence 1222 122345788999998878888765 6789999999765444444443445667664 34444432 22
Q ss_pred CCeEEEeeCCCCceeeeccccc-cceeEEeecCCCC
Q 040533 289 GQKLCLWKYPHMTKWGELQHQT-SRILELSQSPDGL 323 (364)
Q Consensus 289 ~~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~ 323 (364)
.+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 228 ~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 6899999999998888876433 2467788888763
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-11 Score=114.03 Aligned_cols=284 Identities=11% Similarity=0.027 Sum_probs=182.4
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCC---------CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDD---------FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+-+|..+++..=......... ....+++ ++..|++++.|+.|..+|..+|+.+..+.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 346666677899999999998654433321100 0112333 45688888899999999999999988877
Q ss_pred cC-C----CcEEE-EEeecCCCCEEEEeeC------CCcEEEEEcccCcceeeeeeccc---------------------
Q 040533 127 GH-D----KRVAT-ASWNHWNGHILTSGSQ------DKSIINHDVRVSNNVTSRINAHT--------------------- 173 (364)
Q Consensus 127 ~~-~----~~v~~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~--------------------- 173 (364)
.. . ..+.+ ... .+..++.++. +|.|+.+|..+++..........
T Consensus 156 ~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp TTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred CCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 54 2 11211 111 2344555543 68999999998875433221110
Q ss_pred ----------CcEEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCCCCcceEEecc--cc----
Q 040533 174 ----------AEVCGLKWSNEGNLLASGGDDN-------------------LVHVWDHSKMSSSKCLHRFRD--HR---- 218 (364)
Q Consensus 174 ----------~~v~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~--~~---- 218 (364)
.....++++|++..++.+..++ .|..+|.++++. +-.++. |.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~---~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY---KWHYQETPGDNWDY 309 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE---EEEEESSTTCCSCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE---EEEEecCCCccccc
Confidence 0113577888888888887664 488999876543 433332 21
Q ss_pred ---cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC------------Ce----------------
Q 040533 219 ---AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------------QI---------------- 265 (364)
Q Consensus 219 ---~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------~v---------------- 265 (364)
....-+....+|+ .+++.+. .+|.++++|..+|+.+..+.... ++
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P 387 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred ccCCCcEEEecccCCcEeeEEEEEC--CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence 1112222333553 4555554 89999999999999987765321 01
Q ss_pred --------EEEEEcCCccceeeeccC-----------Ccc--------------------------CCCCeEEEeeCCCC
Q 040533 266 --------CGLEWNRHHKEILSGHGF-----------SSS--------------------------GDGQKLCLWKYPHM 300 (364)
Q Consensus 266 --------~~~~~~~~~~~l~~~~~~-----------~~~--------------------------~~~~~i~i~d~~~~ 300 (364)
..++++|++..+++.... ..+ ...+.|..||+.++
T Consensus 388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG 467 (677)
T 1kb0_A 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ 467 (677)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC
Confidence 156888888877764320 000 01378999999999
Q ss_pred ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 301 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+.+.++.. ..++....+..++..++.++.||.+++||..+++.+..+..
T Consensus 468 ~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 468 KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 98887763 33445556667888899999999999999999999887763
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-11 Score=113.02 Aligned_cols=256 Identities=14% Similarity=0.119 Sum_probs=163.5
Q ss_pred cEEeeCCCCCC--CcceeecccCCCcc-EEEEEe--C----CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE
Q 040533 33 EARILDAPNLR--NDYYSNMMDWGRNN-ILAIAL--G----LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA 103 (364)
Q Consensus 33 ~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~--~----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 103 (364)
.+.+++...+. ..+.+..++|||++ .++.+. . ..|++||+.+++.... .+.. .....++|+ |++.|+
T Consensus 114 ~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 114 AEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFF 189 (693)
T ss_dssp CEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEE
T ss_pred cEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEE
Confidence 34455543322 22346677899975 555432 1 4799999999986443 2211 113567899 999999
Q ss_pred EEecCC-------------cEEEEecCCcce----eeeeec-CCCcEEEEEeecCCCCEEEEeeC----CCcEEEEEccc
Q 040533 104 VGYMAS-------------KLQLWDAETSKL----IRNLEG-HDKRVATASWNHWNGHILTSGSQ----DKSIINHDVRV 161 (364)
Q Consensus 104 ~~~~dg-------------~i~iw~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~ 161 (364)
.++.+. .|++|++.++.. +..... |...+..+.|+| ++++|+.... +..|+++|+.+
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTS
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCC
Confidence 988774 399999877642 222233 445578899999 8887755432 24899999877
Q ss_pred CcceeeeeecccCcEEEEEEcCCCCEEEEEe-CC---CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DD---NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
+......+..+....... |++++..|+..+ .+ +.|..+|+..... .....+..+...+. .|++++..++++.
T Consensus 269 ~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 269 ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEE
Confidence 643344555555555554 566666555444 33 6799999876532 11344555555554 8889888777765
Q ss_pred cCCCCC--eEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 238 GGTQDG--CIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 238 ~g~~d~--~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
. .++ .|++||+..+ ....+.. ...+..+.+++++..++.... +-..-+.++.||+.+++.
T Consensus 345 ~--~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~s--s~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 345 M--VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFE--NYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp E--ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEE--CSSSCCEEEEECTTTCCE
T ss_pred E--ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEec--CCCCCCEEEEEECCCCeE
Confidence 4 444 6899998754 4455543 345777888888888776532 112347899999887653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-10 Score=96.81 Aligned_cols=268 Identities=7% Similarity=-0.005 Sum_probs=165.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCC-------CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGE-------DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
+.+++++.++.|+.+|.++++..-....... ...+.+ ....++..+++++.++.|..+|.++|+.+......
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 4566777788999999999987544443221 122222 12224567888888999999999999988776644
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE------EEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV------CGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
......... .+..++.++.++.|..+|..+++..... ... .++ ...... +..++.++.++.+..+|.
T Consensus 133 ~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~-~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 133 GEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTV-NLD-MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp SCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEE-ECC-C-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred CceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEE-eCC-CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 322222223 3457788888999999999887753332 211 111 111121 346778888999999998
Q ss_pred CCCCCCcceEEeccccc--c--------e-eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEc
Q 040533 203 SKMSSSKCLHRFRDHRA--A--------V-KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWN 271 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~--~--------v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~ 271 (364)
.+++. +........ . + ...... +..+++. + .++.+..+|..+++.+....... ...+...
T Consensus 206 ~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~-~--~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~ 276 (376)
T 3q7m_A 206 EQGQM---IWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFAL-A--YNGNLTALDLRSGQIMWKRELGS-VNDFIVD 276 (376)
T ss_dssp TTCCE---EEEEECCC-----------CCCCCCEEE--TTEEEEE-C--TTSCEEEEETTTCCEEEEECCCC-EEEEEEE
T ss_pred CCCcE---EEEEecccCCCCcccccccccCCCcEEE--CCEEEEE-e--cCcEEEEEECCCCcEEeeccCCC-CCCceEE
Confidence 76532 333221100 0 1 111111 2244443 2 68999999999999887765433 3344433
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+..++++.. ++.+..+|..+++.+..... ....+..... .+..|+.++.+|.|.++|..+++.+.....
T Consensus 277 --~~~l~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 277 --GNRIYLVDQ------NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp --TTEEEEEET------TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcC------CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 344444432 78999999999998776652 2222333333 346788899999999999998887655543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-11 Score=100.86 Aligned_cols=236 Identities=11% Similarity=-0.002 Sum_probs=149.0
Q ss_pred CCceEEEEcCCCCEEEEEe--cCCcEEEEecCCcceeeee-------ecCCCcEEEEEeecCCCCEEEEeeC-----CCc
Q 040533 88 DFPTSISWSQDAKTLAVGY--MASKLQLWDAETSKLIRNL-------EGHDKRVATASWNHWNGHILTSGSQ-----DKS 153 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~ 153 (364)
..+..++++|+|+.+++.. .++.++||.+.+++.. .+ ..+-..+..+++++ +++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence 5789999999999888864 2343555555455432 22 12456799999998 7776665433 578
Q ss_pred EEEEEcccCcceeeeeec------ccCcEEEEEEcCCCCEE-EEEe---CCCeEEEEeCCCCCCCcceEEeccc------
Q 040533 154 IINHDVRVSNNVTSRINA------HTAEVCGLKWSNEGNLL-ASGG---DDNLVHVWDHSKMSSSKCLHRFRDH------ 217 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~------ 217 (364)
|.+||+.+++. ...+.. +...+..+++++++..+ ++.. .++.|.+||+.+... ...+..|
T Consensus 95 i~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 95 LVAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---ARVLQGYPGIAPE 170 (343)
T ss_dssp EEEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE---EEECTTCTTTSCC
T ss_pred EEEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE---EEEecCCCccccc
Confidence 99999987653 332321 22356889999865444 4444 578999999865432 2211110
Q ss_pred -----------------------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECC---CCe--------EEEEEecCC
Q 040533 218 -----------------------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ---KGT--------CIHSVDTKA 263 (364)
Q Consensus 218 -----------------------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~---~~~--------~~~~~~~~~ 263 (364)
...+..++|+|+++.++++.. ....+..++.. .+. .+.......
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 248 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP 248 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCChhhhhcceEecccCC
Confidence 123578999999977776653 34466666532 110 011222234
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
....++++++|...++... ++.|.+||..+++....... +...+.+++|.++|.++++.+..+.+.+|
T Consensus 249 ~pdgia~d~~G~l~va~~~------~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLA------HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp SCSCEEECTTCCEEEEEGG------GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred CCceEEECCCCCEEEEccC------CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 5678999999987777644 78999999855654332222 24568899999999888887755554433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-11 Score=109.12 Aligned_cols=274 Identities=12% Similarity=0.062 Sum_probs=175.6
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeec-CCC--CCce-EEEEcCCCCEEEEEec------CCcEEEEecCCcceeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVT-GED--DFPT-SISWSQDAKTLAVGYM------ASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~--~~v~-~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++++.++.|+.+|..+++..-..... ... ..+. .... .+..+++++. +|.|+.+|.++|+.+..+
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 45666777999999999999875444432 100 1111 1111 2345666553 689999999999988776
Q ss_pred ecCCCc--------------------------------EEEEEeecCCCCEEEEeeCCC-------------------cE
Q 040533 126 EGHDKR--------------------------------VATASWNHWNGHILTSGSQDK-------------------SI 154 (364)
Q Consensus 126 ~~~~~~--------------------------------v~~~~~~~~~~~~l~~~~~dg-------------------~i 154 (364)
...... ...++++| ++.+++.+..++ .|
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 542211 12467888 777888776654 49
Q ss_pred EEEEcccCcceeeeeec-cc-------CcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCCCCcceEEecccc-----
Q 040533 155 INHDVRVSNNVTSRINA-HT-------AEVCGLKWSNEG---NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR----- 218 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----- 218 (364)
..+|.++++.....-.. |. ....-+....+| ..++.++.+|.++++|.++++. +.......
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF---ISAKNFVPVNWAS 362 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE---eccccccccCccc
Confidence 99999988754332211 21 122223333467 6889999999999999877543 33222100
Q ss_pred ------cce------------------------eEEEEccCCCcEEEeec--------------C---------------
Q 040533 219 ------AAV------------------------KALAWCPYQFNVLASGG--------------G--------------- 239 (364)
Q Consensus 219 ------~~v------------------------~~~~~~~~~~~~~~~~~--------------g--------------- 239 (364)
.++ ..++++|+...+++... |
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 000 25678888755544321 0
Q ss_pred -----------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 240 -----------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 240 -----------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
...+.|..||+.+++.+..+....++....+...+..++.+.. ++.+++||..+++.+.++..
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~------dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA------DGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC------CCcEEEEECCCCceeeeeeC
Confidence 0127899999999999988887766666667777777777643 99999999999999998874
Q ss_pred cc-cceeEEeecCCCCEE-EEEeC----------------CCcEEEEEeeC
Q 040533 309 QT-SRILELSQSPDGLTV-VSAAA----------------DETLRFWEAFG 341 (364)
Q Consensus 309 ~~-~~i~~i~~~~~~~~l-~~~~~----------------dg~i~vw~~~~ 341 (364)
.. ....-+.|..+|+.+ ++.+. .+.+.+|.+..
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 43 222345666788644 43222 36788888764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-11 Score=104.44 Aligned_cols=253 Identities=8% Similarity=-0.058 Sum_probs=163.7
Q ss_pred cccCCCcc--EEEEE----------eCCeEEEEECCCCceeeeeeecCC-----CCCceEEEEcCCCCEEEEEec--CCc
Q 040533 50 MMDWGRNN--ILAIA----------LGLELYLWKQENGEVQKLLKVTGE-----DDFPTSISWSQDAKTLAVGYM--ASK 110 (364)
Q Consensus 50 ~~~~~~~~--~~~~~----------~~~~i~iw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~ 110 (364)
.+.++|++ ++.+. .++.|.+||..+++......+.+. ......++++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 46667753 44333 257899999999998777665411 135778999999999998874 457
Q ss_pred EEE--EecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc----Ccceee----eeecccCcEEEEE
Q 040533 111 LQL--WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV----SNNVTS----RINAHTAEVCGLK 180 (364)
Q Consensus 111 i~i--w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----~~~~~~----~~~~~~~~v~~~~ 180 (364)
|.+ +|..+ +..+... +. ....|.....+++.+.||.+.+.|+.+ ...... .+.....+. .
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~ 218 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q 218 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E
T ss_pred EEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c
Confidence 888 99877 4444321 11 223453445666777889888888876 222221 111122333 3
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc----------cccceeEEEEccCCCcEEEeecCC-C-----CCe
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD----------HRAAVKALAWCPYQFNVLASGGGT-Q-----DGC 244 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~-~-----d~~ 244 (364)
++++..++..+. +.+.+.|+..... +.+..+.. .......++++|+++.++++.... . ++.
T Consensus 219 -~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~ 295 (368)
T 1mda_H 219 -ANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp -ETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred -cccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence 566666666666 8999999864221 11111110 111222378999998888753100 1 235
Q ss_pred EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
+.++|+.+++.+..+..+.....++++|+|+.++.+..+ .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 296 ~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~----~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA----GTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET----TTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC----CCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 669999999999988877789999999999876555421 289999999999999999875543 35566543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-11 Score=109.22 Aligned_cols=285 Identities=12% Similarity=0.071 Sum_probs=178.8
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCC--------CCc-eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGED--------DFP-TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--------~~v-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+.+|..+|+..=........ ..+ ..++. ++..+++++.|+.|..+|.++|+.+..+.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 34666667889999999999864433321110 000 11222 35678888899999999999999887766
Q ss_pred cC--CC---cEE-EEEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeecc----------------------
Q 040533 127 GH--DK---RVA-TASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINAH---------------------- 172 (364)
Q Consensus 127 ~~--~~---~v~-~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~---------------------- 172 (364)
.. .. .+. +... . ++. ++.++ .+|.|..||.++++.........
T Consensus 149 ~~~~~~~~~~~~~sP~v-~-~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRV-V-NGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp CCSCTTSCCBCCSCCEE-E-TTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred CcCCCCCCccccCCcEE-E-CCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 42 11 111 1111 1 444 44443 36899999999887543322100
Q ss_pred --------cCcEEEEEEcCCCCEEEEEeCCCe-------------------EEEEeCCCCCCCcceEEecc--cc-----
Q 040533 173 --------TAEVCGLKWSNEGNLLASGGDDNL-------------------VHVWDHSKMSSSKCLHRFRD--HR----- 218 (364)
Q Consensus 173 --------~~~v~~~~~~~~~~~l~~~~~d~~-------------------i~iwd~~~~~~~~~~~~~~~--~~----- 218 (364)
......++++|+..+++.+..++. |..+|.++++. +-.++. |.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~---~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY---VWHYQTTPGDAWDYT 302 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE---EEEEESSTTCCSCCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce---eEeeecCCccccccc
Confidence 001125788888889998887764 99999877543 444432 21
Q ss_pred --cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC-------------------------------
Q 040533 219 --AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------------------------------- 263 (364)
Q Consensus 219 --~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------------------------- 263 (364)
.+........++. .+++.+. .+|.++++|.++|+.+.......
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~ 380 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAP--KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNL 380 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEE
T ss_pred CCCCcEEEeeccCCcEEEEEEEEC--CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeE
Confidence 1111111122332 2555554 89999999999999885443211
Q ss_pred ---------CeEEEEEcCCccceeeeccC---------------------Ccc------------------CCCCeEEEe
Q 040533 264 ---------QICGLEWNRHHKEILSGHGF---------------------SSS------------------GDGQKLCLW 295 (364)
Q Consensus 264 ---------~v~~~~~~~~~~~l~~~~~~---------------------~~~------------------~~~~~i~i~ 295 (364)
....++++|+...+++...- ..+ ..++.|..|
T Consensus 381 ~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~ 460 (689)
T 1yiq_A 381 VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAW 460 (689)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred eCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEE
Confidence 01136788887777654210 000 014889999
Q ss_pred eCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc
Q 040533 296 KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 296 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
|+.+++.+.+++.+. ++..-.+...+.+++.++.||.|+.||.++++.+..+...
T Consensus 461 D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 461 DPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp ETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 999999988876554 2333456667889999999999999999999998777643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-10 Score=96.81 Aligned_cols=257 Identities=8% Similarity=0.021 Sum_probs=157.9
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE---
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV--- 132 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v--- 132 (364)
+.+++++.++.|+.+|..+++..-....... ........ +..+++++.++.|..+|..+|+.+..........
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 4566777789999999999987544443221 11122222 4578888889999999999999887766432211
Q ss_pred --EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC------cEEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q 040533 133 --ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA------EVCGLKWSN--EGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 133 --~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~~~~~d~~i~iwd~ 202 (364)
..... .+..++.+..++.+..+|..+++........... .+..+.-.| .+..++.++.++.+..+|.
T Consensus 180 ~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 180 GESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp CCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred CCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence 12222 3456778888999999999877753332211100 000011111 2457777888999999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-C-CCeEEEEEcCCccceeee
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-K-AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~ 280 (364)
++++ .+.... ......+... +..+++.. .++.+..+|..+++.+..... . ......... +..++++
T Consensus 257 ~tG~---~~w~~~--~~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~ 324 (376)
T 3q7m_A 257 RSGQ---IMWKRE--LGSVNDFIVD--GNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVG 324 (376)
T ss_dssp TTCC---EEEEEC--CCCEEEEEEE--TTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEE
T ss_pred CCCc---EEeecc--CCCCCCceEE--CCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEE
Confidence 7653 233332 2223344443 33555543 588999999999998877652 2 222233332 3444444
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
. .++.+..+|..+++.+.........+...... .+..|+.++.+|.|..|+
T Consensus 325 ~------~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 325 D------SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp C------TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred e------CCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 3 38899999999999887776533333322111 245788899999999986
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.5e-11 Score=108.63 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=164.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC---CCCEEEEEe------cCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ---DAKTLAVGY------MASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.|+.|+.+|..+|+..-......+......+..+| ++ .++++. .+|.|..||.++|+.+..+.
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 346666679999999999998754444320111111111222 44 455554 26899999999999887665
Q ss_pred cCC-------------------------------CcEEEEEeecCCCCEEEEeeCCCc-------------------EEE
Q 040533 127 GHD-------------------------------KRVATASWNHWNGHILTSGSQDKS-------------------IIN 156 (364)
Q Consensus 127 ~~~-------------------------------~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~~ 156 (364)
... .....++++| +..+++.+..++. |..
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 210 0112567888 7788888887763 999
Q ss_pred EEcccCcceeeeeec-cc-------CcEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCCCCcceEEeccc--------
Q 040533 157 HDVRVSNNVTSRINA-HT-------AEVCGLKWSNEGN---LLASGGDDNLVHVWDHSKMSSSKCLHRFRDH-------- 217 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------- 217 (364)
+|.++++........ |. .++.......+|+ .++.++.+|.++++|.++++. +......
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGM 356 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEE
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---ecccccccccccccc
Confidence 999988754332211 21 1222222223554 788899999999999877543 2111000
Q ss_pred --------------------c-----------cceeEEEEccCCCcEEEeec------------------------C---
Q 040533 218 --------------------R-----------AAVKALAWCPYQFNVLASGG------------------------G--- 239 (364)
Q Consensus 218 --------------------~-----------~~v~~~~~~~~~~~~~~~~~------------------------g--- 239 (364)
. ..-..++++|+...+++... |
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 0 00123678887654443210 0
Q ss_pred ---------------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee
Q 040533 240 ---------------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304 (364)
Q Consensus 240 ---------------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~ 304 (364)
..+|.|..||+.+++.+..+..+.+...-.+...+..++.+.. |+.++.||.++++.+.
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~------dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA------DGRVIAYAADTGEKLW 510 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEE
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC------CCcEEEEECCCCccce
Confidence 0148899999999999988887766655566667777777643 9999999999999998
Q ss_pred eccccccc-eeEEeecCCCCE-EEEE
Q 040533 305 ELQHQTSR-ILELSQSPDGLT-VVSA 328 (364)
Q Consensus 305 ~~~~~~~~-i~~i~~~~~~~~-l~~~ 328 (364)
+++...+. ..-+.|..+|+. +++.
T Consensus 511 ~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 511 EQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eeeCCCCcccCceEEEECCEEEEEEE
Confidence 88754322 234667778874 4433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-11 Score=106.24 Aligned_cols=247 Identities=9% Similarity=0.048 Sum_probs=172.3
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEE-c-CCCCEEEEEe------------------cCCcEEEEecCCcceee
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISW-S-QDAKTLAVGY------------------MASKLQLWDAETSKLIR 123 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~dg~i~iw~~~~~~~~~ 123 (364)
++.|.+.|+.+.++..+.+++. ...+..+++ + |+++++++++ .++.+.+.|.++++...
T Consensus 111 ~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~ 189 (595)
T 1fwx_A 111 NTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW 189 (595)
T ss_dssp TTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence 5689999999999888777643 345788898 5 9999998884 34579999999998888
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCC---------------cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDK---------------SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
++.-.. ....++++| +++++++.+.+. .|.+.|...... +.++|+..
T Consensus 190 qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~----------------~v~~Gk~~ 251 (595)
T 1fwx_A 190 QVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK----------------AIAAGDYQ 251 (595)
T ss_dssp EEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH----------------HHHHTCSE
T ss_pred EEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeE----------------eccCCCee
Confidence 877433 446678999 888888888653 234444322111 22334433
Q ss_pred EEEeCCCeEEEEeCCCCCCCcc-eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe------------E
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKC-LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT------------C 255 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------------~ 255 (364)
.. +.|.+.|.++.. .+. +..+. -.....++.++|||+++++++. .+.+|.++|+.+.+ .
T Consensus 252 ~i----~~V~VID~~~~~-~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 252 EL----NGVKVVDGRKEA-SSLFTRYIP-IANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp EE----TTEEEEECSGGG-CCSSEEEEE-EESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred EE----CcEEEEeCcccC-CceeEEEEe-cCCCceEEEEcCCCCEEEEeCC--CCCeEEEEECcccccccccccCcccce
Confidence 33 459999987621 122 33332 2345678999999999999876 78999999998653 4
Q ss_pred EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC----------Cceeeeccccccc-----eeEEeecC
Q 040533 256 IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH----------MTKWGELQHQTSR-----ILELSQSP 320 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~----------~~~~~~~~~~~~~-----i~~i~~~~ 320 (364)
...+........++|+|+| .+++.. .-++.|.+||+.+ .+.+.++..|-.+ -..+.++|
T Consensus 324 ~~~v~vG~gP~h~aF~~dG-~aY~t~-----~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~ 397 (595)
T 1fwx_A 324 VAEPELGLGPLHTAFDGRG-NAYTSL-----FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA 397 (595)
T ss_dssp EECCBCCSCEEEEEECTTS-EEEEEE-----TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred EEEcCCCCCcceEEECCCC-eEEEEE-----ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC
Confidence 5566666778999999999 655543 2399999999876 5566666655432 13446789
Q ss_pred CCCEEEEEeC---CCcE----------EEEEeeCCC
Q 040533 321 DGLTVVSAAA---DETL----------RFWEAFGPS 343 (364)
Q Consensus 321 ~~~~l~~~~~---dg~i----------~vw~~~~~~ 343 (364)
||++|+++.. |..+ .++|+..++
T Consensus 398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 9999999753 4432 889995544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-13 Score=116.00 Aligned_cols=188 Identities=10% Similarity=0.004 Sum_probs=104.6
Q ss_pred CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcE
Q 040533 98 DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEV 176 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v 176 (364)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+.+ ++..+++++.||.|+.||..+++.... ...+. ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~-~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTK-LPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEE-CSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeee-eeccCcccc
Confidence 577899999999999999999999988875 4555555555 677888888999999999987764322 22111 111
Q ss_pred E-EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 177 C-GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 177 ~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
. +..+. .+..+++++.++.++.||.++++. +..+..+. ...++|++..+++ ++ .|+.|+.||.++++.
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~---~w~~~~~~----~~~~~p~~~~v~~-~~--~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEK---QQTLSSAF----ADSLSPSTSLLYL-GR--TEYTITMYDTKTREL 152 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC-----------------------------EEE-EE--EEEEEECCCSSSSSC
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcE---EEEecCCC----cccccccCCEEEE-Ee--cCCEEEEEECCCCCE
Confidence 0 01111 345678888899999999877543 44443332 2345666644444 43 689999999999987
Q ss_pred EEEEecCCCeEEEEEcCCc---cceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 256 IHSVDTKAQICGLEWNRHH---KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
+..+.... .....++++. ..++++. .++.++.||..+++.+.+..
T Consensus 153 ~W~~~~~~-~~~~~~~~~~~~~~~v~~~~------~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 153 RWNATYFD-YAASLPEDDVDYKMSHFVSN------GDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCEEEEEE-ECCBCCCCCTTCCCCEEEEE------TSCEEEEECTTTCCEEEEEE
T ss_pred EEeEeccc-ccCccccCCccccceEEEEC------CCCEEEEEECCCCcEEEEec
Confidence 65554221 1223333322 3444443 38999999999998877655
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-10 Score=96.44 Aligned_cols=218 Identities=11% Similarity=0.049 Sum_probs=145.0
Q ss_pred EEEEE-eCCeEEEEECCCC----ceeeeee---e--cCCCCCceEEEEcCCCCEEEEEecC------CcEEEEecCCcce
Q 040533 58 ILAIA-LGLELYLWKQENG----EVQKLLK---V--TGEDDFPTSISWSQDAKTLAVGYMA------SKLQLWDAETSKL 121 (364)
Q Consensus 58 ~~~~~-~~~~i~iw~~~~~----~~~~~~~---~--~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iw~~~~~~~ 121 (364)
+++.+ .++.|+++|..+. +..+..+ + +........+..+|+| +++++..+ |.|.++|.++++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 44333 4689999998755 3333331 1 0012245677889999 66666555 7899999999999
Q ss_pred eeeeecCCC---cEEEEEeecCCCCEEEEee-------------------CCCcEEEEEcccCcceeeeeecc--cCcEE
Q 040533 122 IRNLEGHDK---RVATASWNHWNGHILTSGS-------------------QDKSIINHDVRVSNNVTSRINAH--TAEVC 177 (364)
Q Consensus 122 ~~~~~~~~~---~v~~~~~~~~~~~~l~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~~--~~~v~ 177 (364)
+.++..... --..+.|+| +++.+++.. .+.+|.+||+.+++ ....+..- .....
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGEENRMAL 254 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCTTEEEEE
T ss_pred EEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCCCCCccc
Confidence 988863222 234578899 888888874 36799999998754 34444332 12344
Q ss_pred EEEE--cCCCCEEEEEeC------CCeEEEEeCCCCCCCcceEEe--cc----------------cccceeEEEEccCCC
Q 040533 178 GLKW--SNEGNLLASGGD------DNLVHVWDHSKMSSSKCLHRF--RD----------------HRAAVKALAWCPYQF 231 (364)
Q Consensus 178 ~~~~--~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~--~~----------------~~~~v~~~~~~~~~~ 231 (364)
.+.| +|++++++++++ +++|.+|....+ ..+..+.+ .. .......+.++|+++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr 333 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK 333 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence 5555 999998887774 567877654431 11111111 10 023467899999999
Q ss_pred cEEEeecCCCCCeEEEEECCC---CeEEEEEecCC---------------CeEEEEEcCCccceeeec
Q 040533 232 NVLASGGGTQDGCIKIWNVQK---GTCIHSVDTKA---------------QICGLEWNRHHKEILSGH 281 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~---------------~v~~~~~~~~~~~l~~~~ 281 (364)
+++++.- ..+.|.+||+.. .+.+..+...+ ....++++|+|++|+++.
T Consensus 334 fLYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 334 FLYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9998876 578999999863 45666665542 258899999999999886
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-10 Score=96.26 Aligned_cols=263 Identities=12% Similarity=0.072 Sum_probs=163.6
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
..+...+++.+-++.++ |..+|. +++....... .........+. +..+.+++.++.|..+|.. ++........
T Consensus 63 ~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~--~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~ 135 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDT--KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK 135 (330)
T ss_dssp ECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC-------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred cceEEecCCcEEEecCc-EEEECC-CCcEEEEEEC--CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence 44444444444444445 888886 4543222221 12222333333 4567788888999999988 7777666655
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 208 (364)
...+.++...+ ++. +..++.++.|..+|.. +.. ..........+.++...+++.+.+ ++ +.|..+| .++
T Consensus 136 ~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g--- 204 (330)
T 3hxj_A 136 KAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTE-KWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDG--- 204 (330)
T ss_dssp SCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTS---
T ss_pred CceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCE-eEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCC---
Confidence 55566666655 554 6667788999999987 543 333334445566777777776544 44 7799999 433
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC-eEEEEEcCCccceeeeccCCccC
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSG 287 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~~~~ 287 (364)
+...........+.++...+++ .+++.. .++.+..+|. +++.+..+..... +..+...+++...+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t---~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t------- 272 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDG-TIYVTS---LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGS------- 272 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTS-CEEEEE---TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEEC-------
T ss_pred cEEEEEccCCcceeceEECCCC-eEEEEc---CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEec-------
Confidence 2344444445668888888877 454432 5778888874 5666666654433 4456666666555443
Q ss_pred CCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.++.|..+|. +++.+..+......+.++...++|. |..++.+|.+++......+
T Consensus 273 ~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 273 YDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp TTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred CCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 2778999995 6777766665556677888877875 5668899999998765443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-09 Score=86.52 Aligned_cols=251 Identities=9% Similarity=0.037 Sum_probs=155.0
Q ss_pred CCEEEEEecCCcEEEEecCCccee-----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLI-----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT 173 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 173 (364)
|++|+.+.. +.|+.++++..... ..+......+..++|++.++.++++-..++.|..+++..... ........
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCC
Confidence 345666553 57888888754321 112222345789999984445555555678999999875442 22222223
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 174 AEVCGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.....+++++++..|+.+ ...+.|.++++..... . ............++++|++..++++..+...+.|..+++..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~--~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-R--VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E--EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-E--EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 467899999976555544 4567899999764221 1 11111224568899999776777765411247898888764
Q ss_pred CeEEEEEe-c-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE-e
Q 040533 253 GTCIHSVD-T-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA-A 329 (364)
Q Consensus 253 ~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~ 329 (364)
.. ...+. . -.....+++++++..|+.+. ...+.|..+|.........+.. ......++.. +..|+.+ .
T Consensus 156 ~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d-----~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 156 TN-RRILAQDNLGLPNGLTFDAFSSQLCWVD-----AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp CC-CEEEECTTCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEET
T ss_pred CC-cEEEEECCCCCCcEEEEcCCCCEEEEEE-----CCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEEC
Confidence 32 22332 2 24578999999887776654 2368999999875443333332 2234566664 4455544 4
Q ss_pred CCCcEEEEEeeCCCCCcceeccC-CceeeeeeccC
Q 040533 330 ADETLRFWEAFGPSGSGDFVSHL-DGLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~~~~~~~~~~-~~v~~~~~sp~ 363 (364)
..+.|.++|..+++.+..+.... ....++++.|.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 56899999998887777665332 24778888875
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-10 Score=95.28 Aligned_cols=230 Identities=9% Similarity=0.031 Sum_probs=141.3
Q ss_pred eecccCCCcc-EEEEEe---CCeEEEEECCCCceeeee----eecCCCCCceEEEEcCCCCEEEEEec-----CCcEEEE
Q 040533 48 SNMMDWGRNN-ILAIAL---GLELYLWKQENGEVQKLL----KVTGEDDFPTSISWSQDAKTLAVGYM-----ASKLQLW 114 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~---~~~i~iw~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw 114 (364)
...++.++++ +++... ++.+.||.+.+++....- ...++...+..++++++++++++-.. ++.|.+|
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~ 98 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAW 98 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEE
Confidence 4556666654 443321 232444444345432110 11235568999999999886666544 5789999
Q ss_pred ecCCcceeeeeecC------CCcEEEEEeecCCCCEEEEee---CCCcEEEEEcccCcceeeeeecc-------------
Q 040533 115 DAETSKLIRNLEGH------DKRVATASWNHWNGHILTSGS---QDKSIINHDVRVSNNVTSRINAH------------- 172 (364)
Q Consensus 115 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~------------- 172 (364)
|+.+++.+..+... ...+..++++|.++..+++.. .++.|.+||+.++.. ...+..|
T Consensus 99 d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~ 177 (343)
T 2qe8_A 99 DTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVID 177 (343)
T ss_dssp ETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSCCSCCCEET
T ss_pred ECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCcccccccceeEC
Confidence 99999877666532 235688999983445555554 678999999876542 2222211
Q ss_pred ----------------cCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCC---CCC--Ccce--EEecccccceeEEEEcc
Q 040533 173 ----------------TAEVCGLKWSNEGNLLASGGDDN-LVHVWDHSK---MSS--SKCL--HRFRDHRAAVKALAWCP 228 (364)
Q Consensus 173 ----------------~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~---~~~--~~~~--~~~~~~~~~v~~~~~~~ 228 (364)
...+..++|+|+++.|+++..++ .+..++... ... .+.. ....++......+++++
T Consensus 178 g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~ 257 (343)
T 2qe8_A 178 GVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK 257 (343)
T ss_dssp TEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT
T ss_pred CEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC
Confidence 12368899999999888887665 555554321 100 0000 01113344567899999
Q ss_pred CCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeec
Q 040533 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 229 ~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~ 281 (364)
+| .++++.. .++.|.+||..+++....... .....++++.+++.++++..
T Consensus 258 ~G-~l~va~~--~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 258 DH-NIYVGDL--AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp TC-CEEEEEG--GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CC-CEEEEcc--CCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 98 5666655 689999999866764433332 24578999999887666653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-11 Score=99.31 Aligned_cols=260 Identities=13% Similarity=0.075 Sum_probs=162.8
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATA 135 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 135 (364)
+.+.+++.++.|..|| .+++...... .+...+.++...+++. |.+++.+ |..+|. +++....+..........
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~--~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFK--SGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSC--GGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEe--cCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 3455666688899999 7777533332 2233456667766665 5555544 888886 666655544333323333
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
... +..+..++.++.+..+|.. +.. ..........+.++...+++. +..++.++.|..+|.. + +....+.
T Consensus 104 ~~~---~~~l~v~t~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g---~~~~~~~ 173 (330)
T 3hxj_A 104 TIF---EDILYVTSMDGHLYAINTD-GTE-KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G---TEKWRFK 173 (330)
T ss_dssp EEE---TTEEEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S---CEEEEEE
T ss_pred eEE---CCEEEEEecCCEEEEEcCC-CCE-EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C---CEeEEEe
Confidence 332 5567778888999999987 543 333333444456666776775 5667778999999965 3 2344444
Q ss_pred ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 216 DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
.....+.++...+++ .+++. . +.|..+| .+++........ ..+.++...++|...+.+. ++.+..
T Consensus 174 ~~~~~~~~~~~d~~g-~l~v~----t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-------~~gl~~ 239 (330)
T 3hxj_A 174 TNDAITSAASIGKDG-TIYFG----S-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-------DGHLYA 239 (330)
T ss_dssp CSSCCCSCCEECTTC-CEEEE----S-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-------TTEEEE
T ss_pred cCCCceeeeEEcCCC-EEEEE----e-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-------CCeEEE
Confidence 445567777777777 44442 2 7799999 777777666543 5578888888887665542 678888
Q ss_pred eeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+| .+++.+..+......+..+.+.+++ .|..++.+|.|..+|. +++....+.
T Consensus 240 ~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~ 291 (330)
T 3hxj_A 240 IN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE 291 (330)
T ss_dssp EC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred EC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE
Confidence 87 4566666555444444556666566 5667788888988885 454444333
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-12 Score=109.99 Aligned_cols=188 Identities=8% Similarity=-0.016 Sum_probs=104.2
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc-
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA- 219 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~- 219 (364)
++..+++++.||.|..||..+++.... +.. ..+.+..+..++..+++++.|+.|+.||..+++. +..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~-~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~---~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT-LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG---LTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE-EEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC---SEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE-ecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce---eeeeeccCcc
Confidence 678899999999999999998875433 333 4444444556777888888999999999876543 333332211
Q ss_pred cee-EEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 220 AVK-ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 220 ~v~-~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
.+. +..+. .+ ..+++++ .++.++.||..+|+.+..+..+.. ..++|++..++++.. ++.|+.||..
T Consensus 82 ~~~~sp~~~-~~-~~v~~g~--~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~------dg~v~a~d~~ 148 (369)
T 2hz6_A 82 LVQASPCRS-SD-GILYMGK--KQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRT------EYTITMYDTK 148 (369)
T ss_dssp HHTTCSCC-------CCCCE--EEEEEEEECCC-------------------------EEEEEE------EEEEECCCSS
T ss_pred ccccCceEe-cC-CEEEEEe--CCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEec------CCEEEEEECC
Confidence 111 11111 22 2344443 689999999999998877765432 345667777877754 8999999999
Q ss_pred CCceeeeccccccceeEEeecCCC---CEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 299 HMTKWGELQHQTSRILELSQSPDG---LTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 299 ~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+++.+..+..+. .....++++. ..+++++.||.|+.||..+++.+..+.
T Consensus 149 tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 149 TRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp SSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred CCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 998877665322 2334444432 567788999999999999888765544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-08 Score=84.23 Aligned_cols=244 Identities=9% Similarity=-0.011 Sum_probs=149.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec--------------------CCCcEEEEEeecCCCCE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG--------------------HDKRVATASWNHWNGHI 144 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~ 144 (364)
+.-....+++|.++++++.++..++.|..|+..+++.. .+.. .......+++.+ +...
T Consensus 16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~ 93 (322)
T 2fp8_A 16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQ 93 (322)
T ss_dssp CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTE
T ss_pred CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC-CCCc
Confidence 33345678999999987888888999999998765432 2211 013578899986 3444
Q ss_pred EEEeeCCCcEEEEEcccCcceeeeeec-----ccCcEEEEEEcC-CCCEEEEEeC-----------------CCeEEEEe
Q 040533 145 LTSGSQDKSIINHDVRVSNNVTSRINA-----HTAEVCGLKWSN-EGNLLASGGD-----------------DNLVHVWD 201 (364)
Q Consensus 145 l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd 201 (364)
|+.+...+.+..+|..++. ...+.. .......+++.+ +|++.++-.. ++.|..+|
T Consensus 94 l~v~d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEEECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 5555555558888876432 111111 113468899999 8976665432 36788888
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC---eEEEEEecCCCeEEEEEcCCcccee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG---TCIHSVDTKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~ 278 (364)
..... +..+.........++++|++..++++.. ..+.|..|++... .........+ ...++++++|.+.+
T Consensus 172 ~~~~~----~~~~~~~~~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 172 PSTKE----TTLLLKELHVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp TTTTE----EEEEEEEESCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEE
T ss_pred CCCCE----EEEeccCCccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEE
Confidence 65432 2222222234567999999876777654 5789999998742 2111112233 78899999998666
Q ss_pred eeccCCc----cCCCCeEEEeeCCCCceeeeccccc----cceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 279 SGHGFSS----SGDGQKLCLWKYPHMTKWGELQHQT----SRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 279 ~~~~~~~----~~~~~~i~i~d~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+...... .+..+.|..+|. .++.+..+.... ..++.+++ .++++.++...++.|.++++..
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 5421000 001356888886 466666654332 34666766 4666666666778899998764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-08 Score=81.47 Aligned_cols=206 Identities=10% Similarity=0.037 Sum_probs=136.7
Q ss_pred cceeeeeecCCC--cEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEE-EeC
Q 040533 119 SKLIRNLEGHDK--RVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLAS-GGD 193 (364)
Q Consensus 119 ~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~ 193 (364)
.+.+.++. |.. ....+.|+| ++.++++.+. ++.|.++|+.+++.......+.......+++. +..|+. .-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556665 543 357899998 6655555443 57999999998875333221222223355555 444544 446
Q ss_pred CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC------CeEE
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------QICG 267 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------~v~~ 267 (364)
++.+.++|..+. +.+.++..... ....+++++..++++.+ ++.|.++|..+.+.+..+.... .+..
T Consensus 85 ~~~v~viD~~t~---~v~~~i~~g~~--~g~glt~Dg~~l~vs~g---s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 85 KNIGFIYDRRTL---SNIKNFTHQMK--DGWGLATDGKILYGSDG---TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp CSEEEEEETTTT---EEEEEEECCSS--SCCEEEECSSSEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred CCEEEEEECCCC---cEEEEEECCCC--CeEEEEECCCEEEEECC---CCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 789999997764 33555542211 12335567878888753 7899999999999888876431 3677
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc-------------cceeEEeecCCCCE-EEEEeCCCc
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-------------SRILELSQSPDGLT-VVSAAADET 333 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-------------~~i~~i~~~~~~~~-l~~~~~dg~ 333 (364)
+.|. +|. +++.. ..++.|.+.|..+++.+..+.... .....|+|+|+++. ++++...+.
T Consensus 157 le~~-dg~-lyvn~-----~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 157 LEYI-NGE-VWANI-----WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp EEEE-TTE-EEEEE-----TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred EEEE-CCE-EEEec-----CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 8888 664 44332 237899999999999988875321 24589999999865 555667789
Q ss_pred EEEEEeeCCC
Q 040533 334 LRFWEAFGPS 343 (364)
Q Consensus 334 i~vw~~~~~~ 343 (364)
|.+.++....
T Consensus 230 v~~i~l~~~~ 239 (266)
T 2iwa_A 230 LFEIKLHLVR 239 (266)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEeccc
Confidence 9999988754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-08 Score=94.67 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=160.0
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEec------CCcEEEEecCCcceeeeeec
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYM------ASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.+++++.++.|+.+|..+++..-........ ....+.-+| .+..++++.. +|.|..+|.++|+.+..+..
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTT-SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCC-CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 34666667999999999999875444432111 001111111 2345555543 58999999999998877652
Q ss_pred CC---C----------------------------cEEEEEeecCCCCEEEEeeCCC-------------------cEEEE
Q 040533 128 HD---K----------------------------RVATASWNHWNGHILTSGSQDK-------------------SIINH 157 (364)
Q Consensus 128 ~~---~----------------------------~v~~~~~~~~~~~~l~~~~~dg-------------------~i~~~ 157 (364)
.. . ....+++.| ...+++.++.++ .|..+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 10 0 012367777 677888887665 38999
Q ss_pred EcccCcceeeeeec-cc-------CcEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCCCCcceEEecccc--------
Q 040533 158 DVRVSNNVTSRINA-HT-------AEVCGLKWSNEGN---LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR-------- 218 (364)
Q Consensus 158 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------- 218 (364)
|.++++........ |. .+.....+..+|+ .++.++.+|.++++|..+++. +.......
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVD 352 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEEC
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE---eccccccccccccccc
Confidence 99988754332222 21 2333333333564 688899999999999777543 21111000
Q ss_pred ----cc------------------------eeEEEEccCCCcEEEee---------------------------------
Q 040533 219 ----AA------------------------VKALAWCPYQFNVLASG--------------------------------- 237 (364)
Q Consensus 219 ----~~------------------------v~~~~~~~~~~~~~~~~--------------------------------- 237 (364)
.+ -..++++|+...+++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 00 01256777654443310
Q ss_pred cCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce-eEE
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI-LEL 316 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~i 316 (364)
....+|.|..||+.+++.+.......+.....+...+..++.+.. ++.++.||..+++.+..++...... .-+
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~------dg~l~a~d~~tG~~l~~~~~~~~~~~~p~ 506 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA------AGQMHAYSADKGEALWQFEAQSGIVAAPM 506 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC------cccchhhhhhcChhheEecCCCCcccCce
Confidence 001358899999999999988876665555555566777777643 9999999999999998886543211 223
Q ss_pred eecCCCC-EEEEEe
Q 040533 317 SQSPDGL-TVVSAA 329 (364)
Q Consensus 317 ~~~~~~~-~l~~~~ 329 (364)
.+..+|+ +++.++
T Consensus 507 ~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 507 TFELAGRQYVAIMA 520 (668)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 3445666 455444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.7e-08 Score=80.23 Aligned_cols=228 Identities=7% Similarity=0.034 Sum_probs=140.0
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcce
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNV 165 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~ 165 (364)
.....++|+++++++++-..++.|..||... +....+. .......+++.+ +++++++..... .|..+|..++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~- 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV- 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE-
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeE-
Confidence 4577899999998777766788999999765 3333333 345788999999 788666554332 466667665542
Q ss_pred eeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe---------cccccceeEEEEccCCCcEEE
Q 040533 166 TSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF---------RDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 166 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~ 235 (364)
..... ........++..+++..+++-..++.|+.+|...... + +... ...-.....+ +|++..+++
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~-v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-S-IWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-E-EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-e-EEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 21111 1122345555555554455444688999998653210 0 1100 0111123445 788877888
Q ss_pred eecCCCCCeEEEEECCC-CeE--EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeeccccc
Q 040533 236 SGGGTQDGCIKIWNVQK-GTC--IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQHQT 310 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~-~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~ 310 (364)
+.. ..+.|..+++.. ++. ...+........++++++|++.++... .+.|.+++.. ++. +..+....
T Consensus 184 ~d~--~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~------~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 184 SNT--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI------YNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EET--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT------TCCEEEECTT-CCEEEEECGGGTC
T ss_pred EeC--CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCC------CCeEEEECCC-CCEEEEeeccccc
Confidence 765 678999999864 321 122222245677899999977665433 6789999975 554 22343333
Q ss_pred cceeEEeec---CCCCEEEEEeCCC
Q 040533 311 SRILELSQS---PDGLTVVSAAADE 332 (364)
Q Consensus 311 ~~i~~i~~~---~~~~~l~~~~~dg 332 (364)
...++++|. |+++.|+.++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 567899998 8888777766543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-08 Score=94.73 Aligned_cols=284 Identities=12% Similarity=0.052 Sum_probs=173.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCC--------CCc-eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGED--------DFP-TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--------~~v-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+-+|..+++..=........ ..+ ..+++ .+..+++++.|+.|..+|.++|+.+..+.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 44666777889999999999864333321100 000 11222 35678888889999999999999987766
Q ss_pred cCC----CcEEE-EEeecCCCCEEEEeeC------CCcEEEEEcccCcceeeeeec--c---------------------
Q 040533 127 GHD----KRVAT-ASWNHWNGHILTSGSQ------DKSIINHDVRVSNNVTSRINA--H--------------------- 172 (364)
Q Consensus 127 ~~~----~~v~~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~--~--------------------- 172 (364)
... ..+.+ .... ++ .++++.. +|.|..+|.++++........ .
T Consensus 145 ~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp CSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred cCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 421 11111 1111 33 4555443 588999999888754332210 0
Q ss_pred -------cCcEEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCCCCcceEEecc--cc------
Q 040533 173 -------TAEVCGLKWSNEGNLLASGGDDN-------------------LVHVWDHSKMSSSKCLHRFRD--HR------ 218 (364)
Q Consensus 173 -------~~~v~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~--~~------ 218 (364)
......+++.|+..+++.++.++ .|..+|.++++. +-.++. |.
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~---~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL---AWHYQVTPGDSWDFTA 298 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE---EEEEESSTTCCSCCCC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce---eeEeecCCCccccccC
Confidence 00112467888888888887765 388999877543 444332 21
Q ss_pred -cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC-------------C------------------
Q 040533 219 -AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-------------Q------------------ 264 (364)
Q Consensus 219 -~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------------~------------------ 264 (364)
.+.....+..+++ .+++.+. .+|.++++|..+|+.+....... +
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~ 376 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS 376 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC
T ss_pred CCCcEEEEeccCCcEEEEEEEEC--CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC
Confidence 1222222223443 2455554 89999999999999885443211 0
Q ss_pred ------eEEEEEcCCccceeeecc------------------CC------------ccCCCCeEEEeeCCCCceeeeccc
Q 040533 265 ------ICGLEWNRHHKEILSGHG------------------FS------------SSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 265 ------v~~~~~~~~~~~l~~~~~------------------~~------------~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
-..++++|+...+++... .. ....++.|.-||+.+++.+.+...
T Consensus 377 ~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~ 456 (668)
T 1kv9_A 377 PFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY 456 (668)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE
T ss_pred CccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC
Confidence 012567776655543210 00 112358899999999998877654
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+. +.....+...+.+++.++.||.|+.||..+++.+..+..
T Consensus 457 ~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 457 PT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp SS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 33 333334455677899999999999999999988777654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-07 Score=77.58 Aligned_cols=255 Identities=9% Similarity=0.002 Sum_probs=156.6
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 169 (364)
.+|.+..++ .+|+.+. ...|+..++........+. .......++|++.++.++++-...+.|..+++..... ....
T Consensus 36 ~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred CcccccccC-ceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEEE
Confidence 455555553 4555553 4568888887655444443 3455789999984555555555678899999875542 2222
Q ss_pred ecccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC-CeEEE
Q 040533 170 NAHTAEVCGLKWSNEGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD-GCIKI 247 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i 247 (364)
.........+++.+.+. ++++-...+.|.+.++..... ...+.........++++|.+..++.+.. .. +.|..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~~I~r 186 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEA 186 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECTTCSCEEEEEEETTTTEEEEEEC--SSSCEEEE
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EEEEeCCCCCcceEEEecCcCeEEEecc--CCCCEEEE
Confidence 22223457888987544 445555667899999764321 2222223345689999997778888764 34 88999
Q ss_pred EECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 248 WNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 248 ~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
+++........... -.....++++|++..|+.+. ...+.|..+++........+.........+++. .+...+
T Consensus 187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD-----~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~ 260 (349)
T 3v64_C 187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-----AKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYW 260 (349)
T ss_dssp EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEE
T ss_pred EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE-----CCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEE
Confidence 99865433222222 24578999999877777664 236789999986543333333333456778883 444555
Q ss_pred EEeCCCcEEEEEeeCCCCCcceeccCCceeeee
Q 040533 327 SAAADETLRFWEAFGPSGSGDFVSHLDGLLSLK 359 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 359 (364)
+-...+.|..++..+++....+........+++
T Consensus 261 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 261 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred ecCCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 555677888888666766666554333444444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-07 Score=79.26 Aligned_cols=255 Identities=8% Similarity=-0.011 Sum_probs=158.2
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 169 (364)
-.|.+..+ ..+|+.+. ...|+..++........+. .......++|++.++.++++-...+.|..+++..... ....
T Consensus 79 ~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 34555555 34555554 4578888887665544444 3456789999984555556656778899999875542 2222
Q ss_pred ecccCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC-CeEEE
Q 040533 170 NAHTAEVCGLKWSNEGNL-LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD-GCIKI 247 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i 247 (364)
.........+++.+.+.. +++-...+.|.+.++..... ...+.........++++|.+..++.+-. .. +.|..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~I~r 229 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEA 229 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---EEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCEEEE
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---EEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCEEEE
Confidence 222234567888875444 44555567888888753221 2222223355789999998878888764 34 78999
Q ss_pred EECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 248 WNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 248 ~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
+++........... -.....++++|++..|+.+. ...+.|..+++........+.........+++ ..+.+++
T Consensus 230 ~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-----AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE-----TTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE-----CCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEE
Confidence 99865433333332 24578999998887777664 23678999998654333333333345677888 3445555
Q ss_pred EEeCCCcEEEEEeeCCCCCcceeccCCceeeee
Q 040533 327 SAAADETLRFWEAFGPSGSGDFVSHLDGLLSLK 359 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 359 (364)
+-...+.|..++..+++....+........+++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 656678888888667776666654333444444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-08 Score=78.50 Aligned_cols=194 Identities=11% Similarity=0.095 Sum_probs=131.2
Q ss_pred eeecccCCCccEE-EEEe---CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcce
Q 040533 47 YSNMMDWGRNNIL-AIAL---GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~~~-~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~ 121 (364)
+...+.+++++.+ .++. ++.|.++|..+++......+..+ .....+++. ++.|..+. .++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 4567888885544 4332 47999999999998777665332 223345554 55555544 678999999999999
Q ss_pred eeeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-c---CcEEEEEEcCCCCEEEEEeCCCe
Q 040533 122 IRNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-T---AEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 122 ~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
+.++... ... ..+++ +++.++++..++.|.++|..+.+.......+. . ..++.+.|. ++...+....++.
T Consensus 99 ~~~i~~g~~~g---~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 99 IKNFTHQMKDG---WGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEEECCSSSC---CEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEECCCCCe---EEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 9888643 222 33555 66666666678899999998766433322221 1 236788888 6755555556789
Q ss_pred EEEEeCCCCCCCcceEEeccc-------------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 197 VHVWDHSKMSSSKCLHRFRDH-------------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
|.+.|..+++ .+..+... ......++|+|+++.+++++. ..+.+...++...
T Consensus 174 V~vID~~tg~---V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGT---LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCC---EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred EEEEECCCCc---EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence 9999987754 34444321 124589999999999999986 7888988887653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-08 Score=88.62 Aligned_cols=283 Identities=11% Similarity=0.056 Sum_probs=169.6
Q ss_pred ccEEEEEe-CCeEEEEEC-CCCceeeeeeecCCCC--------C-ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 56 NNILAIAL-GLELYLWKQ-ENGEVQKLLKVTGEDD--------F-PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 56 ~~~~~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~--------~-v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
+.+++.+. ++.|+-+|. .+++..=......... . -..++. ++..+++++.|+.|..+|.++|+.+..
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 34556666 789999999 8888643333221100 0 011233 356788888899999999999998876
Q ss_pred eecCCC----cEEE-EEeecCCCCEEEEeeC------CCcEEEEEcccCcceeeeeecccC-------------------
Q 040533 125 LEGHDK----RVAT-ASWNHWNGHILTSGSQ------DKSIINHDVRVSNNVTSRINAHTA------------------- 174 (364)
Q Consensus 125 ~~~~~~----~v~~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~------------------- 174 (364)
...... .+.+ .... ++ .+++++. ++.|..+|..+++...........
T Consensus 141 ~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred ecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 653220 1111 1111 44 4555544 789999999988754332111000
Q ss_pred ------------------cEEEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCCCCcceEEecc--cc
Q 040533 175 ------------------EVCGLKWSNEGNLLASGGDD----------------NLVHVWDHSKMSSSKCLHRFRD--HR 218 (364)
Q Consensus 175 ------------------~v~~~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~--~~ 218 (364)
....+++.++...++.+..+ +.|..+|.++++. +-.++. |.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~---~W~~~~~~~d 294 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA---KWGYQKTPHD 294 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE---EEEEESSTTC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE---EEEecCCCCc
Confidence 00134566665666666532 3588899876543 433332 11
Q ss_pred --------cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC--------------Ce---------
Q 040533 219 --------AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA--------------QI--------- 265 (364)
Q Consensus 219 --------~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------------~v--------- 265 (364)
.++. +....+++ .+++.+. .+|.+.++|..+++.+....... ++
T Consensus 295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp SSCCCCCCCCEE-EEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred ccccccCCCCEE-EecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCC
Confidence 1111 12223553 3555554 79999999999999887765332 11
Q ss_pred -----------------EEEEEcCCccceeeeccC-----------------Ccc--------------CCCCeEEEeeC
Q 040533 266 -----------------CGLEWNRHHKEILSGHGF-----------------SSS--------------GDGQKLCLWKY 297 (364)
Q Consensus 266 -----------------~~~~~~~~~~~l~~~~~~-----------------~~~--------------~~~~~i~i~d~ 297 (364)
..++++|+...+++.... ..+ ..++.|..||.
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 235677776666654210 000 23689999999
Q ss_pred CCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
.+++.+.++... ..+....+...+..++.++.||.|+.||..+++.+..+..
T Consensus 452 ~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 452 TTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 999988776533 2233333333566788899999999999999998877653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.9e-07 Score=76.24 Aligned_cols=240 Identities=5% Similarity=-0.057 Sum_probs=150.7
Q ss_pred ccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCCcceeeeeecCC
Q 040533 51 MDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 51 ~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
.+..++..+..+....|+..++.......+. .....+..++|++....|... ...+.|..+++........+....
T Consensus 39 ~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~---~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 115 (349)
T 3v64_C 39 KALGPEPVLLFANRIDIRQVLPHRSEYTLLL---NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115 (349)
T ss_dssp EESSSCCEEEEECBSCEEEECTTSCCEEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred cccccCceeEeecccceEEEeCCCCeeEEee---cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC
Confidence 3334455666777778988888776654333 223457899999866666554 467889999988665444333333
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DD-NLVHVWDHSKMSS 207 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~ 207 (364)
.....+++.+.++.++++-...+.|.+.++..... .......-.....++++|.+..|+... .. +.|..+++....
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~- 193 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG- 193 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-
Confidence 44567888874566666666678899999875432 222333345678999999665555544 34 778888865322
Q ss_pred CcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCc
Q 040533 208 SKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 208 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
...+ ...-.....++++|++..++.+-. ..+.|..+|+........+.. ......+++. .+....+-.
T Consensus 194 ---~~~~~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~---- 263 (349)
T 3v64_C 194 ---RRIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDW---- 263 (349)
T ss_dssp ---CEESCCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEET----
T ss_pred ---cEEEEECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecC----
Confidence 2222 122345688999998878888765 678999999875433333322 2456777773 333333322
Q ss_pred cCCCCeEEEeeCCCCceeeecc
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
..+.|..++..+++....+.
T Consensus 264 --~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 264 --HTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp --TTTEEEEEETTTCCSCEEEE
T ss_pred --CCCeEEEEEccCCCccEEec
Confidence 26778888866666555544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-07 Score=78.74 Aligned_cols=249 Identities=5% Similarity=-0.056 Sum_probs=154.6
Q ss_pred CCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCCcceeeeeecCCCcE
Q 040533 54 GRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKLIRNLEGHDKRV 132 (364)
Q Consensus 54 ~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v 132 (364)
.+...+..+....|+.+++.+.....+. .....+..++|.+.+..|... ...+.|..++++.......+.......
T Consensus 85 ~~~~~l~~~~~~~I~~i~~~~~~~~~~~---~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p 161 (386)
T 3v65_B 85 GPEPVLLFANRIDIRQVLPHRSEYTLLL---NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 161 (386)
T ss_dssp SSCCEEEEECBSCEEEECTTSCCCEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC
T ss_pred cccceeEeecCccceeeccCCCcEEEEe---cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc
Confidence 3345666777788999998877654433 234458899999866655544 467889999987665444333333345
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCCCCcc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DD-NLVHVWDHSKMSSSKC 210 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~ 210 (364)
..+++.+..+.++++-...+.|.+.++..... .............+++.|.+..|+... .. +.|..+++.....
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--- 237 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--- 237 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc---
Confidence 67888874556666666677888888764432 223333335678999998766665554 33 6788888653221
Q ss_pred eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
.......-.....|+++|++..++++-. ..+.|..+|+........+.. ......+++.. +..+.+.. ..
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~-~~ly~td~------~~ 308 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVFE-DSLYWTDW------HT 308 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCSSEEEEEEET-TEEEEEET------TT
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCCCceEEEEEC-CEEEEeeC------CC
Confidence 1112222345688999988878888765 678999999865433333332 24567777733 33333332 27
Q ss_pred CeEEEeeCCCCceeeeccccccceeEEee
Q 040533 290 QKLCLWKYPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
+.|..++..+++.+..+.........|++
T Consensus 309 ~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 78888887777666665433333344433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-07 Score=86.24 Aligned_cols=285 Identities=10% Similarity=0.049 Sum_probs=169.2
Q ss_pred ccEEEEEe-CCeEEEEEC-CCCceeeeeeecCCC---------CCceEEEEcCCCCE----EEEEecCCcEEEEecCCcc
Q 040533 56 NNILAIAL-GLELYLWKQ-ENGEVQKLLKVTGED---------DFPTSISWSQDAKT----LAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 56 ~~~~~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~----l~~~~~dg~i~iw~~~~~~ 120 (364)
+.+++++. ++.|+-+|. .+++..=........ .....++++|.+.. +++++.|+.|.-+|.++|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 34556666 789999999 888864333322110 00123456444444 8888889999999999999
Q ss_pred eeeeeecCCC----cEEE-EEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeecccC---------------
Q 040533 121 LIRNLEGHDK----RVAT-ASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINAHTA--------------- 174 (364)
Q Consensus 121 ~~~~~~~~~~----~v~~-~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~--------------- 174 (364)
.+........ .+.+ .... ++ .+++++ .+|.|+.+|.++++..-........
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred EEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8876553220 1111 1111 44 455554 3789999999988754332211100
Q ss_pred ---------------------cE-EEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCCCCcceEEecc
Q 040533 175 ---------------------EV-CGLKWSNEGNLLASGGDD----------------NLVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 175 ---------------------~v-~~~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~ 216 (364)
.+ ..+++.++..+++.+..+ +.|..+|.++++. +-.++.
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~---~W~~q~ 296 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA---KFGYQK 296 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE---EEEEES
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce---eeEeec
Confidence 00 134556666777777654 3788899876543 333332
Q ss_pred --cc--------cceeEEEEc-cCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC--------------Ce----
Q 040533 217 --HR--------AAVKALAWC-PYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA--------------QI---- 265 (364)
Q Consensus 217 --~~--------~~v~~~~~~-~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------------~v---- 265 (364)
|. .++. +... .+++ .+++.++ .+|.+.++|.++|+.+....... ++
T Consensus 297 ~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred CCCccccccCCCccEE-EeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccc
Confidence 21 1111 1221 3453 3455554 89999999999999887665321 11
Q ss_pred ----------------------EEEEEcCCccceeeecc------------------CC-------c--cC------CCC
Q 040533 266 ----------------------CGLEWNRHHKEILSGHG------------------FS-------S--SG------DGQ 290 (364)
Q Consensus 266 ----------------------~~~~~~~~~~~l~~~~~------------------~~-------~--~~------~~~ 290 (364)
..++++|+...+++... +. . .+ ..+
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 24566776665544210 00 0 01 358
Q ss_pred eEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 291 KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
.|.-||+.+++.+.+.+.. .+...-.....+.+++.++.||.|+.||.++++.+.++..
T Consensus 454 ~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 8999999999988776422 1222112223566788899999999999999998877653
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-08 Score=89.76 Aligned_cols=190 Identities=11% Similarity=0.082 Sum_probs=131.8
Q ss_pred CCCEEEEeeC-CCcEEEEEcccCcceeeeee-cccCcEEEEEE-c-CCCCEEEEEeC------------------CCeEE
Q 040533 141 NGHILTSGSQ-DKSIINHDVRVSNNVTSRIN-AHTAEVCGLKW-S-NEGNLLASGGD------------------DNLVH 198 (364)
Q Consensus 141 ~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~-~-~~~~~l~~~~~------------------d~~i~ 198 (364)
++++++.... +..|.+.|+.+.+. ...+. .....+..+++ + |++++++++++ ++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4556666554 55799999998764 33222 22345788888 5 89999988852 35788
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC-----------------------------------C
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD-----------------------------------G 243 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-----------------------------------~ 243 (364)
+.|..+. +...++.-. +....++++|+|+++++++..+.. +
T Consensus 179 vID~~t~---~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 179 AVDADKW---EVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEETTTT---EEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEECCCC---eEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 9997653 334444321 234678899999888887742211 2
Q ss_pred eEEEEECCC--CeE-EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc------------eeeeccc
Q 040533 244 CIKIWNVQK--GTC-IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT------------KWGELQH 308 (364)
Q Consensus 244 ~i~i~d~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~------------~~~~~~~ 308 (364)
.|.+.|.++ ++. +..+.......++.++|||++++++. ..++.|.++|+.+.+ ...++..
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~-----~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAG-----KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEEC-----TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeC-----CCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 478888887 555 66777777788999999999998875 348899999998653 2333332
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
......++|+|+|...++.-.|+.|.+||+..
T Consensus 330 -G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 -GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred -CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 23468899999994444556799999999987
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-06 Score=81.58 Aligned_cols=269 Identities=11% Similarity=0.066 Sum_probs=172.0
Q ss_pred eecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeec-----CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVT-----GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.++..++++ +..++. +.|.+||..+++........ -....|.++...++|. |..|+.++-|..|+..++..
T Consensus 265 i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~ 342 (795)
T 4a2l_A 265 IRSLAMDSQNRLWIGTF-NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF 342 (795)
T ss_dssp EEEEEECTTSCEEEEES-SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS
T ss_pred EEEEEEcCCCCEEEEeC-ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc
Confidence 5555555544 444544 47899998887654432211 1235799999998887 55677777799998765543
Q ss_pred eeeee------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee--------cccCcEEEEEEcCCCCE
Q 040533 122 IRNLE------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN--------AHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 122 ~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~ 187 (364)
..... .....|.++...+ ++. |..|+.++-|..||..++.. ..... .....|.++...++++.
T Consensus 343 ~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 343 KNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp EEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCE-EEECCC------CCSCSCEEEEEEETTTTE
T ss_pred eEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcE-EEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence 22111 1245689998876 555 55577777799999775542 11111 12357899998888875
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEec-----ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRFR-----DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT- 261 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~- 261 (364)
|..|+.++-|..+|..+.. ...+. .....|.++...+++...+.+ . +-+.+||..+++.......
T Consensus 420 lWigt~~~Gl~~~d~~~~~----~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt----~-~Gl~~~~~~~~~~~~~~~~~ 490 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQ----VENFNQRNSQLVNENVYAILPDGEGNLWLGT----L-SALVRFNPEQRSFTTIEKEK 490 (795)
T ss_dssp EEEEETTTEEEEEETTTCC----EEEECTTTSCCSCSCEEEEEECSSSCEEEEE----S-SCEEEEETTTTEEEECCBCT
T ss_pred EEEEeCcCceeEEeCCCCc----EEEeecCCCCcCCCeeEEEEECCCCCEEEEe----c-CceeEEeCCCCeEEEccccc
Confidence 6777877779999976532 22222 124568899888877433332 3 4588999887765432211
Q ss_pred ------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-------ccccceeEEeecCCCCEEEEE
Q 040533 262 ------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-------HQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 262 ------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~ 328 (364)
...|.++...++|...+.+ .+.+..||..+++. .+. .....|.++..+++|.+.++.
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt--------~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGG--------EEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEE--------SSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred cccccCCceEEEEEECCCCCEEEEe--------CCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 2468899999999877655 35688888776554 221 134568999999999866544
Q ss_pred eCCCcEEEEEeeCC
Q 040533 329 AADETLRFWEAFGP 342 (364)
Q Consensus 329 ~~dg~i~vw~~~~~ 342 (364)
. . .|..||..+.
T Consensus 561 ~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 561 R-E-GFYCFNEKDK 572 (795)
T ss_dssp S-S-CEEEEETTTT
T ss_pred C-C-CceeECCCCC
Confidence 3 3 5777876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-06 Score=72.04 Aligned_cols=233 Identities=6% Similarity=-0.065 Sum_probs=145.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCC----cceeeeeecCCCcE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAET----SKLIRNLEGHDKRV 132 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~----~~~~~~~~~~~~~v 132 (364)
+|..+....|+..|+.+.+...+. .....+..++|++++..|..+ ..++.|..+++.. ......+...-...
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~---~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECCCeEEEEECCCcceEehh---cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 455666778999999887654443 234567899999876655554 4568899999876 22222232222445
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCCCcc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD--NLVHVWDHSKMSSSKC 210 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~ 210 (364)
..+++.+.+++++++-...+.|.+.++..... .............+++.|.+..|+.+... +.|...++... .
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~--- 154 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-D--- 154 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-C---
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-C---
Confidence 78888863555666666778999999874432 22233333567899999966666555543 67888886532 1
Q ss_pred eEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeeeccCCcc
Q 040533 211 LHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 211 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
...+ ...-.....+++++++..++.+-. ..+.|..+|+........... ......+++.. +....+-.
T Consensus 155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~----- 226 (316)
T 1ijq_A 155 IYSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDI----- 226 (316)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEET-----
T ss_pred eEEEEECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEEC-----
Confidence 2222 122345679999998878888765 678999999975333222222 23467777753 33333332
Q ss_pred CCCCeEEEeeCCCCceeeecc
Q 040533 287 GDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~ 307 (364)
..+.|..++..+++.+..+.
T Consensus 227 -~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 227 -INEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp -TTTEEEEEETTTCCCCEEEE
T ss_pred -CCCeEEEEeCCCCcceEEEe
Confidence 27889999887776655553
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.06 E-value=5.1e-06 Score=71.83 Aligned_cols=247 Identities=5% Similarity=-0.090 Sum_probs=155.3
Q ss_pred CccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCc----ceeeeeecCC
Q 040533 55 RNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETS----KLIRNLEGHD 129 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~----~~~~~~~~~~ 129 (364)
+..++..+....|+..++.......+. .....+..++|++.+..|.... ..+.|+.+++... .....+....
T Consensus 82 ~~~~ll~~~~~~I~~i~l~~~~~~~~~---~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 82 SIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp TSCEEEEEETTEEEEECTTSCSCEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred ccceeEEeccceeEEEccCCcceeEec---cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 445777778899999999877654443 3356788999998666665554 5678999988652 2233333344
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSS 207 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~ 207 (364)
.....+++.+..++++++-...+.|.+.+++.... ...+.........+++.|.+..|+.... .+.|...++.....
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 56788888874566666666778899999875442 3333333455789999996666665542 36788888753221
Q ss_pred CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeeeccCC
Q 040533 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
.......-.....|++++++..++.+-. ..+.|..+|+........... -....++++..+ .++...
T Consensus 238 ---~~~~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~--~lywtd--- 307 (400)
T 3p5b_L 238 ---YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTD--- 307 (400)
T ss_dssp ---EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETT--EEEEEE---
T ss_pred ---EEEEECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCC--EEEEec---
Confidence 1122222356789999998878888765 678999999875443333332 134567776433 333322
Q ss_pred ccCCCCeEEEeeCCCCceeeeccccccceeEEe
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 317 (364)
...+.|..+|..+++.+..+.........+.
T Consensus 308 --~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 308 --IINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp --SSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred --CCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 2267888888777777666654333344443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-07 Score=82.77 Aligned_cols=286 Identities=12% Similarity=0.075 Sum_probs=167.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCC-------ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDF-------PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
+.+++++.++.|+-+|..+++..=.......... ...++. .+..+++++.++.|.-+|.++|+.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 3455555546699999999986544433221110 012222 3567888888999999999999988776533
Q ss_pred CC----cEE-EEEeec--CCCC-EEEEee------CCCcEEEEEcccCcceeeeeecccCc-------------------
Q 040533 129 DK----RVA-TASWNH--WNGH-ILTSGS------QDKSIINHDVRVSNNVTSRINAHTAE------------------- 175 (364)
Q Consensus 129 ~~----~v~-~~~~~~--~~~~-~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~------------------- 175 (364)
.. .+. ...... .+++ .+++++ .++.|..+|..+++..... ......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~-~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR-PFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE-ESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec-CCCccccccccCccccccccccccc
Confidence 21 111 111111 0122 566654 3788999999887754322 110000
Q ss_pred ----------------------EEEEEEcCCCCEEEEEeC--------------------C----CeEEEEeCCCCCCCc
Q 040533 176 ----------------------VCGLKWSNEGNLLASGGD--------------------D----NLVHVWDHSKMSSSK 209 (364)
Q Consensus 176 ----------------------v~~~~~~~~~~~l~~~~~--------------------d----~~i~iwd~~~~~~~~ 209 (364)
-..+++.|+..+++.+.. | +.|..+|.++++.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~-- 303 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV-- 303 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE--
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE--
Confidence 012456666667776653 2 5799999877543
Q ss_pred ceEEecc--ccc----ceeE-EEEc---cCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCCCe------------
Q 040533 210 CLHRFRD--HRA----AVKA-LAWC---PYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI------------ 265 (364)
Q Consensus 210 ~~~~~~~--~~~----~v~~-~~~~---~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v------------ 265 (364)
+-.++. |.. .+.. +.+. .+++ .+++.++ .+|.++++|..+|+.+..+.....+
T Consensus 304 -~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 304 -KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp -EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred -EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC--CCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 444322 211 0111 1122 3453 3555554 8999999999999998776543210
Q ss_pred ----------------------------------EEEEEcCCccceeeecc------------------CC---------
Q 040533 266 ----------------------------------CGLEWNRHHKEILSGHG------------------FS--------- 284 (364)
Q Consensus 266 ----------------------------------~~~~~~~~~~~l~~~~~------------------~~--------- 284 (364)
..++++|+...+++... +.
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 13455665555544321 00
Q ss_pred ccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
.....+.|.-||+.+++.+.+..... ++..-.....+.+++.++.||.++.||.++++.+..+..
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 01236889999999999887765432 222222223466888899999999999999998877764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-06 Score=80.06 Aligned_cols=272 Identities=12% Similarity=0.111 Sum_probs=172.1
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeec-----CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVT-----GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.++...++ .+.+++.++.|..||..+++........ -....|.++...++|.+. .|+.+ -|.+|+..+++.
T Consensus 217 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~ 294 (795)
T 4a2l_A 217 IQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSF 294 (795)
T ss_dssp EEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEE
T ss_pred eEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeE
Confidence 334443333 4555655667999998877654332210 124569999998888744 45555 589999877654
Q ss_pred eeeeec-------CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-------cccCcEEEEEEcCCCCE
Q 040533 122 IRNLEG-------HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-------AHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 122 ~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~ 187 (364)
...... ....|.++...+ ++. |..|+.++-|..++.....- ..+. .....|.++...++|.
T Consensus 295 ~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 295 ASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp EEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSS--EEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred EEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccc--eEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 332211 235799998876 665 55677777788898765431 1111 1235699999888876
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEec---------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRFR---------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS 258 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 258 (364)
|..|+.++-|..||..+.. ...+. .....|.++...+++..+.+ |. .++-|..||..+++....
T Consensus 370 lWiGt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt--~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQR----FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GT--HAGGLSILHRNSGQVENF 442 (795)
T ss_dssp EEEEESSSCEEEECTTTCC----EEEECCC------CCSCSCEEEEEEETTTTEEEE-EE--TTTEEEEEETTTCCEEEE
T ss_pred EEEEECCCCeEEEcCCCCc----EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-Ee--CcCceeEEeCCCCcEEEe
Confidence 5557777679999865432 22221 11356889988888741443 22 456799999988764433
Q ss_pred Ee-----cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc------ccccceeEEeecCCCCEEEE
Q 040533 259 VD-----TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ------HQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 259 ~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~ 327 (364)
.. ....|.++...++|...+.+ .+.+..||..+++...... .....|.++...++|.+.+.
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT--------LSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE--------SSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe--------cCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 21 13468899999888877654 3568889987765432221 12357899999999986665
Q ss_pred EeCCCcEEEEEeeCCC
Q 040533 328 AAADETLRFWEAFGPS 343 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~ 343 (364)
.. +.|..|+..+.+
T Consensus 515 t~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 515 GE--EGLSVFKQEGLD 528 (795)
T ss_dssp ES--SCEEEEEEETTE
T ss_pred eC--CceEEEeCCCCe
Confidence 44 568888887654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-07 Score=74.95 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=128.0
Q ss_pred CcEEeeCCCCCCCcceeecccCCCccEEEEEeC---CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE-Eec
Q 040533 32 KEARILDAPNLRNDYYSNMMDWGRNNILAIALG---LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYM 107 (364)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~ 107 (364)
....+++...+....+...+.|+++.++.++.. ..|+.+|+.+++......+.. ........++++.|.. .-.
T Consensus 7 ~~~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 7 QGYRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp CCEEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEEETTEEEEEESS
T ss_pred cceEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEEeCCEEEEEEee
Confidence 334555544555666788888888666555443 489999999999877776543 2332323333454544 446
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec--cc---CcEEEEEEc
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA--HT---AEVCGLKWS 182 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~---~~v~~~~~~ 182 (364)
++.+.+||.++.+.+.++...... ..++ + ++..|+.+..++.|.++|..+.+. ...+.. +. ..++.+.|.
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~-dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEG-WALT--S-DDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCC-CEEE--E-CSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCcCcEEEEEeCCCCc-eEEe--e-CCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe
Confidence 889999999999999998854333 4454 4 666666666688999999987764 333322 11 345677765
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-------------cccceeEEEEccCCCcEEEeec
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-------------HRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
+|+..+..-.+..|.+.|..+++. +..+.. ...-.+.|+++|+++.++++|-
T Consensus 159 -~G~lyanvw~s~~I~vIDp~tG~V---~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPASGKV---VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTTTCBE---EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEECCCCeEEEEECCCCCE---EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 666555555677899999776543 333321 1234578999999989999873
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-06 Score=70.90 Aligned_cols=236 Identities=11% Similarity=0.016 Sum_probs=145.7
Q ss_pred EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC---cceeeeeecccCcEE
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS---NNVTSRINAHTAEVC 177 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~v~ 177 (364)
+|+.+. ...|+..|+.+.+....+. .......++|++.++.++++-..++.|..+++... ......+........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 455554 3569999998876655544 44567899999844555556566789999998751 211222222223457
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 178 GLKWSNEGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 178 ~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
.+++.+.+. +.++-...+.|.+.|+..... .............++++|.+..++.+..+ ..+.|...++.. ...
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG-~~~ 155 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG-VDI 155 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSE---EEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS-CCE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCce---EEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC-CCe
Confidence 889987544 444545678999999764211 11122233457899999977777777541 237899888854 333
Q ss_pred EEE-e-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec-c--ccccceeEEeecCCCCEEEEEeCC
Q 040533 257 HSV-D-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL-Q--HQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 257 ~~~-~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~--~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
..+ . .-.....+++++++..|+.+. ...+.|..+|+.... ...+ . ........+++. .+.++++-...
T Consensus 156 ~~~~~~~~~~P~gla~d~~~~~lY~~D-----~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~ 228 (316)
T 1ijq_A 156 YSLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN 228 (316)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred EEEEECCCCCceEEEEeccCCEEEEEE-----CCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCC
Confidence 333 2 224578999999887777664 236789999986432 2222 1 122345677875 35555555667
Q ss_pred CcEEEEEeeCCCCCcceec
Q 040533 332 ETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~ 350 (364)
+.|..++..+++....+..
T Consensus 229 ~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp TEEEEEETTTCCCCEEEEC
T ss_pred CeEEEEeCCCCcceEEEec
Confidence 8898888777776655543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-07 Score=73.35 Aligned_cols=189 Identities=12% Similarity=0.161 Sum_probs=124.2
Q ss_pred ceeeeeecCCCc--EEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcceeeeeecccCcE--EEEEEcCCCCEEEEEe-
Q 040533 120 KLIRNLEGHDKR--VATASWNHWNGHILTSGSQDK--SIINHDVRVSNNVTSRINAHTAEV--CGLKWSNEGNLLASGG- 192 (364)
Q Consensus 120 ~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~- 192 (364)
+.++++. |... ...+.|+ ++.++.+.+.+| .|+.+|+.+++.. ...... ... ..++. ++..|....
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~-~~~~l~-~~~FgeGit~--~g~~ly~ltw 104 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTL-QQIELG-KRYFGEGISD--WKDKIVGLTW 104 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEE-EEEECC-TTCCEEEEEE--ETTEEEEEES
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEE-EEEecC-CccceeEEEE--eCCEEEEEEe
Confidence 3455564 5443 4778887 567777777766 8999999988753 333222 223 23444 344555444
Q ss_pred CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC------CCeE
Q 040533 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK------AQIC 266 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~v~ 266 (364)
.++.+.+||..+.+ .+.++.... ....+++++..++++.+ ++.|.++|..+.+.+..+... ..++
T Consensus 105 ~~~~v~v~D~~t~~---~~~ti~~~~---eG~glt~dg~~L~~SdG---s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 105 KNGLGFVWNIRNLR---QVRSFNYDG---EGWGLTHNDQYLIMSDG---TPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp SSSEEEEEETTTCC---EEEEEECSS---CCCCEEECSSCEEECCS---SSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred eCCEEEEEECccCc---EEEEEECCC---CceEEecCCCEEEEECC---CCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 68899999977654 355554322 22233456777888653 678999999999998887652 2345
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc------------ccceeEEeecCCCCEEEEEeCC
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ------------TSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~l~~~~~d 331 (364)
.+.|. +|+..+.. -.++.|.+.|..+++.+..+... ....+.|+|+|+++.|+..+..
T Consensus 176 ELe~~-~G~lyan~------w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 176 ELEWV-DGEIFANV------WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEE-TTEEEEEE------TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEE-CCEEEEEE------ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 67776 66544333 23789999999999988776532 1245889999998877777653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-07 Score=73.89 Aligned_cols=178 Identities=15% Similarity=0.219 Sum_probs=119.9
Q ss_pred CceEEEEcCCCCEEEEEecCC--cEEEEecCCcceeeeeecCCCcEE--EEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 89 FPTSISWSQDAKTLAVGYMAS--KLQLWDAETSKLIRNLEGHDKRVA--TASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
....+.|+ ++.+..+.+.+| .|+++|+++++.+..+.... ... .++.. ++.+.+..-.++.+.+||..+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 34788998 666666666666 89999999999998876433 332 34442 445555555688999999988775
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc--cc---cceeEEEEccCCCcEEEeecC
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--HR---AAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~~~~~~g 239 (364)
+..+.... .-..+ +++++.|+.+..++.|.++|..+.+. +..+.- .. ..++.+.|. +| .+++..-
T Consensus 120 -~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v---~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w- 189 (262)
T 3nol_A 120 -VRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTP---VRTITVTAHGEELPELNELEWV-DG-EIFANVW- 189 (262)
T ss_dssp -EEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSE---EEEEECEETTEECCCEEEEEEE-TT-EEEEEET-
T ss_pred -EEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeE---EEEEEeccCCccccccceeEEE-CC-EEEEEEc-
Confidence 44443322 11233 35677777766678899999776543 444332 11 234457776 55 5666654
Q ss_pred CCCCeEEEEECCCCeEEEEEecC-------------CCeEEEEEcCCccceeeec
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTK-------------AQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~ 281 (364)
.++.|.+.|.++++.+..+... .-.+.++++|+++.|++..
T Consensus 190 -~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 190 -QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6889999999999999998653 2358899999877766653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-07 Score=81.55 Aligned_cols=259 Identities=12% Similarity=0.073 Sum_probs=153.1
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCC--CCce-EEEEcCCCCEEEEEec------CCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGED--DFPT-SISWSQDAKTLAVGYM------ASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--~~v~-~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+.+|..+++..-......+. ..+. .... .+..+++++. +|.|..+|.++|+.+..+.
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 34666667899999999999875444432211 0111 1111 2345666654 7899999999999887765
Q ss_pred cCCCc-------------------------------------E-EEEEeecCCCCEEEEeeCC----------------C
Q 040533 127 GHDKR-------------------------------------V-ATASWNHWNGHILTSGSQD----------------K 152 (364)
Q Consensus 127 ~~~~~-------------------------------------v-~~~~~~~~~~~~l~~~~~d----------------g 152 (364)
..... + ..+++.+ ....++.+..+ +
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeEE
Confidence 32211 0 1245666 45556555432 2
Q ss_pred cEEEEEcccCcceeeeeec-c--------cCcEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCCCCcceEEecccc--
Q 040533 153 SIINHDVRVSNNVTSRINA-H--------TAEVCGLKWSNEGN---LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR-- 218 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~-~--------~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 218 (364)
.|..+|.++++........ | ..++. +....+|+ .++.++.+|.++++|..+++. +.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---~w~~~~~~~~ 348 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNL---IVAEKVDPAV 348 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCE---EEEEESSTTC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCE---EeeecccCCc
Confidence 5889999887753332211 1 12222 22224663 577788899999999876532 32221100
Q ss_pred -----------cce--------------------------eEEEEccCCCcEEEeec-----------------------
Q 040533 219 -----------AAV--------------------------KALAWCPYQFNVLASGG----------------------- 238 (364)
Q Consensus 219 -----------~~v--------------------------~~~~~~~~~~~~~~~~~----------------------- 238 (364)
.++ ..++++|+...+++...
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 011 24567777655544321
Q ss_pred --------C---CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 239 --------G---TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 239 --------g---~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
+ ..++.|..||+.+++.+..+.....+....+...+..++.+. .++.|+.+|.++++.+.+++
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~------~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT------LDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEE
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc------CCCeEEEEECCCCCEEEEEe
Confidence 0 135899999999999988887655444433333445555553 39999999999999998876
Q ss_pred ccccc-eeEEeecCCCCEEEE
Q 040533 308 HQTSR-ILELSQSPDGLTVVS 327 (364)
Q Consensus 308 ~~~~~-i~~i~~~~~~~~l~~ 327 (364)
..... -.-+.+..+|+.++.
T Consensus 503 ~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 503 MPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcEeeeEEEEECCEEEEE
Confidence 43321 122345567764443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-06 Score=71.98 Aligned_cols=238 Identities=12% Similarity=0.048 Sum_probs=146.0
Q ss_pred EEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 101 TLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
+|+.+. ...|+..+++... ....+. .......++|++.++.++.+-...+.|..+++.............-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 455543 4679999988663 222222 224567899998455566666677889999987653212222222244667
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE
Q 040533 179 LKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 179 ~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 257 (364)
+++.+. ++++++-...+.|.++++..... .............++++|.+..++.+-.+ ..+.|...++.......
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLR---KVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFI 159 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCEE
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcE---EEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeEE
Confidence 888874 44555555677899999764221 11122334456899999977677776521 35789999886433222
Q ss_pred EEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 258 SVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 258 ~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
.... -.....+++++++..|+.+. ...+.|..+|+..................+++.. +.++.+-...+.|..
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWAD-----AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EEECCCCCccEEEEeccCCEEEEEE-----CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 2222 24578999999877777664 2378899999864333222222334556777753 344555556788998
Q ss_pred EEeeCCCCCcceec
Q 040533 337 WEAFGPSGSGDFVS 350 (364)
Q Consensus 337 w~~~~~~~~~~~~~ 350 (364)
++..+++....+..
T Consensus 234 ~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 234 CNKYTGEGLREIHS 247 (318)
T ss_dssp EETTTCCSCEEEEC
T ss_pred EECCCCCceEEEeC
Confidence 98877776655543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.97 E-value=8.8e-06 Score=70.32 Aligned_cols=247 Identities=11% Similarity=0.014 Sum_probs=153.6
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEV 176 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v 176 (364)
.+|+.+. ...|+..++........+. ....+..++|++.++.++.+-...+.|..+++.... .............
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3555553 5789999988765544443 456788999998445555555567889888886521 1122333334567
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 177 CGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 177 ~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
..+++.+. +++.++-...+.|.+.++..... ...+.........|+++|.+..++.+-.+ ..+.|...++.....
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~---~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI 237 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSE---EEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSC
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCce---EEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCcc
Confidence 88999884 44555555678899998764321 22222233457899999977778777531 347899999865443
Q ss_pred EEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccceeEEeecCCCCEEEEEeCCC
Q 040533 256 IHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 256 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
...+... .....|++++++..|+.+. ...+.|..+|+........... .......+++. .+.++.+-...+
T Consensus 238 ~~~~~~~l~~P~glavd~~~~~lY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 238 YSLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred EEEEECCCCceEEEEEEeCCCEEEEEE-----CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 3333333 5678999999888777764 2367899999865433222221 22345577773 334555556678
Q ss_pred cEEEEEeeCCCCCcceeccCCceeee
Q 040533 333 TLRFWEAFGPSGSGDFVSHLDGLLSL 358 (364)
Q Consensus 333 ~i~vw~~~~~~~~~~~~~~~~~v~~~ 358 (364)
.|..++..+++....+........++
T Consensus 312 ~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp SEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred eEEEEEcCCCCceEEEecCCCCCceE
Confidence 89999977787776665443334444
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-07 Score=72.94 Aligned_cols=190 Identities=13% Similarity=0.103 Sum_probs=125.1
Q ss_pred ceeeeeecCCCc--EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 120 KLIRNLEGHDKR--VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 120 ~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
+.+.++. |... ...+.|+ ++.++.+.+.+|.|+++|+.+++..... .....--..+++.. +++.+..-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEE
Confidence 3445554 4433 4678886 5677888888899999999988754443 22221223455543 2444445578899
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC------CCeEEEEEc
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK------AQICGLEWN 271 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~v~~~~~~ 271 (364)
.+||..+. +.+.++... ..-..++ +++..++++.+ ++.|.++|..+.+.+..+... ..++.+.|.
T Consensus 119 ~V~D~~Tl---~~~~ti~~~-~eGwGLt--~Dg~~L~vSdG---s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 119 FTWSGMPP---QRERTTRYS-GEGWGLC--YWNGKLVRSDG---GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp EEEETTTT---EEEEEEECS-SCCCCEE--EETTEEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEECCcC---cEEEEEeCC-CceeEEe--cCCCEEEEECC---CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 99997764 345555432 2223444 45667777753 789999999999998887642 245677877
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-------------ccceeEEeecCCCCEEEEEeC
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-------------TSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~l~~~~~ 330 (364)
+|+..+.. ..++.|.+.|..+++.+..+... ..-.+.|+++|+++.|+..+.
T Consensus 190 -dG~lyanv------w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 190 -NGVIYANI------WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TTEEEEEE------TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCEEEEEE------CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 66544333 23789999999999988776532 134688999998776665554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-06 Score=79.96 Aligned_cols=276 Identities=10% Similarity=-0.002 Sum_probs=163.1
Q ss_pred eecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeec-----CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVT-----GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.++...+++ +..++. +.|.+||..+++........ -....|.++...++|. |..|+..+-|.+++..++..
T Consensus 213 i~~i~~d~~g~lwigt~-~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~ 290 (781)
T 3v9f_A 213 VRCIYKDTNGNIWIGTS-KGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQF 290 (781)
T ss_dssp EEEEEECTTCCEEEEET-TEEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC--
T ss_pred eeEEEEcCCCCEEEEeC-CcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCee
Confidence 3444444443 555554 48999998877654332211 1245789999888775 55666645688999876653
Q ss_pred eeeee--------------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee--------ecccCcEEEE
Q 040533 122 IRNLE--------------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI--------NAHTAEVCGL 179 (364)
Q Consensus 122 ~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--------~~~~~~v~~~ 179 (364)
..... .....|.++...+ ++. |-.|+.++-|..++........... ......|.++
T Consensus 291 ~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 291 LLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp -------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE
T ss_pred eeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE
Confidence 22111 1345788888876 555 5567767778888876443111100 0123568999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 180 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
...+++. |..|+.++-|..||...................|.++...+++. +.+ |. .++-+..+|..+++.....
T Consensus 369 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWi-gt--~~~Gl~~~~~~~~~~~~~~ 443 (781)
T 3v9f_A 369 CDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWF-GT--YLGNISYYNTRLKKFQIIE 443 (781)
T ss_dssp EECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEE-EE--TTEEEEEECSSSCEEEECC
T ss_pred EEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEE-Ee--ccCCEEEEcCCCCcEEEec
Confidence 8888776 45566556688898653211000000011245688888887774 444 22 4567899998777543322
Q ss_pred e---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-----ccceeEEeecCCCCEEEEEeCC
Q 040533 260 D---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-----TSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 260 ~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d 331 (364)
. ....|.++...++|...+.+ .+.|..||..+++........ ...|.++...++|.+.+. +.+
T Consensus 444 ~~~~~~~~v~~i~~d~~g~lwigt--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~ 514 (781)
T 3v9f_A 444 LEKNELLDVRVFYEDKNKKIWIGT--------HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFG 514 (781)
T ss_dssp STTTCCCCEEEEEECTTSEEEEEE--------TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESS
T ss_pred cCCCCCCeEEEEEECCCCCEEEEE--------CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcC
Confidence 1 23568999999888876654 456889998776543322111 357899999998876654 443
Q ss_pred CcEEEEEeeC
Q 040533 332 ETLRFWEAFG 341 (364)
Q Consensus 332 g~i~vw~~~~ 341 (364)
+-|..|+..+
T Consensus 515 ~Gl~~~~~~~ 524 (781)
T 3v9f_A 515 GGVGIYTPDM 524 (781)
T ss_dssp SCEEEECTTC
T ss_pred CCEEEEeCCC
Confidence 3466677544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-06 Score=71.02 Aligned_cols=237 Identities=8% Similarity=-0.043 Sum_probs=146.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCccee-eeeecCCCcEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLI-RNLEGHDKRVA 133 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~ 133 (364)
..+|..+....|+..++.+........+.+ ...+..++|.+.+..|. +-...+.|..+++..+... ..+...-....
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 345666777899999998764211111111 23467899998655554 4446778999998766322 22222234456
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcce
Q 040533 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~ 211 (364)
.+++.+.++.++++-...+.|.++++..... .............+++.|.+..|+.+. ..+.|...++.... .
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~ 157 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----R 157 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----C
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----e
Confidence 7888874566666666778899999875432 222323445678999998766666655 25788888865321 2
Q ss_pred EEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 212 HRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 212 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
..+ ...-.....++++|++..++.+-. ..+.|..+|+.......... .......+++..++-+ .+- ...
T Consensus 158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~ly-wtd------~~~ 228 (318)
T 3sov_A 158 FIIINSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILY-WTD------WST 228 (318)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEE-EEE------TTT
T ss_pred EEEEECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEE-EEe------cCC
Confidence 222 222345678999998878888765 67899999986433322222 2345677777544322 222 227
Q ss_pred CeEEEeeCCCCceeeecc
Q 040533 290 QKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~ 307 (364)
+.|..++..+++....+.
T Consensus 229 ~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 229 HSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEECCCCCceEEEe
Confidence 889999987777665554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-07 Score=72.77 Aligned_cols=177 Identities=8% Similarity=0.063 Sum_probs=120.8
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE--EEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV--ATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
.....+.|+ ++.+..+.+.+|.|+++|+++++.+..+ -. ... ..+++. .+.+.+..-.++.+.+||..+.+.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~- 128 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR- 128 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE-
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE-
Confidence 334688887 4566667778889999999999998887 32 233 235543 455666666789999999987775
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc--ccc---ceeEEEEccCCCcEEEeecCC
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--HRA---AVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+..+... ..-..++ ++++.|+.+..++.|.++|..+.+. +..+.- +.. .++.+.|. +| .+++..-
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v---~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw-- 198 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL---VGAVQVKLRGQPVELINELECA-NG-VIYANIW-- 198 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE---EEEEECEETTEECCCEEEEEEE-TT-EEEEEET--
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE---EEEEEeCCCCcccccccccEEe-CC-EEEEEEC--
Confidence 4444332 2223444 5677777777789999999776543 443332 222 34567777 55 5666654
Q ss_pred CCCeEEEEECCCCeEEEEEecC--------------CCeEEEEEcCCccceeee
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTK--------------AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~ 280 (364)
.++.|.+.|.++++.+..+... .-.+.++++|+++.|+++
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 6789999999999999988642 246899999987766654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.8e-06 Score=66.48 Aligned_cols=204 Identities=15% Similarity=0.195 Sum_probs=136.2
Q ss_pred eecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
.+.+-...+..++|+|++..|+ +...++.|...|.. ++.++.+.- .......+++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 3446567899999999876555 46678889999987 887777642 235678888887 7777676666778889887
Q ss_pred ccCcce--eeee------ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-------ccccceeEE
Q 040533 160 RVSNNV--TSRI------NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-------DHRAAVKAL 224 (364)
Q Consensus 160 ~~~~~~--~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~ 224 (364)
...... .... ...+.....++|+|.++.|+++.+.....+|.+........+..+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 655421 1111 1234456899999998777777765555555543111111122221 122356899
Q ss_pred EEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC----------CCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK----------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 225 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
+++|....+++... ....+..+|.. ++.+..+... .+...+++.++|+..+++ +.+.++.
T Consensus 179 ~~dp~tg~lliLS~--~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-------E~n~~y~ 248 (255)
T 3qqz_A 179 EFNQQKNTLLVLSH--ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-------EPNRFYR 248 (255)
T ss_dssp EEETTTTEEEEEET--TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-------TTTEEEE
T ss_pred EEcCCCCeEEEEEC--CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-------CCceEEE
Confidence 99998888888876 78999999975 5566666543 267899999999866654 2556666
Q ss_pred eeC
Q 040533 295 WKY 297 (364)
Q Consensus 295 ~d~ 297 (364)
+.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=9.5e-07 Score=80.16 Aligned_cols=262 Identities=12% Similarity=0.095 Sum_probs=153.4
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCC--CCce-EEEEcC---CCC-EEEEEec------CCcEEEEecCCccee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGED--DFPT-SISWSQ---DAK-TLAVGYM------ASKLQLWDAETSKLI 122 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--~~v~-~~~~s~---~~~-~l~~~~~------dg~i~iw~~~~~~~~ 122 (364)
+.+++++.++.|+-+|..+++..-......+. ..+. ...... +++ .+++++. +|.|.-+|.++|+.+
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence 45667778999999999999875444432211 0111 111111 233 5666653 789999999999887
Q ss_pred eeeecCCCcE-----------------------------------------EEEEeecCCCCEEEEeeC-----------
Q 040533 123 RNLEGHDKRV-----------------------------------------ATASWNHWNGHILTSGSQ----------- 150 (364)
Q Consensus 123 ~~~~~~~~~v-----------------------------------------~~~~~~~~~~~~l~~~~~----------- 150 (364)
.........+ ..+++.| ...+++.+..
T Consensus 198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGS
T ss_pred eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccc
Confidence 7654311000 1245566 5566665552
Q ss_pred ---------C----CcEEEEEcccCcceeeeeec-cc--------CcEEEEEEc-CCCC---EEEEEeCCCeEEEEeCCC
Q 040533 151 ---------D----KSIINHDVRVSNNVTSRINA-HT--------AEVCGLKWS-NEGN---LLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 151 ---------d----g~i~~~d~~~~~~~~~~~~~-~~--------~~v~~~~~~-~~~~---~l~~~~~d~~i~iwd~~~ 204 (364)
| +.|..+|.++++..-..... |. .++. +... .+|+ .++.++.+|.++++|.++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 57999999988754432221 21 2222 2222 4664 788899999999999776
Q ss_pred CCCCcceEEecccc-------------cc--------------------------------eeEEEEccCCCcEEEeec-
Q 040533 205 MSSSKCLHRFRDHR-------------AA--------------------------------VKALAWCPYQFNVLASGG- 238 (364)
Q Consensus 205 ~~~~~~~~~~~~~~-------------~~--------------------------------v~~~~~~~~~~~~~~~~~- 238 (364)
++. +....... .+ -..++++|+...+++...
T Consensus 356 G~~---lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 356 GKL---QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp CCE---EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCE---ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 532 22221110 00 013566666544444220
Q ss_pred -----------------------------CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 239 -----------------------------GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 239 -----------------------------g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
...+|.|..||+.+++.+.+.....+...-.....+..++.+. .|
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~------~d 506 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT------GD 506 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC------TT
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC------CC
Confidence 0136889999999999988776554433322223455555553 39
Q ss_pred CeEEEeeCCCCceeeeccccccce-eEEeecCCCC-EEEEE
Q 040533 290 QKLCLWKYPHMTKWGELQHQTSRI-LELSQSPDGL-TVVSA 328 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~~~~~~i-~~i~~~~~~~-~l~~~ 328 (364)
+.++.||.++++.+.+++...... .-+.|..+|+ |+++.
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 999999999999999887543321 2255666776 44443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-06 Score=71.16 Aligned_cols=237 Identities=8% Similarity=-0.003 Sum_probs=136.1
Q ss_pred eecccCCCc-c-EEEEEeCCeEEEEECCCCceeeeeeecC-----------------CCCCceEEEEcC-CCCEEEEEec
Q 040533 48 SNMMDWGRN-N-ILAIALGLELYLWKQENGEVQKLLKVTG-----------------EDDFPTSISWSQ-DAKTLAVGYM 107 (364)
Q Consensus 48 ~~~~~~~~~-~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~-----------------~~~~v~~~~~s~-~~~~l~~~~~ 107 (364)
...++|+++ + +++...++.|..|+..+++......... ....+..+++.+ +++ |+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 345667664 3 5555567899999988765432221000 013578999998 554 555544
Q ss_pred CCcEEEEecCCcceeeeeec-----CCCcEEEEEeecCCCCEEEEeeC-----------------CCcEEEEEcccCcce
Q 040533 108 ASKLQLWDAETSKLIRNLEG-----HDKRVATASWNHWNGHILTSGSQ-----------------DKSIINHDVRVSNNV 165 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~ 165 (364)
.+.|..+|..+++. ..+.. .......+++.+.++++.++-.. ++.|..+|..++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~- 177 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET- 177 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE-
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE-
Confidence 55688888776542 22211 11346778887734555554322 36688888764442
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC-----
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG----- 239 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g----- 239 (364)
..+.........++++|+++.|+.+ ...+.|..|++....... ...+....+ ...++++++|. ++++..+
T Consensus 178 -~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~ 253 (322)
T 2fp8_A 178 -TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGN 253 (322)
T ss_dssp -EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSC-EEEEEEEETTSS
T ss_pred -EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCC-EEEEecCccccc
Confidence 2121222345679999999866655 456889999987432211 112211223 67899999985 5554321
Q ss_pred ---CCCCeEEEEECCCCeEEEEEecC-----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 240 ---TQDGCIKIWNVQKGTCIHSVDTK-----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 240 ---~~d~~i~i~d~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
...+.|..+|. .++.+..+... ..+..+++ .++.+.++.. ..+.|..+++..
T Consensus 254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~------~~~~i~~~~~~~ 313 (322)
T 2fp8_A 254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTL------FHGSVGILVYDK 313 (322)
T ss_dssp TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECS------SCSEEEEEEC--
T ss_pred ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeec------CCCceEEEeccc
Confidence 01467888887 47777766543 23555655 3454444432 267788887653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-07 Score=85.14 Aligned_cols=260 Identities=12% Similarity=0.036 Sum_probs=143.2
Q ss_pred eEEEEECCCCceeeeeeecC-CCCCceEEEEcCCCCEEEEEec-CCcEEEEecCCcceeeeeecCCCc-EEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTG-EDDFPTSISWSQDAKTLAVGYM-ASKLQLWDAETSKLIRNLEGHDKR-VATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~ 142 (364)
.+.+||..+++...+..+.. +.....++++.++++++++|+. ++.+.+||..+++....-..+..+ -.+++..+ ++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg 298 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DG 298 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TS
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CC
Confidence 68899999988766554432 3334456788899999999984 457999998876544322211111 13445556 88
Q ss_pred CEEEEee-CC-----CcEEEEEcccCcceeeeee-----cccCcEEEEEEcCCCCEEEEEeCC---------CeEEEEeC
Q 040533 143 HILTSGS-QD-----KSIINHDVRVSNNVTSRIN-----AHTAEVCGLKWSNEGNLLASGGDD---------NLVHVWDH 202 (364)
Q Consensus 143 ~~l~~~~-~d-----g~i~~~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~ 202 (364)
++++.|+ .+ ..+.+||..+..- ..+. .....-....+..++..++.++.+ ..+..||.
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W--~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~ 376 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTW--TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT 376 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEE--EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred eEEEEeCcccCCcccccceEeCCCCCcc--eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence 8999988 34 4689999876542 1110 000000001122344455555444 35678887
Q ss_pred CCCCCCcceEEecc------cccceeEEEEccCCCcEEEeecCCCCC-----------eEEEEECCCCeEEEEE--ecC-
Q 040533 203 SKMSSSKCLHRFRD------HRAAVKALAWCPYQFNVLASGGGTQDG-----------CIKIWNVQKGTCIHSV--DTK- 262 (364)
Q Consensus 203 ~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~g~~d~-----------~i~i~d~~~~~~~~~~--~~~- 262 (364)
.............. ....-.++.|...+..+++.|+ .++ .+.+||..+..-.... ...
T Consensus 377 ~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG--~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~ 454 (656)
T 1k3i_A 377 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGG--SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF 454 (656)
T ss_dssp STTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECC--BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS
T ss_pred CCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeC--CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC
Confidence 65432111111100 0112234445444457888875 221 6888888776654432 111
Q ss_pred -CCeEEEEEcCCccceeeeccCCc-----cCCCCeEEEeeCCCCce--eeeccccccceeEEeecCCCCEEEEEeC
Q 040533 263 -AQICGLEWNRHHKEILSGHGFSS-----SGDGQKLCLWKYPHMTK--WGELQHQTSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 263 -~~v~~~~~~~~~~~l~~~~~~~~-----~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 330 (364)
..-.++...|+++.++.|..-.. ...-..+.+||..+.+- +..+...........+.|+|+.++.|+.
T Consensus 455 ~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 455 ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 22345567788988887753100 01125689999876432 1112222222234556789999999885
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-06 Score=66.69 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=122.1
Q ss_pred ceeeeeecCCC--cEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcceeeeeecccC-cEEEEEEcCCCCEEEEEeCC
Q 040533 120 KLIRNLEGHDK--RVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNVTSRINAHTA-EVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 120 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d 194 (364)
+.+.++. |.. -...+.|++ +.++.+.+.+| .|+.+|+.+++.. ........ --..++... +++....-.+
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~-~~~~l~~~~fgeGi~~~~-~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRIL-QRAEVPPPYFGAGIVAWR-DRLIQLTWRN 84 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEE-EEEECCTTCCEEEEEEET-TEEEEEESSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEE-EEEeCCCCcceeEEEEeC-CEEEEEEeeC
Confidence 3455553 543 466888874 56666666654 8999999988753 33322211 113344432 3344444578
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC------CCeEEE
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK------AQICGL 268 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~v~~~ 268 (364)
+.+.+||..+. +.+.++.... .-..++ +++..++++-+ ++.|.++|..+.+.+..+... ..++.+
T Consensus 85 ~~v~v~D~~tl---~~~~ti~~~~-~Gwglt--~dg~~L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 85 HEGFVYDLATL---TPRARFRYPG-EGWALT--SDDSHLYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp SEEEEEETTTT---EEEEEEECSS-CCCEEE--ECSSCEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CEEEEEECCcC---cEEEEEeCCC-CceEEe--eCCCEEEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 89999997764 3455554322 223444 56777888763 788999999999998887653 345667
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-------------ccceeEEeecCCCCEEEEEeC
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-------------TSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~l~~~~~ 330 (364)
.+. +|+..+.. -.++.|.+.|..+++.+..+... ..-.+.|+++|+++.|+..+.
T Consensus 156 e~~-~G~lyanv------w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 156 EWV-NGELLANV------WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEE-TTEEEEEE------TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEe-CCEEEEEE------CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 766 55544333 22779999999999988776521 134588999998877766664
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-06 Score=76.89 Aligned_cols=258 Identities=13% Similarity=0.086 Sum_probs=149.9
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCC--CCce-EEEEcCCCCEEEEEec------CCcEEEEecCCcceeeeeecC
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGED--DFPT-SISWSQDAKTLAVGYM------ASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--~~v~-~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~ 128 (364)
+++++.++.|+.+|..+++..-......+. ..++ ..... ++ .+++++. +|.|+-+|.++|+.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 677778899999999999875444332211 0111 11111 34 5555553 789999999999988776532
Q ss_pred CCc-------------------------------------E-EEEEeecCCCCEEEEeeCC----------------CcE
Q 040533 129 DKR-------------------------------------V-ATASWNHWNGHILTSGSQD----------------KSI 154 (364)
Q Consensus 129 ~~~-------------------------------------v-~~~~~~~~~~~~l~~~~~d----------------g~i 154 (364)
... + ..+++.+ ...+++.+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceE
Confidence 211 0 1345556 56666666554 378
Q ss_pred EEEEcccCcceeeeeec-cc--------CcEEEEEEc-CCC---CEEEEEeCCCeEEEEeCCCCCCCcceEEeccc----
Q 040533 155 INHDVRVSNNVTSRINA-HT--------AEVCGLKWS-NEG---NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH---- 217 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~-~~--------~~v~~~~~~-~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---- 217 (364)
..+|.++++..-..... |. .++. +... .+| ..++.++.+|.++++|.++++. +......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---lw~~~~~~~~~ 356 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL---VSANKLDDTVN 356 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE---EEEEESSTTCC
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE---eecccccCCcc
Confidence 89999988753332222 21 2222 2222 466 4677788999999999876542 2222100
Q ss_pred ---------ccce--------------------------eEEEEccCCCcEEEee-------------------------
Q 040533 218 ---------RAAV--------------------------KALAWCPYQFNVLASG------------------------- 237 (364)
Q Consensus 218 ---------~~~v--------------------------~~~~~~~~~~~~~~~~------------------------- 237 (364)
..++ ..++++|+...+++..
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 0000 2355666543332210
Q ss_pred -----cCC------CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 238 -----GGT------QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 238 -----~g~------~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
... .+|.|..||+.+++.+.......+...-.....+..++.+. .|+.++.||.++++.+.++
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt------~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT------LDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEE
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEEC------CCCeEEEEECCCCCEEEEe
Confidence 001 34789999999999988876543332222222444555553 4999999999999999887
Q ss_pred cccccce-eEEeecCCCC-EEEEE
Q 040533 307 QHQTSRI-LELSQSPDGL-TVVSA 328 (364)
Q Consensus 307 ~~~~~~i-~~i~~~~~~~-~l~~~ 328 (364)
+.....+ .-+.+..+|+ |+++.
T Consensus 511 ~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 511 KIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eCCCCcEeccEEEEeCCEEEEEEE
Confidence 6433211 2245556776 44443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-05 Score=73.71 Aligned_cols=274 Identities=7% Similarity=-0.030 Sum_probs=164.5
Q ss_pred ecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeec-----CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 49 NMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVT-----GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.++...++ .+.++..++.|..||..+++........ -....|.++...+++.+.+ |+.+ -+.+||..+++..
T Consensus 166 ~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~ 243 (781)
T 3v9f_A 166 WTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFT 243 (781)
T ss_dssp EEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEE
Confidence 33443333 3555555558999998877654332111 1135688999888887554 5555 5899998766543
Q ss_pred eeee-------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee-------------ecccCcEEEEEEc
Q 040533 123 RNLE-------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI-------------NAHTAEVCGLKWS 182 (364)
Q Consensus 123 ~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-------------~~~~~~v~~~~~~ 182 (364)
.... .....|.++...+ ++. |..|+..+-|.++|..+........ ......|.++...
T Consensus 244 ~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D 321 (781)
T 3v9f_A 244 NFHNNPGNIHGALSSYIFSIKQLK-DNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD 321 (781)
T ss_dssp C-----------CCCCEEEEEECT-TSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC
T ss_pred EEEcCCCccccccCceEEEEEECC-CCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe
Confidence 2211 1235688888875 554 5556665568888876543111000 1134578999988
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec----------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR----------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
++|. |-.|+.++-|..++..... ...+. .....|.++...+++...+.+ .++-|..||..+
T Consensus 322 ~~g~-lWigt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt----~~~Gl~~~~~~~ 392 (781)
T 3v9f_A 322 SFNN-IWIGTWGGGINFISNAPPT----FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGT----DGGGINVFENGK 392 (781)
T ss_dssp SSCC-EEEEEBSSCEEEECSSCCS----CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEE----BSSCEEEEETTE
T ss_pred CCCC-EEEEecCCeEEEeCCCCCc----ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEe----CCCcEEEEECCC
Confidence 8886 5556666668888865432 12221 123568899888877544433 356688999876
Q ss_pred CeEEEEE----ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCCCEEE
Q 040533 253 GTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 253 ~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~ 326 (364)
+...... .....|.++...++|.+.+... ++.+..++..+++...... .....|.++...++|.+.+
T Consensus 393 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~-------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 393 RVAIYNKENRELLSNSVLCSLKDSEGNLWFGTY-------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp EEEECC-----CCCSBEEEEEECTTSCEEEEET-------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred CeEEEccCCCCCCCcceEEEEECCCCCEEEEec-------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE
Confidence 5432211 1235688999888887766542 5778889887665432221 2346789999988886555
Q ss_pred EEeCCCcEEEEEeeCCCC
Q 040533 327 SAAADETLRFWEAFGPSG 344 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~ 344 (364)
|+. +.|..++..+++.
T Consensus 466 -gt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 466 -GTH-AGVFVIDLASKKV 481 (781)
T ss_dssp -EET-TEEEEEESSSSSC
T ss_pred -EEC-CceEEEeCCCCeE
Confidence 444 5688888776543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-06 Score=71.52 Aligned_cols=237 Identities=9% Similarity=0.009 Sum_probs=137.6
Q ss_pred CceEEEEcC-CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC-CC----cEEEEEcccC
Q 040533 89 FPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ-DK----SIINHDVRVS 162 (364)
Q Consensus 89 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~~~d~~~~ 162 (364)
....++++| ++..|.++...+.|+.+|++.+...... ........++|++ +++.|+.+.. ++ .+.+++....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 567899998 4566666665588999998876544433 3556688999999 8885555543 22 2333443322
Q ss_pred cceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
......+.. ......++++| ++.++++-...+.|..++...... ..+.... .......++|+|+++.++++.. .
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~~-~~~~P~gia~~pdG~~lyv~d~--~ 290 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTIQ-DSGWEFHIQFHPSGNYAYIVVV--N 290 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEECS-SSSCCEEEEECTTSSEEEEEET--T
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEcC-CCCcceeEEEcCCCCEEEEEEC--C
Confidence 111122221 23456788999 677666666778999999764321 0111111 1234678999999976777754 6
Q ss_pred CCeEEEEECCC--CeE--EEEEecC----------------CCeE-EEEEc--------CCccceeeeccCCccCCCCeE
Q 040533 242 DGCIKIWNVQK--GTC--IHSVDTK----------------AQIC-GLEWN--------RHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 242 d~~i~i~d~~~--~~~--~~~~~~~----------------~~v~-~~~~~--------~~~~~l~~~~~~~~~~~~~~i 292 (364)
.+.|..++... ++. ...+... .... .++.. ++|.+.++-.. .+.|
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~------n~~I 364 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE------NHCI 364 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG------GTEE
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC------CcEE
Confidence 78899987653 222 1222111 0112 34442 33444444322 6678
Q ss_pred EEeeCCCCceeeecccc------------------ccceeEEeecCC-CCEEEEEeCCCcEEEEEee
Q 040533 293 CLWKYPHMTKWGELQHQ------------------TSRILELSQSPD-GLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 293 ~i~d~~~~~~~~~~~~~------------------~~~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~ 340 (364)
+.++ .++... .+.+. -.....|+++|+ +.++++-..++.|+.++++
T Consensus 365 ~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 365 RILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8877 344332 22111 124688999994 6555555566788887764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.4e-05 Score=69.27 Aligned_cols=232 Identities=7% Similarity=-0.081 Sum_probs=147.2
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCCcceeeeeecCCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKLIRNLEGHDKRVAT 134 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 134 (364)
+.+|..+..+.|+..++.+........+.+ -..+..++|++.+..|..+ ..++.|..++++.......+.........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 456777788999999998765443333322 3467899999976666554 46788999998755443333333345667
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCCcceE
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~ 212 (364)
+++.+..++++++-...+.|.+.++..... .......-.....+++.|....|+.... .+.|...++.... ..
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~----~~ 159 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE----RT 159 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc----eE
Confidence 888774566666666678899999875432 2222233355789999996556665552 4678777765432 22
Q ss_pred EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeE
Q 040533 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i 292 (364)
.+...-.....+++++++..++.+-. ..+.|..+|+................++++..+ .++.+. ...+.|
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~--~ly~tD-----~~~~~I 230 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLPHPFGLTQYQD--YIYWTD-----WSRRSI 230 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCSCEEEEEEETT--EEEEEE-----TTTTEE
T ss_pred EEECCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCCCceEEEEECC--EEEEec-----CCCCEE
Confidence 22223456789999998878888765 678999999976443222222344567777653 333332 226777
Q ss_pred EEeeCCCCce
Q 040533 293 CLWKYPHMTK 302 (364)
Q Consensus 293 ~i~d~~~~~~ 302 (364)
...|..+++.
T Consensus 231 ~~~dk~tg~~ 240 (628)
T 4a0p_A 231 ERANKTSGQN 240 (628)
T ss_dssp EEEETTTCCS
T ss_pred EEEECCCCCc
Confidence 7777665543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.2e-05 Score=64.92 Aligned_cols=269 Identities=10% Similarity=0.050 Sum_probs=148.2
Q ss_pred eeecccCCC-ccEEEEEeCCeEEEEECCCCceeeeeee--cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGR-NNILAIALGLELYLWKQENGEVQKLLKV--TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~-~~~~~~~~~~~i~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.+..+.+.+ +..++++..+.|. .....++.=..... ......+.++.+.+ +..++ ++..|.|.. ..+.|+.-.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCE
T ss_pred cEEEEEECCCCcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCce
Confidence 356666654 4566677777663 33444432111111 12244688999986 44444 445665443 333344333
Q ss_pred eee---cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 124 NLE---GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 124 ~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.+. .+...+..+.+.+ ++..++++ .+|.|..- .+.++.-..........+..+.+.+++.+++.+...+..+-.
T Consensus 113 ~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~ 189 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTW 189 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEE
T ss_pred ECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEe
Confidence 322 2334577888776 66666555 45554321 122333233333455678999999998877766544333334
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-----CCeEEEEEcCCcc
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-----AQICGLEWNRHHK 275 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-----~~v~~~~~~~~~~ 275 (364)
|-. +...+.+. ......+..+.+.+++. +++.+ .+|.+++.+...++.-..+... ..+..+.+.+++.
T Consensus 190 d~g-G~tW~~~~--~~~~~~~~~~~~~~~g~-~~~~~---~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 190 EPG-QTAWEPHN--RTTSRRLHNMGFTPDGR-LWMIV---NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp CTT-CSSCEEEE--CCSSSCEEEEEECTTSC-EEEEE---TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred CCC-CCceeECC--CCCCCccceeEECCCCC-EEEEe---CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 421 12222221 23455688899998874 55544 4787777643334433333211 3478899998887
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeeccc---cccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---QTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.++++. ++.+ ++..+.++....+.. ....+.++.|.+++ .+++++.+|.|.-++
T Consensus 263 ~~~~g~-------~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 263 VWLAGG-------AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEES-------TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEEEeC-------CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 777653 5655 344444554444432 23567888887555 466677889776654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-05 Score=70.02 Aligned_cols=239 Identities=8% Similarity=-0.018 Sum_probs=140.6
Q ss_pred CCceEEEEcCC--CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---C-cEEEEEccc
Q 040533 88 DFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---K-SIINHDVRV 161 (364)
Q Consensus 88 ~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~~~d~~~ 161 (364)
.....++|+|+ ...|..+...+.|+.++..+++...... .......+++++ +++++++.... . .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence 35679999985 4456666554889999998776554433 455688999999 88855544321 1 233333322
Q ss_pred CcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
.......+. .......++++| ++.+.++-..++.|+.+|...+.....+... +....-..++|+|++..++++-.
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~-- 292 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYN-- 292 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEET--
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeC--
Confidence 211011111 223456788999 6766666667788999997643210111111 11222346999999976777754
Q ss_pred CCCeEEEEECC--CCeE--EEEEecC----------------CCeEEEEE---------cCCccceeeeccCCccCCCCe
Q 040533 241 QDGCIKIWNVQ--KGTC--IHSVDTK----------------AQICGLEW---------NRHHKEILSGHGFSSSGDGQK 291 (364)
Q Consensus 241 ~d~~i~i~d~~--~~~~--~~~~~~~----------------~~v~~~~~---------~~~~~~l~~~~~~~~~~~~~~ 291 (364)
..+.|+.++.. ++.. ...+... .....+++ .++|.+.++-.. .+.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~------n~~ 366 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD------SHT 366 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT------TTE
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC------CCE
Confidence 67899998865 2321 1111110 23566888 667766655432 678
Q ss_pred EEEeeCCCCceeeecccc------------------ccceeEEeec-CCCCEEEEEeCCCcEEEEEee
Q 040533 292 LCLWKYPHMTKWGELQHQ------------------TSRILELSQS-PDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~~~------------------~~~i~~i~~~-~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|+.++. ++... .+.+. -.....|+++ ++|.++++=..++.|+.++++
T Consensus 367 I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 367 VRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 888884 44332 22111 1236789999 566666666667788888764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-05 Score=72.26 Aligned_cols=234 Identities=6% Similarity=-0.074 Sum_probs=144.5
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCc----ceeeeeecCCCc
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETS----KLIRNLEGHDKR 131 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~----~~~~~~~~~~~~ 131 (364)
.++..+....|+..++...+...+. .....+..++|.+....|+ +-...+.|+.+++... .....+......
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~---~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred cccccccccceeEeeccCCcceeee---cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 4566666778888888776554333 3355678999998655554 4445678988888753 223333323445
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCCc
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSSSK 209 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~ 209 (364)
...|++.+..++++++-...+.|.+.++..... ...+.........|++.|.+..|+.... .+.|...++....
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--- 548 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--- 548 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc---
Confidence 677888874456666666778999999874442 3333334456889999997666666553 2678888875321
Q ss_pred ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCcc
Q 040533 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
....+...-.....|++++.+..|+++-. ..+.|..+++........+... ....+|++..+ .|+.+.
T Consensus 549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~--~lYwtD----- 619 (791)
T 3m0c_C 549 IYSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTD----- 619 (791)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT--EEEEEE-----
T ss_pred eEEEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC--EEEEEE-----
Confidence 11222223356789999988778888755 6788999998655444444332 23456666433 444433
Q ss_pred CCCCeEEEeeCCCCceeeec
Q 040533 287 GDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~ 306 (364)
...+.|...+..+++.+..+
T Consensus 620 ~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 620 IINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTTEEEEEETTTCCCCEEE
T ss_pred CCCCEEEEEeCCCCcceEEe
Confidence 22677887777666554444
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-06 Score=81.44 Aligned_cols=196 Identities=10% Similarity=0.054 Sum_probs=112.0
Q ss_pred CceEEEEc-CCCCEEEEEec-CC----cEEEEecCCc-ceee-eeecCCCcEEEEEeecCCCCEEEEeeCC-----CcEE
Q 040533 89 FPTSISWS-QDAKTLAVGYM-AS----KLQLWDAETS-KLIR-NLEGHDKRVATASWNHWNGHILTSGSQD-----KSII 155 (364)
Q Consensus 89 ~v~~~~~s-~~~~~l~~~~~-dg----~i~iw~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~ 155 (364)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+| +++.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 99999987654 23 4999999988 6332 121 1234688999 88777666654 2577
Q ss_pred EEEcccCcce-eeeee-cccCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCCCCcc-eEEec-ccccceeEEEEcc
Q 040533 156 NHDVRVSNNV-TSRIN-AHTAEVCGLKWSNEGNLLASGG---DDNLVHVWDHSKMSSSKC-LHRFR-DHRAAVKALAWCP 228 (364)
Q Consensus 156 ~~d~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~-~~~~~-~~~~~v~~~~~~~ 228 (364)
++++.++... ...+. ........+.|+|||++|+..+ ....|+++|+..... .. +..+. .......++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee
Confidence 7888765421 12222 2234467889999999888765 234688889876421 11 12222 2334455555544
Q ss_pred CCCcEEEeecC--CCCCeEEEEECCCC-eEEE-EEecCC--CeEEEEEcCCccceeeeccCCccCCCC--eEEEeeC
Q 040533 229 YQFNVLASGGG--TQDGCIKIWNVQKG-TCIH-SVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQ--KLCLWKY 297 (364)
Q Consensus 229 ~~~~~~~~~~g--~~d~~i~i~d~~~~-~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i~i~d~ 297 (364)
+..+++.... .....|..+|+.++ +... .+.... .+..+.+. +..++.... .++ .|.++++
T Consensus 330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~-----~~g~~~l~~~dl 398 (751)
T 2xe4_A 330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR-----RAGLTRIWTMMA 398 (751)
T ss_dssp -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE-----ETTEEEEEEEEC
T ss_pred -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE-----eCCEEEEEEEec
Confidence 4455555431 12347888887652 2222 233333 34455554 444443321 144 4666675
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-06 Score=82.62 Aligned_cols=242 Identities=12% Similarity=0.039 Sum_probs=132.6
Q ss_pred eeecccCC-Ccc-EEEEEeC--C----eEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-----CcEE
Q 040533 47 YSNMMDWG-RNN-ILAIALG--L----ELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-----SKLQ 112 (364)
Q Consensus 47 ~~~~~~~~-~~~-~~~~~~~--~----~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~ 112 (364)
......|| |++ .++.+.+ | .|+++|+.++ +.... .+. .....++|+|||+.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 46678899 875 5654432 2 5999999998 63211 111 123578999999988887765 2588
Q ss_pred EEecCCcce--eeeee-cCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCc-ce--eeeeecccCcEEEEEEcC
Q 040533 113 LWDAETSKL--IRNLE-GHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSN-NV--TSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 113 iw~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~-~~--~~~~~~~~~~v~~~~~~~ 183 (364)
++++.++.. ...+. ........+.|+| ++++|+..+. ...|.++|+.++. .. ............++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 888877642 22222 2234467789999 8888776553 3368888887653 22 222233344556666554
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCCCe--EEEEEC-----
Q 040533 184 EGNLLASGGDD----NLVHVWDHSKMSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQDGC--IKIWNV----- 250 (364)
Q Consensus 184 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~----- 250 (364)
.+.+++....+ ..|..+|+......+.. +..+.. .+..+.+. +..++++.. .++. |.++|+
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~~lv~~~~--~~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SNYLVVAGR--RAGLTRIWTMMADSQDG 403 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SSEEEEEEE--ETTEEEEEEEECCTTTS
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CCEEEEEEE--eCCEEEEEEEecccccc
Confidence 44444444333 36777776542111110 122222 34455554 556777665 5664 566675
Q ss_pred --CCCeEEEEEecCCC--eEEEEE----cCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 251 --QKGTCIHSVDTKAQ--ICGLEW----NRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 251 --~~~~~~~~~~~~~~--v~~~~~----~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
.+++....+..... +..+.+ ++++..++.... +...-..++.+|+.+++
T Consensus 404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~s--s~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYS--SLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEE--ETTEEEEEEEECTTTCC
T ss_pred cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEe--CCCCCCEEEEEECCCCc
Confidence 34431333433322 333433 346655543321 11223567888887665
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.9e-06 Score=71.34 Aligned_cols=149 Identities=11% Similarity=0.121 Sum_probs=92.0
Q ss_pred ecccCCC---ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-CC----cEEEEecCCcc
Q 040533 49 NMMDWGR---NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-AS----KLQLWDAETSK 120 (364)
Q Consensus 49 ~~~~~~~---~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg----~i~iw~~~~~~ 120 (364)
..++++| +.++++...+.|+.+|+.++....+. ........++|++++++|+++.. ++ .+.+++. .+.
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 4456664 23455544478889998877654443 24556889999999996666654 22 2333443 333
Q ss_pred ee--eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEE-eCCCe
Q 040533 121 LI--RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASG-GDDNL 196 (364)
Q Consensus 121 ~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~ 196 (364)
.. ..+.. ......++++|.++.++++-..++.|..++...... ..... ........++|+|++++|+.+ ...+.
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 22 22322 234567788885666666666778899999875442 11111 122346789999999955544 46778
Q ss_pred EEEEeCC
Q 040533 197 VHVWDHS 203 (364)
Q Consensus 197 i~iwd~~ 203 (364)
|..++..
T Consensus 294 I~~~~~d 300 (430)
T 3tc9_A 294 ILRSDYD 300 (430)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9988754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-06 Score=80.46 Aligned_cols=249 Identities=13% Similarity=0.056 Sum_probs=133.0
Q ss_pred eEEEEcC-CCCEEEEEecCC-----------cEEEEecCCcceee--eeec-CCCcEEEEEeecCCCCEEEEeeC-CCcE
Q 040533 91 TSISWSQ-DAKTLAVGYMAS-----------KLQLWDAETSKLIR--NLEG-HDKRVATASWNHWNGHILTSGSQ-DKSI 154 (364)
Q Consensus 91 ~~~~~s~-~~~~l~~~~~dg-----------~i~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~l~~~~~-dg~i 154 (364)
.+.++.+ +++.++.|+.+. .+.+||..+++... .+.. +.....++++.+ ++.+++.|+. +..+
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKT 267 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCce
Confidence 3667777 888888887543 58899998875432 2221 222333466667 8999999984 4589
Q ss_pred EEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEEEe-CC-----CeEEEEeCCCCCCCcceEEe--cccccceeEEE
Q 040533 155 INHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLASGG-DD-----NLVHVWDHSKMSSSKCLHRF--RDHRAAVKALA 225 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~ 225 (364)
.+||..+..- ......+. ..-.+++..+++++++.|+ .+ ..+.+||..+..- ..+... ......-....
T Consensus 268 ~~yd~~t~~W-~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W-~~~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 268 SLYDSSSDSW-IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW-TSLPNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEEEGGGTEE-EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE-EEETTSCSGGGCCCCTTGG
T ss_pred EEecCcCCce-eECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc-eeCCCccccccccccccce
Confidence 9999886642 11111111 1123455667899999988 34 4689999765421 111000 00000000011
Q ss_pred EccCCCcEEEeecC-------CCCCeEEEEECCCCeEEEEEecC----------CCeEEEEEc-CCccceeeeccCCc--
Q 040533 226 WCPYQFNVLASGGG-------TQDGCIKIWNVQKGTCIHSVDTK----------AQICGLEWN-RHHKEILSGHGFSS-- 285 (364)
Q Consensus 226 ~~~~~~~~~~~~~g-------~~d~~i~i~d~~~~~~~~~~~~~----------~~v~~~~~~-~~~~~l~~~~~~~~-- 285 (364)
+..++ .+++.++. .....+..||..+.......... ..-.++.+. .+++.++.|..-..
T Consensus 346 ~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 346 YRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 12223 33343320 02345788998876644332211 112334443 35666666542100
Q ss_pred cCCCC---eEEEeeCCCCceeeec--cccccc-eeEEeecCCCCEEEEEeCC-----------CcEEEEEeeCCC
Q 040533 286 SGDGQ---KLCLWKYPHMTKWGEL--QHQTSR-ILELSQSPDGLTVVSAAAD-----------ETLRFWEAFGPS 343 (364)
Q Consensus 286 ~~~~~---~i~i~d~~~~~~~~~~--~~~~~~-i~~i~~~~~~~~l~~~~~d-----------g~i~vw~~~~~~ 343 (364)
..... .+.+||..+..-.... ..+... -.+++..|+|++++.|+.+ ..+.+||..+.+
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 00011 6888888765433222 112222 2345667899999999864 468999986643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-05 Score=66.56 Aligned_cols=223 Identities=11% Similarity=0.037 Sum_probs=130.4
Q ss_pred eeecccCCCcc-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC--cEEEEecCCccee
Q 040533 47 YSNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS--KLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~ 122 (364)
....++|++++ ++.+. .++.|..||..+. ....... ...+..+++.++|+++++..... .|..++..+++..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 45667887754 55554 4689999998764 3333332 34688999999999666554322 4777777777654
Q ss_pred eeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee---------eecccCcEEEEEEcCCCCEEEEEe
Q 040533 123 RNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR---------INAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 123 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
..... .......++..+ ++..+++-..++.|.++|...+...+.. ....-...+.+ +++++.|+.+.
T Consensus 109 ~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 33221 122234445444 4444555446888888887643211110 00111234555 77877665554
Q ss_pred -CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE--EEecC-CCeEEE
Q 040533 193 -DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH--SVDTK-AQICGL 268 (364)
Q Consensus 193 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~-~~v~~~ 268 (364)
..+.|..+|+...........+. .......++++++| .++++.. ..+.|.++|.. ++... .+... ....++
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG-~l~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEG-NLYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTC-CEEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCC-CEEEEeC--CCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 56789999986411111112221 11345779999998 5566543 47889999975 65533 23333 558899
Q ss_pred EEc---CCccceeeec
Q 040533 269 EWN---RHHKEILSGH 281 (364)
Q Consensus 269 ~~~---~~~~~l~~~~ 281 (364)
+|. |++..|+++.
T Consensus 261 a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EECCSTTTTTEEEEEE
T ss_pred EEecccCCCCEEEEEC
Confidence 998 7877776654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-07 Score=86.57 Aligned_cols=246 Identities=6% Similarity=-0.083 Sum_probs=144.7
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC----cceeeeeecCCCcE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET----SKLIRNLEGHDKRV 132 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~----~~~~~~~~~~~~~v 132 (364)
.+..+..+.|+..++.+.+...+.. ....+..++|.+.+..|+.+. ..+.|+.+++.. ......+.......
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P 455 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 455 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSC---CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C
T ss_pred eEEecCccceEEEeCCCCcceeeec---cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc
Confidence 4445556788888888766543332 234577899998777666654 457899999875 22222222222234
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCCCCcc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-D-NLVHVWDHSKMSSSKC 210 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~ 210 (364)
..+++.+..++++++-...+.|.++++..... ...+.........+++.|.+..|+.+.. . +.|..+++.....
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--- 531 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--- 531 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---
Confidence 56788753566666656678899999874432 2222222344578899986555555442 2 6777777643211
Q ss_pred eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCccC
Q 040533 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSG 287 (364)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~ 287 (364)
.......-.....|+|+|++..|+++-. ..+.|..+++........+... .....|++..+ .++... .
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd-----~ 602 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTD-----I 602 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEEC-----S
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEe-----C
Confidence 1111122344678999998878888765 6789999998653332222211 23456666554 333322 2
Q ss_pred CCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
..+.|..++..+++.+..+.........|++.
T Consensus 603 ~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 603 INEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp TTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred CCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 26889999988888777765433334555443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.4e-05 Score=60.95 Aligned_cols=204 Identities=11% Similarity=0.182 Sum_probs=126.0
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
.+.+-...+..++|+|.++.++++...++.|...|.. ++ +...+. .-......+++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3445556799999999445566667788889988987 44 344432 22256788999988876666556788999987
Q ss_pred CCCCCCcceEEec------ccccceeEEEEccCCCcEEEeecCCCCC-eEEEEEC-CCCeEEEEEec--------CCCeE
Q 040533 203 SKMSSSKCLHRFR------DHRAAVKALAWCPYQFNVLASGGGTQDG-CIKIWNV-QKGTCIHSVDT--------KAQIC 266 (364)
Q Consensus 203 ~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~-~~~~~~~~~~~--------~~~v~ 266 (364)
........+.... ..+.....++|+|.+..++++.- .+. .|..|+- .....+..+.. -..+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC--cCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 6543211122221 12345689999999877777653 333 4555551 11111222211 13578
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc---------ccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ---------TSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---------~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
+++++|....+++-. .....+..+|.. ++.+..+.-. -.....|+|.++|+ |+..++-+.++++
T Consensus 177 ~l~~dp~tg~lliLS-----~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f 249 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLS-----HESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRF 249 (255)
T ss_dssp EEEEETTTTEEEEEE-----TTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred eEEEcCCCCeEEEEE-----CCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence 999999766555443 347888999965 4454443211 12457899999997 4445777766555
Q ss_pred E
Q 040533 338 E 338 (364)
Q Consensus 338 ~ 338 (364)
.
T Consensus 250 ~ 250 (255)
T 3qqz_A 250 T 250 (255)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.6e-05 Score=67.92 Aligned_cols=246 Identities=11% Similarity=0.007 Sum_probs=154.1
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
.+|+.+ ..+.|+..++++......+. ..-..+..++|++.++.++++-..++.|..+++..... .............
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~G 84 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEG 84 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcce
Confidence 355555 46789999998765433332 12346789999995555566666778899998875432 2223222245678
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE
Q 040533 179 LKWSNEGNLL-ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 179 ~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 257 (364)
+++.+.+..| ++-...+.|.+.++..... + ......-.....++++|....++.+--| ..+.|...++.......
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~--~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHR-Q--VLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTC-E--EEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcE-E--EEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceEE
Confidence 8888755544 4445567899999764321 1 1122333456899999976678777521 35788888886554444
Q ss_pred EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 258 SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
....-.....+++++++..|+.+. ...+.|..+++..... ..+.........+++.. +...++-...+.|...
T Consensus 161 l~~~~~~P~GlalD~~~~~LY~aD-----~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 161 LVPNVGRANGLTIDYAKRRLYWTD-----LDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred EECCCCCcceEEEccccCEEEEEE-----CCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 444446688999999888777765 2367899999865443 33333334456788765 3444444457888888
Q ss_pred EeeCCCCCcceeccCCceeee
Q 040533 338 EAFGPSGSGDFVSHLDGLLSL 358 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~ 358 (364)
|..+++....+......+.++
T Consensus 234 dk~tg~~~~~l~~~~~~p~~i 254 (628)
T 4a0p_A 234 NKTSGQNRTIIQGHLDYVMDI 254 (628)
T ss_dssp ETTTCCSCEEEECSCCSCCEE
T ss_pred ECCCCCceEEEecCCCCccee
Confidence 877777665555433333343
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-05 Score=68.69 Aligned_cols=200 Identities=9% Similarity=0.009 Sum_probs=112.6
Q ss_pred eecccCCC----ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-----cEEEEecCC
Q 040533 48 SNMMDWGR----NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-----KLQLWDAET 118 (364)
Q Consensus 48 ~~~~~~~~----~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~ 118 (364)
...++|++ +.++.+...+.|+.+|..++...... .....+..++++++|+ |+.+...+ .+...+...
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34567776 23444444488999998887765443 3455689999999999 44444321 233333322
Q ss_pred ccee-eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEE-eCCC
Q 040533 119 SKLI-RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASG-GDDN 195 (364)
Q Consensus 119 ~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~ 195 (364)
+... ..+. .......++++|.++.++++-..++.|+.+|..++........ +....-..++|+|+++.|+.+ ...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 2110 1122 2234466788885566666666778899999875542111111 112223469999999855554 4567
Q ss_pred eEEEEeCCCCCC-CcceEEeccc---------------ccceeEEEE---------ccCCCcEEEeecCCCCCeEEEEEC
Q 040533 196 LVHVWDHSKMSS-SKCLHRFRDH---------------RAAVKALAW---------CPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 196 ~i~iwd~~~~~~-~~~~~~~~~~---------------~~~v~~~~~---------~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
.|+.++...... ......+.+. -.....+++ .+++ .++++-. ..+.|+.++.
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~--~n~~I~~~~~ 372 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDR--DSHTVRVLTP 372 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEET--TTTEEEEECT
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEEC--CCCEEEEECC
Confidence 899987652110 0001111111 123456888 5555 5666644 5788999885
Q ss_pred CCCeEE
Q 040533 251 QKGTCI 256 (364)
Q Consensus 251 ~~~~~~ 256 (364)
++...
T Consensus 373 -~G~v~ 377 (433)
T 4hw6_A 373 -EGRVT 377 (433)
T ss_dssp -TSEEE
T ss_pred -CCCEE
Confidence 56443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.1e-05 Score=70.09 Aligned_cols=236 Identities=11% Similarity=-0.001 Sum_probs=145.4
Q ss_pred EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEE
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVC 177 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~ 177 (364)
+|+.+. ...|+..++........+. ....+..++|.+.++.++++-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 454443 4568888887665544443 456678999998455555666667788888887431 11223332334567
Q ss_pred EEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 178 GLKWSNEGNLLA-SGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 178 ~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.|++.+.+..|+ +-...+.|.+.++.... ...+ .........|+++|.+..|+.+-.| ..+.|...++.....
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~----~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI 549 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSS----EEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCe----EEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCce
Confidence 899988665444 44567889999976432 2222 2233457899999987678877531 337899999865444
Q ss_pred EEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccceeEEeecCCCCEEEEE-eCC
Q 040533 256 IHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRILELSQSPDGLTVVSA-AAD 331 (364)
Q Consensus 256 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~-~~d 331 (364)
...+... .....|++++.+..|+.+. ...+.|..+++........+.. .-....+|++. +..|+.+ ...
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD-----~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEe-----CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 4333333 5688999998877777664 2367899999865443333322 12234566664 3345444 456
Q ss_pred CcEEEEEeeCCCCCcceec
Q 040533 332 ETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~ 350 (364)
+.|...+..+++.+..+..
T Consensus 623 ~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp TEEEEEETTTCCCCEEEEC
T ss_pred CEEEEEeCCCCcceEEeec
Confidence 7788888777766666543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-05 Score=66.18 Aligned_cols=245 Identities=11% Similarity=0.026 Sum_probs=141.0
Q ss_pred CceEEEEcC-CCCEEEEEe-cCCcEEEEecCCcceeeeeecC---CCcEEEEEe-------ecCCCCEEEEeeCCC-c--
Q 040533 89 FPTSISWSQ-DAKTLAVGY-MASKLQLWDAETSKLIRNLEGH---DKRVATASW-------NHWNGHILTSGSQDK-S-- 153 (364)
Q Consensus 89 ~v~~~~~s~-~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~l~~~~~dg-~-- 153 (364)
....|+|+| +...|.++. ..+.|++.|++++......... ......++| ++ +++.|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 356899998 344455544 3467999998877665544322 235889999 99 887565555443 2
Q ss_pred ----EEEEEcccCccee-----eeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC-------CCCCC--------
Q 040533 154 ----IINHDVRVSNNVT-----SRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHS-------KMSSS-------- 208 (364)
Q Consensus 154 ----i~~~d~~~~~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~-------~~~~~-------- 208 (364)
|.+++........ ..+... .....++++| ++.++++-..++.|..+|+. +....
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 5566533311111 122221 2345778899 45556666678889999986 33220
Q ss_pred ---cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC--CCCeEE--EEEecC----------------CCe
Q 040533 209 ---KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV--QKGTCI--HSVDTK----------------AQI 265 (364)
Q Consensus 209 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~--~~~~~~--~~~~~~----------------~~v 265 (364)
+.+... +.......++|+|++..++++-. ..+.|+.++. ..+... ..+... ...
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 011111 12344578999999976666654 6788998654 333321 122110 112
Q ss_pred E-EEEEc-------CCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc------------------------ccce
Q 040533 266 C-GLEWN-------RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ------------------------TSRI 313 (364)
Q Consensus 266 ~-~~~~~-------~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------------------------~~~i 313 (364)
. .+... +++.+.++-.. ...|+.++ .++. +.++.+. -...
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~------N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRL------NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGG------GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred eEEEEEccccccccCCCeEEEEECC------CCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 3 44444 44555444332 77888888 4443 3333211 1235
Q ss_pred eEEeecCC-CCEEEEEeCCCcEEEEEeeCCCCCc
Q 040533 314 LELSQSPD-GLTVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 314 ~~i~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
..|+++++ |.++++=..+..|+.+++.......
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred cEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 78999997 7666666677889999987765443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6e-05 Score=68.85 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=137.6
Q ss_pred EEEEEecCCcEEEEecCCcc-eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEE
Q 040533 101 TLAVGYMASKLQLWDAETSK-LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~ 179 (364)
+|+-+ ....|+..++.... ........-.....++|++.++.++++-...+.|..+++.........+.........+
T Consensus 11 ~~~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 11 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CEEEE-CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred eEEEe-ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 44444 35678888887543 22222223456789999984444444544567888888875432122233333568899
Q ss_pred EEcCCCCEEE-EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE
Q 040533 180 KWSNEGNLLA-SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS 258 (364)
Q Consensus 180 ~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 258 (364)
++.+.+..|+ +-...+.|.+.++..... .......-.....|+++|.+..++.+--| ..+.|...++........
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~---~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l 165 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLR---KVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFII 165 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEE
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCE---EEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEE
Confidence 9998555444 445678999999764321 11122334456789999987678877532 356788888764333333
Q ss_pred Ee-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 259 VD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 259 ~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
.. .-.....+++++++..|+.+. ...+.|..+++..........+.......|++..+ ...++-...+.|...
T Consensus 166 ~~~~~~~P~Glald~~~~~LY~aD-----~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~ 239 (619)
T 3s94_A 166 INSEIYWPNGLTLDYEEQKLYWAD-----AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC 239 (619)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEE-----TTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEE
T ss_pred EeCCCCCCcEEEEEccCCEEEEEe-----CCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEE
Confidence 32 234578999999877777664 23678999988654333222222233457777655 344444466789999
Q ss_pred EeeCCCCCccee
Q 040533 338 EAFGPSGSGDFV 349 (364)
Q Consensus 338 ~~~~~~~~~~~~ 349 (364)
|..+++....+.
T Consensus 240 d~~tg~~~~~i~ 251 (619)
T 3s94_A 240 NKYTGEGLREIH 251 (619)
T ss_dssp ESSSCCCCEECC
T ss_pred ECCCCcccEEEe
Confidence 988777655444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.4e-05 Score=62.33 Aligned_cols=231 Identities=10% Similarity=0.088 Sum_probs=126.6
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCce-eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEV-QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
.+..+.++++.+++++..+.|+. ....++. ........+...+..+.+.+++..++++ .+|.|.. ..+.|+.-...
T Consensus 81 ~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~ 157 (327)
T 2xbg_A 81 RFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL 157 (327)
T ss_dssp EEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE
T ss_pred cEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe
Confidence 45566666666677777775554 3333432 2222111233457788887777666655 4565432 22334332222
Q ss_pred -ecCCCcEEEEEeecCCCCEEEEeeCCCcEEE-EEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 126 -EGHDKRVATASWNHWNGHILTSGSQDKSIIN-HDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 126 -~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
......+..+.+.| ++.+++.+. +|.+.. .|-. +.............+..+.+.+++..++ ++.+|.+++.+..
T Consensus 158 ~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D 233 (327)
T 2xbg_A 158 VQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPD 233 (327)
T ss_dssp ECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETT
T ss_pred ecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCC
Confidence 23456788999998 777776664 444433 3321 2211122223456788999999887554 5567887776422
Q ss_pred CCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec----CCCeEEEEEcCCcccee
Q 040533 204 KMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----KAQICGLEWNRHHKEIL 278 (364)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~ 278 (364)
.+.....+... ......+..+.+.+++ .+++.+. ++.+ ++....++.-..+.. ...+..+.+.+++..++
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~---~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~ 308 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG---AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFI 308 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEES---TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEE
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCC-EEEEEeC---CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEE
Confidence 12111111110 0122357888898865 5666653 6766 445555544444431 35678888877777666
Q ss_pred eeccCCccCCCCeEEEee
Q 040533 279 SGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d 296 (364)
++. +|.|.-++
T Consensus 309 ~G~-------~G~i~~~~ 319 (327)
T 2xbg_A 309 LGQ-------KGILLRYV 319 (327)
T ss_dssp ECS-------TTEEEEEC
T ss_pred EcC-------CceEEEEc
Confidence 653 77776665
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.54 E-value=6.4e-07 Score=83.10 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=132.7
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEe-eCCCcEEEEEcccC---cceeeeeecccCcEEEEEEcC
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSG-SQDKSIINHDVRVS---NNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~---~~~~~~~~~~~~~v~~~~~~~ 183 (364)
.+.|+..++.+.+....+.. ...+..++|.+ .+..|+.+ ...+.|..+++... ......+.........|++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 45788888877665544443 34567899998 55545444 45678999998741 111222211122345678875
Q ss_pred C-CCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE-e
Q 040533 184 E-GNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV-D 260 (364)
Q Consensus 184 ~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~ 260 (364)
. ++++++-...+.|.++++.... ...+ .........++++|.+..++++..+ ..+.|..+++.... ...+ .
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~----~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~-~~~l~~ 536 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVK----RKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD-IYSLVT 536 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCC----EEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCC-CCEESC
T ss_pred eCCcEEEEeccCCeEEEEecCCCc----eEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCC-eeEEEe
Confidence 4 4445554566789999875421 2222 2223456789999987777776531 23778888775432 2222 1
Q ss_pred c-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 261 T-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 261 ~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
. -.....|+++|++..|+.+. ...+.|..+++........+. ........|++..+ .++++....+.|..+
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEE-----TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCCCCccEEEEeccCCEEEEEe-----cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 1 24467899999887777664 236789999986433322222 11233456666544 344555566889999
Q ss_pred EeeCCCCCccee
Q 040533 338 EAFGPSGSGDFV 349 (364)
Q Consensus 338 ~~~~~~~~~~~~ 349 (364)
+..+++.+..+.
T Consensus 611 d~~~G~~~~~i~ 622 (699)
T 1n7d_A 611 NRLTGSDVNLLA 622 (699)
T ss_dssp ETTTEEEEECCC
T ss_pred EccCCCceEEee
Confidence 876665544443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00027 Score=64.64 Aligned_cols=232 Identities=7% Similarity=-0.068 Sum_probs=134.2
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcce-eeeeecCCCcEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKL-IRNLEGHDKRVATA 135 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~~~~~v~~~ 135 (364)
++.-+....|+..++........... ..-..+..++|++.+..|..+. ..+.|..++++.... ...+...-.....+
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CEEEECSSBEEEECCC---------C-BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEE-cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 56667788999999876532112222 2344578999999777666554 467888888875532 22333333567889
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCCcceEE
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSSSKCLHR 213 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~ 213 (364)
++.+.+++++++-...+.|.+.++..... .......-.....+++.|.+..|+.... .+.|...++..... ...
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~---~~l 165 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FII 165 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEE
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce---EEE
Confidence 99884555666666778999999875432 2222233345678999997656665553 35677666553211 111
Q ss_pred ecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeE
Q 040533 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 214 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i 292 (364)
....-.....+++++++..++.+-. ..+.|..+|+.......... ......++++..+ .++.+. ...+.|
T Consensus 166 ~~~~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td-----~~~~~V 236 (619)
T 3s94_A 166 INSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTD-----WSTHSI 236 (619)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEEC---------CCCEEESSS--EEEEEC-----TTTCSE
T ss_pred EeCCCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEec-----CCCCEE
Confidence 2223345688999998778888765 67889999986543332222 1123456676655 333332 225677
Q ss_pred EEeeCCCCcee
Q 040533 293 CLWKYPHMTKW 303 (364)
Q Consensus 293 ~i~d~~~~~~~ 303 (364)
...|..+++..
T Consensus 237 ~~~d~~tg~~~ 247 (619)
T 3s94_A 237 LACNKYTGEGL 247 (619)
T ss_dssp EEEESSSCCCC
T ss_pred EEEECCCCccc
Confidence 77777665443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00055 Score=58.18 Aligned_cols=271 Identities=9% Similarity=0.065 Sum_probs=176.2
Q ss_pred CCccEEEEEe----CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC
Q 040533 54 GRNNILAIAL----GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 54 ~~~~~~~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
..+..+++-. +..|.|.|+..+......... --+.-.+|..+.+|.=. ..++.|||+++...++.+.- .
T Consensus 33 ESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~ 105 (494)
T 1bpo_A 33 ESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-T 105 (494)
T ss_dssp EETTEEEEEECCTTCCEEEEEETTSTTSCEEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-S
T ss_pred ecCceEEEEecCCCCCeEEEEECCCCCcceecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-C
Confidence 3456666654 247888888876543222221 22556789888887764 67899999999998888774 4
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc----CcEEEEEEcCCCCEEEEEe-------CCCeEE
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT----AEVCGLKWSNEGNLLASGG-------DDNLVH 198 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------~d~~i~ 198 (364)
+.|.-=.|- +.+.|+..+ +..|+-|++.....+.+.+..|. ..|.....+++.++++..+ -.|.+.
T Consensus 106 e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 106 DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp SCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred CCceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEE
Confidence 456666675 455666555 35799999986555666665553 5677888889999877554 236788
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccC--CCcEEEeec-CCCCCeEEEEECCCC--------eEEEEEe--c---C
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPY--QFNVLASGG-GTQDGCIKIWNVQKG--------TCIHSVD--T---K 262 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~-g~~d~~i~i~d~~~~--------~~~~~~~--~---~ 262 (364)
+|..+.. ..+.+.+|.+....+....+ ...+++.+. ....+.+++.++... +....+. . .
T Consensus 183 LYS~er~----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 183 LYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp EEESTTC----CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred Eeecccc----ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence 9987653 35667777765555444321 123444432 012378999998542 1111111 1 1
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
.-..++..++....++.-+. -|.+++||+.++.++..-+-....|..-+.+....=++.....|.|.--.++..
T Consensus 259 DFPvamqvs~kygviyviTK------~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp CCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceeEEEecccCCEEEEEec------CceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 22566777877776666543 899999999999999887777777776666655555666668888777777665
Q ss_pred CC
Q 040533 343 SG 344 (364)
Q Consensus 343 ~~ 344 (364)
..
T Consensus 333 ~i 334 (494)
T 1bpo_A 333 NI 334 (494)
T ss_dssp TH
T ss_pred cc
Confidence 43
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.0003 Score=59.63 Aligned_cols=229 Identities=13% Similarity=0.136 Sum_probs=118.9
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce--eeeee---cCCCcEEEEEeecCC----CCEEEEeeCC-----C
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--IRNLE---GHDKRVATASWNHWN----GHILTSGSQD-----K 152 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~---~~~~~v~~~~~~~~~----~~~l~~~~~d-----g 152 (364)
-.....++|.|+|+++++ ..+|.|.+++ +++. +..+. ........++|+| + +.+.++-... +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCcc
Confidence 345789999999985555 5679999998 3432 11111 1245688999999 5 4444443332 5
Q ss_pred cEEEEEcccCc-----ceeeeee---cccCcEEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCC-----
Q 040533 153 SIINHDVRVSN-----NVTSRIN---AHTAEVCGLKWSNEGNLLASGGD-------------DNLVHVWDHSKMS----- 206 (364)
Q Consensus 153 ~i~~~d~~~~~-----~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~----- 206 (364)
.|..++..... .+...+. ........++|.|+|.+.++.+. .|.|.-++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 67778776321 1111122 11123368999999976666432 1456666654200
Q ss_pred ------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCC-------eEEEEECCC----------------CeEEE
Q 040533 207 ------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG-------CIKIWNVQK----------------GTCIH 257 (364)
Q Consensus 207 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-------~i~i~d~~~----------------~~~~~ 257 (364)
....+.. .++ .....++|+|+...++++-.+ .+. .|.+..... ..++.
T Consensus 186 f~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 186 FLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp TTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred ccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 0011111 122 235678999944456665432 222 233322111 01122
Q ss_pred EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce------eeeccccccceeEEeecCCCCEEEEEe
Q 040533 258 SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK------WGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
.+..+.....+++ .+|..+++.. ..+.|...++..... ...+-.....+..+++.|||.++++..
T Consensus 263 ~~~~~~ap~G~~~-~~G~l~v~~~------~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGFPPGNLAF-FRGDLYVAGL------RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCCCEEEEEE-ETTEEEEEET------TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCCCCcceEE-ECCEEEEEEC------CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2222234556666 3455444432 256777777654321 112212235678999999997666653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00013 Score=60.51 Aligned_cols=194 Identities=11% Similarity=0.200 Sum_probs=121.9
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC----CC---EEEEEeC---CCeEEEEeCCCCCCCcc
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE----GN---LLASGGD---DNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---d~~i~iwd~~~~~~~~~ 210 (364)
...+++.....+-+.+||+ .++. +..+.. +.++.+..-|+ |+ ++++... +++|.+|++.... ..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~-l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKM-LHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCE-EEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcE-EEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--Cc
Confidence 3456676777889999999 4554 444432 55666666552 22 2333333 5789999764211 11
Q ss_pred eEEecc------cc-cceeEEEE--ccCCC--cEEEeecCCCCCeEEEEECC-------CCeEEEEEecCCCeEEEEEcC
Q 040533 211 LHRFRD------HR-AAVKALAW--CPYQF--NVLASGGGTQDGCIKIWNVQ-------KGTCIHSVDTKAQICGLEWNR 272 (364)
Q Consensus 211 ~~~~~~------~~-~~v~~~~~--~~~~~--~~~~~~~g~~d~~i~i~d~~-------~~~~~~~~~~~~~v~~~~~~~ 272 (364)
+..+.. .. ..+..+++ +|... +++++. .+|.+..|++. +.+.++++...+++..+...+
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd 189 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD 189 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC
Confidence 333311 11 45677887 77543 344443 68999999882 346788888889999999999
Q ss_pred CccceeeeccCCccCCCCeEEEeeCC-----CCceeeecc-cc-ccceeEEee--cCCCC-EEEEEe-CCCcEEEEEee-
Q 040533 273 HHKEILSGHGFSSSGDGQKLCLWKYP-----HMTKWGELQ-HQ-TSRILELSQ--SPDGL-TVVSAA-ADETLRFWEAF- 340 (364)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~i~i~d~~-----~~~~~~~~~-~~-~~~i~~i~~--~~~~~-~l~~~~-~dg~i~vw~~~- 340 (364)
....|+.+.. +..|..++.. +++.+..+. ++ ...+..|++ .++++ +|++++ .++++.+||..
T Consensus 190 ~~g~Lyv~eE------d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 190 EYGRLYIAEE------DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp TTTEEEEEET------TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred CCCeEEEecc------cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 9888888743 5567777754 344554442 22 235777877 45555 666665 57799999986
Q ss_pred CCCCCccee
Q 040533 341 GPSGSGDFV 349 (364)
Q Consensus 341 ~~~~~~~~~ 349 (364)
+.+.+..|.
T Consensus 264 ~~~~vg~f~ 272 (355)
T 3amr_A 264 KNKYVADFR 272 (355)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEEE
Confidence 444455553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00015 Score=60.28 Aligned_cols=196 Identities=14% Similarity=0.194 Sum_probs=124.0
Q ss_pred CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC----C---EEEEeeC---CCcEEEEEcccCcceeee
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG----H---ILTSGSQ---DKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~---~l~~~~~---dg~i~~~d~~~~~~~~~~ 168 (364)
..+++.....+-+.+||+ +|+.++.+.. +.++.+..-| +- + ++++... +++|.+|++......+..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 345555557788999999 7888888764 5677777765 22 1 3344443 478999977422212333
Q ss_pred eec------cc-CcEEEEEE--cCC-CC-EEEEEeCCCeEEEEeCCCC----CCCcceEEecccccceeEEEEccCCCcE
Q 040533 169 INA------HT-AEVCGLKW--SNE-GN-LLASGGDDNLVHVWDHSKM----SSSKCLHRFRDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 169 ~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 233 (364)
+.. .. ..+..+++ +|. +. ++++...+|.+..|++... ...+.++++.. .+.+..+...+....+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 311 11 45666777 774 43 6788888999999988432 12344566553 4578888898877667
Q ss_pred EEeecCCCCCeEEEEECC-----CCeEEEEEecC---CCeEEEEE--cCCcc-ceeeeccCCccCCCCeEEEeeCC-CCc
Q 040533 234 LASGGGTQDGCIKIWNVQ-----KGTCIHSVDTK---AQICGLEW--NRHHK-EILSGHGFSSSGDGQKLCLWKYP-HMT 301 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~-----~~~~~~~~~~~---~~v~~~~~--~~~~~-~l~~~~~~~~~~~~~~i~i~d~~-~~~ 301 (364)
++.- ++.-|..++.+ +++.+..+... ..+..|++ .++++ +|++++ ..++...+||.. +.+
T Consensus 195 yv~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs-----QG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 195 YIAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS-----QGNSSYAIYDRQGKNK 266 (355)
T ss_dssp EEEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE-----GGGTEEEEEESSTTCC
T ss_pred EEec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc-----CCCCEEEEEECCCCCc
Confidence 6643 56557777754 34556555333 46788887 45555 555543 227899999996 666
Q ss_pred eeeecc
Q 040533 302 KWGELQ 307 (364)
Q Consensus 302 ~~~~~~ 307 (364)
.+..+.
T Consensus 267 ~vg~f~ 272 (355)
T 3amr_A 267 YVADFR 272 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00051 Score=60.32 Aligned_cols=154 Identities=11% Similarity=0.115 Sum_probs=94.4
Q ss_pred ecccCCC---ccEEEEEeC-CeEEEEECCCCceeeeeeecC-CCCCceEEEE-------cCCCCEEEEEecCC-------
Q 040533 49 NMMDWGR---NNILAIALG-LELYLWKQENGEVQKLLKVTG-EDDFPTSISW-------SQDAKTLAVGYMAS------- 109 (364)
Q Consensus 49 ~~~~~~~---~~~~~~~~~-~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~-------s~~~~~l~~~~~dg------- 109 (364)
..|+++| ++++++... +.|++.|.+++.+..+..... ....+..++| +++++.|+++...+
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 3456665 235444443 579999999888766554321 2345899999 99999776665543
Q ss_pred cEEEEecCC-ccee-----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc-------cCcc-----------e
Q 040533 110 KLQLWDAET-SKLI-----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR-------VSNN-----------V 165 (364)
Q Consensus 110 ~i~iw~~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~-------~~~~-----------~ 165 (364)
.|.+++... +... ..+... .....++.+|.++.++++-..++.|..+|+. ++.. .
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred eEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 266665443 2221 222211 2335678888566777777788899999997 3432 0
Q ss_pred eeeee-cccCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCC
Q 040533 166 TSRIN-AHTAEVCGLKWSNEGNLLASG-GDDNLVHVWDHS 203 (364)
Q Consensus 166 ~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~ 203 (364)
...+. ........++|+|+++.|+.+ ...+.|+.++..
T Consensus 301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 01111 223446789999999955444 456788886643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0011 Score=54.64 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=106.6
Q ss_pred ceeecccCCC--ccEEEEE-eCCeEEEEECCCCceeeeeeecC----CC--CCceEEEE---cCCCCEEEEEec------
Q 040533 46 YYSNMMDWGR--NNILAIA-LGLELYLWKQENGEVQKLLKVTG----ED--DFPTSISW---SQDAKTLAVGYM------ 107 (364)
Q Consensus 46 ~~~~~~~~~~--~~~~~~~-~~~~i~iw~~~~~~~~~~~~~~~----~~--~~v~~~~~---s~~~~~l~~~~~------ 107 (364)
.|.-+..|++ +.++.++ ..+.|..|+..++....+ .+.+ .. ..+..+.| .|+++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3566788876 3355555 589999999986655444 3332 11 13579999 688777775432
Q ss_pred -------CCcEEEEecC---Ccceeeeee--c-----------CCCcEEEEEeecCCCCEEEEeeCC-CcEEEEEcccCc
Q 040533 108 -------ASKLQLWDAE---TSKLIRNLE--G-----------HDKRVATASWNHWNGHILTSGSQD-KSIINHDVRVSN 163 (364)
Q Consensus 108 -------dg~i~iw~~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~ 163 (364)
+..|..||+. +++.+.... . -......++..+ +|+..++++.. +.|...+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~- 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK- 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC-
Confidence 5779999998 777665443 1 112478999999 99999988888 88777776533
Q ss_pred ceeeeeec-----ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 164 NVTSRINA-----HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 164 ~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
........ .....+.|+++|+++.|++....|.+..+|++.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 21211111 112356899999999888887799999999874
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0015 Score=54.95 Aligned_cols=184 Identities=8% Similarity=0.014 Sum_probs=110.9
Q ss_pred CceEEEEcCCCCEEEEE------------ecCCcEEEEecCCc--ceee-eeec-----CCCcEEEEEeecC-CCC--EE
Q 040533 89 FPTSISWSQDAKTLAVG------------YMASKLQLWDAETS--KLIR-NLEG-----HDKRVATASWNHW-NGH--IL 145 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~------------~~dg~i~iw~~~~~--~~~~-~~~~-----~~~~v~~~~~~~~-~~~--~l 145 (364)
...+++..|+|..++++ ..+|.|.++|.++. +... .+.+ ..-....+.+.++ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45577778877544443 16899999998742 2211 1222 1235677777652 232 44
Q ss_pred EEeeC--CCcEEEEEcccCcceee---eeec-ccCcEEEEEEcCCCCEEEEEe-----------------CCCeEEEEeC
Q 040533 146 TSGSQ--DKSIINHDVRVSNNVTS---RINA-HTAEVCGLKWSNEGNLLASGG-----------------DDNLVHVWDH 202 (364)
Q Consensus 146 ~~~~~--dg~i~~~d~~~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~ 202 (364)
++-.. +.+|.+|++........ .+.+ .-...+.+.+.++|.+.++.. ..|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 46788888776543222 2222 124578999999998776653 1245666663
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeE--EEEEecCCCeEEEEEcC-Ccccee
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTC--IHSVDTKAQICGLEWNR-HHKEIL 278 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~--~~~~~~~~~v~~~~~~~-~~~~l~ 278 (364)
. . +..+...-...+.++|+|+++.++++-+ ..+.|..|++.. ++. .+.+......-.+++.+ +|.+.+
T Consensus 211 ~---~---~~~~~~~l~~pNGia~spDg~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 211 N---D---VRVVAEGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp T---C---CEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred C---e---EEEeecCCcccCcceECCCCCEEEEEeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence 2 1 2333333445688999999988888765 678999999863 332 23444456678889998 588776
Q ss_pred ee
Q 040533 279 SG 280 (364)
Q Consensus 279 ~~ 280 (364)
++
T Consensus 283 a~ 284 (355)
T 3sre_A 283 GC 284 (355)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0025 Score=53.87 Aligned_cols=232 Identities=14% Similarity=0.151 Sum_probs=122.6
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-eeeee---ecCCCcEEEEEeecC---CCCEEEEeeC---C----C
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LIRNL---EGHDKRVATASWNHW---NGHILTSGSQ---D----K 152 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~---d----g 152 (364)
-.....++|.|+|+++++ ..+|.|.+++ .+++ .+..+ .........++++|. ++.+.++-+. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999985554 5679999997 3454 22221 112356889999993 2444444332 3 5
Q ss_pred cEEEEEcccCc------c-eeeeeec-ccCcEEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCCC----
Q 040533 153 SIINHDVRVSN------N-VTSRINA-HTAEVCGLKWSNEGNLLASGGD-------------DNLVHVWDHSKMSS---- 207 (364)
Q Consensus 153 ~i~~~d~~~~~------~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~~---- 207 (364)
.|..++..... . +...+.. .......++|.|+|.+.++.+. .|.|.-++....-.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 67777765431 1 1111211 1123467999999987666442 24565555432100
Q ss_pred --CcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCC--------C--------eEEEEE-ecCCCeE
Q 040533 208 --SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQK--------G--------TCIHSV-DTKAQIC 266 (364)
Q Consensus 208 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~--------~--------~~~~~~-~~~~~v~ 266 (364)
...+.. .++. ....++|+|+...++++-.+ .+. .|.+..... + .++..+ ..+....
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 001111 1222 34689999944466665432 221 233332110 0 122222 2234567
Q ss_pred EEEEc-------CCccceeeeccCCccCCCCeEEEeeCCCC-cee--eec-cccccceeEEeecCCCCEEEEEe
Q 040533 267 GLEWN-------RHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKW--GEL-QHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 267 ~~~~~-------~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~--~~~-~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
.+++. .+|.++++... .+.|...++... +.. ..+ ......+..+++.|||.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLR------GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETT------TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcC------CCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 77773 45555554432 677888777643 221 122 22235688999999997666654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00057 Score=56.27 Aligned_cols=165 Identities=12% Similarity=0.191 Sum_probs=107.7
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeee-eec----CC--CcEEEEEe---ecCCCCEEEEee
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRN-LEG----HD--KRVATASW---NHWNGHILTSGS 149 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~~l~~~~ 149 (364)
+.+........+++|.+....|..++ ..|+|..|+...+..... +.. .. ..+..+.| .| ++.++++..
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~ 84 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMK 84 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEc
Confidence 34445566677899988666666666 789999999876543332 221 11 14678999 58 677777544
Q ss_pred C-------------CCcEEEEEcc---cCcceee-eeecc-----------cCcEEEEEEcCCCCEEEEEeCC-CeEEEE
Q 040533 150 Q-------------DKSIINHDVR---VSNNVTS-RINAH-----------TAEVCGLKWSNEGNLLASGGDD-NLVHVW 200 (364)
Q Consensus 150 ~-------------dg~i~~~d~~---~~~~~~~-~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d-~~i~iw 200 (364)
. +..|..||+. +++.... .+... ......++..++|+..++++.. +.|...
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 2 5779999998 5553222 11111 1247899999999999988887 887777
Q ss_pred eCCCCCCCcceEEec------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 201 DHSKMSSSKCLHRFR------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 201 d~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
+.... .+..+. ......+.|+++|++..|++.. ..+.+..+|+.+.
T Consensus 165 ~pdG~----~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~---~~g~L~~fD~~~p 216 (334)
T 2p9w_A 165 SADGK----TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG---GPRALTAFDVSKP 216 (334)
T ss_dssp CTTSC----CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES---SSSSEEEEECSSS
T ss_pred eCCCC----EEeeeeecCCCcccccCcceEEEeCCCCEEEEEc---CCCeEEEEcCCCC
Confidence 65422 122211 1122366899999996666654 3899999998853
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0024 Score=53.99 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=116.2
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc-eeeee---ecccCcEEEEEEcCC---CCEEEEEeCC------Ce
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN-VTSRI---NAHTAEVCGLKWSNE---GNLLASGGDD------NL 196 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~d------~~ 196 (364)
.....++|.| +++++++ ..+|.|.+++ .+.. .+..+ .........++|+|+ +..|+++... +.
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 4567899999 8885554 5669999988 2321 11111 112356889999998 5555554432 56
Q ss_pred EEEEeCCCCCC--Ccce-EEec---ccccceeEEEEccCCCcEEEeec-C----------CCCCeEEEEECCCC------
Q 040533 197 VHVWDHSKMSS--SKCL-HRFR---DHRAAVKALAWCPYQFNVLASGG-G----------TQDGCIKIWNVQKG------ 253 (364)
Q Consensus 197 i~iwd~~~~~~--~~~~-~~~~---~~~~~v~~~~~~~~~~~~~~~~~-g----------~~d~~i~i~d~~~~------ 253 (364)
|..++...... .+.+ ..+. ........++|.|+| .++++.+ + +..|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 77887653211 1111 1122 111234689999999 5655532 0 01256666665430
Q ss_pred --------eEEEEEecCCCeEEEEEcC-CccceeeeccCCccCCCC-------eEEEeeCCC----------------Cc
Q 040533 254 --------TCIHSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQ-------KLCLWKYPH----------------MT 301 (364)
Q Consensus 254 --------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~-------~i~i~d~~~----------------~~ 301 (364)
..+.. ........++|+| ++.+.++-.+ .+. .|.+..... ..
T Consensus 186 f~~~~~~~~~i~a-~G~rnp~g~a~d~~~g~l~v~d~g-----~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 186 FLGRRGARPEVYS-LGHRNPQGLAWHPKTGELFSSEHG-----PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp TTTCTTSCTTEEE-ECCSEECCCEECTTTCCEEEEEEC-----C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred ccCCCCCCccEEE-EcCCCcccEEEECCCCCEEEEEcC-----CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 11111 1223467889999 5554443321 122 243332111 01
Q ss_pred eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC------CcceeccCCceeeeeeccC
Q 040533 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG------SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 302 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~------~~~~~~~~~~v~~~~~sp~ 363 (364)
++..+..| .....++| .+|.++++.-..+.|...++..... ...+......+.++++.|.
T Consensus 260 p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 325 (352)
T 2ism_A 260 PLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPD 325 (352)
T ss_dssp CSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTT
T ss_pred CeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCC
Confidence 22233222 23567777 4676666666677788888775442 1222222356788888774
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0036 Score=52.95 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=123.1
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee---e----ecCCCcEEEEEeecC---CCCEEEEeeC-------C
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN---L----EGHDKRVATASWNHW---NGHILTSGSQ-------D 151 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~~l~~~~~-------d 151 (364)
....|+|.|+|+.|+++...|.|++++.. +..... + .........++++|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46899999999834445568999999853 332111 1 112345789999983 3444444332 2
Q ss_pred CcEEEEEcccCc----ceeeeeec------ccCcEEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCC--
Q 040533 152 KSIINHDVRVSN----NVTSRINA------HTAEVCGLKWSNEGNLLASGGD-------------DNLVHVWDHSKMS-- 206 (364)
Q Consensus 152 g~i~~~d~~~~~----~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~-- 206 (364)
..|..+++.... .....+.. .......++|.|+|.+.++.+. .|.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 356666664321 11111111 1112357999999965555433 2467666654210
Q ss_pred ---------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC------------------------
Q 040533 207 ---------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG------------------------ 253 (364)
Q Consensus 207 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------------------------ 253 (364)
....+.. .++ .....++|+|....++++-.+ .++.=.|.-+..+
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 0011111 122 235789999943366665321 2221122222111
Q ss_pred -------eEEEEEecCCCeEEEEEcC-------CccceeeeccCCccCCCCeEEEeeCCCCceeee---ccccccceeEE
Q 040533 254 -------TCIHSVDTKAQICGLEWNR-------HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE---LQHQTSRILEL 316 (364)
Q Consensus 254 -------~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~---~~~~~~~i~~i 316 (364)
.++..+..+.....+.+.. +|.++++... .+.|...++..++.... +......+..+
T Consensus 255 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v 328 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALK------DKDVIVMSVNGDKVTEDGRILTDRGQRIRDV 328 (353)
T ss_dssp SSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETT------TTEEEEEEEETTEEEEEEEESGGGCCCEEEE
T ss_pred CCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEcc------CCEEEEEEeCCCeEeeeEEcccCCCCceeEE
Confidence 1122233334566677754 3555554432 67777777765443322 22223468899
Q ss_pred eecCCCCEEEEEe-CCCcEEEEEe
Q 040533 317 SQSPDGLTVVSAA-ADETLRFWEA 339 (364)
Q Consensus 317 ~~~~~~~~l~~~~-~dg~i~vw~~ 339 (364)
++.|||.++++.. .+| +||.+
T Consensus 329 ~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 329 RTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EECTTSCEEEEECSTTE--EEEEE
T ss_pred EECCCCcEEEEEeCCCC--EEEEE
Confidence 9999998666433 344 45554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.03 E-value=0.013 Score=57.49 Aligned_cols=289 Identities=8% Similarity=0.039 Sum_probs=156.6
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC------CCEEEEEec-CCcEEEEecCCcceeeeeec-CC
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD------AKTLAVGYM-ASKLQLWDAETSKLIRNLEG-HD 129 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~-~~ 129 (364)
.++.+.++.+.++++..++....... .-...|.|+++.|. ++++|+|.. |++|+|+++.+.+.+....- ..
T Consensus 525 ~vvva~g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~ 603 (1158)
T 3ei3_A 525 QVVVAVGRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE 603 (1158)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEEECCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC
Confidence 34344577888888776654433332 23567999999863 369999996 99999999987665543221 11
Q ss_pred CcEEEEEeecC-CCCEEEEeeCCCcEEEEEccc--Ccce--eeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCC
Q 040533 130 KRVATASWNHW-NGHILTSGSQDKSIINHDVRV--SNNV--TSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVHVWDHS 203 (364)
Q Consensus 130 ~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 203 (364)
....++.+... ...+|..|-.||.+..+.++. +... .....+ ..++.-..+...+. .+++.+ +....++.-+
T Consensus 604 ~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~ 681 (1158)
T 3ei3_A 604 IIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN 681 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS
T ss_pred CCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC
Confidence 23444444321 345788999999887666543 2211 111222 23444444443333 233333 4444444322
Q ss_pred CCCCCcceEEeccccccee-EEEEccCC--CcEEEeecCCCCCeEEEEECCC--CeEEEEEecCCCeEEEEEcCCcccee
Q 040533 204 KMSSSKCLHRFRDHRAAVK-ALAWCPYQ--FNVLASGGGTQDGCIKIWNVQK--GTCIHSVDTKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~-~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 278 (364)
. +.... .-....+. ...|+... ..++++ .++.++|..+.+ .-.++++.....+..++++|..+.++
T Consensus 682 ~----~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~ 752 (1158)
T 3ei3_A 682 H----KLVFS-NVNLKEVNYMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFG 752 (1158)
T ss_dssp S----SEEEE-EBSSSCCCEEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEE
T ss_pred C----ceEEe-ccChHHhceEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEE
Confidence 1 11111 11112232 23343221 124333 356688887754 33456667777888888888777655
Q ss_pred eeccCC----c-c--------------------------------------CCCCeEEEeeCCCCceeeecccc-cccee
Q 040533 279 SGHGFS----S-S--------------------------------------GDGQKLCLWKYPHMTKWGELQHQ-TSRIL 314 (364)
Q Consensus 279 ~~~~~~----~-~--------------------------------------~~~~~i~i~d~~~~~~~~~~~~~-~~~i~ 314 (364)
.+..-. . + ...+.|++.|..+.+.+..++-. ...+.
T Consensus 753 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~ 832 (1158)
T 3ei3_A 753 VLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYAL 832 (1158)
T ss_dssp EEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEE
T ss_pred EEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceE
Confidence 432100 0 0 01246888888888876655422 22344
Q ss_pred EE---eecCC-CCEEEEEe----------CCCcEEEEEeeCCCCCccee--ccCCceeeee
Q 040533 315 EL---SQSPD-GLTVVSAA----------ADETLRFWEAFGPSGSGDFV--SHLDGLLSLK 359 (364)
Q Consensus 315 ~i---~~~~~-~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~ 359 (364)
++ .|..+ ..+|++|+ ..|.|.+|++..++ +..+. ...++|++++
T Consensus 833 sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~~v~g~v~al~ 892 (1158)
T 3ei3_A 833 SLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEKEVKGAVYSMV 892 (1158)
T ss_dssp EEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEEEESSCEEEEE
T ss_pred EEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEEEcCCcCEEEe
Confidence 44 44333 46888886 34889999998432 22221 2356677664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0015 Score=53.83 Aligned_cols=232 Identities=13% Similarity=0.103 Sum_probs=112.7
Q ss_pred CCCEEEEEe-cC-----CcEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeCC-----CcEEEEEcccCc-
Q 040533 98 DAKTLAVGY-MA-----SKLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQD-----KSIINHDVRVSN- 163 (364)
Q Consensus 98 ~~~~l~~~~-~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~- 163 (364)
++.+++.|+ .+ ..+.+||..+.+.... +.........+.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445666666 33 3688999887653322 2211112222222 67788888765 368899987665
Q ss_pred --ce-eeeeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 164 --NV-TSRINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 164 --~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
-. ...+.........+.+ ++++++.|+.+ ..+.+||+.+..- ..+..+.........+.+ ++ .+++
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv 164 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW-SMLGDMQTAREGAGLVVA--SG-VIYC 164 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE-EEEEECSSCCBSCEEEEE--TT-EEEE
T ss_pred CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE-EECCCCCCCcccceEEEE--CC-EEEE
Confidence 21 1111111111122222 56677777643 3688899765432 222222211111122222 33 6777
Q ss_pred eecCC---CCCeEEEEECCCCeEEEEEecCCC--eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeeccc
Q 040533 236 SGGGT---QDGCIKIWNVQKGTCIHSVDTKAQ--ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQH 308 (364)
Q Consensus 236 ~~~g~---~d~~i~i~d~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~ 308 (364)
.|+.. .-..+.+||+.+.+-...-....+ -.++... +++.++.|.. ........+.+||+.+.+- +..+..
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGF-DGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB-CSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCC-CCCcccceEEEEeCCCCcEEECCCCCC
Confidence 76511 125689999988754433211111 1122222 4455555432 1111145789999876542 222221
Q ss_pred cccceeEEeecCCCCEEEEEeCCC-----cEEEEEeeCC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADE-----TLRFWEAFGP 342 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg-----~i~vw~~~~~ 342 (364)
.......+.+ ++++++.|+.++ .+.+||+.+.
T Consensus 243 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 243 PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 1111122222 677777777653 4677776654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0012 Score=56.07 Aligned_cols=144 Identities=10% Similarity=0.077 Sum_probs=99.2
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecC--CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc------------e
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTG--EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK------------L 121 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------------~ 121 (364)
+.-+..+.++.|+.-++......+.+..+. .-..|..+..||+|++||..+ +..|.|-.+..+. .
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 445666678999999988555555666543 233688999999999999986 5689999887331 1
Q ss_pred eeeeec------CCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcceeeeee---------cccCcEEEEEEcCC
Q 040533 122 IRNLEG------HDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNNVTSRIN---------AHTAEVCGLKWSNE 184 (364)
Q Consensus 122 ~~~~~~------~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~ 184 (364)
.+.+.- ...+|..+.|+|.. +..|++-..|+.|++||+.........+. .....|.+++|.++
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~ 190 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKD 190 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCC
Confidence 112221 24679999999942 45899999999999999985321111111 12257889999998
Q ss_pred CCEEEEEe--CCCeEEEE
Q 040533 185 GNLLASGG--DDNLVHVW 200 (364)
Q Consensus 185 ~~~l~~~~--~d~~i~iw 200 (364)
+-.|...+ +.|.|+-.
T Consensus 191 ~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 191 GLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SSCEEEEECTTSCEEEEE
T ss_pred CcEEEEEecCCCCCEEEE
Confidence 76666644 77888754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0034 Score=61.50 Aligned_cols=276 Identities=8% Similarity=0.057 Sum_probs=165.9
Q ss_pred cccCCCccEEEEEe----CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 50 MMDWGRNNILAIAL----GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 50 ~~~~~~~~~~~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
.+.+.++..+++-. +..|.|.|+..+......... --+.-.+|..+.+|.=. ..++.|||+++...++.+
T Consensus 29 ~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~ 102 (1630)
T 1xi4_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH 102 (1630)
T ss_pred ceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc-----chhhccCCCcceEEEec-CCeEEEeehHHhhhhccc
Confidence 34444466666543 247888888876543222121 12345688888777664 678999999998888776
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc----cCcEEEEEEcCCCCEEEEEe-------CC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH----TAEVCGLKWSNEGNLLASGG-------DD 194 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d 194 (364)
.- ..+|.-=.|- +.+.|+..+ +..|..|++.....+...+..| ...|.....+++.++++..| -.
T Consensus 103 ~~-~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~ 178 (1630)
T 1xi4_A 103 TM-TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 178 (1630)
T ss_pred cc-CCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccc
Confidence 63 4566666665 455555554 3479999997655555555544 45677778888888877554 34
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEc--cCCCcEEEeecC-CCCCeEEEEECCCC---eEEE---E--E--ec
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC--PYQFNVLASGGG-TQDGCIKIWNVQKG---TCIH---S--V--DT 261 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g-~~d~~i~i~d~~~~---~~~~---~--~--~~ 261 (364)
|.+.+|..+... .+.+.+|.+....+... +....+++.+.. ...+.++|.++... .+.. . + ..
T Consensus 179 G~mQLyS~er~~----sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~ 254 (1630)
T 1xi4_A 179 GAMQLYSVDRKV----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (1630)
T ss_pred ceeeeeeccccc----chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc
Confidence 788899876532 44556666554444432 222234443320 12368888888542 1110 0 0 11
Q ss_pred ---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 262 ---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 262 ---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
..-..++..++....++.-+. -|.+.+||+.++.++..-+-...+|...+-+....=++.....|.|.--.
T Consensus 255 ~~~~Dfpv~~~vs~k~g~iy~itk------~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 255 EAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (1630)
T ss_pred ccccCcceEEEeccccCEEEEEec------CceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEE
Confidence 112345666666665555433 89999999999998877665566666555544333344455677766666
Q ss_pred eeCCCCC
Q 040533 339 AFGPSGS 345 (364)
Q Consensus 339 ~~~~~~~ 345 (364)
+.....+
T Consensus 329 v~~~~iv 335 (1630)
T 1xi4_A 329 VEEENII 335 (1630)
T ss_pred Eccchhh
Confidence 6554443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0066 Score=51.02 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=96.3
Q ss_pred eCCeEEEEECCC--CceeeeeeecC-----CCCCceEEEEcC--CCC-EEEEE-ec--CCcEEEEecCCcc----eeeee
Q 040533 63 LGLELYLWKQEN--GEVQKLLKVTG-----EDDFPTSISWSQ--DAK-TLAVG-YM--ASKLQLWDAETSK----LIRNL 125 (364)
Q Consensus 63 ~~~~i~iw~~~~--~~~~~~~~~~~-----~~~~v~~~~~s~--~~~-~l~~~-~~--dg~i~iw~~~~~~----~~~~~ 125 (364)
.+|.|.++|.++ .+... +.+.+ ..-....+.+.+ ++. +|+++ .. +..|.+|+++... .+..+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~-l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSE-LEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEE-CEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEE-EEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 578999999874 33332 23333 224667788765 454 44444 22 4678888876532 22233
Q ss_pred ecC-CCcEEEEEeecCCCCEEEEee-----------------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE
Q 040533 126 EGH-DKRVATASWNHWNGHILTSGS-----------------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 126 ~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (364)
.+. -...+.+.+.+ ++.+.++.. ..|.|..+|. ++ .......-...+.++|+||++.
T Consensus 160 ~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--~~~~~~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 160 RHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--VRVVAEGFDFANGINISPDGKY 234 (355)
T ss_dssp CCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--CEEEEEEESSEEEEEECTTSSE
T ss_pred ccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce--EEEeecCCcccCcceECCCCCE
Confidence 322 24578899998 888777654 1244555554 32 2222233355789999999987
Q ss_pred EEEEe-CCCeEEEEeCCCCCCCcceEEecccccceeEEEEcc-CCCcEEE
Q 040533 188 LASGG-DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLA 235 (364)
Q Consensus 188 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~ 235 (364)
|+.+. ..+.|..|++...........+ ...+..-.+++.+ +|. +.+
T Consensus 235 lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwv 282 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWV 282 (355)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEE
T ss_pred EEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEE
Confidence 77665 5678999998643221222233 2245567788888 474 444
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0038 Score=51.59 Aligned_cols=224 Identities=11% Similarity=0.095 Sum_probs=112.1
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC----CcEEEEecCCcceeee--eecCCCcEEEEEe
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA----SKLQLWDAETSKLIRN--LEGHDKRVATASW 137 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~ 137 (364)
...+.+||..+++...+..++.....-..+.+ ++.+++.|+.+ ..+.+||..+++.... +.........+.+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence 35899999999887665544332222223332 56677777754 5688999887754332 2211112222233
Q ss_pred ecCCCCEEEEeeCC------CcEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEEEEeC---------CCeEEEEe
Q 040533 138 NHWNGHILTSGSQD------KSIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGD---------DNLVHVWD 201 (364)
Q Consensus 138 ~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd 201 (364)
++.+++.|+.+ ..+.+||+.+..-... .+......-..+. -++++++.|+. -..+.+||
T Consensus 101 ---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd 175 (306)
T 3ii7_A 101 ---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYD 175 (306)
T ss_dssp ---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred ---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeC
Confidence 77788888765 4588899876542111 1111111111222 25666666653 34588899
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccc
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKE 276 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 276 (364)
+.+..- ..+..+...... .+++.. ++ .+++.|+... -..+.+||+.+.+-...-.... .-.++... +++.
T Consensus 176 ~~~~~W-~~~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i 250 (306)
T 3ii7_A 176 PATETW-TELCPMIEARKN-HGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIV 250 (306)
T ss_dssp TTTTEE-EEECCCSSCCBS-CEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEE
T ss_pred CCCCeE-EECCCccchhhc-ceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEE
Confidence 776422 112111111111 122222 33 6777765111 2468999998865433211111 11122222 4555
Q ss_pred eeeeccCCccCCCCeEEEeeCCCC
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
++.|.. .....-..+.+||..+.
T Consensus 251 ~v~GG~-~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 251 YVLAGF-QGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECB-CSSSBCCEEEEEETTTT
T ss_pred EEEeCc-CCCeeeeeEEEEcCCCC
Confidence 555432 11122457888888664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0051 Score=50.62 Aligned_cols=223 Identities=12% Similarity=0.077 Sum_probs=110.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-----CcEEEEecCCcc---eee--eeecCCCcEEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSK---LIR--NLEGHDKRVAT 134 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~---~~~--~~~~~~~~v~~ 134 (364)
..+.+||..+++...+..++.....-..+. .++.+++.|+.+ ..+.+||..+.+ ... .+.........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 478999999887765544433222222222 356777777754 368999988765 322 22211122222
Q ss_pred EEeecCCCCEEEEeeCCC-----cEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCC
Q 040533 135 ASWNHWNGHILTSGSQDK-----SIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDHS 203 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~ 203 (364)
+.. ++.+++.|+.++ .+.+||+.+..-.. ..+......-..+.+ ++++++.|+.+ ..+.+||+.
T Consensus 109 ~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~ 183 (301)
T 2vpj_A 109 TTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPH 183 (301)
T ss_dssp EEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred EEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCC
Confidence 223 677888887543 57888887654211 111111111122222 56677777654 458889976
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCcccee
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEIL 278 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~ 278 (364)
+..- ..+..+.........+.+ + ..+++.|+... ...+.+||+.+.+-...-.... .-.++... +++.++
T Consensus 184 ~~~W-~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v 258 (301)
T 2vpj_A 184 TGHW-TNVTPMATKRSGAGVALL--N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYA 258 (301)
T ss_dssp TTEE-EEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEE
T ss_pred CCcE-EeCCCCCcccccceEEEE--C-CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEE
Confidence 5432 112111111111122222 2 36777775111 2568999998876443322111 11122222 455544
Q ss_pred eeccCCccCCCCeEEEeeCCCC
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
.|.. .....-..+.+||..+.
T Consensus 259 ~GG~-~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 259 IAGY-DGNSLLSSIECYDPIID 279 (301)
T ss_dssp ECCB-CSSSBEEEEEEEETTTT
T ss_pred EcCc-CCCcccccEEEEcCCCC
Confidence 4431 11111156778887654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0036 Score=51.63 Aligned_cols=231 Identities=12% Similarity=0.118 Sum_probs=109.1
Q ss_pred CCEEEEEecC----CcEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeCCC-----cEEEEEcccCccee-
Q 040533 99 AKTLAVGYMA----SKLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQDK-----SIINHDVRVSNNVT- 166 (364)
Q Consensus 99 ~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~- 166 (364)
+.+++.|+.+ ..+..||+.+.+.... +......-..+.. ++.+++.|+.++ .+.+||+.+..-..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3455555543 3578888877653322 1111111122222 677888887553 58888887654211
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDDN-----LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
..+.........+.+ ++++++.|+.++ .+.+||+.+..- ..+..+....... +++.. ++ .+++.|+...
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~ 166 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW-FHVAPMNTRRSSV-GVGVV-GG-LLYAVGGYDV 166 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE-EEECCCSSCCBSC-EEEEE-TT-EEEEECCEET
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE-eecCCCCCcccCc-eEEEE-CC-EEEEEeCCCC
Confidence 111111111122222 566777777553 577888765422 1121111111111 22222 33 6777764111
Q ss_pred -----CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeeccccccc
Q 040533 242 -----DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQHQTSR 312 (364)
Q Consensus 242 -----d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~ 312 (364)
-..+.+||+.+.+-...-.... .-.++... +++.++.|.. ......+.+.+||..+.+- +..+......
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 244 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGH-DGPLVRKSVEVYDPTTNAWRQVADMNMCRRN 244 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB-SSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCC-CCCcccceEEEEeCCCCCEeeCCCCCCcccc
Confidence 2458899998875443321111 11222222 4555555432 1111135789999876432 2222211111
Q ss_pred eeEEeecCCCCEEEEEeCCC-----cEEEEEeeCC
Q 040533 313 ILELSQSPDGLTVVSAAADE-----TLRFWEAFGP 342 (364)
Q Consensus 313 i~~i~~~~~~~~l~~~~~dg-----~i~vw~~~~~ 342 (364)
...+.+ ++++++.|+.++ .+.+||+.+.
T Consensus 245 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 245 AGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 122222 677778887654 4788887654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0066 Score=49.98 Aligned_cols=223 Identities=12% Similarity=0.132 Sum_probs=108.0
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-----cEEEEecCCcceeee--eecCCCcEEEEEe
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-----KLQLWDAETSKLIRN--LEGHDKRVATASW 137 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~--~~~~~~~v~~~~~ 137 (364)
..+..||+.+.+...+..++.....-..+.+ ++.+++.|+.++ .+.+||..+.+.... +.........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 4688999988876655443322222222222 667777777543 588999887653322 2211122222333
Q ss_pred ecCCCCEEEEeeCCC-----cEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEEEEeCC-------CeEEEEeCCC
Q 040533 138 NHWNGHILTSGSQDK-----SIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGDD-------NLVHVWDHSK 204 (364)
Q Consensus 138 ~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~ 204 (364)
++.+++.|+.++ .+.+||+.+..-... .+.........+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 108 ---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 108 ---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp ---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred ---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 677888887654 467788775542111 11111111122222 56666666542 3588899765
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceee
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILS 279 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~ 279 (364)
..- ..+..+.........+.+ + ..+++.|+... ...+.+||+.+.+-...-.... .-.++.. -+++.++.
T Consensus 183 ~~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~ 257 (302)
T 2xn4_A 183 NEW-TYIAEMSTRRSGAGVGVL--N-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVV 257 (302)
T ss_dssp TEE-EEECCCSSCCBSCEEEEE--T-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEE
T ss_pred CcE-EECCCCccccccccEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEE
Confidence 422 111111111111122222 2 36777775111 2468999998875443221111 1112222 24455544
Q ss_pred eccCCccCCCCeEEEeeCCCC
Q 040533 280 GHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~ 300 (364)
|.. .....-..+.+||..+.
T Consensus 258 GG~-~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 258 GGD-DGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CCB-CSSSBCCCEEEEETTTT
T ss_pred CCc-CCCcccccEEEEcCCCC
Confidence 432 11112345788887654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0052 Score=50.82 Aligned_cols=223 Identities=14% Similarity=0.091 Sum_probs=109.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----C-----CcEEEEecCCcceeee--eecCCCcEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----A-----SKLQLWDAETSKLIRN--LEGHDKRVA 133 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~iw~~~~~~~~~~--~~~~~~~v~ 133 (364)
..+.+||..+++...+..++.....- +++.. ++.+++.|+. + ..+.+||..+.+.... +........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 47899999988876554433222222 22222 5677777765 2 3588999887653322 221112222
Q ss_pred EEEeecCCCCEEEEeeCC-----CcEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeC
Q 040533 134 TASWNHWNGHILTSGSQD-----KSIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDH 202 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~ 202 (364)
.+.+ ++.+++.|+.+ ..+.+||+.+..-... .+......-..+.+ ++++++.|+.+ ..+.+||+
T Consensus 117 ~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 117 VGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp EEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred EEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeC
Confidence 3333 67788887754 3578888876542111 11111111122222 56677777654 45888997
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccce
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEI 277 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l 277 (364)
.+..- ..+..+.........+.+ + ..+++.|+... -..+.+||+.+.+-...-.... .-.++... +++.+
T Consensus 192 ~~~~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~ 266 (308)
T 1zgk_A 192 ERNEW-RMITAMNTIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIY 266 (308)
T ss_dssp TTTEE-EECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEE
T ss_pred CCCeE-eeCCCCCCccccceEEEE--C-CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEE
Confidence 65422 111111111111222222 3 36777775111 2568999998875433211111 11122222 44444
Q ss_pred eeeccCCccCCCCeEEEeeCCCC
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
+.|.. .....-..+.+||+.+.
T Consensus 267 v~GG~-~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 267 VLGGY-DGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EECCB-CSSCBCCEEEEEETTTT
T ss_pred EEcCc-CCCcccceEEEEcCCCC
Confidence 44431 11112356777777654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.018 Score=48.63 Aligned_cols=227 Identities=12% Similarity=0.048 Sum_probs=117.0
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee---ecccCcEEEEEEcCC---CCEEEEEeC----C----
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGLKWSNE---GNLLASGGD----D---- 194 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d---- 194 (364)
-.....++|.| ++++++ +..+|.|++++.. +...+..+ .........|+++|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~p-dG~l~V-~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLG-GGRYLV-TERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEE-TTEEEE-EETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcC-CCeEEE-EeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34568899999 887554 5566999988732 32112111 112356889999997 445555443 2
Q ss_pred CeEEEEeCCCCC--C--Ccce-EEec-ccccceeEEEEccCCCcEEEeecC-----------CCCCeEEEEECCCC----
Q 040533 195 NLVHVWDHSKMS--S--SKCL-HRFR-DHRAAVKALAWCPYQFNVLASGGG-----------TQDGCIKIWNVQKG---- 253 (364)
Q Consensus 195 ~~i~iwd~~~~~--~--~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~g-----------~~d~~i~i~d~~~~---- 253 (364)
..|..|+..... . .+.+ ..+. ........++|.|+|. ++++.+. +..|.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 567777765321 0 1111 1121 1112346799999995 5555320 01245666665421
Q ss_pred -----eEEEEEecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCC----------------Cceeeecccccc
Q 040533 254 -----TCIHSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPH----------------MTKWGELQHQTS 311 (364)
Q Consensus 254 -----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~----------------~~~~~~~~~~~~ 311 (364)
..+... .......++|+| ++.+.++-.. . .....|.+..... ..++..+.....
T Consensus 184 npf~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~g-~--~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 184 NPFPNSPIWSY-GHRNPQGIDWHRASGVMVATEHG-P--VGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp SSSTTCCEEEE-CCSCCCEEEECTTTCCEEEEECC-S--SSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCCCcEEEE-ccCCcceEEEeCCCCCEEEEecC-C--CCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 112221 223457899999 5554444321 0 0011233322100 012223311223
Q ss_pred ceeEEeec-------CCCCEEEEEeCCCcEEEEEeeCCCCC---ccee-ccCCceeeeeeccC
Q 040533 312 RILELSQS-------PDGLTVVSAAADETLRFWEAFGPSGS---GDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 312 ~i~~i~~~-------~~~~~l~~~~~dg~i~vw~~~~~~~~---~~~~-~~~~~v~~~~~sp~ 363 (364)
....++|. .+|.++++.-..+.|...++...... ..+. +....+.++++.|.
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD 322 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD 322 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC
Confidence 46778873 46777777666778888888753211 1221 22346778887764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0062 Score=50.25 Aligned_cols=230 Identities=11% Similarity=0.084 Sum_probs=112.1
Q ss_pred CEEEEEec--CCcEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeCC----CcEEEEEcccCcceee-eee
Q 040533 100 KTLAVGYM--ASKLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQD----KSIINHDVRVSNNVTS-RIN 170 (364)
Q Consensus 100 ~~l~~~~~--dg~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~-~~~ 170 (364)
.+++.|+. ...+.+||..+++.... +.........+.+ ++.+++.|+.+ ..+.+||+.+..-... .+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 35556654 35689999887654322 2211122222333 77788888765 5688889876542111 111
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---
Q 040533 171 AHTAEVCGLKWSNEGNLLASGGDD------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ--- 241 (364)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--- 241 (364)
........+.+ ++++++.|+.+ ..+.+||..+..- ..+..+.........+.+ ++ .+++.|+...
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW-HTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNV 163 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTT
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce-EeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCC
Confidence 11111122222 56677777754 4588899775432 111111111111112222 33 6777664111
Q ss_pred ----CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc--eeeeccccccce
Q 040533 242 ----DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT--KWGELQHQTSRI 313 (364)
Q Consensus 242 ----d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i 313 (364)
-..+.+||+.+.+-...-.... .-.++... +++.++.|.. .....-..+.+||+.+.+ .+..+.......
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQ-NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCE-ETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCC-CCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 3558899998875433322111 11222222 4555554431 101113568899987643 222222222222
Q ss_pred eEEeecCCCCEEEEEeCC-----CcEEEEEeeCC
Q 040533 314 LELSQSPDGLTVVSAAAD-----ETLRFWEAFGP 342 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 342 (364)
..+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 23333 67788888754 45777887664
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.023 Score=48.47 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=93.2
Q ss_pred EcCCCCEEEEEecCCcEEEEecCCcceeeeeecC----CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-----
Q 040533 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH----DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV----- 165 (364)
Q Consensus 95 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----- 165 (364)
...+|..++.+- ++.||.-++......+.+... -..+..+..+| +|++||..+.. .|.|-.+..+...
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDN-EIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECSS-EEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecCC-eEEEEEecCccccCcccc
Confidence 345666676663 577888887754444444432 22578899999 99999988654 7888777632200
Q ss_pred ------eeeeec------ccCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc---------cccce
Q 040533 166 ------TSRINA------HTAEVCGLKWSN---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD---------HRAAV 221 (364)
Q Consensus 166 ------~~~~~~------~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~v 221 (364)
...+.- ...+|..+.|+| .+..|++-..|+.|++||+..... ++. .+.. ....|
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCE-EESCCCSEEESCSSCCCE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCc-chhccccccCCCcccceE
Confidence 111211 246799999999 456899999999999999986322 222 2221 12457
Q ss_pred eEEEEccCCCcEEEeecCCCCCeEEEE
Q 040533 222 KALAWCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
.+++|.+++-.+.+.. .++.|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~-~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLN-TTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEE-CTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEe-cCCCCCEEEE
Confidence 7888888664444422 1245666544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.027 Score=47.08 Aligned_cols=233 Identities=14% Similarity=0.129 Sum_probs=120.0
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--ee----ecCCCcEEEEEeecC---CCCEEEEee--CCCcE
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NL----EGHDKRVATASWNHW---NGHILTSGS--QDKSI 154 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~----~~~~~~v~~~~~~~~---~~~~l~~~~--~dg~i 154 (364)
.-.....|+|.|||.++++-...|.|++++..+++... .+ .........|+++|+ ++.+.++-+ .++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 34567899999999977776558999999876554321 11 123556889999983 244444322 34556
Q ss_pred EEEEcccCc----------ceeeeee-cccCcEEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCC-C--
Q 040533 155 INHDVRVSN----------NVTSRIN-AHTAEVCGLKWSNEGNLLASGGD-------------DNLVHVWDHSKMS-S-- 207 (364)
Q Consensus 155 ~~~d~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~-~-- 207 (364)
.-|.+.... .+...+. ........|.|.|+|.+.++.+. .|.|.-.+....- .
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 666654311 1111111 11123456999999987777542 2455444543210 0
Q ss_pred ---CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe------------------EEEEEecC-CCe
Q 040533 208 ---SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT------------------CIHSVDTK-AQI 265 (364)
Q Consensus 208 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------------------~~~~~~~~-~~v 265 (364)
...+.. .++. ....++|+|++ .++++-.| .++.=.|--+..+. ++..+... ...
T Consensus 190 Pf~~~~i~a-~G~R-Np~Gla~dp~G-~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 190 PFPGSPVYS-YGHR-NVQGLAWDDKQ-RLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp SSTTCCEEE-BCCS-BCCEEEECTTC-CEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCeEEe-eCCC-CcceEEECCCC-CEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 011111 2333 34679999976 56555321 33322222222221 11222211 234
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce----eeeccccccceeEEeecCCCCEEEEEe
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK----WGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
..++|.. |..+.... ..+.|....+..... ...+.+....+..++..|||.++++.+
T Consensus 266 ~G~~~~~-g~~~~~~l------~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYAE-GSVWMAGL------RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEET-TEEEEEES------TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEEc-Cceeeccc------cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5555553 33333332 144555555544322 222333446788999999997666543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.011 Score=48.79 Aligned_cols=232 Identities=13% Similarity=0.098 Sum_probs=109.7
Q ss_pred CCCEEEEEecC----CcEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeC----C-----CcEEEEEcccC
Q 040533 98 DAKTLAVGYMA----SKLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQ----D-----KSIINHDVRVS 162 (364)
Q Consensus 98 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~i~~~d~~~~ 162 (364)
++.+++.|+.+ ..+.+||..+.+.... +.........+.. ++.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 55666666632 3588888877654322 1111111122222 6777777776 2 36788888765
Q ss_pred ccee-eeeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 163 NNVT-SRINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 163 ~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
.-.. ..+.........+.+ ++++++.|+.+ ..+.+||..+..- ..+..+.........+.+ + ..+++.
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~ 174 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW-HLVAPMLTRRIGVGVAVL--N-RLLYAV 174 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--T-TEEEEE
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE-eECCCCCccccceEEEEE--C-CEEEEE
Confidence 4211 111111111122222 56677776643 3588888765422 111111111111122222 3 367777
Q ss_pred ecCCC---CCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee--eecccc
Q 040533 237 GGGTQ---DGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW--GELQHQ 309 (364)
Q Consensus 237 ~~g~~---d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~ 309 (364)
|+... -..+.+||+.+.+-...-... ..-.++... +++.++.|.. .....-..+.+||+.+.+-. ..+...
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGY-DGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB-CSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCC-CCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 65111 246899999876543321111 111222222 4555555432 11112367899998765322 122211
Q ss_pred ccceeEEeecCCCCEEEEEeCC-----CcEEEEEeeCC
Q 040533 310 TSRILELSQSPDGLTVVSAAAD-----ETLRFWEAFGP 342 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 342 (364)
......+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 253 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 253 RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 111122222 66777777754 34677776654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.02 Score=48.39 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=45.4
Q ss_pred CCeEEEEECCC--Cceeeeeeec-CCCCCceEEEEcCCCCEEEEEec-C---------CcEEEEecCCcceeee--ee-c
Q 040533 64 GLELYLWKQEN--GEVQKLLKVT-GEDDFPTSISWSQDAKTLAVGYM-A---------SKLQLWDAETSKLIRN--LE-G 127 (364)
Q Consensus 64 ~~~i~iw~~~~--~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~iw~~~~~~~~~~--~~-~ 127 (364)
...+.+||..+ .+...+..++ .....-.++.+ ++.+++.|+. + ..+.+||..+.+-... +. .
T Consensus 30 ~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~ 107 (357)
T 2uvk_A 30 GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPM 107 (357)
T ss_dssp TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSS
T ss_pred CCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCc
Confidence 45899999874 5555444433 11222222222 5677777765 2 4689999887654332 11 1
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQD 151 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~d 151 (364)
......++. . ++.+++.|+.+
T Consensus 108 ~r~~~~~~~--~-~~~iyv~GG~~ 128 (357)
T 2uvk_A 108 GMAGHVTFV--H-NGKAYVTGGVN 128 (357)
T ss_dssp CCSSEEEEE--E-TTEEEEEECCC
T ss_pred ccccceEEE--E-CCEEEEEeCcC
Confidence 111222233 3 78888888764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.026 Score=46.74 Aligned_cols=183 Identities=12% Similarity=0.097 Sum_probs=93.4
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----C-------CcEEEEecCCcceeee--eecCCCc
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----A-------SKLQLWDAETSKLIRN--LEGHDKR 131 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~iw~~~~~~~~~~--~~~~~~~ 131 (364)
..+.+||..+++... ..++.............++..++.|+. + ..+.+||..+++.... +......
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 789999999988754 333222233334444557788888874 1 1277888887654321 1111111
Q ss_pred EEEEEeecCCCCEEEEeeCC--------CcEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeC-C-----Ce
Q 040533 132 VATASWNHWNGHILTSGSQD--------KSIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGD-D-----NL 196 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~ 196 (364)
...+.+ ++.+++.|+.+ ..+.+||+.+..-.. ..+......-..+. .++++++.|+. + ..
T Consensus 92 ~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 92 FGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp CEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCC
T ss_pred eeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccce
Confidence 122222 67777777743 358889987654111 11111111111222 35667777765 2 46
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEE
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIH 257 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~ 257 (364)
+.+||..+..- ..+..+.........+.+ ++ .+++.|+... -..+.+||+.+.+-..
T Consensus 167 ~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 167 MCVYDPKKFEW-KELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp EEEEETTTTEE-EECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred EEEEeCCCCeE-EECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 88899775422 112111111111122222 33 6777775111 1258899998875443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.023 Score=43.67 Aligned_cols=105 Identities=11% Similarity=0.011 Sum_probs=65.3
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcce------eeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL------IRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+++|+|+|.+.++ .+|.+.-.+..+... -..+-. --....++.|.| ++.+.++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 47889999999986666 678777666544211 111110 011246788988 8888877 56988877764
Q ss_pred cCcce------eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 161 VSNNV------TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 161 ~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+...- ...-..--..+..|.|.|+|.+.++. |+.++-
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 33211 01111112467999999999877666 777543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.084 Score=45.17 Aligned_cols=206 Identities=15% Similarity=0.178 Sum_probs=127.8
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-ceeeeeecC----CC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGH----DK 130 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~----~~ 130 (364)
..++|.-....+.++|+++.+..+...+ ...|.--.|-.+ +.|+..+ +..|+-|+++.. .+.+.+..| ..
T Consensus 77 ~~iiALrag~~lQiFnle~K~klks~~~---~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~ 151 (494)
T 1bpo_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (494)
T ss_dssp SSCEEEEETTEEEEEETTTTEEEEEEEC---SSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred CcEEEEecCCeEEEEchHHhhhhcceec---CCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccc
Confidence 3578887889999999999877666654 345777777644 4566664 568999999743 444555443 35
Q ss_pred cEEEEEeecCCCCEEEEee-------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC---CEEEEEeCC---CeE
Q 040533 131 RVATASWNHWNGHILTSGS-------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG---NLLASGGDD---NLV 197 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d---~~i 197 (364)
.|.....++ +.+.++..+ -.|.+.+|..+.+. ...+.+|...-..+....+. .+++.+... +.+
T Consensus 152 QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 152 QIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp EEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCC--EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred eEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccc--cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 677777788 777665443 23677888876443 56677776655444443211 244444432 789
Q ss_pred EEEeCCCCCCCcc-e----EE-e---cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEE
Q 040533 198 HVWDHSKMSSSKC-L----HR-F---RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICG 267 (364)
Q Consensus 198 ~iwd~~~~~~~~~-~----~~-~---~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~ 267 (364)
++.++.....+.+ . .. + ....+...++..++....+++.. .-|.+++||+.++.++..-.-. ..|..
T Consensus 229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT---K~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe---cCceEEEEecccceeeeeecccCCceEE
Confidence 9999865411111 1 01 1 01234455777777664444433 6899999999999998776543 34444
Q ss_pred EEEcC
Q 040533 268 LEWNR 272 (364)
Q Consensus 268 ~~~~~ 272 (364)
.+.+.
T Consensus 306 t~~~~ 310 (494)
T 1bpo_A 306 TAPHE 310 (494)
T ss_dssp EEEET
T ss_pred ecccC
Confidence 44433
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.069 Score=44.18 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=90.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----CC-------cEEEEecCCcceeee--eecCCCc
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----AS-------KLQLWDAETSKLIRN--LEGHDKR 131 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~iw~~~~~~~~~~--~~~~~~~ 131 (364)
..+..||..+++... .................++..++.|+. ++ .+.+||..+.+.... +......
T Consensus 24 ~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 468999999988755 233222222233334557788888873 12 177888877654322 2111111
Q ss_pred EEEEEeecCCCCEEEEeeCC-------CcEEEEEcccCcceeeeeecccCcE--EEEEEcCCCCEEEEEeC------CCe
Q 040533 132 VATASWNHWNGHILTSGSQD-------KSIINHDVRVSNNVTSRINAHTAEV--CGLKWSNEGNLLASGGD------DNL 196 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~------d~~ 196 (364)
...+.+ ++.+++.|+.+ ..+.+||+.+..- ........+. .+++. .++++++.|+. -..
T Consensus 103 ~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 103 FGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCC
T ss_pred cceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccce
Confidence 222223 67778887754 2477888775542 1111111110 11222 35667777763 235
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEE
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCI 256 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~ 256 (364)
+.+||+.+..- ..+..+....... +++.. ++ .+++.||... -..+.+||+.+.+-.
T Consensus 177 ~~~yd~~~~~W-~~~~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 177 VFIYNPKKGDW-KDLAPMKTPRSMF-GVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEEEETTTTEE-EEECCCSSCCBSC-EEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEEEcCCCCEE-EECCCCCCCcccc-eEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 88999876432 1121111111111 22222 23 6777765111 145778998876543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.072 Score=49.51 Aligned_cols=188 Identities=12% Similarity=0.093 Sum_probs=98.8
Q ss_pred CeEEEEECCCCceeeee-e-----ecCCCCCceEEEEcC-CCCEEEEEecCC------cEEEEecCCcceeee--eecCC
Q 040533 65 LELYLWKQENGEVQKLL-K-----VTGEDDFPTSISWSQ-DAKTLAVGYMAS------KLQLWDAETSKLIRN--LEGHD 129 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~-~-----~~~~~~~v~~~~~s~-~~~~l~~~~~dg------~i~iw~~~~~~~~~~--~~~~~ 129 (364)
..+.+||..+++...+. . .+..... .+++..+ ++.+++.|+.++ .+.+||..+.+.... +....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 46899999988776554 2 1111112 2333333 677888887543 588999887543322 22111
Q ss_pred CcEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcceeee----eecccCcEEEEEEcCC-CCEEEEEeC--C-----C
Q 040533 130 KRVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNVTSR----INAHTAEVCGLKWSNE-GNLLASGGD--D-----N 195 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----~ 195 (364)
..- +++... ++.+++.|+.++ .+.+||+.+..-.... .........++.+..+ +++++.|+. + .
T Consensus 491 ~~h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~ 568 (695)
T 2zwa_A 491 FRH-SACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD 568 (695)
T ss_dssp BSC-EEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred ccc-eEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence 112 222223 788888888655 6889998765421111 1111112233455554 667777765 2 4
Q ss_pred eEEEEeCCCCCC-----CcceEEecccccceeEEEEccCCCcEEEeecCC------CCCeEEEEECCCCeEE
Q 040533 196 LVHVWDHSKMSS-----SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT------QDGCIKIWNVQKGTCI 256 (364)
Q Consensus 196 ~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~------~d~~i~i~d~~~~~~~ 256 (364)
.+.+||+.+... ...+.........-.+++...++ .+++.||.+ ....+.+||+.+.+-.
T Consensus 569 ~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 569 KAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 588999876542 11122111011111122333323 677777521 2356999999887654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.061 Score=44.54 Aligned_cols=228 Identities=13% Similarity=0.105 Sum_probs=104.1
Q ss_pred EEEEEecCCcEEEEecCCcceeee-eec-CCCcEEEEEeecCCCCEEEEeeC----CC-------cEEEEEcccCcceee
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRN-LEG-HDKRVATASWNHWNGHILTSGSQ----DK-------SIINHDVRVSNNVTS 167 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg-------~i~~~d~~~~~~~~~ 167 (364)
.++.|+. .+..||..+++.... +.. ....-.+++ .. ++.+++.|+. ++ .+..||..+..-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4444542 488999887765431 111 111122222 33 7788888873 12 167788765542111
Q ss_pred -eeecccCcEEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 168 -RINAHTAEVCGLKWSNEGNLLASGGDD-------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 168 -~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
.+...........+ ++++++.|+.+ ..+.+||..+..- ..+..+...... .+++. .++ .+++.|+.
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~-~~~~~-~~~-~iyv~GG~ 167 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW-SEVKNLPIKVYG-HNVIS-HNG-MIYCLGGK 167 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE-EEECCCSSCEES-CEEEE-ETT-EEEEECCE
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE-eECCCCCCcccc-cEEEE-ECC-EEEEEcCC
Confidence 11111111112222 56677777753 3477888765422 111111111111 12222 233 67777641
Q ss_pred C----CCCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeecccccc
Q 040533 240 T----QDGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQHQTS 311 (364)
Q Consensus 240 ~----~d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~~ 311 (364)
. .-..+.+||+.+.+-...-.... .-.+++.. +++.++.|.. ........+.+||+.+.+- +..+.....
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 245 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGV-TEDGLSASVEAFDLKTNKWEVMTEFPQERS 245 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEE-ETTEEEEEEEEEETTTCCEEECCCCSSCCB
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCc-CCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 1 12458999998875443322111 11222222 4455555432 1001124678899876532 222221111
Q ss_pred ceeEEeecCCCCEEEEEeCC--------------CcEEEEEeeCC
Q 040533 312 RILELSQSPDGLTVVSAAAD--------------ETLRFWEAFGP 342 (364)
Q Consensus 312 ~i~~i~~~~~~~~l~~~~~d--------------g~i~vw~~~~~ 342 (364)
....+. -++++++.|+.+ ..+.+||+.+.
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 112222 256777777654 34677776654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.07 E-value=0.27 Score=48.40 Aligned_cols=268 Identities=11% Similarity=0.099 Sum_probs=135.1
Q ss_pred EEEEEeCCeEEEEEC--CCCceeeeeee-cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE-E
Q 040533 58 ILAIALGLELYLWKQ--ENGEVQKLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV-A 133 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~--~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v-~ 133 (364)
++++-.||.+.-+.+ .+++.....+. -| ..++.=..+...+..-+.+..+....+|.-+ ++.... .-.-..+ .
T Consensus 620 L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~ 696 (1158)
T 3ei3_A 620 LLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNY 696 (1158)
T ss_dssp EEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCE
T ss_pred EEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhce
Confidence 455556787655544 45554333211 13 3344444444444433333345555555433 332211 1111223 3
Q ss_pred EEEeecCC-CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC------------------
Q 040533 134 TASWNHWN-GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD------------------ 194 (364)
Q Consensus 134 ~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------ 194 (364)
...|+... .+-++..+ ++.+++..+...+......-.-...+..++++|+.+.++.+..+
T Consensus 697 ~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 775 (1158)
T 3ei3_A 697 MCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSAS 775 (1158)
T ss_dssp EEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHH
T ss_pred EeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhh
Confidence 33454311 23344333 45688888754433222222334567888888877655544311
Q ss_pred -------------------------------CeEEEEeCCCCCCCcceEEecc-cccceeEEE---EccCCCcEEEeecC
Q 040533 195 -------------------------------NLVHVWDHSKMSSSKCLHRFRD-HRAAVKALA---WCPYQFNVLASGGG 239 (364)
Q Consensus 195 -------------------------------~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~~~~~~g 239 (364)
+.|++.|-.+. +.+..+.- ....+.+++ |..+...+++.|.+
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa 852 (1158)
T 3ei3_A 776 TQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 852 (1158)
T ss_dssp HHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEE
T ss_pred hhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEee
Confidence 12445553322 22222221 123344444 44333456665531
Q ss_pred --------CCCCeEEEEECCCCeE--EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 240 --------TQDGCIKIWNVQKGTC--IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 240 --------~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
...|.|.+|++.+++. +...+..+++++++-- +|+.+ ++. +..|++|++...+.+..-..+
T Consensus 853 ~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Ll-a~i-------g~~l~vy~l~~~~~L~~~~~~ 923 (1158)
T 3ei3_A 853 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLL-ASI-------NSTVRLYEWTTEKELRTECNH 923 (1158)
T ss_dssp ECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEE-EEE-------TTEEEEEEECTTSCEEEEEEE
T ss_pred ecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEE-EEc-------CCEEEEEECCCCceEEEEeec
Confidence 1358899999875543 3344556888888754 34444 443 789999999876544411111
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
-..|..+.....+.+++.|..-..|.+...+.
T Consensus 924 ~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 924 YNNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp CCCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 11233333333577999998888888877664
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.16 Score=44.51 Aligned_cols=104 Identities=9% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--eeec------CCCcEEEEEeecCC---CCEEEEeeC------
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NLEG------HDKRVATASWNHWN---GHILTSGSQ------ 150 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~------~~~~v~~~~~~~~~---~~~l~~~~~------ 150 (364)
.....|+|.|+|+++++-...+.|++++..+++... .+.. .......|+|+| + +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccCC
Confidence 356799999999977765444578888865554322 2211 245677999998 4 444444332
Q ss_pred -------CCcEEEEEcccCc-------ceeeeee-cccCcEEEEEEcCCCCEEEEEe
Q 040533 151 -------DKSIINHDVRVSN-------NVTSRIN-AHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 151 -------dg~i~~~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
...|..+++.... .+...+. ........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2345556554321 1111111 1123468999999998777655
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.075 Score=43.91 Aligned_cols=133 Identities=9% Similarity=0.006 Sum_probs=71.4
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--------CcEEEEecCCcceee--eeecCCCcEEEE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--------SKLQLWDAETSKLIR--NLEGHDKRVATA 135 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~~~~~~~~--~~~~~~~~v~~~ 135 (364)
.+.+||..+++...+..++.....-..+.+ ++..++.|+.+ ..+.+||..+.+-.. .+.........+
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred ceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE
Confidence 388999998877555443322222222222 56677777642 358999988765332 222111222222
Q ss_pred EeecCCCCEEEEeeC-C-----CcEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCC
Q 040533 136 SWNHWNGHILTSGSQ-D-----KSIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGDDN-----LVHVWDHS 203 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~-d-----g~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~ 203 (364)
.. ++.+++.|+. + ..+.+||+.+..-.. ..+........++.+ ++++++.|+.++ .+.+||+.
T Consensus 146 ~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 146 SH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp EE---TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred EE---CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 32 7778888876 2 368889987654211 111111111122222 567777777554 57888976
Q ss_pred CC
Q 040533 204 KM 205 (364)
Q Consensus 204 ~~ 205 (364)
+.
T Consensus 221 ~~ 222 (315)
T 4asc_A 221 DN 222 (315)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.032 Score=46.45 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=66.5
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecC-CCcEEEEEee--cCCCCEEEEe-eCCCcEEEEEcccCcceeeeeec----
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGH-DKRVATASWN--HWNGHILTSG-SQDKSIINHDVRVSNNVTSRINA---- 171 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~---- 171 (364)
..+++++.||.|.-+|.++|+....++.. ..++....-. +.++..++.. +.||.|..++..++.... .+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence 47888999999999999999998888754 1222221110 1122344443 589999999987664321 1111
Q ss_pred ccCcEEE---EEE-----cCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 172 HTAEVCG---LKW-----SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 172 ~~~~v~~---~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
...++.. ... ...+..+++|+.+|.+...|+++++. +..+.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~---~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI---ISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE---EEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE---EEEEe
Confidence 1122221 000 01345788999999999999887643 55543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.18 Score=41.34 Aligned_cols=212 Identities=8% Similarity=-0.002 Sum_probs=113.1
Q ss_pred cCCCCEEEEEe--cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC--------------CcEEEEEc
Q 040533 96 SQDAKTLAVGY--MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD--------------KSIINHDV 159 (364)
Q Consensus 96 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~~~d~ 159 (364)
++++.++.... .++.|...+.+.. ....+... . +--+++ +++.|+-+... ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~~--~--~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSND--T--AMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEEE--E--EEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccCC--c--eeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 34566666554 2455666655433 33333321 1 234466 66666655432 35666666
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEe--CC--CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG--DD--NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
...+ ...+.. .. +..|+++++.|+-.. .+ ..|+..++.... ...+..+.. ..++++++.++.
T Consensus 96 dg~~--~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~----~~~lt~~~~----~~~~~~g~~iy~ 161 (302)
T 3s25_A 96 NGHG--STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE----KKKIKNHYL----FTCNTSDRYFYY 161 (302)
T ss_dssp TSCC--CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC----CEEEESSCC----CCSEEETTEEEE
T ss_pred CCCc--ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC----eEEEeCCCc----eEeeEECCEEEE
Confidence 6444 222222 22 236777888888776 33 455555554321 233333322 456778888887
Q ss_pred eecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeE
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILE 315 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 315 (364)
+.. ....|...++..+.....+. .... ..+.|++.+|+-... .....|..-++..... ..+.. ..+
T Consensus 162 t~~--g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~----~~~~~I~~~~ldG~~~-~~Lt~--~~~-- 227 (302)
T 3s25_A 162 NNP--KNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDV----NRDNAIVHVNINNPNP-VVLTE--ANI-- 227 (302)
T ss_dssp ECT--TTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEG----GGTTEEEEECSSSCCC-EECSC--SCE--
T ss_pred EeC--CCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEc----CCCcEEEEEECCCCCe-EEEeC--CCc--
Confidence 753 46789999987766544433 2222 335688888876542 1134677777765443 23321 222
Q ss_pred EeecCCCCEEEEEeC--CCcEEEEEeeC
Q 040533 316 LSQSPDGLTVVSAAA--DETLRFWEAFG 341 (364)
Q Consensus 316 i~~~~~~~~l~~~~~--dg~i~vw~~~~ 341 (364)
..|+|++.+|+-++. .+.|..-++..
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 337778887776532 34455555444
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.13 Score=39.55 Aligned_cols=182 Identities=13% Similarity=0.031 Sum_probs=98.3
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcc--e--eeeeecc--cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCc---ce
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNN--V--TSRINAH--TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK---CL 211 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~--~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~ 211 (364)
.+.+|+...+| +++.=....... . .....+. -..+..++|+|+|.+.++ .+|.++-.+..+..... .-
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 45567777777 555443332221 0 0011122 236779999999986666 67777666643321110 00
Q ss_pred EEec--ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE------EEEE-ec-CCCeEEEEEcCCccceeeec
Q 040533 212 HRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC------IHSV-DT-KAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 212 ~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~-~~-~~~v~~~~~~~~~~~l~~~~ 281 (364)
..+- +-.. ..++.|.|++ .+.++ + ||.|.-++-.+... -..+ .. -..+..+.+.|+|.+.++.
T Consensus 80 t~IG~~Gw~~-F~a~~fD~~G-~LYav-~---dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGNGGWNQ-FQFLFFDPNG-YLYAV-S---KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEECSCGGG-CSEEEECTTS-CEEEE-E---TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEeccccccc-ceEEEECCCC-CEEEe-C---CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 1110 1111 4789999998 55555 3 79998887633111 0111 11 1468999999999988876
Q ss_pred cCCccCCCCeEEEeeCCCCceee------ecc-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWG------ELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~------~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
++.++-....+..... .+- ..-..-+.+.|.++|.+.++. +| ++|....++
T Consensus 153 -------dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 153 -------GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp -------TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCCC
T ss_pred -------CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCcc
Confidence 6665544433222111 111 122234557799999776665 66 566655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.16 Score=50.25 Aligned_cols=194 Identities=16% Similarity=0.187 Sum_probs=114.4
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-ceeeeeecC----CC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGH----DK 130 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~----~~ 130 (364)
..++|.-.+..+.|+|+++.+..+...+ ...|.--.|-.+. .|+..+ +..|.-|++... .+.+.+..| ..
T Consensus 77 ~~iiALrag~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred cceEEEecCCeEEEeehHHhhhhccccc---CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccC
Confidence 3588888889999999988776555544 4467777786443 455554 467999999643 333334333 45
Q ss_pred cEEEEEeecCCCCEEEEee-------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcC---CCCEEEEEeC---CCeE
Q 040533 131 RVATASWNHWNGHILTSGS-------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN---EGNLLASGGD---DNLV 197 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~---d~~i 197 (364)
.|..-.-++ +.++++..+ -.|.+.+|..+.+. ...+.+|......+.... ....++.+.. .+.+
T Consensus 152 QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 152 QIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred eeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 666677777 666665433 34778899876443 445566655443333321 1123333322 2689
Q ss_pred EEEeCCCCCCCcceE------Eec---ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 198 HVWDHSKMSSSKCLH------RFR---DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~------~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
+|-++.....+.+.. .+. ...+...++..++....+++.. .-|.+.+||+.++.++..-.
T Consensus 229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it---k~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe---cCceEEEEecccchhhhhcc
Confidence 999886531111111 011 1133344666666554444432 68999999999998875543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.26 Score=41.16 Aligned_cols=232 Identities=12% Similarity=0.102 Sum_probs=119.2
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-eee----eecccCcEEEEEEcCC---CCEEEEE---e
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSR----INAHTAEVCGLKWSNE---GNLLASG---G 192 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~----~~~~~~~v~~~~~~~~---~~~l~~~---~ 192 (364)
.+...-...+.|+|.| ++.++++--..|.|++++...+... +.. ..........|+++|+ +..|+.. .
T Consensus 26 ~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3333445678999999 8887776655899999886544321 111 1123456889999995 3444443 2
Q ss_pred CCCeEEEEeCCCCC-------CCcceE-Eec-ccccceeEEEEccCCCcEEEeecC----------CCCCeEEEEECCCC
Q 040533 193 DDNLVHVWDHSKMS-------SSKCLH-RFR-DHRAAVKALAWCPYQFNVLASGGG----------TQDGCIKIWNVQKG 253 (364)
Q Consensus 193 ~d~~i~iwd~~~~~-------~~~~~~-~~~-~~~~~v~~~~~~~~~~~~~~~~~g----------~~d~~i~i~d~~~~ 253 (364)
.++.|.-|.+.... ..+.+. .+. .....-..|.|.|++..++.+|.+ +..|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 34566666654311 111111 121 112234679999999544443321 01345555554321
Q ss_pred ---------eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC--eEEEeeC--------CCC--------ceeeec
Q 040533 254 ---------TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ--KLCLWKY--------PHM--------TKWGEL 306 (364)
Q Consensus 254 ---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i~i~d~--------~~~--------~~~~~~ 306 (364)
..+... .......++|+|+|.+.++-.+ .++ .|.+... ..+ .++..+
T Consensus 185 ip~~nPf~~~~i~a~-G~RNp~Gla~dp~G~L~~~d~g-----~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~ 258 (347)
T 3das_A 185 PAPGNPFPGSPVYSY-GHRNVQGLAWDDKQRLFASEFG-----QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW 258 (347)
T ss_dssp BCTTCSSTTCCEEEB-CCSBCCEEEECTTCCEEEEECC-----SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred ccCCCCCCCCeEEee-CCCCcceEEECCCCCEEEEecC-----CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence 111111 2234678999998776655332 122 2222210 001 112222
Q ss_pred cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC----cceeccCCceeeeeeccC
Q 040533 307 QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS----GDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 307 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~v~~~~~sp~ 363 (364)
..+......++|. +|..++..-..+.|....+...... ..+.+....+.+|+..|.
T Consensus 259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD 318 (347)
T 3das_A 259 STDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG 318 (347)
T ss_dssp CTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET
T ss_pred CCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC
Confidence 2222345667775 4556665556667777777654321 122233456788877663
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.53 Score=44.22 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=143.3
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecC----CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTG----EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV 132 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v 132 (364)
.+..+. .+.|..++..+++..... ... ....|.++...+++..|..|+. +-+..++..+++...........|
T Consensus 158 ~lWigt-~~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i 234 (758)
T 3ott_A 158 QIYVGT-YNGLCRYIPSNGKFEGIP-LPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSI 234 (758)
T ss_dssp CEEEEE-TTEEEEEETTTTEEEEEC-CCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEE
T ss_pred CEEEEe-CCCHhhCccCCCceEEec-CCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeE
Confidence 344444 456888888776543221 111 1234788888777776666664 458888887665432211123457
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee--------cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN--------AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.++.... ++.+.+ |+.+ -+.+++..+... ..+. -....|.++....+|. |-.|+..| +.++....
T Consensus 235 ~~i~~d~-~g~lWi-gT~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~ 307 (758)
T 3ott_A 235 KSLALDG-NGDLLA-GTDN-GLYVYHNDTTPL--QHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS 307 (758)
T ss_dssp EEEEECT-TCCEEE-EETT-EEEEECCTTSCC--EEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC
T ss_pred EEEEEcC-CCCEEE-EeCC-ceeEEecCCCcE--EEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC
Confidence 7777765 555544 4544 477888765431 1111 1234588888877775 44555566 55443211
Q ss_pred CCCCcceEEec-----ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEec--------CCCeEEEE
Q 040533 205 MSSSKCLHRFR-----DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVDT--------KAQICGLE 269 (364)
Q Consensus 205 ~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~--------~~~v~~~~ 269 (364)
..+ ..... .....|.++.-..++...+.+ .+| +..++..+++ ....+.. ...|.++.
T Consensus 308 --~~~-~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt----~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~ 379 (758)
T 3ott_A 308 --ALQ-FIPISQITGTGDGNQFYSLFRDSKGFYWFGG----ANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIY 379 (758)
T ss_dssp ---CE-EEEHHHHSCSCCCCBEEEEEECTTCCEEEEE----TTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEE
T ss_pred --cee-EEecccCCCCCCCceEEEEEEcCCCCEEEee----CCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEE
Confidence 111 11110 112457888877777444433 344 6666655432 1222221 23488888
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec--cc----cccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL--QH----QTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~----~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
-..+|..-+.. ++.+..||..+++...-. .. ....|.++...++|.+ -.|+..+-|.++|..
T Consensus 380 ~d~~g~lWigt--------~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-WigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 380 EDKEQQLWIAT--------DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL-WISTCLGGIFVVDKH 447 (758)
T ss_dssp ECTTSCEEEEE--------TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEE-EEEESSSCEEEEEHH
T ss_pred ECCCCCEEEEe--------CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCE-EEEECCCceEEEccc
Confidence 88888766644 557899998776543211 11 2245788888777764 446666667788754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.51 Score=43.85 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=100.8
Q ss_pred CCCCEEEEEecC----CcEEEEecCCcceeeee-e-------cCCCcEEEEEeecCCCCEEEEeeCCC------cEEEEE
Q 040533 97 QDAKTLAVGYMA----SKLQLWDAETSKLIRNL-E-------GHDKRVATASWNHWNGHILTSGSQDK------SIINHD 158 (364)
Q Consensus 97 ~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~-~-------~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~~~d 158 (364)
.++..++.|+.+ ..+.+||..+++....- . .....-..+.+.. ++.+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 456777777743 35888998876543322 1 1111222333322 566777776543 477888
Q ss_pred cccCcceeeeeec--ccCcEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCCCcceEE---ecccccceeEEEEccCCC
Q 040533 159 VRVSNNVTSRINA--HTAEVCGLKWSNEGNLLASGGDDN--LVHVWDHSKMSSSKCLHR---FRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 159 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~ 231 (364)
+.+..- ..... ....-.+++...++++++.|+.++ .+.+||..+..- ..+.. ..........+.+.....
T Consensus 475 ~~t~~W--~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTREW--SMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF-KDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp TTTTEE--EECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE-EECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred CCCCcE--EECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce-EEccCCCCCCCcccceeEEEEeCCCC
Confidence 876542 11111 111112233323778888887654 689999876432 11111 111111223355555534
Q ss_pred cEEEeecCCCC-----CeEEEEECCCCeE-----EEEE-ec--CC-CeEEEEEcCCccceeeeccCCcc--CCCCeEEEe
Q 040533 232 NVLASGGGTQD-----GCIKIWNVQKGTC-----IHSV-DT--KA-QICGLEWNRHHKEILSGHGFSSS--GDGQKLCLW 295 (364)
Q Consensus 232 ~~~~~~~g~~d-----~~i~i~d~~~~~~-----~~~~-~~--~~-~v~~~~~~~~~~~l~~~~~~~~~--~~~~~i~i~ 295 (364)
.+++.||...+ +.+.+||+.+..- -..+ .. .. .-.++....+++.++.|...... .....+.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 67787752122 4689999988761 1222 11 11 11223333335555555321100 125679999
Q ss_pred eCCCCc
Q 040533 296 KYPHMT 301 (364)
Q Consensus 296 d~~~~~ 301 (364)
|+.+.+
T Consensus 632 d~~t~~ 637 (695)
T 2zwa_A 632 DPLSET 637 (695)
T ss_dssp ETTTTE
T ss_pred ECCCCe
Confidence 988754
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.46 Score=42.11 Aligned_cols=234 Identities=8% Similarity=0.030 Sum_probs=131.1
Q ss_pred EEEEEecCCcEEEEecCCcceeeeeecC-------------------------CCcEEEEEeecC----CCCEEEEee-C
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRNLEGH-------------------------DKRVATASWNHW----NGHILTSGS-Q 150 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~----~~~~l~~~~-~ 150 (364)
.+.+|+..|.|+|+-+.+++.+..+.-. .+......+|-+ +|++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3678889999999999998887765310 111111122211 456677666 3
Q ss_pred CCcEEEEEcccCcceeeeeecccCcEEEEEEc--CCCCEEEEEeCC-------CeEEEEeCCCCCCCcceEEeccc----
Q 040533 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWS--NEGNLLASGGDD-------NLVHVWDHSKMSSSKCLHRFRDH---- 217 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~---- 217 (364)
+..|-..+++.-+.-...-......+..+.|- |+..+++.+++. |.. ..+...+.......+.+.
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETTTCSE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCCccEE
Confidence 45677777766553222223455678888886 677788887753 221 100111110000001110
Q ss_pred ------ccceeEEEEccCCCcEEEeecCC------------CCC-------------------------eEEEEECCC--
Q 040533 218 ------RAAVKALAWCPYQFNVLASGGGT------------QDG-------------------------CIKIWNVQK-- 252 (364)
Q Consensus 218 ------~~~v~~~~~~~~~~~~~~~~~g~------------~d~-------------------------~i~i~d~~~-- 252 (364)
.+....+...+++.+.+.++-.+ ... .+.+.|.+.
T Consensus 230 ~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 230 AFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 11222334456666666555311 111 244555544
Q ss_pred --C-eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-------------eeeccccccceeEE
Q 040533 253 --G-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-------------WGELQHQTSRILEL 316 (364)
Q Consensus 253 --~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-------------~~~~~~~~~~i~~i 316 (364)
+ ...+.+........+..+|+|++++++.. -+.++.++|+..... ..+.+. .-.....
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK-----LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt 383 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK-----LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHT 383 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECT-----TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEE
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC-----CCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEE
Confidence 1 23344445556678999999999998754 378999999874211 122222 2345788
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+|.++|.-..+---|..|.-|++...
T Consensus 384 ~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 384 TFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred EECCCCceEeeeeecceEEEEeccHH
Confidence 99999954555568999999998753
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.36 Score=40.56 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=28.2
Q ss_pred eEEEeeCCCC--ceeeeccccccceeEEeecCCCCEEEEEeCCC------cEEEEEeeCCCCCc
Q 040533 291 KLCLWKYPHM--TKWGELQHQTSRILELSQSPDGLTVVSAAADE------TLRFWEAFGPSGSG 346 (364)
Q Consensus 291 ~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~i~vw~~~~~~~~~ 346 (364)
.+.+||+.+. +.+..+......-.++. .++++++.|+.++ .|.++++++++...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 5778888754 33333332222222222 3777888888653 35566777766544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.44 Score=41.62 Aligned_cols=108 Identities=10% Similarity=0.142 Sum_probs=59.8
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-eeeeec------ccCcEEEEEEcCC---CCEEEEEeC-----
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSRINA------HTAEVCGLKWSNE---GNLLASGGD----- 193 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~----- 193 (364)
-.....|+|.| +++++++-...+.|++++...+... +..+.. .......|+|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 8887776544457888876433321 111111 2456789999995 455554432
Q ss_pred --------CCeEEEEeCCCCC----CCcceE-Eecc-cccceeEEEEccCCCcEEEee
Q 040533 194 --------DNLVHVWDHSKMS----SSKCLH-RFRD-HRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 194 --------d~~i~iwd~~~~~----~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~ 237 (364)
...|.-+++.... ..+.+. .+.. .......|+|.|+|..+++++
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2345556543211 111121 1211 123468899999996444444
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.53 Score=41.77 Aligned_cols=213 Identities=13% Similarity=0.115 Sum_probs=121.6
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEc--CCCCEEEEEec-------CCcE---------EE---EecCCccee
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWS--QDAKTLAVGYM-------ASKL---------QL---WDAETSKLI 122 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~-------dg~i---------~i---w~~~~~~~~ 122 (364)
+..|-..++...++.++.+++ ....+..++|- |+..|++++++ ||.. .+ .|.++.+..
T Consensus 152 n~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CcceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 357778888888888888774 46678888886 68888888875 2321 11 122222222
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCC---------------cEEEEEc-------------------------cc-
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDK---------------SIINHDV-------------------------RV- 161 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~~~d~-------------------------~~- 161 (364)
.++.- .+....+...+ ++.+.++.+.+. .+.++|+ +.
T Consensus 231 ~Qv~v-~gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~ 308 (638)
T 3sbq_A 231 FQVIV-DGNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKK 308 (638)
T ss_dssp EEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCB
T ss_pred EEEEc-CCChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccc
Confidence 21110 11222233344 455555544321 2344443 22
Q ss_pred ---CcceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCC---------CcceEEecccccceeEEEEcc
Q 040533 162 ---SNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSS---------SKCLHRFRDHRAAVKALAWCP 228 (364)
Q Consensus 162 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~v~~~~~~~ 228 (364)
+......+ .-......+..+|||++++.++ -+.++.++|+++... ...+..-..-.-.....+|.+
T Consensus 309 ~~~~~~~~~~i-P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~ 387 (638)
T 3sbq_A 309 DGKDSKFTRYV-PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG 387 (638)
T ss_dssp TTBCCSSEEEE-EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS
T ss_pred cccCCceEEEE-eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC
Confidence 11111111 1223345688999999888776 567899999874211 011111111233456789999
Q ss_pred CCCcEEEeecCCCCCeEEEEECCCC----------eEEEEEecCCCeEEEEE------cCCccceeeeccC
Q 040533 229 YQFNVLASGGGTQDGCIKIWNVQKG----------TCIHSVDTKAQICGLEW------NRHHKEILSGHGF 283 (364)
Q Consensus 229 ~~~~~~~~~~g~~d~~i~i~d~~~~----------~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~~ 283 (364)
+| +...+-. .|..|.-|++... ..+..+..+-++-.+.- .++|++|++...+
T Consensus 388 ~G-~aYTtlf--idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~ 455 (638)
T 3sbq_A 388 RG-NAYTTLF--IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKF 455 (638)
T ss_dssp SS-EEEEEET--TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESC
T ss_pred CC-ceEeeee--ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEeccc
Confidence 98 6777765 8999999998653 45666766665555544 5778888776543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.018 Score=47.97 Aligned_cols=116 Identities=9% Similarity=0.019 Sum_probs=63.9
Q ss_pred CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEE--cC-CCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecc-
Q 040533 142 GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW--SN-EGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRD- 216 (364)
Q Consensus 142 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~- 216 (364)
+.+++.++.||.|.-.|..+++.....-.....++....- .+ ++..++.. +.||.|..++..++.. ...+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~---~~~~~~~ 86 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ---KLPLSIR 86 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE---EEEEEHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE---Eeeeccc
Confidence 3578888999999999988776533322221122222110 01 22333333 5899999999765421 122111
Q ss_pred ---cccceeE---EEE-cc----CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 217 ---HRAAVKA---LAW-CP----YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 217 ---~~~~v~~---~~~-~~----~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
...++.. ... .+ .+ ..+.+++ .+|.+...|+++|+.+..+....
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs--~~g~l~ald~~tG~~~W~~~~~~ 141 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVED-EKVYTGS--MRTIMYTINMLNGEIISAFGPGS 141 (339)
T ss_dssp HHHTTCSEEEECC----------CC-EEEEECE--EEEEEEEEETTTCCEEEEESTTC
T ss_pred cceeccccccCCCceeecccccccC-CEEEEEe--cCCEEEEEECCCCcEEEEEecCC
Confidence 0111111 000 00 22 3455554 89999999999999999987553
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.56 Score=38.43 Aligned_cols=237 Identities=14% Similarity=0.074 Sum_probs=124.7
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--------------CcEEEEecCCcceeeeeecCC
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--------------SKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~~ 129 (364)
++.|+..+.+.....++..- .+--+++++.+|+..... ..|+..+++.++... +...
T Consensus 36 ~~~ly~~~~dg~~~~~l~~~-------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~- 106 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSND-------TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD- 106 (302)
T ss_dssp TTEEEEEETTSCSCEEEEEE-------EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS-
T ss_pred CceEEEEcCCCCCCEEccCC-------ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC-
Confidence 46777777666554444321 134567899988887653 357777777665332 3222
Q ss_pred CcEEEEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNLVHVWDHSKMS 206 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~ 206 (364)
. ...|++ .++.|+-.. .++.-.||.+.........+..+.. .+++++++.|+-.+. ...|...++....
T Consensus 107 -~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 107 -P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp -C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred -C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 2 226677 777777655 3444444444332222333433332 456778888876665 5678888866432
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
. ..+.. +... ..+.|++..++.+..+ ....|..-++..... ..+. ...+ ..++|.+..|+-+..
T Consensus 179 ~----~~l~~--~~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~-~~Lt-~~~~--~~~~~~g~~Iy~~~~---- 242 (302)
T 3s25_A 179 E----ALFYD--CNCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNP-VVLT-EANI--EHYNVYGSLIFYQRG---- 242 (302)
T ss_dssp E----EEEEC--SCEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCC-EECS-CSCE--EEEEEETTEEEEEEC----
T ss_pred E----EEEeC--CCcc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCe-EEEe-CCCc--ceEEECCCEEEEEEC----
Confidence 1 22211 2222 3356888888777531 124677777765442 2222 2333 347788888875421
Q ss_pred CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe-CCCcEEEEE
Q 040533 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA-ADETLRFWE 338 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~ 338 (364)
...+.|..-++........... .+..+ ++.+.+|+-.. ..+.|..-+
T Consensus 243 ~~~~~i~~~~~DG~~r~~l~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 243 GDNPALCVVKNDGTGFKELAKG---EFCNI--NVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp SSSCEEEEEETTSCCCEEEEES---CEEEE--EECSSEEEEEETTTCCEEEEE
T ss_pred CCCcEEEEEECCCCccEEeeCC---ccceE--EEeCCEEEEEECCCCeEEEEE
Confidence 2246777777654333222221 23333 44566665554 334444333
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.83 E-value=1.2 Score=41.71 Aligned_cols=265 Identities=12% Similarity=0.095 Sum_probs=142.6
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE- 126 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~- 126 (364)
+.++.-..++.+=++.++.+..||..+.+..... ......|.++.. .++ .|..|+.+ -+..||..+++.. .+.
T Consensus 65 i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~--~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~ 138 (758)
T 3ott_A 65 IYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPE--TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDT 138 (758)
T ss_dssp EEEEEEETTTEEEEEETTEEEEEETTTTEECCCS--CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECH
T ss_pred EEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECcc--cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Eecc
Confidence 4444334444444444567899998877653311 112335777654 344 56667655 5888998765543 221
Q ss_pred ----cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec----ccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 127 ----GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA----HTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 127 ----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
.....|.++.... ++.+.+ |+.+ -+..++..+.......... ....|.++...+++..|..|+. +-+.
T Consensus 139 ~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~ 214 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF 214 (758)
T ss_dssp HHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred CCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence 1234688887765 565554 4544 4777886644311111111 1234888888777665555664 4588
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------cCCCeEEEEE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------TKAQICGLEW 270 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~ 270 (364)
.+|...... .....+ ....|.++...+++...+.+ .+ -+.+++..+++...... ....|.++..
T Consensus 215 ~~~~~~~~~-~~~~~l--~~~~i~~i~~d~~g~lWigT----~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 286 (758)
T 3ott_A 215 QYFPSTGQI-KQTEAF--HNNSIKSLALDGNGDLLAGT----DN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFA 286 (758)
T ss_dssp EEETTTTEE-EEEEEE--EEEEEEEEEECTTCCEEEEE----TT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEE
T ss_pred EEcCCCCeE-EeccCC--CCCeEEEEEEcCCCCEEEEe----CC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEE
Confidence 888654321 111111 23458888888777444443 23 48888887654432211 1234888888
Q ss_pred cCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-----ccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-----HQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
..+|..-+... .| +.++.....-...... .....|.++.-..+|.+.+. +.+| +..++..
T Consensus 287 D~~g~lWiGT~-------~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~ 351 (758)
T 3ott_A 287 DQEHNIWLGTD-------YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDP 351 (758)
T ss_dssp CTTCCEEEEES-------SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCT
T ss_pred cCCCCEEEEeC-------Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccc
Confidence 88887666542 34 4444322111111110 12346888888888875554 4444 5555543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.40 E-value=0.85 Score=36.89 Aligned_cols=226 Identities=14% Similarity=0.097 Sum_probs=116.1
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
..|..++.... ..++. . ||.|..|-......+..-......|..++.. ....++. . ||.|..|-.....++-.
T Consensus 24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G--~~hs~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC--CCEEEEE-E-CCEEEEeeCCCCCCCCC
Confidence 35777776533 23333 4 8999999765432222111123356666653 2233333 4 89999998665433211
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
...-...|..++...+ ..+.-. +|.|+.|-...... +-........|..++.-.. +.++. .||.|..
T Consensus 97 -P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gq---lg~~~~~~~~i~~i~~G~~--~~~~l----~~G~v~~ 163 (282)
T 3qhy_B 97 -PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQ---TTVPAEAQSGVTALDGGVY--TALAV----KNGGVIA 163 (282)
T ss_dssp -CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTST---TSCCGGGGSSEEEEEECSS--EEEEE----ETTEEEE
T ss_pred -CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCc---CCCCccCCCCeEEEEcccC--EEEEE----ECCEEEE
Confidence 1112346777776654 333344 89999997544221 1111112345666655433 22222 2688888
Q ss_pred EECCCCeEEE-EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 248 WNVQKGTCIH-SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 248 ~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
|-......+. .......+..++-......++ . ++.++.|-......+..-......|..++..... .++
T Consensus 164 wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~--------~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~a 233 (282)
T 3qhy_B 164 WGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-K--------DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLA 233 (282)
T ss_dssp EECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E--------TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEE
T ss_pred ecCCCCCCCCCceecCCCeEEEEecCCEEEEE-E--------CCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEE
Confidence 8654321110 001123456665544443333 2 8888888765433322111122356677654433 233
Q ss_pred EEeCCCcEEEEEeeCCCCC
Q 040533 327 SAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~ 345 (364)
-. ||.|+.|=.....++
T Consensus 234 -l~-~g~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 234 -LK-NGKVIAWGSSRTAPS 250 (282)
T ss_dssp -EE-TTEEEEESTTCCCCG
T ss_pred -EE-CCEEEEecCCCCccc
Confidence 33 899999976654443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.37 E-value=1 Score=37.75 Aligned_cols=225 Identities=10% Similarity=0.075 Sum_probs=115.9
Q ss_pred eecccCCCc-c-EEEEEeCCeEEEEECCCCceee-eeee----cCCCCCceEEEEcCC---CCEEEEEe-c-------CC
Q 040533 48 SNMMDWGRN-N-ILAIALGLELYLWKQENGEVQK-LLKV----TGEDDFPTSISWSQD---AKTLAVGY-M-------AS 109 (364)
Q Consensus 48 ~~~~~~~~~-~-~~~~~~~~~i~iw~~~~~~~~~-~~~~----~~~~~~v~~~~~s~~---~~~l~~~~-~-------dg 109 (364)
...++|.|+ + ++++...+.|++++.. +.... +..+ .........++++|+ +..|.+.. . ..
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 456777775 4 6666678899999854 33211 1111 122345689999996 44454443 2 23
Q ss_pred cEEEEecCCc--c--eeee-eec------CCCcEEEEEeecCCCCEEEEeeC-------------CCcEEEEEcccCc--
Q 040533 110 KLQLWDAETS--K--LIRN-LEG------HDKRVATASWNHWNGHILTSGSQ-------------DKSIINHDVRVSN-- 163 (364)
Q Consensus 110 ~i~iw~~~~~--~--~~~~-~~~------~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~~~d~~~~~-- 163 (364)
.|..|++..+ . ..+. +.. ....-..++|.| ++.++++.+. .|.|.-++....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 5666666432 1 1111 111 111235699999 8876666433 2456666665320
Q ss_pred ----------ceeeeeecccCcEEEEEEcC-CCCEEEEEeCC--CeEEEEeCCCCCC-----------------------
Q 040533 164 ----------NVTSRINAHTAEVCGLKWSN-EGNLLASGGDD--NLVHVWDHSKMSS----------------------- 207 (364)
Q Consensus 164 ----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d--~~i~iwd~~~~~~----------------------- 207 (364)
.......++ .....++|+| ++.+ .++... +.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l-~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNAL-WLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEE-EEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCE-EEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111111233 3467899999 5544 443322 1112222211110
Q ss_pred -----CcceEEecccccceeEEEEcc-------CCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEc
Q 040533 208 -----SKCLHRFRDHRAAVKALAWCP-------YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWN 271 (364)
Q Consensus 208 -----~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~ 271 (364)
..++..+..| .....+.|.. ++ .++++.. ..+.|...++..++...... ....+..+++.
T Consensus 256 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQ-KLFIGAL--KDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTT-EEEEEET--TTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCccCCeEEeCCC-cCcceeEEECCccCcccCC-cEEEEEc--cCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 1112222222 3456677753 23 4555543 56788888877665443321 13468899999
Q ss_pred CCccceeee
Q 040533 272 RHHKEILSG 280 (364)
Q Consensus 272 ~~~~~l~~~ 280 (364)
|+|.+.++.
T Consensus 332 pdG~lyv~t 340 (353)
T 2g8s_A 332 PDGYLYVLT 340 (353)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 998766543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.65 E-value=1.8 Score=36.81 Aligned_cols=294 Identities=8% Similarity=-0.013 Sum_probs=132.0
Q ss_pred cEEEEEeCCeEEEEECCC-C-ceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCC----cEEEEecCCcceeeeeec--
Q 040533 57 NILAIALGLELYLWKQEN-G-EVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMAS----KLQLWDAETSKLIRNLEG-- 127 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~-~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~-- 127 (364)
.++++...| +.+++... + ........ .....|.+|++.| +...|.+++..| .|...+ +.++.-..+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 455555544 66666543 2 33222111 2245699999998 333444555555 344332 33332222211
Q ss_pred ------------CCCcEEEEEeecCC-CCEEEEeeCCCcEEEEEcccCcceeeeee-------------------cccCc
Q 040533 128 ------------HDKRVATASWNHWN-GHILTSGSQDKSIINHDVRVSNNVTSRIN-------------------AHTAE 175 (364)
Q Consensus 128 ------------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------------------~~~~~ 175 (364)
....|.++++.|.+ ...+.++...+.|...+- .+.. ...+. .....
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~t-W~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGAS-WEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSB-CEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCC-eEECcCccCCccccccccccccCCCCCCc
Confidence 11257788998744 566666666665544431 1221 11111 11235
Q ss_pred EEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEE-ecc-c--------ccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 176 VCGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRD-H--------RAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 176 v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-~--------~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
+.+|.+.|. ...++.+..++.|...+-. +...+.+.. ... + ...+.++.++|.....+..+. .+-
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~---~~g 254 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN---HCG 254 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE---TTE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc---CCe
Confidence 788999883 3445555544545443311 111111110 000 0 124788999987444444443 334
Q ss_pred EEEEECCCCeEEEEEec--C----CCeEEEEEcCC-ccceeeeccCC-----ccCCCCeEEEeeCCC-Cceeeecc----
Q 040533 245 IKIWNVQKGTCIHSVDT--K----AQICGLEWNRH-HKEILSGHGFS-----SSGDGQKLCLWKYPH-MTKWGELQ---- 307 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~--~----~~v~~~~~~~~-~~~l~~~~~~~-----~~~~~~~i~i~d~~~-~~~~~~~~---- 307 (364)
|...+- .++.-..+.. . ..+..+.++|. ...+.++..-. ....++...+|...+ ++....+.
T Consensus 255 l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 255 IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 544432 2333322221 1 23567778763 33344432100 000122234444433 23332221
Q ss_pred cccc----ceeEEeecCC-CCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 308 HQTS----RILELSQSPD-GLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 308 ~~~~----~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
.... ....++++|. ...|+.++.++.|..- ...++.-..+..+...+.+|+|-
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEEEEEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCeeEEEEe
Confidence 1000 1135778874 3456667666654322 12233333444444567788764
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.28 E-value=2.5 Score=36.93 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=60.0
Q ss_pred CCceEEEEcCCCC-EEEEEecCCcEEEEecCCcc---eeeeee---------cCCCcEEEEEeecC---CCCEEEEeeCC
Q 040533 88 DFPTSISWSQDAK-TLAVGYMASKLQLWDAETSK---LIRNLE---------GHDKRVATASWNHW---NGHILTSGSQD 151 (364)
Q Consensus 88 ~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~~l~~~~~d 151 (364)
.....|+|.|||. .|+++...|.|++++..... .+..+. ........|+|+|. ++.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3468999999996 45555678999999754221 111111 11456789999982 24444443321
Q ss_pred ------------CcEEEEEcccC---------cceeeeee--cccCcEEEEEEcCCCCEEEEEeCC
Q 040533 152 ------------KSIINHDVRVS---------NNVTSRIN--AHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 152 ------------g~i~~~d~~~~---------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
..|.-|.+... ...+.... ........|+|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 13444555321 11111111 122346789999999877766543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=90.67 E-value=5.5 Score=38.51 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=32.5
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777778888899999999999999999998887643
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.83 E-value=6.7 Score=31.56 Aligned_cols=236 Identities=12% Similarity=0.105 Sum_probs=118.5
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
..++-.....++.. |+.|+.|-........+-. .....|..++...+- .++. . ||.|..|-......+..-..-
T Consensus 27 ~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~--~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 27 DAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA--ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp CEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG--GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGG
T ss_pred cEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc--cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCccc
Confidence 33444445566666 9999999865432111111 113357777765432 3344 4 899999976543222111112
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 208 (364)
...|..++.. ....+.-. +|.|..|-.....++-. .......|..++...+. .+.-. ||.|+.|-......
T Consensus 101 ~~~v~~ia~G---~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gq- 171 (282)
T 3qhy_B 101 RSGVDAIAAG---AWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQ- 171 (282)
T ss_dssp SSSEEEEEEE---TTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTST-
T ss_pred CCCeEEEECc---CCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCC-
Confidence 3467777764 34444445 99999998765443211 11233567777765443 22233 79999997544221
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE-EecCCCeEEEEEcCCccceeeeccCCccC
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS-VDTKAQICGLEWNRHHKEILSGHGFSSSG 287 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 287 (364)
+.........|..++.-.. +.++. . ||.|..|=....-.+.. .+....|..++-......++ .
T Consensus 172 --lg~p~~~~~~v~~i~~G~~--hs~al-~---~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al--------~ 235 (282)
T 3qhy_B 172 --TTVPAEAQSGVDDVAGGIF--HSLAL-K---DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL--------K 235 (282)
T ss_dssp --TSCCGGGGSSEEEEEECSS--EEEEE-E---TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE--------E
T ss_pred --CCCceecCCCeEEEEecCC--EEEEE-E---CCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE--------E
Confidence 1111112345666665443 33333 2 78888886543211100 01112344444332222221 2
Q ss_pred CCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
++.++.|-.....++.. ...|.+++-..
T Consensus 236 -~g~v~~wG~n~~gq~~v----~~~v~~iaaG~ 263 (282)
T 3qhy_B 236 -NGKVIAWGSSRTAPSSV----QSGVSSIEAGP 263 (282)
T ss_dssp -TTEEEEESTTCCCCGGG----SSCEEEEEECS
T ss_pred -CCEEEEecCCCCccccC----CCCcEEEEECc
Confidence 77888887655443322 12455555433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.65 E-value=5.8 Score=39.28 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
.+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677788899999999999999999998887644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 364 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-24 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-14 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.003 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-05 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.4 bits (246), Expect = 3e-24
Identities = 67/329 (20%), Positives = 118/329 (35%), Gaps = 72/329 (21%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
W E L +G T + + + + +++WD ET R L+GH
Sbjct: 2 EWIPRPPEKYAL---SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 58
Query: 129 DKRVATASWNHW-----------------------------------------NGHILTS 147
V S++H NG + S
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118
Query: 148 GSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207
S+DK+I +V+ + H V ++ + +G L+AS +D V VW +++
Sbjct: 119 ASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV---VAT 174
Query: 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGG-----------------GTQDGCIKIWNV 250
+C R+HR V+ ++W P S G++D IK+W+V
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234
Query: 251 QKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309
G C+ ++ + G+ ++ K ILS + D L +W Y + L
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSGGKFILSC-----ADDKT-LRVWDYKNKRCMKTLNAH 288
Query: 310 TSRILELSQSPDGLTVVSAAADETLRFWE 338
+ L VV+ + D+T++ WE
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.7 bits (122), Expect = 4e-08
Identities = 16/88 (18%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W G L+ + G D++ + + K + L++WD + + ++ L
Sbjct: 229 IKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSI 154
H+ V + + H + +GS D+++
Sbjct: 287 AHEHFVTSLDF-HKTAPYVVTGSVDQTV 313
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.7 bits (213), Expect = 1e-19
Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 8/156 (5%)
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
+ D + G + +LWD + GH+ + + NG+ +GS D +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATC 250
Query: 155 -INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR 213
+ +T + + + +S G LL +G DD +VWD +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD---ALKADRAGV 307
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
H V L +A+G D +KIWN
Sbjct: 308 LAGHDNRVSCLGVTDDG-MAVATGS--WDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.3 bits (199), Expect = 8e-18
Identities = 51/297 (17%), Positives = 96/297 (32%), Gaps = 52/297 (17%)
Query: 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH 143
G ++ W D++ L KL +WD+ T+ + + V T ++ +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 144 ILTSGSQDKSIIN-------------------------------------------HDVR 160
+ G + I
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA 220
+ T+ HT +V L + + L SG D +WD + C F H +
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCRQTFTGHESD 228
Query: 221 VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280
+ A+ + P N A+G D ++++++ + + ICG+ K SG
Sbjct: 229 INAICFFPNG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SG 282
Query: 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
+ D +W + G L +R+ L + DG+ V + + D L+ W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.5 bits (158), Expect = 2e-12
Identities = 47/283 (16%), Positives = 91/283 (32%), Gaps = 46/283 (16%)
Query: 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179
+ R L GH ++ W + +L S SQD +I D + N I ++ V
Sbjct: 46 RTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTC 103
Query: 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG- 238
++ GN +A GG DN+ +++ + + R + ++ S G
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 239 --------------------------------------GTQDGCIKIWNVQKGTCIHSVD 260
G D K+W+V++G C +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 261 T-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319
++ I + + + +G S +L + + I +S S
Sbjct: 224 GHESDINAICFFPNGNAFATG----SDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 320 PDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
G +++ D W+A +G H + + L V+
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.0 bits (185), Expect = 6e-16
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 29/189 (15%)
Query: 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-------GHDKRVATASWNH 139
D T D K +A G + +++WD+ET L+ L+ GH V + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264
Query: 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRI-----------NAHTAEVCGLKWSNEGNLL 188
+G + SGS D+S+ +++ +NN + H V + + +
Sbjct: 265 -DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY-----QFNVLASGGGTQDG 243
SG D V WD S L + HR +V ++A ++NV A+G G D
Sbjct: 324 LSGSKDRGVLFWD---KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG--DC 378
Query: 244 CIKIWNVQK 252
+IW +K
Sbjct: 379 KARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.7 bits (179), Expect = 4e-15
Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 22/291 (7%)
Query: 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124
L ++ E D + S+ +S D K LA G +++WD E K++
Sbjct: 99 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 158
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
++ + +G L SGS D+++ D+R + +
Sbjct: 159 -LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGD 216
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCL----HRFRDHRAAVKALAWCPYQFNVLASGGGT 240
G +A+G D V VWD + L H+ +V ++ + +V++ G+
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS---GS 273
Query: 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFS-------SSGDGQKLC 293
D +K+WN+Q T HK+ + + S + +
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 294 LWKYPHMTKWGELQHQTSRILEL------SQSPDGLTVVSAAADETLRFWE 338
W LQ + ++ + S P+ + + D R W+
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 2e-12
Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 19/177 (10%)
Query: 137 WNHWNGHILTSGSQDKSIINHDVR------VSNNVTSRINAHTAEVCGLKWSNEGNLLAS 190
+ +G + +GS D+++ D ++ H V + ++ +G + S
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 191 GGDDNLVHVWDHSKMS---------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241
G D V +W+ + S C + H+ V ++A + SG +
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGS--K 328
Query: 242 DGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297
D + W+ + G + + + + + + F++ K +WKY
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.5 bits (150), Expect = 2e-11
Identities = 43/314 (13%), Positives = 95/314 (30%), Gaps = 39/314 (12%)
Query: 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWN- 138
L K + +S D + LA G Q++ L+ L
Sbjct: 55 LHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113
Query: 139 ----------------HWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182
+G L +G++D+ I D+ V +
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173
Query: 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242
+ L++ GD + + S A P +A+G D
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA-----VSPGDGKYIAAGS--LD 226
Query: 243 GCIKIWNVQKGTCIHSVDT--------KAQICGLEWNRHHKEILSG------HGFSSSGD 288
+++W+ + G + +D+ K + + + R + ++SG ++
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 286
Query: 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF 348
K T +L ++ + + ++S + D + FW+ +
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346
Query: 349 VSHLDGLLSLKVSP 362
H + ++S+ V+
Sbjct: 347 QGHRNSVISVAVAN 360
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.4 bits (142), Expect = 2e-10
Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 18/139 (12%)
Query: 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW--- 140
TG D S+ +++D +++ G + ++LW+ + + + + + ++
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310
Query: 141 --------NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN------EGN 186
N + SGS+D+ ++ D + S N + H V + +N E N
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369
Query: 187 LLASGGDDNLVHVWDHSKM 205
+ A+G D +W + K+
Sbjct: 370 VFATGSGDCKARIWKYKKI 388
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.8 bits (174), Expect = 2e-14
Identities = 29/278 (10%), Positives = 81/278 (29%), Gaps = 18/278 (6%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSG 148
+ +W++D +A+ ++ +++ +K + L+ H+ +V W + + + +
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTC 69
Query: 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
D++ ++ + + + G + + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-RVISICYFEQEN 128
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL 268
+ + + N + G+ D +I++ +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 269 EWNRHHKEILSGHGFSSS-------------GDGQKLCLWKYPHMTKWGELQHQTSRILE 315
+ E S G+ +CL L +T +L
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 316 LSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD 353
++ + ++V+A D + +G F LD
Sbjct: 249 VTFITES-SLVAAGHDCFPVLFTYDSAAGKLSFGGRLD 285
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 33/316 (10%), Positives = 84/316 (26%), Gaps = 29/316 (9%)
Query: 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125
E++++++ + ++ ++ + T + W+ D+ + +W + L
Sbjct: 30 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIIN----HDVRVSNNVTSRINAHTAEVCGLKW 181
A + +I+ + V L W
Sbjct: 90 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 149
Query: 182 SNEGNLLASGGDDNLVHVWD---------------HSKMSSSKCLHRFRDHRAAVKALAW 226
LLA+G D ++ SKM + + V + +
Sbjct: 150 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 209
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286
V D + + + K + ++ ++ ++ ++
Sbjct: 210 SANGSRVAWVS---HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV------AA 260
Query: 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG 346
G L+ Y + + SQ D+ + +G+G
Sbjct: 261 GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS-AAAGAG 319
Query: 347 DFVSHLDGLLSLKVSP 362
H + + + V
Sbjct: 320 LDSLHKNSVSQISVLS 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.8 bits (83), Expect = 0.003
Identities = 17/171 (9%), Positives = 49/171 (28%), Gaps = 12/171 (7%)
Query: 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH 143
+ + + +S + +A S + L DA+ + L + ++
Sbjct: 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF-ITESS 256
Query: 144 ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203
++ +G ++ + ++ D +
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLS--FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314
Query: 204 KMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCIKIWNVQ 251
+ H+ +V ++ + + + G DG + IW+V+
Sbjct: 315 AAGAG----LDSLHKNSVSQISVLSGGKAKCSQFCTTG--MDGGMSIWDVR 359
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (147), Expect = 4e-11
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
D + + G +++WD ET + L+GH RV ++G + SGS D SI
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV---YSLQFDGIHVVSGSLDTSI 199
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF 214
DV N + + + + N+L SG D+ V +WD + L
Sbjct: 200 RVWDVETGNCIHTLTGHQSLTSG---MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256
Query: 215 RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261
H++AV L + + DG +K+W+++ G I ++ T
Sbjct: 257 NKHQSAVTCLQFNKNFV-----ITSSDDGTVKLWDLKTGEFIRNLVT 298
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 8e-11
Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 14/165 (8%)
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
D + G + + +++WD ET I L GH S +IL SG+ D ++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT---SGMELKDNILVSGNADSTV 239
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF 214
D++ + + + + N + + DD V +WD + + + +
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD---LKTGEFIRNL 296
Query: 215 R-----DHRAAVKALAWCPYQFNVLASGG--GTQDGCIKIWNVQK 252
V + + V A G GT++ + + +
Sbjct: 297 VTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 3e-10
Identities = 48/268 (17%), Positives = 82/268 (30%), Gaps = 26/268 (9%)
Query: 70 WKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129
W++ + K+LK G DD + + G + L++W A T K +R L GH
Sbjct: 1 WRRGELKSPKVLK--GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189
V ++ + V + + +
Sbjct: 58 GGVWSSQMRDNIII------SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
SG D + VWD L + Y + SG D +K+W+
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAA------VRCVQYDGRRVVSGA--YDFMVKVWD 163
Query: 250 VQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309
+ TC+H++ NR + G S + +W L
Sbjct: 164 PETETCLHTLQG-------HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 216
Query: 310 TSRILELSQSPDGLTVVSAAADETLRFW 337
S + + +VS AD T++ W
Sbjct: 217 QSLTSGMELKDN--ILVSGNADSTVKIW 242
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 2e-07
Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 12/165 (7%)
Query: 45 DYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV 104
+ + ++++ +L + +W E G T + L
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH----TLTGHQSLTSGMELKDNILVS 232
Query: 105 GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR---- 160
G S +++WD +T + ++ L+G +K + + +N + + + S D ++ D++
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292
Query: 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL----VHVWD 201
+ N VT V ++ SN + A G + + V D
Sbjct: 293 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 61.0 bits (146), Expect = 4e-11
Identities = 35/297 (11%), Positives = 72/297 (24%), Gaps = 25/297 (8%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYMASKLQLWDAETSKLIRNL 125
L + E V K++ + P + + + L D T + + +
Sbjct: 13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 126 EGHDKRVATASWN----HWNGHILTSGSQDKSIINHDVRVSNNVTSRINA---------- 171
+ S +G L + V + +A
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVWD------HSKMSSSKCLHRFRDHRAAVKALA 225
++ L W+ +G+ L G D V + + S + + AV
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL---EWNRHHKEILSGHG 282
+ G ++T + ++
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 283 FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ G L + + ++ S DG TV A L ++A
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 7/135 (5%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD 151
+ +D + L D ET ++ N +
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF--STAVNPAKTRAFGAY 259
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL 211
+ + D+ N R+ + S +G+ + GG + +D + +
Sbjct: 260 NVLESFDLE-KNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYD---AETLEKK 314
Query: 212 HRFRDHRAAVKALAW 226
+ A +LA
Sbjct: 315 GQVDLPGNASMSLAS 329
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 45 DYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV 104
D + A L + E K + + S++ S D T+ +
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHS---YYSVNVSTDGSTVWL 296
Query: 105 GYMASKLQLWDAETSKLIRNLE 126
G L +DAET + ++
Sbjct: 297 GGALGDLAAYDAETLEKKGQVD 318
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 8e-04
Identities = 14/165 (8%), Positives = 33/165 (20%), Gaps = 18/165 (10%)
Query: 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQDG 243
+ + + + + V D D P A+
Sbjct: 2 DYILAPARPDKLVVID---TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SE 56
Query: 244 CIKIWNVQKGTCIHSVDTKAQIC------GLEWNRHHKEILSGHGFSS-----SGDGQKL 292
+ ++ G + +D G + K +
Sbjct: 57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 293 CLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
+ +I L+ + DG + D +
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.3 bits (144), Expect = 8e-11
Identities = 26/249 (10%), Positives = 63/249 (25%), Gaps = 2/249 (0%)
Query: 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGS 149
+ + + + + + H + A +G+ SG
Sbjct: 20 AVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYCASGD 77
Query: 150 QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209
++ D + ++ + + + + + +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLE 269
A+ ++ + P + + SG I K TK
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329
+G + + + + L+ SPDG + SA+
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257
Query: 330 ADETLRFWE 338
AD+T++ W
Sbjct: 258 ADKTIKIWN 266
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231
H+ V GL WS +G +AS D + +W+ +++ K +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWN---VATLKVEKTIPVGTRIEDQQLGIIWTK 293
Query: 232 NVLASGGGTQDGCIKIWN 249
L S +G I N
Sbjct: 294 QALVSISA--NGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 33/284 (11%), Positives = 75/284 (26%), Gaps = 4/284 (1%)
Query: 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115
+ + G +Y + ++ T T S A G + +++WD
Sbjct: 29 GDKIQYCNGTSVYTVPVGSLTDTEIY--TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86
Query: 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE 175
+ I + + + + V + + TS N
Sbjct: 87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146
Query: 176 VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
+ + + + + K F +H V ++ + P A
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF-A 205
Query: 236 SGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295
S GG + T + D+ + G +S+ + + +W
Sbjct: 206 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 265
Query: 296 KYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWE 338
+ + +L +VS +A+ + F
Sbjct: 266 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.9 bits (91), Expect = 3e-04
Identities = 11/66 (16%), Positives = 20/66 (30%)
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196
+G + S S DK+I +V + E L L S +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 197 VHVWDH 202
++ +
Sbjct: 305 INFVNP 310
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.3 bits (144), Expect = 1e-10
Identities = 27/287 (9%), Positives = 68/287 (23%), Gaps = 19/287 (6%)
Query: 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123
G L ++ G+ +K ++ ++ K V ++ D ET K
Sbjct: 65 GDFLGIYDYRTGKAEK---FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIIN-------HDVRVSNNVTSRINAHTAEV 176
+ + + + + I + H + +
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181
Query: 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC----LHRFRDHRAAVKALAWCPYQFN 232
+ + L +L D ++ S + P +
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-RSM 240
Query: 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292
+G + K + + + + + L
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 293 CLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ K ++ + + +L S D TV+ D + +
Sbjct: 301 LKYD----VKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 17/149 (11%), Positives = 39/149 (26%), Gaps = 13/149 (8%)
Query: 70 WKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK-------LQLWDAETSKLI 122
V K + P + T G D ++I
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182
LE + + + ++ +DV+ T ++ + L+ S
Sbjct: 270 IPLESSILIY-SVPVHGEFAAYYQGAPEKGVLLKYDVK-----TRKVTEVKNNLTDLRLS 323
Query: 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCL 211
+ + DD ++ + K + +
Sbjct: 324 ADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 22/233 (9%), Positives = 55/233 (23%), Gaps = 22/233 (9%)
Query: 41 NLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK 100
+ S + +G G + + E +K+ T E+ + ++ D+K
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191
Query: 101 TLAVGYMASKLQLWDAET-------SKLIRNLEGHDKRVATASWNH-----WNGHILTSG 148
L S D + G +
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
+S + + + + + ++ +D
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---- 307
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261
+ + + + L + DG I + ++K +V+T
Sbjct: 308 ---RKVTEVKNNLTDLRLSA-DRKTVMVRKD--DGKIYTFPLEKPEDERTVET 354
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.8 bits (83), Expect = 0.003
Identities = 11/205 (5%), Positives = 42/205 (20%), Gaps = 5/205 (2%)
Query: 135 ASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194
++ +G ++ S+ ++ I VS ++ + ++ + + G
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFI---QDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254
+ + + + V ++
Sbjct: 64 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123
Query: 255 CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314
HG + Q + ++ + +
Sbjct: 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DY 182
Query: 315 ELSQSPDGLTVVSAAADETLRFWEA 339
+ D + + +
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDR 207
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 1e-10
Identities = 9/168 (5%), Positives = 40/168 (23%)
Query: 170 NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY 229
A + +K +LL D + V+ + + L + ++ + +
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 230 QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289
+ G + + + ++++
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 290 QKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
K + + + + ++ + ++++
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 2e-10
Identities = 26/270 (9%), Positives = 69/270 (25%), Gaps = 17/270 (6%)
Query: 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE---GHDKRVATASWNHWNGH 143
D+ + I L + L ++ + +L + + ++
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 144 ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203
+ G+ I+ D+ S + + N + L + D L+ V D
Sbjct: 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130
Query: 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263
+ + N G + ++ + + + ++
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190
Query: 264 QICGLEWNRHHKEILSGHGFSSSGDGQ--------------KLCLWKYPHMTKWGELQHQ 309
+ + SS DG+ + + + +
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250
Query: 310 TSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ + SP + +A +D + W
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH 143
T SI +S K L + W+ +T K I+N ++ + +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI--ACSDN 305
Query: 144 ILTSGSQDKSIINHDV 159
IL + D + +
Sbjct: 306 ILCLATSDDTFKTNAA 321
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (82), Expect = 0.004
Identities = 19/165 (11%), Positives = 40/165 (24%), Gaps = 18/165 (10%)
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE---VCGLKWSNEGNLLASGGD 193
N L G + + + + + I + E A
Sbjct: 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214
Query: 194 DNLVHVWD------------HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241
D V V + + + V ++ + P + +G
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS--- 271
Query: 242 DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286
DG I WN+Q I + + ++ + +
Sbjct: 272 DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTF 316
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 2e-10
Identities = 51/275 (18%), Positives = 95/275 (34%), Gaps = 17/275 (6%)
Query: 67 LYLWKQENGEVQK---LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123
+ +W + + L D++ S D TL VG AS L +WD
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183
E A + + I + + + HT + SN
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 184 EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243
+G L +GG DN V WD + + D + + +L +CP + G +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREG----RQLQQHDFTSQIFSLGYCPTGEWL---AVGMESS 246
Query: 244 CIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
+++ +V K ++ + L++ K +S D L W+ P+
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST-----GKDNL-LNAWRTPYGASI 300
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
+ + +S +L S D +V+ + D+ +E
Sbjct: 301 FQSKE-SSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 9e-09
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231
H + V LK++ G S G DNL++ W + + + ++V +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWR---TPYGASIFQSK-ESSSVLSCDISVDD- 318
Query: 232 NVLASGGGTQDGCIKIWNV 250
+ +G G D ++ V
Sbjct: 319 KYIVTGSG--DKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 39/290 (13%), Positives = 89/290 (30%), Gaps = 22/290 (7%)
Query: 79 KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-----LIRNLEGHDKRVA 133
+ + + +++ S + + G +++WD + D +
Sbjct: 43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101
Query: 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193
+ +G L G + ++ D+ +A C + + +
Sbjct: 102 SCKL-LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160
Query: 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253
+ + + A+ ++ + G D ++ W++++G
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT-----GGLDNTVRSWDLREG 215
Query: 254 TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI 313
+ D +QI L + + + G S+ + + +L S +
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-------VEVLHVNKPDKYQLHLHESCV 268
Query: 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS-HLDGLLSLKVSP 362
L L + G VS D L W P G+ F S +LS +S
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRT--PYGASIFQSKESSSVLSCDISV 316
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 4e-05
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILT 146
+ S+ ++ K + L W I V + + + +
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIV 322
Query: 147 SGSQDKSIINHDV 159
+GS DK ++V
Sbjct: 323 TGSGDKKATVYEV 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-10
Identities = 43/291 (14%), Positives = 93/291 (31%), Gaps = 63/291 (21%)
Query: 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW------------- 140
D + + G + +++WD T + R L GH V ++
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79
Query: 141 ------------------------NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV 176
N ++ + S+D+SI D+ ++T R
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139
Query: 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
+ + S D + VW+ S+ + + H+ + L +
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWN---TSTCEFVRTLNGHKRGIACLQYRDRLVVS--- 193
Query: 237 GGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296
G+ D I++W+++ G C+ ++ ++ + + S K+ +W
Sbjct: 194 --GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-------IVSGAYDGKIKVWD 244
Query: 297 YPHMTKWGE---------LQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
L + R+ L D +VS++ D+T+ W+
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (108), Expect = 2e-06
Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 13/129 (10%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
T + + G + ++LWD E +R LEGH++ +
Sbjct: 170 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRCIRF 226
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTS--------RINAHTAEVCGLKWSNEGNLLASGG 192
+ + SG+ D I D+ + + + + H+ V L++ + S
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSS 284
Query: 193 DDNLVHVWD 201
D+ + +WD
Sbjct: 285 HDDTILIWD 293
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 55.1 bits (131), Expect = 4e-09
Identities = 38/304 (12%), Positives = 79/304 (25%), Gaps = 34/304 (11%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYMASKLQLWDAETSKLIRNL 125
L++ + V K + P + + D +T V + D +T K +
Sbjct: 20 LHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78
Query: 126 EGHDKRVATASWNHW-----NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE----- 175
+ +G + + +N V +
Sbjct: 79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 138
Query: 176 --------VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
V ++ +++G+L +G D + V + + R +A L +
Sbjct: 139 RTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198
Query: 228 PYQ-----FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG 282
P+Q F++L + +D SVD K + E+
Sbjct: 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258
Query: 283 FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ-------SPDGLTVVSAAADETLR 335
S + K+ Q + + L G + L
Sbjct: 259 RSP--KDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA 316
Query: 336 FWEA 339
+
Sbjct: 317 VFNP 320
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 6e-06
Identities = 11/109 (10%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
Query: 28 FDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGED 87
D + + Y + ++ + L + + ++ K + D
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL---D 291
Query: 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136
+++ + L +G + L +++ +T + ++N++ ++T +
Sbjct: 292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTT 340
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 18/168 (10%), Positives = 42/168 (25%), Gaps = 15/168 (8%)
Query: 178 GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQFNVLAS 236
G + N +HV D ++S + P
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVD---VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVL 57
Query: 237 GGGTQDGCIKIWNVQKGTCIHSV-------DTKAQICGLEWNRHHKEILSGHGFSSSGDG 289
G I ++ + + + KE+ + + +
Sbjct: 58 NNH--YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 290 QKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
+ K P + + ++ + P + ++ AA D +L
Sbjct: 116 --HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 9e-09
Identities = 21/210 (10%), Positives = 50/210 (23%), Gaps = 4/210 (1%)
Query: 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKS 153
+ + G ++++D+ K + L GHD V + H G +++ +
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTV 76
Query: 154 IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR 213
+ + + T + + +G DN +HVW + +
Sbjct: 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK---LPKESSVPD 133
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
+ + G + S D + + +
Sbjct: 134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC 193
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
+ S
Sbjct: 194 LYILSGHTDRIYSTIYDHERKRCISASMDT 223
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 3e-04
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187
H ++ + + + +IL SGS + +++R V + I ++ + + + L
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-L 337
Query: 188 LASGGDDNLVHVWD 201
+A+ D +
Sbjct: 338 VAAVEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.003
Identities = 10/113 (8%), Positives = 37/113 (32%), Gaps = 8/113 (7%)
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196
+ + +N+ + + + H + + + + G +N
Sbjct: 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 304
Query: 197 VHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
++++ + S K +H + ++ + ++A+ +DG +
Sbjct: 305 FNIYN---LRSGKLVHANILKDADQIWSVNFKGK--TLVAAVE--KDGQSFLE 350
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.4 bits (127), Expect = 1e-08
Identities = 23/287 (8%), Positives = 61/287 (21%), Gaps = 40/287 (13%)
Query: 67 LYLWKQENGEVQKLLKV-----TGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSK 120
+ ++ +++ I + L + +S +
Sbjct: 98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS 157
Query: 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSII-----NHDVRVSNNVTSRINAHTAE 175
+ + + GS S+ A
Sbjct: 158 DDQLTKSAS----CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS 213
Query: 176 VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
+ + G L+ + L + + + R A + L
Sbjct: 214 SQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273
Query: 236 SGG-------------GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG 282
+ G + + +
Sbjct: 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN---- 329
Query: 283 FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329
+++S + L ++ + Q +EL + P+ L+V + A
Sbjct: 330 YANSAGTEVLDIY----DAASDQDQ----SSVELDKGPESLSVQNEA 368
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 4e-08
Identities = 37/264 (14%), Positives = 63/264 (23%), Gaps = 17/264 (6%)
Query: 89 FPTSISWSQDAKTLAVGYMASK-LQLWDAETSKL--IRNLEGHDKRVATA-SWN-HWNGH 143
F T +S+ +A S ++ D SK+ + GH V T ++
Sbjct: 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 144 ILTSGSQDKSIINHDVRVSNNVT-------SRINAHTAEVCGLKWSNEGNLLASGGD--D 194
L SG + +I S + + W EG L G+ D
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254
N +S + A + + G K +
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACH---LKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
Query: 255 CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314
K + S + + Q +
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255
Query: 315 ELSQSPDGLTVVSAAADETLRFWE 338
D + AD T+R W+
Sbjct: 256 FALSWLDSQKFATVGADATIRVWD 279
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (104), Expect = 7e-06
Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 7/117 (5%)
Query: 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195
S + I + S + + A+ G D
Sbjct: 214 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA 273
Query: 196 LVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250
+ VWD +++SKC+ ++ + + + + S DG + + +
Sbjct: 274 TIRVWD---VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--LDGTLNFYEL 325
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (117), Expect = 2e-07
Identities = 31/310 (10%), Positives = 75/310 (24%), Gaps = 44/310 (14%)
Query: 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV----------GYMASKLQLWD 115
+ ++ E G V ++ F + + D +A G ++++D
Sbjct: 29 QQFVIDGEAGRVIGMIDG----GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 84
Query: 116 AETSKLIRNLEGHDKRVATA-------SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR 168
T ++E D S +L +
Sbjct: 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144
Query: 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP 228
++ + + G V + + + A+
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 204
Query: 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICG---LEWNRHHKEILSGHG--- 282
++ T G I ++ G +A W + ++ H
Sbjct: 205 KAGRLVWP---TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 261
Query: 283 -----------FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG--LTVVSAA 329
+ + + + + + + I ++ S D L +
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALST 320
Query: 330 ADETLRFWEA 339
D+TL +A
Sbjct: 321 GDKTLYIHDA 330
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 49 NMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL--AVGY 106
++ R+ + + + GE ++ E SI+ SQD K L A+
Sbjct: 264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE---IDSINVSQDEKPLLYALST 320
Query: 107 MASKLQLWDAETSKLIRNLEGHDK 130
L + DAE+ + +R++
Sbjct: 321 GDKTLYIHDAESGEELRSVNQLGH 344
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 7e-07
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193
A+ ++ +GS D +I + V+ + +NAH V L W L S G
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA 277
Query: 194 DNLVHVWD 201
D + W+
Sbjct: 278 DACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 9e-07
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196
G IL Q + + + + I+ AE + E +L+A+G D
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250
+ ++ + K + H+ V L W + L S G D CIK WNV
Sbjct: 239 IFIYSVKR--PMKIIKALNAHKDGVNNLLWETP--STLVSSGA--DACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (87), Expect = 9e-04
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS 258
+ L H + AL P L SG DG I W+ HS
Sbjct: 4 EVLKTISGHNKGITALTVNP-----LISGS--YDGRIMEWSSSSMHQDHS 46
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.002
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 12/155 (7%)
Query: 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179
++++ + GH+K + + N L SGS D I+ +S H+ + L
Sbjct: 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWS------SSSMHQDHSNLIVSL 52
Query: 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239
S +S D+ + V +K + A+ +L S G
Sbjct: 53 DNSK-AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111
Query: 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH 274
+++ + + + +
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF 146
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.5 bits (108), Expect = 2e-06
Identities = 16/133 (12%), Positives = 33/133 (24%), Gaps = 4/133 (3%)
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQ 230
H + L S +G L S + ++ WD +S+ F D H + +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWD---ISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290
S + + + +Q GL + ++ +
Sbjct: 68 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127
Query: 291 KLCLWKYPHMTKW 303
Sbjct: 128 GKLTEVPISYNSS 140
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.7 bits (106), Expect = 4e-06
Identities = 23/190 (12%), Positives = 53/190 (27%), Gaps = 2/190 (1%)
Query: 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179
+ + GH+K + S + +G L S + I + D+ + + H + G+
Sbjct: 3 SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239
K +++G+L DD+ + V + LA +A+
Sbjct: 62 KTTSKGDLFTVSWDDH-LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299
+ +S ++ S ++ +P
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 300 MTKWGELQHQ 309
+
Sbjct: 181 EITSVAFSNN 190
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.4 bits (105), Expect = 5e-06
Identities = 37/278 (13%), Positives = 79/278 (28%), Gaps = 15/278 (5%)
Query: 75 GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL-EGHDKRVA 133
G + ++ G + T++S S D KTL + WD T R + H +
Sbjct: 2 GSIDQVRY--GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59
Query: 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193
S ++ ++ + N +++ GL S +G++ +
Sbjct: 60 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119
Query: 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253
++ K + ++ AL+ V G
Sbjct: 120 KHIAIYSHG------KLTEVPISYNSSCVALSNDKQFVAV------GGQDSKVHVYKLSG 167
Query: 254 TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI 313
+ V T + S + + T+++
Sbjct: 168 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 227
Query: 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH 351
+S SPD + + + + D ++ W PS +
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 265
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 1e-05
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196
N+ + T S+ + T+ HTA+V + WS + LA+G DN
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247
Query: 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250
V VW+ +K S + + ++V ++ W + S G QD IK WNV
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT--IVSAG--QDSNIKFWNV 297
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 3e-06
Identities = 29/302 (9%), Positives = 65/302 (21%), Gaps = 58/302 (19%)
Query: 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE------------GHDKRVATASWNHWN 141
S S L++WD + + H + + +
Sbjct: 19 SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78
Query: 142 GHILTSGSQDKSIINHDVRVSNNVTS---------RINAHTAEVCGLKWSNEGN-----L 187
++ + S ++ + + + + LKW +
Sbjct: 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 138
Query: 188 LASGGDDNLVHVWD---------------HSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232
L + ++W + + ++
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL- 197
Query: 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292
+A+G I + + +
Sbjct: 198 -IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 256
Query: 293 CLWKYPHMTKW---------------GELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
C+ Y +S ++ LS + G T+ SA D LRFW
Sbjct: 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316
Query: 338 EA 339
+
Sbjct: 317 DV 318
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 29/247 (11%), Positives = 73/247 (29%), Gaps = 41/247 (16%)
Query: 114 WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI-----INHDVRVSNNVTSR 168
E + + + + + ++ +G + ++ +
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHS 226
Query: 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH-------------SKMSSSKCLHRFR 215
+ ++ + +K+S +G+LLA D N SS+
Sbjct: 227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF 286
Query: 216 DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275
H + V +L++ + DG ++ W+V+ I +++ H
Sbjct: 287 AHSSWVMSLSFNDSGETLC---SAGWDGKLRFWDVKTKERITTLNM-----------HCD 332
Query: 276 EI-LSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETL 334
+I + + G L + + R + + L D ++
Sbjct: 333 DIEIEEDILAVDEHGDSLAEPGVFDVKFL----KKGWRSGMGADLNESL--CCVCLDRSI 386
Query: 335 RFWEAFG 341
R++ G
Sbjct: 387 RWFREAG 393
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 16/144 (11%), Positives = 44/144 (30%), Gaps = 13/144 (9%)
Query: 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLE 269
+ + H A + +++ C + S G DG +K+W+ + + D +
Sbjct: 6 TANAGKAHDADIFSVSACN---SFTVSCSG--DGYLKVWDNKLLDNENPKDKSYSHFVHK 60
Query: 270 WNRHHKEILS--------GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321
HH ++L +++ L ++ + ++ + +L+
Sbjct: 61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120
Query: 322 GLTVVSAAADETLRFWEAFGPSGS 345
+ A +
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDV 144
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 7e-05
Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 29/194 (14%)
Query: 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA---- 133
+ F TS+ S+ +A G+ +Q+ + T + + N E +
Sbjct: 175 GTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 134 -TASWNHWNGHILTSGSQDKSIINHDV---------------RVSNNVTSRINAHTAEVC 177
+ G +L S + S+ + AH++ V
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 178 GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237
L +++ G L S G D + WD + + + + H ++ +
Sbjct: 294 SLSFNDSGETLCSAGWDGKLRFWD---VKTKERITTLNMHCDDIEIEEDI-----LAVDE 345
Query: 238 GGTQDGCIKIWNVQ 251
G +++V+
Sbjct: 346 HGDSLAEPGVFDVK 359
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 28/185 (15%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV------------TSRINAH 172
+ HD + + S S S D + D ++ +N S ++
Sbjct: 10 GKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 173 TAEVCGLKWSNEGNLLASGGDDNLVHVWD-------HSKMSSSKCLHRFRDHRAAVKALA 225
+ + E L+A+ + + + L + + AL
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 226 WCP----YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281
W + L + G IW + T LE + ++
Sbjct: 127 WGASNDRLLSHRLVATD--VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 282 GFSSS 286
F++S
Sbjct: 185 QFATS 189
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (82), Expect = 0.004
Identities = 18/140 (12%), Positives = 35/140 (25%), Gaps = 19/140 (13%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ Q L + S+S++ +TL KL+ WD +T + I L
Sbjct: 269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328
Query: 127 GHDKRVATASWN---HWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183
H + +G L + ++
Sbjct: 329 MHCDDIEIEEDILAVDEHGDSLAEPG----------------VFDVKFLKKGWRSGMGAD 372
Query: 184 EGNLLASGGDDNLVHVWDHS 203
L D + + +
Sbjct: 373 LNESLCCVCLDRSIRWFREA 392
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 43.3 bits (100), Expect = 2e-05
Identities = 28/305 (9%), Positives = 76/305 (24%), Gaps = 35/305 (11%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYMASKLQLWDAETSKLIRNL 125
+ + + +V + V P S D + V ++ + + D T+ +I +
Sbjct: 14 ISVIDVTSNKVTATIPVGSN---PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV 70
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185
A +T+ + + + T + +
Sbjct: 71 PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGK-- 128
Query: 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
+ +A + ++ + + GT+
Sbjct: 129 -------------KLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVA 175
Query: 246 KIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305
++ ++ +E + + + K T +
Sbjct: 176 NFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235
Query: 306 LQHQT---SRILELSQSPDGLTV-VSAAADETLRFWEA------------FGPSGSGDFV 349
+ + ++ +PDG V V+ + T+ + P SG F+
Sbjct: 236 ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYASGQFI 295
Query: 350 SHLDG 354
+
Sbjct: 296 GSIPV 300
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 39.9 bits (93), Expect = 3e-04
Identities = 33/214 (15%), Positives = 58/214 (27%), Gaps = 26/214 (12%)
Query: 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW-----N 141
D + K S+ + A T + R V +
Sbjct: 175 DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR------DWVVVFNVERIAAAVKA 228
Query: 142 GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201
G+ T G ++ D R + T I + +A+G V V
Sbjct: 229 GNFKTIGDSKVPVV--DGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIA 286
Query: 202 HSKMSSS-KCLHRFRDHRAAVKALAWCPY------QFNVLASGGGTQDGCIKIWNVQKGT 254
K+ + RD A L P + N + D + WN+
Sbjct: 287 IDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI--DSQVCKWNIADAI 344
Query: 255 CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGD 288
++ D I + ++ GH +S +
Sbjct: 345 KHYNGDRVNYIRQK-LDVQYQP---GHNHASLTE 374
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 36.7 bits (84), Expect = 0.004
Identities = 27/285 (9%), Positives = 67/285 (23%), Gaps = 15/285 (5%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYMASKLQLWDAETSKLIRNLEG 127
LW +E V ++ + TS + K Y + + D ET + +
Sbjct: 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187
++ S + +V+ + + ++ +
Sbjct: 150 RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI-LLVDYTDLNNLKTTEISAERF 208
Query: 188 LASGG---DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
L GG +++ + A P+ T
Sbjct: 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV 268
Query: 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHH--KEILSGHGFSSSGDGQKLCLWKYPHMTK 302
++ + W + G F + +Y ++
Sbjct: 269 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN-----SQYLYVDA 323
Query: 303 WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD 347
+ + S + D + +D + +G +
Sbjct: 324 TLNPEAEISGSV---AVFDIKAMTGDGSDPEFKTLPIAEWAGITE 365
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 364 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.87 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.78 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.65 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.64 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.57 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.57 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.53 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.51 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.49 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.43 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.43 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.42 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.4 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.37 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.36 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.29 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.21 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.14 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.12 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.1 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.96 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.94 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.93 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.88 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.58 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.57 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.51 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.35 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.29 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.24 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.04 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.96 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.92 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.86 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.74 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.73 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.63 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.52 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.51 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.48 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.4 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.19 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.97 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.96 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.86 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.85 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.68 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 96.58 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.54 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.46 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.27 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.15 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.98 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.58 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 92.09 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 90.98 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.07 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 84.54 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.06 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-44 Score=304.53 Aligned_cols=277 Identities=20% Similarity=0.254 Sum_probs=239.8
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCcee---eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--c
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQ---KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--K 120 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~ 120 (364)
.+.+++|++++ +++.+.||.|+|||+.++... ......+|.+.|.+++|+|++++|++|+.||.|++||+... +
T Consensus 53 ~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 132 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred cEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccc
Confidence 47888999864 666667999999999876432 23344588999999999999999999999999999998744 5
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
....+..|...+.+++|+| ++.++++++.|+.|++|++.+++. ......|...|.+++|++++..+++++.|+.+++|
T Consensus 133 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~ 210 (337)
T d1gxra_ 133 IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccccccccccccccccc-cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 5667788999999999999 999999999999999999987664 66677899999999999999999999999999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeee
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
|+++.. .+..+ .+...|.+++|+|++. ++++++ .|+.+++||+++++......+...|.+++|+|++++++++
T Consensus 211 d~~~~~---~~~~~-~~~~~i~~l~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~ 283 (337)
T d1gxra_ 211 DLREGR---QLQQH-DFTSQIFSLGYCPTGE-WLAVGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283 (337)
T ss_dssp ETTTTE---EEEEE-ECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccce---eeccc-ccccceEEEEEccccc-ccceec--cccccccccccccccccccccccccceEEECCCCCEEEEE
Confidence 987653 34444 4788999999999985 555655 7999999999999888777778899999999999999988
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
.. |+.|++||+.+++.+..+. |...|++++|+|++++|++|+.||+|+|||+
T Consensus 284 s~------Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 284 GK------DNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ET------TSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred eC------CCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 54 9999999999999987765 6789999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.9e-43 Score=295.12 Aligned_cols=277 Identities=16% Similarity=0.252 Sum_probs=232.0
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee--ee
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI--RN 124 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~ 124 (364)
...++++|+ +.++.+.++.|.+||+.+++....+ .+|...|++++|+|+|++||+|+.||+|+|||+.+++.. ..
T Consensus 20 ~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~--~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~ 97 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIY--TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT 97 (311)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred eEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEE--cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccc
Confidence 445677774 4677778899999999988766554 489999999999999999999999999999999887654 55
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE-EEEEeCCCeEEEEe
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL-LASGGDDNLVHVWD 201 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd 201 (364)
+..|..+|.+++|+| ++++|++++. +..+++|++++++. ...+.+|...|.+++|+|++++ |++|+.|+.|++||
T Consensus 98 ~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d 175 (311)
T d1nr0a1 98 IPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 175 (311)
T ss_dssp EECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred cccccCccccccccc-cccccccccccccccccccccccccc-cccccccccccccccccccceeeeccccccccccccc
Confidence 778999999999999 8999988875 45699999987764 5677889999999999998874 88899999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--------CCCeEEEEEcCC
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--------KAQICGLEWNRH 273 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------~~~v~~~~~~~~ 273 (364)
+++. +....+..|..+|.++.|+|++. ++++++ .|+.|++||+.++.....+.. ...|.+++|+|+
T Consensus 176 ~~~~---~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~ 249 (311)
T d1nr0a1 176 GPPF---KFKSTFGEHTKFVHSVRYNPDGS-LFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 249 (311)
T ss_dssp TTTB---EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred cccc---ccccccccccccccccccCcccc-cccccc--ccccccccccccccccccccccccccccccccccccccCCC
Confidence 8764 45778888999999999999985 556655 799999999999988877642 357999999999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc-ceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS-RILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+++|++|.. |+.|++||+++++++.++..|.. ....+.+.+++.+|++++.||.|++||++
T Consensus 250 ~~~l~tgs~------Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 250 GTKIASASA------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSEEEEEET------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCEEEEEeC------CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 999998854 99999999999999998876643 22333444456689999999999999963
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.2e-42 Score=288.02 Aligned_cols=277 Identities=26% Similarity=0.452 Sum_probs=249.0
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++||+.+++... .+.+|...|.+++|+|++.+++++..++.+.+|+....+....
T Consensus 19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 96 (317)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCCCcEEEEeeecccccccccccccccccccccccccccc
Confidence 37888898853 6677889999999999988654 4558999999999999999999999999999999999998888
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+..|...+.++.|+| +++.+++++.|+.+++||++++.. ...+..|...+.+++|+|++++|++++.|+.|++|+++.
T Consensus 97 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~ 174 (317)
T d1vyhc1 97 MHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174 (317)
T ss_dssp CCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccccccceeeeccC-CCceEEeeccCcceeEeeccccee-eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc
Confidence 899999999999999 999999999999999999997764 677888999999999999999999999999999999876
Q ss_pred CCCCcceEEecccccceeEEEEccCCC-------------------cEEEeecCCCCCeEEEEECCCCeEEEEEec-CCC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQF-------------------NVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQ 264 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~ 264 (364)
. .....+..|...+.+++|+|++. .++++++ .|+.|++||+++++++..+.. ...
T Consensus 175 ~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~ 249 (317)
T d1vyhc1 175 K---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNW 249 (317)
T ss_dssp C---CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSC
T ss_pred c---eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc--CCCEEEEEECCCCcEEEEEeCCCCC
Confidence 4 44777888999999999988653 3466665 899999999999999988875 477
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+.+++++|++++|+++.. ||.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus 250 v~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 250 VRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCCCEEEEEEC------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999998854 99999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-41 Score=288.67 Aligned_cols=263 Identities=16% Similarity=0.253 Sum_probs=230.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee-----eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR-----NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
.|...|++++|+|+|++||+|+ ||.|+|||+.++.... ....|.+.|.+++|+| ++++|++|+.||.|++||+
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~ 126 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC-CCCEEEEeecccccccccc
Confidence 8999999999999999999997 8999999997654322 2346889999999999 9999999999999999998
Q ss_pred ccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 160 RVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 160 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
.... .....+..|...+.+++|+|++.++++++.|+.|++||+++. +.......|...|.+++|++++. .+++++
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~---~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~ 202 (337)
T d1gxra_ 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDGT-KLWTGG 202 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc-cccccc
Confidence 7544 334566788999999999999999999999999999998764 44677778999999999999985 455554
Q ss_pred CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEee
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
.|+.+++||+++++.+..+.+...+.+++|+|++++++++.. ++.+++||+.+++.. ....|...|++++|
T Consensus 203 --~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~ 273 (337)
T d1gxra_ 203 --LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME------SSNVEVLHVNKPDKY-QLHLHESCVLSLKF 273 (337)
T ss_dssp --TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET------TSCEEEEETTSSCEE-EECCCSSCEEEEEE
T ss_pred --ccccccccccccceeecccccccceEEEEEcccccccceecc------ccccccccccccccc-cccccccccceEEE
Confidence 799999999999999999999999999999999999998854 999999999988765 45578899999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+|++++|++++.||.|++||+.+++.+..+ .|.+.|++++|+|.
T Consensus 274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d 317 (337)
T d1gxra_ 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD 317 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCC
Confidence 999999999999999999999998877654 57889999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-41 Score=293.60 Aligned_cols=283 Identities=20% Similarity=0.344 Sum_probs=227.9
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCceeeee----------------eecCCCCCceEEEEcCCCCEEEEEecCC
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLL----------------KVTGEDDFPTSISWSQDAKTLAVGYMAS 109 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~----------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg 109 (364)
.+++++|+|+ .+++.+.|+.|++||+.+++..... ....|...|++++|+|++++|++|+.||
T Consensus 64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg 143 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143 (388)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccc
Confidence 4788999986 4777778999999999988754332 1235778899999999999999999999
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEE
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLL 188 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 188 (364)
.|++||...++.+..+.+|...|.+++|++ ++..+++++.++.+++||.++... ......+ ....++.+++ ++++|
T Consensus 144 ~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l 220 (388)
T d1erja_ 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQC-SLTLSIE-DGVTTVAVSPGDGKYI 220 (388)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-EEEEECS-SCEEEEEECSTTCCEE
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccceeeeeeecccccc-ccccccc-cccccccccCCCCCeE
Confidence 999999999999999999999999999999 999999999999999999987654 3334344 4445555555 88999
Q ss_pred EEEeCCCeEEEEeCCCCCCCcc----eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE-------
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKC----LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH------- 257 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~------- 257 (364)
++++.|+.|++||.+....... .....+|...|.+++|+|++. ++++++ .|+.|++||++++....
T Consensus 221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~ 297 (388)
T d1erja_ 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANNKSDSKTPNS 297 (388)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC--------------
T ss_pred EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEE--CCCcEEEEeccCCccccccccccc
Confidence 9999999999999876543111 122345788999999999985 556655 79999999998754322
Q ss_pred -----E-EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEe------ecCCCCEE
Q 040533 258 -----S-VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS------QSPDGLTV 325 (364)
Q Consensus 258 -----~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~------~~~~~~~l 325 (364)
. ..+...+.+++|+|++++|++|.. ||.|++||+.+++++.++++|.+.|++++ |+|++++|
T Consensus 298 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l 371 (388)
T d1erja_ 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371 (388)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred cceeeecccccceEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEE
Confidence 1 224567999999999999998854 99999999999999999999999999886 56799999
Q ss_pred EEEeCCCcEEEEEeeC
Q 040533 326 VSAAADETLRFWEAFG 341 (364)
Q Consensus 326 ~~~~~dg~i~vw~~~~ 341 (364)
++|+.||+|+||+++.
T Consensus 372 ~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 372 ATGSGDCKARIWKYKK 387 (388)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEEeCCCEEEEEeeee
Confidence 9999999999999863
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.1e-41 Score=283.77 Aligned_cols=275 Identities=19% Similarity=0.321 Sum_probs=245.4
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+|.+.|++++|+|++++||+|+.||+|+|||+++++.+..+.+|...|.+++|+| ++.+++++..++.+.+|+..
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETT
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec-cccccccccccccccccccc
Confidence 45679999999999999999999999999999999999999999999999999999999 99999999999999999988
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
.... ...+..|...+.++.|+|+++.+++++.|+.+++||+++. +.+..+.+|...+.+++|+|++ .++++++
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~-- 162 (317)
T d1vyhc1 90 GFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDG-TLIASCS-- 162 (317)
T ss_dssp SSCE-EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTS-SEEEEEE--
T ss_pred cccc-ccccccccccceeeeccCCCceEEeeccCcceeEeecccc---eeeeEEccCCCcceeeecccCC-CEEEEEe--
Confidence 6664 5667789999999999999999999999999999998765 4477888899999999999998 4666665
Q ss_pred CCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeecc--------------CCccCCCCeEEEeeCCCCceeee
Q 040533 241 QDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHG--------------FSSSGDGQKLCLWKYPHMTKWGE 305 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--------------~~~~~~~~~i~i~d~~~~~~~~~ 305 (364)
.|+.|++|++.+++....+.. ...+..+.++|++........ +.+++.|+.|++||+.+++++..
T Consensus 163 ~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 242 (317)
T d1vyhc1 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242 (317)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence 899999999999999888865 467899999987665332111 12345699999999999999999
Q ss_pred ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 306 LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 306 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.++|++++|+|.
T Consensus 243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~ 300 (317)
T d1vyhc1 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300 (317)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS
T ss_pred EeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.5e-42 Score=294.00 Aligned_cols=283 Identities=11% Similarity=0.186 Sum_probs=229.7
Q ss_pred eecccCCCcc-EE-EEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee--e
Q 040533 48 SNMMDWGRNN-IL-AIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI--R 123 (364)
Q Consensus 48 ~~~~~~~~~~-~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~ 123 (364)
+++++|+|++ ++ +++.|+.|++||.++++......+.+|.+.|.+++|+|++++|++|+.|++|+|||+.++... .
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 89 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence 7888999864 44 566789999999998887777788899999999999999999999999999999999876543 4
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce---eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV---TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.+..|...|.+++|+| +++.|++++.|+.+++|++...... ......|...|.+++|+|++++|++|+.|+.|++|
T Consensus 90 ~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~ 168 (371)
T d1k8kc_ 90 VILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168 (371)
T ss_dssp ECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEE
Confidence 4567889999999999 9999999999999999998866532 23445688999999999999999999999999999
Q ss_pred eCCCCCC---------------CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CC
Q 040533 201 DHSKMSS---------------SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQ 264 (364)
Q Consensus 201 d~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~ 264 (364)
|...... ...+.....|...|.+++|+|++. .+++++ .|+.|++||+.+++.+..+..+ .+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 245 (371)
T d1k8kc_ 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--HDSTVCLADADKKMAVATLASETLP 245 (371)
T ss_dssp ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--TTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred eeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccc--cCCcceEEeeecccceeeeeccccc
Confidence 9865321 123455667888999999999985 566665 7999999999999998888765 67
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC--Cceee--------------------------------------
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH--MTKWG-------------------------------------- 304 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~--~~~~~-------------------------------------- 304 (364)
|.+++|+|+++++++|. |+.+++|.... .....
T Consensus 246 v~s~~fs~d~~~la~g~-------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
T d1k8kc_ 246 LLAVTFITESSLVAAGH-------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA 318 (371)
T ss_dssp EEEEEEEETTEEEEEET-------TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred ceeeeecCCCCEEEEEc-------CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccc
Confidence 99999999999998774 66655554322 11100
Q ss_pred -eccccccceeEEeecCCC----CEEEEEeCCCcEEEEEeeC
Q 040533 305 -ELQHQTSRILELSQSPDG----LTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 305 -~~~~~~~~i~~i~~~~~~----~~l~~~~~dg~i~vw~~~~ 341 (364)
....|.+.|+++++.+.+ ..++|++.||.|++||+++
T Consensus 319 ~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 001378889999998754 3689999999999999865
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.7e-41 Score=283.07 Aligned_cols=265 Identities=15% Similarity=0.210 Sum_probs=229.7
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
+.+.+..++++|+|+.|+.+. ++.|.+|++++++....+.+|...|++++|+| ++++|++|+.||+|++||+......
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccccc
Confidence 445677899999999999985 67899999999999999999999999999999 9999999999999999999877643
Q ss_pred -eeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 166 -TSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 166 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
...+..|..+|.+++|+|++++|++++. +..+++|+++... ....+.+|...|.+++|+|+++.++++++ .|
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~---~~~~l~~h~~~v~~v~~~~~~~~~l~sgs--~d 168 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---SNGNLTGQARAMNSVDFKPSRPFRIISGS--DD 168 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---BCBCCCCCSSCEEEEEECSSSSCEEEEEE--TT
T ss_pred cccccccccCcccccccccccccccccccccccccccccccccc---ccccccccccccccccccccceeeecccc--cc
Confidence 3457789999999999999999999986 4569999987653 46677889999999999999988888876 89
Q ss_pred CeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-------cccccee
Q 040533 243 GCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-------HQTSRIL 314 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~ 314 (364)
+.|++||+++++....+.. ..+|.++.|+|++++++++.. |+.|++||..+++....++ +|.+.|+
T Consensus 169 ~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~------d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~ 242 (311)
T d1nr0a1 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 242 (311)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred cccccccccccccccccccccccccccccCccccccccccc------ccccccccccccccccccccccccccccccccc
Confidence 9999999999998888865 477999999999999998854 9999999999988776553 5788999
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccC---CceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHL---DGLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~---~~v~~~~~sp~ 363 (364)
+++|+|++++|++|+.||.|+|||+.+++.+..+..|. ..+.++.|++.
T Consensus 243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~ 294 (311)
T d1nr0a1 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294 (311)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCC
Confidence 99999999999999999999999999998888777553 34566766653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.6e-40 Score=281.62 Aligned_cols=245 Identities=19% Similarity=0.393 Sum_probs=215.4
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.++.+|.+.|++++|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+| ++.++++|+.|+.+.+|+..
T Consensus 49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~ 127 (340)
T d1tbga_ 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESS
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeeccccc
Confidence 45679999999999999999999999999999999999999999999999999999999 99999999999999999865
Q ss_pred cCcce--------------------------------------------eeeeecccCcEEEEEEcCCCCEEEEEeCCCe
Q 040533 161 VSNNV--------------------------------------------TSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 161 ~~~~~--------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
..... ......+...+....+.+.+.++++++.|+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 207 (340)
T d1tbga_ 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred ccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence 43210 0111223455777888888999999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCC
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRH 273 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~ 273 (364)
|++||+++. +.+..+.+|...|.+++|+|++. ++++++ .|+.|++||++.......+.. ...+.+++|+|+
T Consensus 208 v~i~d~~~~---~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s--~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 281 (340)
T d1tbga_ 208 AKLWDVREG---MCRQTFTGHESDINAICFFPNGN-AFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp EEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred EEEEECCCC---cEEEEEeCCCCCeEEEEECCCCC-EEEEEe--CCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence 999998764 55888889999999999999984 566665 799999999999988877743 356999999999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
++++++|.. |+.|++||+.+++++..+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus 282 ~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 282 GRLLLAGYD------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEET------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEEC------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999854 99999999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.3e-40 Score=283.09 Aligned_cols=290 Identities=18% Similarity=0.339 Sum_probs=238.2
Q ss_pred EEEEEeCCeEEEEECCCCcee--eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee---------
Q 040533 58 ILAIALGLELYLWKQENGEVQ--KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE--------- 126 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------- 126 (364)
.+....++.+.+|+....+.. .+....+|.+.|+|++|+|||++||+|+ |+.|+|||+.+++.+..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP 109 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence 456677888999997655432 2233347999999999999999999986 8999999999988776653
Q ss_pred ---------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 127 ---------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 127 ---------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
.|...|.+++|+| ++++|++|+.||.|++||...++. .....+|...|.+++|++++..+++++.++.+
T Consensus 110 ~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i 187 (388)
T d1erja_ 110 ENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 187 (388)
T ss_dssp ---------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccccccCCCCCEEEEEECC-CCCcceeccccccccccccccccc-ccccccccccccccccccccccccccccceee
Confidence 3566799999999 999999999999999999987664 66678899999999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------cCCCeEEEE
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------TKAQICGLE 269 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~~~v~~~~ 269 (364)
++||.+... ...... +.....++.+.+....++++++ .|+.|++||.+++.....+. +...|.+++
T Consensus 188 ~~~d~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 261 (388)
T d1erja_ 188 RIWDLRTGQ---CSLTLS-IEDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261 (388)
T ss_dssp EEEETTTTE---EEEEEE-CSSCEEEEEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred eeeeccccc---cccccc-cccccccccccCCCCCeEEEEc--CCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence 999987643 244433 3445566677765557888876 89999999999998877764 235799999
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCce------------eeeccccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK------------WGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
|+|++++++++.. |+.|++||+.++.. ......|...|.+++|+|++++|++|+.||.|++|
T Consensus 262 ~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vw 335 (388)
T d1erja_ 262 FTRDGQSVVSGSL------DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335 (388)
T ss_dssp ECTTSSEEEEEET------TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred ECCCCCEEEEEEC------CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 9999999998854 99999999976543 33445678899999999999999999999999999
Q ss_pred EeeCCCCCcceeccCCceeeeeecc
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
|+.+++.+..+.+|.+.|+++++++
T Consensus 336 d~~~~~~~~~l~~H~~~V~~~~~~~ 360 (388)
T d1erja_ 336 DKKSGNPLLMLQGHRNSVISVAVAN 360 (388)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS
T ss_pred ECCCCcEEEEEeCCCCCEEEEEEec
Confidence 9999999999999999999998654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4e-39 Score=276.87 Aligned_cols=244 Identities=14% Similarity=0.226 Sum_probs=204.5
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
.++|+|++|+|||++||+|+.||.|+|||.++++ .+..+++|.++|.+++|+| ++++|++|+.|+.|++||+.++..
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeeccccc
Confidence 5789999999999999999999999999998775 5677889999999999999 999999999999999999986653
Q ss_pred -eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCc-ceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 165 -VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK-CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 165 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
....+..|...|.+++|+|+++.|++++.|+.+++|++....... .......|...|.+++|+|++. ++++++ .|
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s--~D 162 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGS--CD 162 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEE--TT
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceeccc--cC
Confidence 233456788999999999999999999999999999987654322 2333456888999999999985 566765 89
Q ss_pred CeEEEEECCCC------------------eEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee
Q 040533 243 GCIKIWNVQKG------------------TCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303 (364)
Q Consensus 243 ~~i~i~d~~~~------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~ 303 (364)
+.+++||.... ..+.... +...+.+++|+|+++.++++.. |+.|++||+.+++.+
T Consensus 163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~------d~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------DSTVCLADADKKMAV 236 (371)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET------TTEEEEEEGGGTTEE
T ss_pred cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc------CCcceEEeeecccce
Confidence 99999998643 2233322 3466999999999999998754 999999999999999
Q ss_pred eeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 304 GELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 304 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
..+..|..+|.+++|+|++++|++|+ |+.+++|....
T Consensus 237 ~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~ 273 (371)
T d1k8kc_ 237 ATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS 273 (371)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred eeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence 99999999999999999998877654 78888877654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.1e-38 Score=265.52 Aligned_cols=282 Identities=14% Similarity=0.228 Sum_probs=217.6
Q ss_pred eecccCCCc-cEEEEEeCCeE--EEEECCCCceeeeeeecCC-CCCceEEEEcC--CCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRN-NILAIALGLEL--YLWKQENGEVQKLLKVTGE-DDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i--~iw~~~~~~~~~~~~~~~~-~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
..+++|+|+ ..++.+.+..+ +.|+....+......+.+| ...|++++|+| ++++||+|+.||+|+|||+..++.
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~ 99 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 99 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcc
Confidence 567888885 46666665554 5566555555555666677 46799999998 668999999999999999876543
Q ss_pred e--------eeeecCCCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE-EEE
Q 040533 122 I--------RNLEGHDKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL-LAS 190 (364)
Q Consensus 122 ~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~ 190 (364)
. ..+..|.++|.+++|++ ++.++++++. ++.+.+|+.+++.. ...+.+|...|.+++|+|++.+ +++
T Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 100 SNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNS-LGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCE-EEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred eeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeeccccc-ceeeeecccccccccccccccceEEE
Confidence 3 23456888999999999 8888887654 67899999987764 6677889999999999998764 778
Q ss_pred EeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEE
Q 040533 191 GGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLE 269 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~ 269 (364)
++.|+.+++||....+..........|...|.+++|+|++..++++++ .|+.|++||+++++.+..+..+ .++..+.
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceeccccc--cccceeeeeeccccccccccccccccccce
Confidence 999999999998765433333344567788999999998778888876 8999999999999999888654 4454444
Q ss_pred Ec---CCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc--eeEEeecCC-CCEEEEEeCCCcEEEEEe
Q 040533 270 WN---RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR--ILELSQSPD-GLTVVSAAADETLRFWEA 339 (364)
Q Consensus 270 ~~---~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~-~~~l~~~~~dg~i~vw~~ 339 (364)
|+ |++++|+++.. |+.|+|||+++++++..+..|... +..+++.+. +.+|++++.||.|++||+
T Consensus 256 ~s~~~~dg~~l~s~s~------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 256 FALSWLDSQKFATVGA------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEESSSSEEEEEET------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eeeeccCCCEEEEEeC------CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 44 67888888754 999999999999999887665543 334444332 347899999999999995
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-36 Score=252.76 Aligned_cols=263 Identities=16% Similarity=0.219 Sum_probs=210.9
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.+.||.+.|++++|+|++++|++|+.||+|++||+++++....+. .|...|++++|+| ++.+ ++++.|+.+++|+..
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~-~~~~~d~~v~~~~~~ 84 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDL-FTVSWDDHLKVVPAG 84 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSCE-EEEETTTEEEEECSS
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-ccee-ecccceeeEEEeccC
Confidence 345999999999999999999999999999999999999888774 6889999999999 7764 566779999999986
Q ss_pred cCcc--eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 161 VSNN--VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 161 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
.... .......+...+.+++|+|+++++++++ ++.+.+|+.... .... ....+.+++|+|++ .++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~-----~~~~--~~~~~~~~~~s~~~-~~l~~g~ 155 (299)
T d1nr0a2 85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL-----TEVP--ISYNSSCVALSNDK-QFVAVGG 155 (299)
T ss_dssp SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE-----EEEE--CSSCEEEEEECTTS-CEEEEEE
T ss_pred Cccccccccccccccccccccccccccccccccc-cccccccccccc-----cccc--cccccccccccccc-ccccccc
Confidence 5431 1233445778899999999998777665 568999994321 2222 34567889999998 4666665
Q ss_pred CCCCCeEEEEECCCCeEE--EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee---eccccccce
Q 040533 239 GTQDGCIKIWNVQKGTCI--HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG---ELQHQTSRI 313 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i 313 (364)
.|+.|++||+++++.. ....+...|.+++|+|++++++++.. ++.|++||+.++..+. .+..|...|
T Consensus 156 --~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~h~~~v 227 (299)
T d1nr0a2 156 --QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ------SRKVIPYSVANNFELAHTNSWTFHTAKV 227 (299)
T ss_dssp --TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred --cccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccc
Confidence 8999999999887654 34456788999999999999998854 9999999998876554 456788999
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee---ccCCceeeeeeccC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV---SHLDGLLSLKVSPI 363 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~---~~~~~v~~~~~sp~ 363 (364)
++++|+|++++|++|+.||.|++||+.++.....+. .+...+.++.|.+.
T Consensus 228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 280 (299)
T d1nr0a2 228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 280 (299)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET
T ss_pred ccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCC
Confidence 999999999999999999999999999876654433 34556777777653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-36 Score=256.20 Aligned_cols=299 Identities=17% Similarity=0.281 Sum_probs=230.2
Q ss_pred CCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 41 NLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
++...+ +++++++++.+++++.|+.|++||+.+++.. .++.+|.+.|++++|+|+ .+|++|+.||.|++|+....+
T Consensus 10 GH~~~v-itc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~--~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~ 85 (355)
T d1nexb2 10 GHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINKKFL--LQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC 85 (355)
T ss_dssp CCSSSC-EEEEEEETTEEEEEETTTEEEEEETTTTEEE--EEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTE
T ss_pred CcCCCc-EEEEEECCCEEEEEeCCCeEEEEECCCCcEE--EEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccc
Confidence 344443 4578888777888889999999999998764 445699999999999985 589999999999999999887
Q ss_pred eeeeeecCC--CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee----------------------eeeecccCcE
Q 040533 121 LIRNLEGHD--KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT----------------------SRINAHTAEV 176 (364)
Q Consensus 121 ~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----------------------~~~~~~~~~v 176 (364)
......... .......+.+ ++.++++++.|+.|++||+....... .....|...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 164 (355)
T d1nexb2 86 CTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 164 (355)
T ss_dssp EEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE
T ss_pred ccccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc
Confidence 776655433 3345566777 88999999999999999987654211 1122233334
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
. .+.+++++++++..|+.|++||++.. +.+....++...+.++.|+|++.. +++++ .|+.|++||++++..+
T Consensus 165 ~--~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~ 236 (355)
T d1nexb2 165 R--TVSGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKR-CISAS--MDTTIRIWDLENGELM 236 (355)
T ss_dssp E--EEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTTE-EEEEE--TTSCEEEEETTTCCEE
T ss_pred c--ccccccceeeeecccceeeeeecccc---cceeeeecccccccccccccccee-eeccc--ccceEEeeeccccccc
Confidence 3 34556789999999999999998764 447777788889999999999854 45544 7999999999999999
Q ss_pred EEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEe-ecCCCCEEEEEeCCCcE
Q 040533 257 HSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS-QSPDGLTVVSAAADETL 334 (364)
Q Consensus 257 ~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~-~~~~~~~l~~~~~dg~i 334 (364)
..+..+ ..|.++++++ ++++++. .|+.|++||+++.... +..|...+.++. +++++.+|++| .||.|
T Consensus 237 ~~~~~h~~~v~~~~~~~--~~l~~~~------~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i 305 (355)
T d1nexb2 237 YTLQGHTALVGLLRLSD--KFLVSAA------ADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQF 305 (355)
T ss_dssp EEECCCSSCCCEEEECS--SEEEEEC------TTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEE
T ss_pred ccccccccccccccccc--ceeeeee------ccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEE
Confidence 888754 6688898874 5777774 4999999999887654 344566666654 56677666655 58999
Q ss_pred EEEEeeCCCCCc-ceeccCCceeeeeeccC
Q 040533 335 RFWEAFGPSGSG-DFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 335 ~vw~~~~~~~~~-~~~~~~~~v~~~~~sp~ 363 (364)
++||+++++.+. .+.+|.++|++++|+|.
T Consensus 306 ~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~ 335 (355)
T d1nexb2 306 NIYNLRSGKLVHANILKDADQIWSVNFKGK 335 (355)
T ss_dssp EEEETTTCCBCCSCTTTTCSEEEEEEEETT
T ss_pred EEEECCCCCEEEEEecCCCCCEEEEEEcCC
Confidence 999999998875 46689999999999985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-35 Score=246.44 Aligned_cols=273 Identities=15% Similarity=0.189 Sum_probs=208.3
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce---
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--- 121 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--- 121 (364)
.+.+++|+|++ +++++.|+.|++||+++++..... ..+|...|++++|+|++++++ ++.|+.+++|+......
T Consensus 14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~h~~~v~~v~~~~~g~~~~-~~~d~~v~~~~~~~~~~~~~ 91 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-PDVHATMITGIKTTSKGDLFT-VSWDDHLKVVPAGGSGVDSS 91 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-SCSCSSCEEEEEECTTSCEEE-EETTTEEEEECSSSSSSCTT
T ss_pred CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCCcEEEEEeeccceeec-ccceeeEEEeccCCcccccc
Confidence 37888999863 667788999999999998865443 247899999999999997654 55799999999865432
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
......+...+.+++|+| +++++++++ ++.+.+|+.... ... .....+.+++|+|+++++++++.|+.|++||
T Consensus 92 ~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~~---~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d 164 (299)
T d1nr0a2 92 KAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGKL---TEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYK 164 (299)
T ss_dssp SCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTEE---EEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred cccccccccccccccccc-ccccccccc-cccccccccccc---ccc--ccccccccccccccccccccccccccccccc
Confidence 223345778899999999 888776665 568999985421 222 2345678999999999999999999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEcCCccce
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWNRHHKEI 277 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l 277 (364)
++.... .......|...|.+++|+|++. ++++++ .|+.|++||+.++....... +...|.+++|+|+++++
T Consensus 165 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 239 (299)
T d1nr0a2 165 LSGASV--SEVKTIVHPAEITSVAFSNNGA-FLVATD--QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239 (299)
T ss_dssp EETTEE--EEEEEEECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred cccccc--cccccccccccccccccccccc-cccccc--cccccccccccccccccccccccccccccccccccccccce
Confidence 875432 1123346888999999999985 455554 79999999998876654332 34679999999999999
Q ss_pred eeeccCCccCCCCeEEEeeCCCCceee--ecccc-ccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTKWG--ELQHQ-TSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+++.. |+.|++||+.++.... ....| ...+..+.| +++++|++|+.||.|++||+.
T Consensus 240 ~sgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 240 ATGSL------DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEET------TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred EEEcC------CCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 98854 9999999998765433 33333 445666655 567899999999999999974
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-33 Score=238.36 Aligned_cols=282 Identities=21% Similarity=0.375 Sum_probs=217.2
Q ss_pred cEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEE
Q 040533 33 EARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQ 112 (364)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 112 (364)
+.+++. ++.+.+ +.+++++++.+++++.|+.|+|||+.+++... .+.+|...|.+++|+|+ +|++|+.|+.++
T Consensus 8 ~~~~l~--GH~~~V-~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~--~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLK--GHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHTGGVWSSQMRDN--IIISGSTDRTLK 80 (342)
T ss_dssp CCEEEE--CSTTSC-EEEEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred cCEEEC--CcCCce-EEEEEECCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCCCCEEEEEeCCC--ccccceeccccc
Confidence 444554 344444 35688887778889999999999999998654 45699999999999874 899999999999
Q ss_pred EEecCCcceeeeeecCCCcEEE--------------------------------------EEeecCCCCEEEEeeCCCcE
Q 040533 113 LWDAETSKLIRNLEGHDKRVAT--------------------------------------ASWNHWNGHILTSGSQDKSI 154 (364)
Q Consensus 113 iw~~~~~~~~~~~~~~~~~v~~--------------------------------------~~~~~~~~~~l~~~~~dg~i 154 (364)
+|+............+...+.. ....+ ....++.++.|+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i 159 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMV 159 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSCE
T ss_pred ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc-ccceeeeecCCCeE
Confidence 9998765443332222111111 11223 55678888999999
Q ss_pred EEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEE
Q 040533 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 234 (364)
++||...... ...+.+|...+..+.+ ++.++++++.||.|++||++.. +.+..+..|...+.++++++ .++
T Consensus 160 ~~~d~~~~~~-~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~---~~l 230 (342)
T d2ovrb2 160 KVWDPETETC-LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKD---NIL 230 (342)
T ss_dssp EEEEGGGTEE-EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEET---TEE
T ss_pred EEeeccccee-eEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccc---eeeeEecccccceeEEecCC---CEE
Confidence 9999886654 5667778777766554 6789999999999999998764 45788888999999988876 467
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEecC----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc---
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDTK----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--- 307 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--- 307 (364)
++++ .|+.|++||+...+....+... ..+.++.++ +.+++++. .||.|++||+++++.+.++.
T Consensus 231 ~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s------~Dg~i~iwd~~tg~~i~~~~~~~ 300 (342)
T d2ovrb2 231 VSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS------DDGTVKLWDLKTGEFIRNLVTLE 300 (342)
T ss_dssp EEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE------TTSEEEEEETTTCCEEEEEEECT
T ss_pred EEEc--CCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEc------CCCEEEEEECCCCCEEEEEeccc
Confidence 7766 8999999999999888877543 345556554 56777774 49999999999999988764
Q ss_pred --ccccceeEEeecCCCCEEEEEeCCCc----EEEEEeeC
Q 040533 308 --HQTSRILELSQSPDGLTVVSAAADET----LRFWEAFG 341 (364)
Q Consensus 308 --~~~~~i~~i~~~~~~~~l~~~~~dg~----i~vw~~~~ 341 (364)
+|...|++++|+|++.+|++|+.||+ |++||+..
T Consensus 301 ~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 57788999999999999999999986 99999864
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.8e-34 Score=242.11 Aligned_cols=233 Identities=21% Similarity=0.355 Sum_probs=197.2
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+..+++++|.+.|++++|+| ++++|++|+.||+|++||+.+++. ...+..|..+|.+++|+|+++++++++.|+.+.+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEE-EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred eeeEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeeccccee-EEEEecccccEEeeEeeccceeeeeecccceeec
Confidence 45677899999999999999 999999999999999999987764 6778889999999999999999999999999999
Q ss_pred EeCCCCCCCc-ceEEe-----------------------------------------cccccceeEEEEccCCCcEEEee
Q 040533 200 WDHSKMSSSK-CLHRF-----------------------------------------RDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 200 wd~~~~~~~~-~~~~~-----------------------------------------~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
|+........ ....+ ..+...+....+.+.+ .+++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 202 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSG 202 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccc-ceeEEe
Confidence 9976532211 11111 1123345666677766 566665
Q ss_pred cCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec--ccccccee
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL--QHQTSRIL 314 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~ 314 (364)
+ .|+.|++||+++++++..+.. ...|.+++|+|++++++++.. |+.|++||+.....+..+ ..+...|.
T Consensus 203 ~--~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~------d~~i~~~~~~~~~~~~~~~~~~~~~~i~ 274 (340)
T d1tbga_ 203 A--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD------DATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp E--TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred e--cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC------CCeEEEEeecccccccccccccccCceE
Confidence 5 799999999999999998875 477999999999999998854 999999999998877665 35667899
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|+|++++|++|+.||.|++||+.+++.+..+.+|.++|++++|+|.
T Consensus 275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d 323 (340)
T d1tbga_ 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.7e-34 Score=241.18 Aligned_cols=256 Identities=15% Similarity=0.191 Sum_probs=207.4
Q ss_pred CCceEEEEcCCCCEEEEEecCC-cEEEEecCCc--ceeeeeecCC-CcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccC
Q 040533 88 DFPTSISWSQDAKTLAVGYMAS-KLQLWDAETS--KLIRNLEGHD-KRVATASWNHW-NGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~--~~~~~~~~~~-~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
..+++++|+|+++.|++++.+. .|+.|+.... .....+.+|. ..|++++|+|. ++.+|++|+.||+|++||+...
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 4568899999999999886443 2455664433 3455667774 67999999983 5679999999999999999765
Q ss_pred cce-------eeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcE
Q 040533 163 NNV-------TSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 163 ~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 233 (364)
... ...+..|.++|.+++|+++++++++++. ++.+.+|+..+. +.+..+.+|...|.+++|+|+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~ 174 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSRPMR 174 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEECSSSSCE
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc---ccceeeeecccccccccccccccce
Confidence 421 1234568889999999999999887764 678999997654 4588888999999999999999888
Q ss_pred EEeecCCCCCeEEEEECCCCeEEEEEec----CCCeEEEEEcCC-ccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 234 LASGGGTQDGCIKIWNVQKGTCIHSVDT----KAQICGLEWNRH-HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~v~~~~~~~~-~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
+++++ .|+.+++||....+....... ...|.+++|+|+ +.+++++.. |+.|++||+++++.+..+.+
T Consensus 175 ~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~------d~~i~iwd~~~~~~~~~l~~ 246 (325)
T d1pgua1 175 SMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS------DRKISCFDGKSGEFLKYIED 246 (325)
T ss_dssp EEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET------TCCEEEEETTTCCEEEECCB
T ss_pred EEEee--cccccccccccccccceecccccCCCCccEEeeeccccceecccccc------ccceeeeeeccccccccccc
Confidence 88876 899999999998887776643 356999999997 566776644 99999999999999999999
Q ss_pred cccceeEEeec---CCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCc
Q 040533 309 QTSRILELSQS---PDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDG 354 (364)
Q Consensus 309 ~~~~i~~i~~~---~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 354 (364)
|..++..+.|+ |+|++|++++.|+.|+|||+.+++.+..+..|...
T Consensus 247 ~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 295 (325)
T d1pgua1 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295 (325)
T ss_dssp TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCc
Confidence 98888777666 78999999999999999999999888877765544
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.2e-33 Score=234.55 Aligned_cols=273 Identities=16% Similarity=0.227 Sum_probs=215.4
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee-
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN- 124 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~- 124 (364)
.+.+++|++++ +++++.|+.|++|+....+.........+........+++++.++++++.|+.|++||+.+......
T Consensus 55 ~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~ 134 (355)
T d1nexb2 55 GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134 (355)
T ss_dssp CEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-------
T ss_pred CEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccc
Confidence 37788898865 6677889999999999888766655545555667778889999999999999999999986543322
Q ss_pred ----------------------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 125 ----------------------LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 125 ----------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
...|...+.. +.+ ++++++++..|+.|++||+++.+. .....++...+.++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~ 210 (355)
T d1nexb2 135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSG-HGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYD 210 (355)
T ss_dssp ----CCCEEESCTTTCTTEEEEEECCSSCEEE--EEE-ETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEE
T ss_pred cccceeccceeccccccceeeeeeeccccccc--ccc-ccceeeeecccceeeeeecccccc-eeeeecccccccccccc
Confidence 1223334433 344 789999999999999999987664 56677888899999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 262 (364)
|++.++++++.|+.|++||+++. ..+..+.+|...|.++++++ .++++++ .||.|++||++++.........
T Consensus 211 ~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~ 282 (355)
T d1nexb2 211 HERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKFSYHHT 282 (355)
T ss_dssp TTTTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCCCEEEECS---SEEEEEC--TTSEEEEEETTTCCEEEEEECT
T ss_pred ccceeeecccccceEEeeecccc---cccccccccccccccccccc---ceeeeee--cccccccccccccceecccccC
Confidence 99999999999999999998764 45888899999999999976 4677766 8999999999998776665444
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee-eccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG-ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
.......+++++.+++++. |+.|++||+++++.+. .+.+|.+.|.+++|+|+ .++++++.||.++||.+
T Consensus 283 ~~~~~~~~~~~~~~l~~g~-------d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 283 NLSAITTFYVSDNILVSGS-------ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TCCCCCEEEECSSEEEEEE-------TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEe-------CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 3334446677777776654 8999999999999885 46789999999999987 47888999999777654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-34 Score=248.09 Aligned_cols=268 Identities=14% Similarity=0.188 Sum_probs=202.6
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce------eeeeecCCCcEEEEEe------ecCCCCEEEEeeC
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL------IRNLEGHDKRVATASW------NHWNGHILTSGSQ 150 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~ 150 (364)
.++|...|.++++++ +++++|+.|++|+|||..+.+. ......|...+..+.. +..+..++++++.
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 459999999999864 6899999999999999765432 2222334444433322 2213357889999
Q ss_pred CCcEEEEEcccCcceeee---------eecccCcEEEEEEcCC-----CCEEEEEeCCCeEEEEeCCCCCCC--------
Q 040533 151 DKSIINHDVRVSNNVTSR---------INAHTAEVCGLKWSNE-----GNLLASGGDDNLVHVWDHSKMSSS-------- 208 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~---------~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~-------- 208 (364)
||.|++|++......... ...+...+..++|.++ +.++++++.||.+++||+......
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 999999998765432111 1124556778888775 358899999999999997532110
Q ss_pred -------cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-------cCCCeEEEEEcCCc
Q 040533 209 -------KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-------TKAQICGLEWNRHH 274 (364)
Q Consensus 209 -------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------~~~~v~~~~~~~~~ 274 (364)
........+...+.+++|+|++ ++++|+ .|++|++||+.+++++..+. +..+|.+++|+|+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs--~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred ccceecccceecccCCCCcEEEEEECCCC--EEEEEe--CCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence 0011112345568899999986 677876 89999999999999887764 34679999999999
Q ss_pred cceeeeccCCccCCCC---eEEEeeCCCCceeeecc-------------ccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 275 KEILSGHGFSSSGDGQ---KLCLWKYPHMTKWGELQ-------------HQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
++|+++.. |+ .|++||+.+++.+..+. +|.+.|++++|+|++++|++|+.|++|++||
T Consensus 244 ~~l~sgs~------D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd 317 (393)
T d1sq9a_ 244 SLLAIAHD------SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317 (393)
T ss_dssp TEEEEEEE------ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ceeeeecC------CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence 99999853 54 59999999988877664 7999999999999999999999999999999
Q ss_pred eeCCCCCcceeccCCcee----eeeecc
Q 040533 339 AFGPSGSGDFVSHLDGLL----SLKVSP 362 (364)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~----~~~~sp 362 (364)
+.+++.+.++.+|.+.|. .++|+|
T Consensus 318 ~~~g~~~~~l~gH~~~v~~~~~~~~~~~ 345 (393)
T d1sq9a_ 318 VKTKERITTLNMHCDDIEIEEDILAVDE 345 (393)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred CCCCCEEEEECCcCCcccCCccEEEECC
Confidence 999999999999987775 355655
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-32 Score=226.57 Aligned_cols=265 Identities=20% Similarity=0.436 Sum_probs=212.7
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.+++|+++.+++++.|+.|+|||+.+++... .+.+|.+.|++++| ++++|++|+.||.|++|++..+........
T Consensus 18 V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~--~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~ 93 (293)
T d1p22a2 18 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH 93 (293)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCEEE--EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred EEEEEEcCCEEEEEeCCCeEEEEECCCCcEEE--EEecCCCCEeeeec--ccceeecccccccccccccccccccccccc
Confidence 56788887788899999999999999988754 44599999999887 678999999999999999999888777665
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc--eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN--VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
+...... +.+ ....++++..++.+.+|+...... ....+..|...+..+.+.+ ..+++++.|+.+++||+++.
T Consensus 94 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~ 168 (293)
T d1p22a2 94 HCEAVLH--LRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTC 168 (293)
T ss_dssp CCSCEEE--EEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTC
T ss_pred ccccccc--ccc-cccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCC
Confidence 5544433 344 677899999999999999886653 2344567888888887765 47889999999999998764
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCc
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
+.+..+.++...+..+.+++ ..+++++ .|+.|++||+++.+.+.....+.... ..+++++.+++++..
T Consensus 169 ---~~~~~~~~~~~~v~~~~~~~---~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~sg~~--- 236 (293)
T d1p22a2 169 ---EFVRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVSGAY--- 236 (293)
T ss_dssp ---CEEEEEECCSSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCE-EEEECCSSEEEEEET---
T ss_pred ---cEEEEEcccccccccccCCC---CeEEEec--CCCEEEEEecccceeeeeecccceee-eeccccceEEEEEcC---
Confidence 45778888888888888765 3566665 79999999999999988887654422 245677888888754
Q ss_pred cCCCCeEEEeeCCC---------CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 286 SGDGQKLCLWKYPH---------MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 286 ~~~~~~i~i~d~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
|+.|++||+.. ...+..+.+|.+.|++++| ++.+|++|+.||+|++||
T Consensus 237 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 237 ---DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp ---TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred ---CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 99999999743 3456778899999999999 466899999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.7e-33 Score=233.20 Aligned_cols=262 Identities=23% Similarity=0.397 Sum_probs=200.4
Q ss_pred eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 79 KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 79 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
....+++|.+.|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|...|.+++|+| ++|++|+.|+.+++|+
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~ 83 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWN 83 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEE
T ss_pred cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC---Cccccceecccccccc
Confidence 34456699999865 4667899999999999999999999999999999999999999976 4999999999999999
Q ss_pred cccCcceeeeeecccCcEE--------------------------------------EEEEcCCCCEEEEEeCCCeEEEE
Q 040533 159 VRVSNNVTSRINAHTAEVC--------------------------------------GLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~--------------------------------------~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
....... .....+...+. ...+.+....+++++.|+.|++|
T Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 162 (342)
T d2ovrb2 84 AETGECI-HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 162 (342)
T ss_dssp TTTTEEE-EEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred cccccce-ecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEe
Confidence 8654321 11111111111 11223344577888889999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceee
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILS 279 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~ 279 (364)
|.+. ...+..+.+|...+..+.+ ++ ..+++++ .||.|++||++.++.+..+..+ ..+.++.+++ +++++
T Consensus 163 d~~~---~~~~~~~~~~~~~~~~~~~--~~-~~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s 232 (342)
T d2ovrb2 163 DPET---ETCLHTLQGHTNRVYSLQF--DG-IHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVS 232 (342)
T ss_dssp EGGG---TEEEEEECCCSSCEEEEEE--CS-SEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEE
T ss_pred eccc---ceeeEEEcCcccccccccC--CC-CEEEEEe--CCCeEEEeecccceeeeEecccccceeEEecCC--CEEEE
Confidence 8654 3456777777776666555 44 4566665 8999999999999998888755 5577776654 57887
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeeccc---cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-----cc
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQH---QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-----SH 351 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~ 351 (364)
+.. |+.|++||....+....+.. |...+.++.++ ++++++|+.||.|++||+++++.+..+. +|
T Consensus 233 ~s~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~ 304 (342)
T d2ovrb2 233 GNA------DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304 (342)
T ss_dssp EET------TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred EcC------CCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCC
Confidence 754 99999999999888777654 45566666664 5699999999999999999998877664 57
Q ss_pred CCceeeeeeccC
Q 040533 352 LDGLLSLKVSPI 363 (364)
Q Consensus 352 ~~~v~~~~~sp~ 363 (364)
.+.|++++|+|.
T Consensus 305 ~~~v~~v~~s~~ 316 (342)
T d2ovrb2 305 GGVVWRIRASNT 316 (342)
T ss_dssp TCEEEEEEECSS
T ss_pred CCCEEEEEECCC
Confidence 788999999995
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-31 Score=220.07 Aligned_cols=260 Identities=19% Similarity=0.337 Sum_probs=208.8
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.....|...|+|++ +|+++||+|+.||+|+|||+++++.+.++.+|...|.+++| ++++|++|+.|+.|++|++.
T Consensus 9 ~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 9 HCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp ECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESS
T ss_pred eccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeecccccccccccccc
Confidence 33447788899865 47999999999999999999999999999999999999988 67899999999999999998
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
.+... .....+.... ..+.+....++++..++.+.+||............+..|...+..+.+.+. .+.+++
T Consensus 84 ~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s-- 155 (293)
T d1p22a2 84 TGEML-NTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSAS-- 155 (293)
T ss_dssp SCCEE-EEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEE--
T ss_pred ccccc-cccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceeccc---cccccc--
Confidence 77643 3333333332 334456668999999999999999877665666677778888888887763 444544
Q ss_pred CCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
.|+.+++||+++++.+..+..+ ..+..+.++ +..++++.. |+.|++||+++.+.+....+|...+..+ +
T Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~ 225 (293)
T d1p22a2 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRCI--R 225 (293)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET------TSCEEEEETTTCCEEEEECCCSSCEEEE--E
T ss_pred CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC------CCEEEEEecccceeeeeecccceeeeec--c
Confidence 6999999999999998888754 456666665 456777654 9999999999999999999988887754 5
Q ss_pred CCCCEEEEEeCCCcEEEEEeeCCCC---------CcceeccCCceeeeeeccC
Q 040533 320 PDGLTVVSAAADETLRFWEAFGPSG---------SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 320 ~~~~~l~~~~~dg~i~vw~~~~~~~---------~~~~~~~~~~v~~~~~sp~ 363 (364)
+++.+|++|+.||.|++||+..... +..+.+|.+.|++++|+|.
T Consensus 226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~ 278 (293)
T d1p22a2 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 278 (293)
T ss_dssp CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS
T ss_pred ccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCC
Confidence 6788999999999999999865432 3456689999999999875
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=2e-32 Score=233.46 Aligned_cols=287 Identities=14% Similarity=0.054 Sum_probs=215.8
Q ss_pred ccCCC-c-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC--cEEEEecCCcceeeeee
Q 040533 51 MDWGR-N-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS--KLQLWDAETSKLIRNLE 126 (364)
Q Consensus 51 ~~~~~-~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~ 126 (364)
-+||| + .++|.+.++.|++||.+++...++ +|...|.+++|+|||++|++++.+. .|++||.++++.. .+.
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~----~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~ 82 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV----PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE 82 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEEC----SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcEEEc----cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence 45676 4 588888899999999998876442 6899999999999999998876554 7999999887655 566
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe----------CCCe
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG----------DDNL 196 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~ 196 (364)
.|...|.+++|+| ++++|++++.++.+++|++.+... ...+..|...+.+++|+|+|++|+.+. .++.
T Consensus 83 ~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 83 ENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred CCCceEEeeeecc-cccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence 7999999999999 999999999999999999987764 566778888999999999999998643 4557
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-------EEEEec-CCCe---
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC-------IHSVDT-KAQI--- 265 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-------~~~~~~-~~~v--- 265 (364)
+++||+.... ...+..+...+..++|+|+|+.++.. + .++.+.+||...... ...+.. ....
T Consensus 161 ~~v~d~~~~~----~~~~~~~~~~~~~~~~spdg~~l~~~-s--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (360)
T d1k32a3 161 IHVYDMEGRK----IFAATTENSHDYAPAFDADSKNLYYL-S--YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT 233 (360)
T ss_dssp EEEEETTTTE----EEECSCSSSBEEEEEECTTSCEEEEE-E--SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred eeeeccccCc----eeeecccccccccccccCCCCEEEEE-e--CCCceEcccccccceeeccccceEEEecccCccccc
Confidence 9999987642 34445567788899999999765554 3 689999998754322 222211 1111
Q ss_pred ---------------------------------EEEEEcCCccceeeecc-------CCccCCCCeEEEeeCCCCceeee
Q 040533 266 ---------------------------------CGLEWNRHHKEILSGHG-------FSSSGDGQKLCLWKYPHMTKWGE 305 (364)
Q Consensus 266 ---------------------------------~~~~~~~~~~~l~~~~~-------~~~~~~~~~i~i~d~~~~~~~~~ 305 (364)
..+...+++...+.... +.+++.++.|++||+.+++..
T Consensus 234 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-- 311 (360)
T d1k32a3 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-- 311 (360)
T ss_dssp GCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--
T ss_pred eECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE--
Confidence 12222222222111110 224566889999999886542
Q ss_pred ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCce
Q 040533 306 LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGL 355 (364)
Q Consensus 306 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v 355 (364)
.|.+.|.+++|+|||++|++++.||.|++||+++++...++..+..|+
T Consensus 312 --~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 312 --EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp --EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred --EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence 345679999999999999999999999999999999888777666554
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-32 Score=236.99 Aligned_cols=277 Identities=13% Similarity=0.174 Sum_probs=200.2
Q ss_pred CCCCcceeecccCCCccEEEEEeCCeEEEEECCCCce----eeeeeecCCCCCceEEEE------cC-CCCEEEEEecCC
Q 040533 41 NLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEV----QKLLKVTGEDDFPTSISW------SQ-DAKTLAVGYMAS 109 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~----~~~~~~~~~~~~v~~~~~------s~-~~~~l~~~~~dg 109 (364)
.+..+ +.+++++++.+++++.|+.|++||..+.+. ........|...+..+.. +. ++.++++++.||
T Consensus 12 ~H~~~--I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 12 AHDAD--IFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp CSSSC--EEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred cccCc--cEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence 44444 445667788899999999999999776542 112222344444333322 11 235778899999
Q ss_pred cEEEEecCCcceeeee----------ecCCCcEEEEEeecCC----CCEEEEeeCCCcEEEEEcccCcc-----------
Q 040533 110 KLQLWDAETSKLIRNL----------EGHDKRVATASWNHWN----GHILTSGSQDKSIINHDVRVSNN----------- 164 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~----------~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~~~d~~~~~~----------- 164 (364)
.|++|++........+ ..+...+..++|.+.. +.++++++.||.+++|++.....
T Consensus 90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 169 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169 (393)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence 9999997654322111 1244567788887622 46889999999999999864321
Q ss_pred ------eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCC---cceEEecccccceeEEEEccCCCcEEE
Q 040533 165 ------VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS---KCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 165 ------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
.......+...+.+++|+|++ +|++|+.|+.|++||+++.+.. +....+.+|..+|.+++|+|++ .+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~ 247 (393)
T d1sq9a_ 170 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLA 247 (393)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-TEEE
T ss_pred ceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc-ceee
Confidence 011122345568899999997 8999999999999998765331 1123445688999999999999 4666
Q ss_pred eecCCCCC---eEEEEECCCCeEEEEEe--------------cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 236 SGGGTQDG---CIKIWNVQKGTCIHSVD--------------TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 236 ~~~g~~d~---~i~i~d~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
+++ .|+ .|++||+++++.+..+. |...|++++|+|++++|+++.. |+.|++||+.
T Consensus 248 sgs--~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~------D~~v~vWd~~ 319 (393)
T d1sq9a_ 248 IAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW------DGKLRFWDVK 319 (393)
T ss_dssp EEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET------TSEEEEEETT
T ss_pred eec--CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC------CCEEEEEECC
Confidence 665 565 59999999999888774 4467999999999999998854 9999999999
Q ss_pred CCceeeecccccccee----EEeecCCCCEEEEEe
Q 040533 299 HMTKWGELQHQTSRIL----ELSQSPDGLTVVSAA 329 (364)
Q Consensus 299 ~~~~~~~~~~~~~~i~----~i~~~~~~~~l~~~~ 329 (364)
+++++.++++|.+.|. .++|+|++..+++++
T Consensus 320 ~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 9999999999998876 478999988876554
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-32 Score=231.51 Aligned_cols=270 Identities=10% Similarity=0.063 Sum_probs=194.1
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee---eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR---NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
.++|++.|++|+|+|++++||+|+.||+|+|||++++.... ...+|..+|.+++|+|.++.+|++|+.||.|++|++
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~ 86 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence 35899999999999999999999999999999997664432 233699999999999955678999999999999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcce-EEeccc--ccceeEEEEccCCCcEEEe
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL-HRFRDH--RAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~~~~ 236 (364)
............+........+.++...+++++.++.+++||++........ .....+ ......+.+.+.+. .+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 165 (342)
T d1yfqa_ 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIV 165 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC-ceee
Confidence 8777544444444444556666778889999999999999998654332211 111111 22334556666664 5555
Q ss_pred ecCCCCCeEEEEECCCCeEEEEE----ecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCCceee-------
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSV----DTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG------- 304 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~------- 304 (364)
++ .|+.|++||+...+..... ..........+.+ ++..++++.. ++.+.+|+........
T Consensus 166 ~~--~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~~~v~~~~~~~~~~~~~~~~~ 237 (342)
T d1yfqa_ 166 GM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI------DGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp EE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET------TSEEEEEECCTTCCSTTCTTCEE
T ss_pred ec--CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC------CCeEEEEEecCCcceeeccccce
Confidence 54 7999999999876543222 2234455555554 4556666543 9999999876432211
Q ss_pred --------eccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec-cCCceeeeeec
Q 040533 305 --------ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS-HLDGLLSLKVS 361 (364)
Q Consensus 305 --------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s 361 (364)
....|...+++++|+|++++|++|+.||.|++||+.+++.+..+.. |...+.+++++
T Consensus 238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~ 303 (342)
T d1yfqa_ 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEEC
T ss_pred eeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeC
Confidence 1234667899999999999999999999999999999888777753 44445554444
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.5e-32 Score=227.80 Aligned_cols=298 Identities=12% Similarity=0.090 Sum_probs=219.6
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCce-eeeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCccee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEV-QKLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.+++++|+|++ +++++.|+.|+|||+.++.. .......+|..+|.+++|+|++ .+|++|+.||.|++|++..+...
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~ 92 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc
Confidence 48999999863 66777899999999876543 2333344799999999999864 58999999999999999988777
Q ss_pred eeeecCCCcE-EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee---ec--ccCcEEEEEEcCCCCEEEEEeCCCe
Q 040533 123 RNLEGHDKRV-ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NA--HTAEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 123 ~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~--~~~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
.....+.... ....+.+ +...+++++.++.+++||++......... .. .......+.+.+.+..+++++.|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (342)
T d1yfqa_ 93 QALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ 171 (342)
T ss_dssp EECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred cccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCc
Confidence 6665554444 3444555 88999999999999999997654322221 11 1223445667778889999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---------EEEE-------e
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---------IHSV-------D 260 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---------~~~~-------~ 260 (364)
|++||++.................+.+..+.+.....+++++ .||.+.+|+...... .... .
T Consensus 172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
T d1yfqa_ 172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249 (342)
T ss_dssp EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCS
T ss_pred EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec--CCCeEEEEEecCCcceeeccccceeeeeeeccCCCc
Confidence 999999876654444444555566777777776667777766 899999999865321 1111 1
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+...+.+++|+|++++|++|.. ||.|++||+.+++.+.++..+ ..+..++|+|++++|++++.|+.+++|...
T Consensus 250 ~~~~v~~l~~sp~~~~lasg~~------Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 250 LAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ccccceeEEecCCccEEEEECC------CCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 2245889999999999999854 999999999999999888644 234567888899999999999998888643
Q ss_pred CCCCCcceeccCCceeee
Q 040533 341 GPSGSGDFVSHLDGLLSL 358 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~ 358 (364)
. ..+..|...|..+
T Consensus 323 ~----~~~~~~~~~i~~~ 336 (342)
T d1yfqa_ 323 D----QTIELNASSIYII 336 (342)
T ss_dssp C----TTSCCCCCEEEEE
T ss_pred C----CCccCCCCeEEEE
Confidence 2 2344556566543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-31 Score=220.46 Aligned_cols=252 Identities=14% Similarity=0.135 Sum_probs=197.2
Q ss_pred eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEE
Q 040533 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINH 157 (364)
Q Consensus 78 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 157 (364)
..+..+.+|..+|++++|+| |++|+.||+|++||+.++. ..|...|.++++++ + ..+++++.|+++++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~-~-~~~~s~s~D~~v~~w 72 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSK-A-QEYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCS-T-TCCEEEETTTEEEET
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecC-C-CeEEEEeeccccccc
Confidence 34556779999999999987 9999999999999987643 57999999999986 4 567899999999999
Q ss_pred EcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 158 DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 158 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
++.... ....+..+++++++..++++ .++.+.+|+..... .+..+.. ... ..++++++..+++.+
T Consensus 73 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~-~~~--~~~~~~~~~~~~v~~ 137 (287)
T d1pgua2 73 GITKHE--------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGD---IIKSVRL-NSP--GSAVSLSQNYVAVGL 137 (287)
T ss_dssp TEEEEE--------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCC---EEEEEEC-SSC--EEEEEECSSEEEEEE
T ss_pred cccccc--------cccceeeeeeccCCceEEEe-ecccceeeecccee---eeeeccc-cce--eeeeeccCcceeeec
Confidence 976422 23457788899888766655 46678889866543 3444432 233 345667775565554
Q ss_pred cCCCCCeEEEEECCCCeEEEEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee-ecccccccee
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG-ELQHQTSRIL 314 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~ 314 (364)
. .++.+++|++...+....+. +...+.+++|+|++.+|+++.. ++.|++||+.+++... .+..|...|.
T Consensus 138 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~h~~~v~ 209 (287)
T d1pgua2 138 E--EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV------MGKILLYDLQSREVKTSRWAFRTSKIN 209 (287)
T ss_dssp T--TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred c--ccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc------cccccceeecccccccccccccccccc
Confidence 3 55689999998766665554 3467999999999999999865 9999999999988765 4678999999
Q ss_pred EEeecCC----------CCEEEEEeCCCcEEEEEeeCC-CCCcceeccCCceeeeeeccC
Q 040533 315 ELSQSPD----------GLTVVSAAADETLRFWEAFGP-SGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~----------~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|+|+ +.+|++|+.|+.|++||+..+ +....+.+|.+.|++++|+|.
T Consensus 210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~ 269 (287)
T d1pgua2 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269 (287)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC
Confidence 9999875 468999999999999999774 445556689999999999985
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-30 Score=215.31 Aligned_cols=256 Identities=14% Similarity=0.205 Sum_probs=194.9
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.+++|++ +++++.||.|++||+.++. .+|...|.++++++++ .+++++.|++|++|++...+
T Consensus 16 I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-------~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~------- 78 (287)
T d1pgua2 16 ITALTVNP--LISGSYDGRIMEWSSSSMH-------QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE------- 78 (287)
T ss_dssp EEEEETTT--TEEEETTSCEEETTTTEEE-------CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------
T ss_pred eEEEEECc--EEEEeCCCeEEEEECCCCC-------CCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-------
Confidence 77888987 9999999999999987643 3889999999998765 57889999999999975432
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN-LVHVWDHSKMS 206 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~ 206 (364)
....+..+++++ ++..++++ .++.+.+|+..++.. ...+. +...+ .++++++..+++++.++ .+++|++....
T Consensus 79 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~ 152 (287)
T d1pgua2 79 FGSQPKVASANN-DGFTAVLT-NDDDLLILQSFTGDI-IKSVR-LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLE 152 (287)
T ss_dssp CSSCEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCE-EEEEE-CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEE
T ss_pred cccceeeeeecc-CCceEEEe-ecccceeeeccceee-eeecc-cccee--eeeeccCcceeeeccccceeeeeeccccc
Confidence 334567788887 66666554 556788898876664 33333 33344 34567777888888765 79999976532
Q ss_pred CCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE-e-cCCCeEEEEEcCCcc--------
Q 040533 207 SSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV-D-TKAQICGLEWNRHHK-------- 275 (364)
Q Consensus 207 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~-~~~~v~~~~~~~~~~-------- 275 (364)
....+ ..+...+.+++|+|++. ++++++ .||.|++||+.+++..... . +...|.+++|+|.+.
T Consensus 153 ---~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~--~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 153 ---VSFDLKTPLRAKPSYISISPSET-YIAAGD--VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226 (287)
T ss_dssp ---EEEECSSCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred ---eeeeeeeccCCceeEEEeccCcc-cccccc--ccccccceeecccccccccccccccccceeeecccccccccccCC
Confidence 22222 34678899999999995 555655 7999999999998876542 2 357799999998654
Q ss_pred --ceeeeccCCccCCCCeEEEeeCCC-CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 276 --EILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 276 --~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
++++| +.|+.|++||+++ .+.+..+.+|.+.|++++|+|++ .|++++.||.|++|++
T Consensus 227 ~~~l~sg------s~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 227 EDLVATG------SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCEEEEE------ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCeeEee------cCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 45555 4599999999976 55677788999999999999986 6899999999999996
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=8.1e-28 Score=199.53 Aligned_cols=274 Identities=13% Similarity=0.135 Sum_probs=217.8
Q ss_pred EEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeecCCCcEEEEEe
Q 040533 59 LAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEGHDKRVATASW 137 (364)
Q Consensus 59 ~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 137 (364)
++.+.++.|.+||+++++....+.+ ...+..++|+|||++|+ ++..++.|++||+.+++.+..+..+. .+..++|
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~---g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPV---GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEEC---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccc
Confidence 4556789999999999988766654 34578999999999875 56678999999999999999988665 4688999
Q ss_pred ecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCCCcceEEec
Q 040533 138 NHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLAS-GGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 138 ~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
++ ++. .++++..++.+.+|+..++.. ...+. +.....++.|+|++..++. +..++.+.+|+..+.. .+..+.
T Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 155 (301)
T d1l0qa2 82 SP-DGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---VINTVS 155 (301)
T ss_dssp CT-TSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEE
T ss_pred cc-ccccccccccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccc---eeeecc
Confidence 99 665 555666778999999987653 44443 4456788999999987654 5567889999976643 344444
Q ss_pred ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEe
Q 040533 216 DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~ 295 (364)
+...+..+.++|++..++++.. .++.+.+|+....+.............+++++++..++.+.. ...++.|++|
T Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~---~~~~~~v~v~ 229 (301)
T d1l0qa2 156 -VGRSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV---DKYFNTVSMI 229 (301)
T ss_dssp -CCSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE---CSSCCEEEEE
T ss_pred -cCCCceEEEeeccccceeeecc--cccccccccccceeeeecccccCCcceeeccccccccccccc---cceeeeeeee
Confidence 3455788999999987777765 678899999999988888888888999999999998876532 2336789999
Q ss_pred eCCCCceeeeccccccceeEEeecCCCCEE-EEEeCCCcEEEEEeeCCCCCccee
Q 040533 296 KYPHMTKWGELQHQTSRILELSQSPDGLTV-VSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 296 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
|..+++.+..+..+ ..+.+++|+|||++| ++++.|+.|++||+.+++.+.++.
T Consensus 230 D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 230 DTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 99999998887654 457999999999987 577789999999999998877775
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=2.8e-27 Score=199.34 Aligned_cols=277 Identities=14% Similarity=0.086 Sum_probs=206.7
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE-EEEecCCcEEEEecCCcceeeeeecCCC-----
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDK----- 130 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~----- 130 (364)
.+++++.|+.|.+||+++++....+....+...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence 4788889999999999999988777776667778999999999987 4667889999999999999888775533
Q ss_pred cEEEEEeecCCCCEEEEeeC------------CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 131 RVATASWNHWNGHILTSGSQ------------DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~------------dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
.+..++|+| +++.++++.. +..+.+||..+... ...+. +...+..++|+|+|+++++++.+ +.
T Consensus 83 ~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~ 157 (337)
T d1pbyb_ 83 SLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITMLAWARDGSKLYGLGRD--LH 157 (337)
T ss_dssp CTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCEEECTTSSCEEEESSS--EE
T ss_pred ceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEEEEcCCCCEEEEEcCC--cc
Confidence 344689999 8888887753 56788899887663 33343 44567889999999999988754 67
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcE-----------------------EEeecCCCCCeEEEEECCCCeE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNV-----------------------LASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------------~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
+||..... ....+..+.. .....+.|++..+ ... +..++.+.+|+..++..
T Consensus 158 ~~d~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 231 (337)
T d1pbyb_ 158 VMDPEAGT---LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP--TAYRTGLLTMDLETGEM 231 (337)
T ss_dssp EEETTTTE---EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG--GGEEEEEEEEETTTCCE
T ss_pred eeeeecCc---EEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeee--cccCccEEEEEcCCCcE
Confidence 89976542 2333322111 1111111111111 011 11456799999998876
Q ss_pred EEEE--ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCc
Q 040533 256 IHSV--DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 256 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
.... .....+..+.++|++.+++.. ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.||.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~ 302 (337)
T d1pbyb_ 232 AMREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSE
T ss_pred EEEEecCCCcceEEEEecccceEEEEc--------cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCc
Confidence 5432 344668889999999998876 7899999999999998875 4567899999999999999999999
Q ss_pred EEEEEeeCCCCCcceeccCC
Q 040533 334 LRFWEAFGPSGSGDFVSHLD 353 (364)
Q Consensus 334 i~vw~~~~~~~~~~~~~~~~ 353 (364)
|++||..+.+.+..+....+
T Consensus 303 i~v~D~~t~~~v~~i~~~g~ 322 (337)
T d1pbyb_ 303 LAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEEEETTTCCEEEEEECGGG
T ss_pred EEEEECCCCcEEEEEECCCC
Confidence 99999999998887764433
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=6.9e-27 Score=203.77 Aligned_cols=299 Identities=9% Similarity=0.023 Sum_probs=212.5
Q ss_pred cCCCccE--EEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee--e--
Q 040533 52 DWGRNNI--LAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN--L-- 125 (364)
Q Consensus 52 ~~~~~~~--~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~-- 125 (364)
++++.++ ++...||.|++||..+++....+. .| ..+..++|||||++|++++.||.|++||+.+++.... +
T Consensus 27 ~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~--~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~ 103 (426)
T d1hzua2 27 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID--TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 103 (426)
T ss_dssp CCCGGGEEEEEETTTTEEEEEETTTCSEEEEEE--CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred cCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC
Confidence 3344444 344467999999999998766554 44 4689999999999999999999999999998875432 2
Q ss_pred -ecCCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeeecc-----------cCcEEEEEEcCCCCEEEEEe
Q 040533 126 -EGHDKRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRINAH-----------TAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 126 -~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~ 192 (364)
.+|...+.+++|+| +++++ +++..++.+.+||..+... ......| ......+.+++++..++...
T Consensus 104 ~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~ 181 (426)
T d1hzua2 104 GIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181 (426)
T ss_dssp CSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence 24556677788889 88876 4555889999999987664 3333333 33455667777777666554
Q ss_pred C-CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEE
Q 040533 193 D-DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGL 268 (364)
Q Consensus 193 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~ 268 (364)
. .+.+.+++...... .......+...+..+.|+|++++++++.. .+..+.+++..+++.+...... ......
T Consensus 182 ~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (426)
T d1hzua2 182 KETGKVLLVNYKDIDN--LTVTSIGAAPFLADGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257 (426)
T ss_dssp TTTTEEEEEECSSSSS--CEEEEEECCSSEEEEEECTTSCEEEEEET--TCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred CCCCeEEEEEeccccc--eeeEEeccCCccEeeeECCCCcEEEeeee--cccceeeeecccccEEEEeccCCccccccee
Confidence 3 35666666554322 12233356777899999999988888765 7889999999999998887643 222233
Q ss_pred EEcCCcc-ceeeeccCCccCCCCeEEEeeCCC-------CceeeeccccccceeEEeecCCCCEEEE-------EeCCCc
Q 040533 269 EWNRHHK-EILSGHGFSSSGDGQKLCLWKYPH-------MTKWGELQHQTSRILELSQSPDGLTVVS-------AAADET 333 (364)
Q Consensus 269 ~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~-------~~~dg~ 333 (364)
.+...+. .+.... ...++.+.+|+... ++....+.+|...+..++|+|++++|++ ++.|++
T Consensus 258 ~~~~~~~~~~~~~~----~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t 333 (426)
T d1hzua2 258 NFVHPKYGPVWSTS----HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333 (426)
T ss_dssp EEEETTTEEEEEEE----CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC
T ss_pred eeecCCCCceEEec----cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE
Confidence 3332222 222211 13478888887654 4677888999999999999999999995 556889
Q ss_pred EEEEEeeCCCCCccee---------ccCCceeeeeeccC
Q 040533 334 LRFWEAFGPSGSGDFV---------SHLDGLLSLKVSPI 363 (364)
Q Consensus 334 i~vw~~~~~~~~~~~~---------~~~~~v~~~~~sp~ 363 (364)
|+|||+.+++...++. .|...|..++|||.
T Consensus 334 v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD 372 (426)
T d1hzua2 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 372 (426)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence 9999999988766542 34566999999995
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=5.2e-28 Score=205.82 Aligned_cols=254 Identities=9% Similarity=0.000 Sum_probs=191.8
Q ss_pred eEEEEcC-CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcceee
Q 040533 91 TSISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNVTS 167 (364)
Q Consensus 91 ~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~ 167 (364)
..-.||| ||+++|+++ +|.|++||++++...+. .|...|.+++|+| +++.|++++.+. .|++||++++. ..
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~--~~ 79 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGK--AE 79 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCC--EE
T ss_pred hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCc--EE
Confidence 4567999 999999986 68999999988876653 5899999999999 998888766553 79999998765 45
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec-------CC
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG-------GT 240 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------g~ 240 (364)
.+..|...+.+++|+|++++|++++.++.+++|++... +....+..+...+.+++|+|+++.++.+.. +.
T Consensus 80 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 80 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred EeeCCCceEEeeeecccccccceecccccccccccccc---ceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 67789999999999999999999999999999998764 346667778888999999999977665431 23
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee-------eecc------
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW-------GELQ------ 307 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~-------~~~~------ 307 (364)
.++.+++||+.+++......+...+..+.|+|+|+.|+.+.. ++.+.+|+....... ..+.
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 230 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY------RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 230 (360)
T ss_dssp CEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES------CCCCCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred cccceeeeccccCceeeecccccccccccccCCCCEEEEEeC------CCceEcccccccceeeccccceEEEecccCcc
Confidence 567899999999988777777788999999999999988743 777777875432111 0000
Q ss_pred ------------------------------ccccceeEEeecCC-------------CCEEEEEeCCCcEEEEEeeCCCC
Q 040533 308 ------------------------------HQTSRILELSQSPD-------------GLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 308 ------------------------------~~~~~i~~i~~~~~-------------~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
...+....+...++ +.++++++.++.|++||+.+++
T Consensus 231 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~- 309 (360)
T d1k32a3 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK- 309 (360)
T ss_dssp CGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-
T ss_pred ccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-
Confidence 00111122222222 2245566778899999987754
Q ss_pred CcceeccCCceeeeeeccC
Q 040533 345 SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 345 ~~~~~~~~~~v~~~~~sp~ 363 (364)
...|.+.|.+++|||.
T Consensus 310 ---~~~~~~~v~~~~~SpD 325 (360)
T d1k32a3 310 ---VTEVKNNLTDLRLSAD 325 (360)
T ss_dssp ---EEEEEEEEEEEEECTT
T ss_pred ---EEEecCCcCEEEECCC
Confidence 3455677999999995
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=2.5e-26 Score=199.98 Aligned_cols=292 Identities=7% Similarity=-0.024 Sum_probs=200.1
Q ss_pred CCccE--EEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee--eeee---
Q 040533 54 GRNNI--LAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI--RNLE--- 126 (364)
Q Consensus 54 ~~~~~--~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~--- 126 (364)
+..++ ++.+.++.|.+||..++++...+. .+ ..+..++|||||+++++++.||.|.+||+.+++.. ..+.
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~--~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLD--TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEE--CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence 34444 455678999999999999876665 33 36999999999999999999999999999887643 3332
Q ss_pred cCCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeee-----------cccCcEEEEEEcCCCCEE-EEEeC
Q 040533 127 GHDKRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRIN-----------AHTAEVCGLKWSNEGNLL-ASGGD 193 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l-~~~~~ 193 (364)
.|.+.+.+..|+| ++++| ++++.++.|++||..+++. ...+. .+......+.++|++..+ ++...
T Consensus 106 ~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~ 183 (432)
T d1qksa2 106 EARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183 (432)
T ss_dssp EEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence 4555666777888 88865 7788899999999987764 33222 234566788999998865 45567
Q ss_pred CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC------CeEE
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------QICG 267 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------~v~~ 267 (364)
++.|.+||....+.. .+..+ .+...+..++|+|++++++++.. .++.+.++|..+++.+..+.... ....
T Consensus 184 ~~~i~~~d~~~~~~~-~~~~i-~~g~~~~~~~~spdg~~~~va~~--~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~ 259 (432)
T d1qksa2 184 TGKILLVDYTDLNNL-KTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN 259 (432)
T ss_dssp TTEEEEEETTCSSEE-EEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred CCeEEEEEccCCCcc-eEEEE-cccCccccceECCCCCEEEEecc--ccceEEEeecccceEEEEeccCccccccCcccc
Confidence 799999998765431 12222 24556789999999988888765 78899999999998887775432 2333
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCc-------eeeecc-------------------------ccccceeE
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT-------KWGELQ-------------------------HQTSRILE 315 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~-------~~~~~~-------------------------~~~~~i~~ 315 (364)
..+...+....... ..++.|.+|+..... ....+. .|.....+
T Consensus 260 ~~~~~~g~~~~~~~-----lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~s 334 (432)
T d1qksa2 260 FVHPTFGPVWATSH-----MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS 334 (432)
T ss_dssp EEETTTEEEEEEEB-----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred eecCCCCceecccc-----cCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeE
Confidence 34444444433322 125667777653321 111111 11111223
Q ss_pred EeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 316 LSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 316 i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++ ||++.|++++.|+.+++|++.++.. +..|...|..++|||.
T Consensus 335 v~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~D 378 (432)
T d1qksa2 335 VAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKD 378 (432)
T ss_dssp EEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTT
T ss_pred EEE-EechhhcccccCCceEecccccccc---cCCCCCcEEEeEECCC
Confidence 444 7888888888888899998765533 3356778999999985
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.94 E-value=1.3e-24 Score=183.44 Aligned_cols=285 Identities=8% Similarity=-0.040 Sum_probs=203.0
Q ss_pred cCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeecC
Q 040533 52 DWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 52 ~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
+++++ .+++++.++.|.+||+.+++......+ .+...+.+++|+|||++++ ++..++.|.+||+.+++.+..+...
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc-CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 45554 466777899999999999988766655 4566789999999999875 5557899999999999888776543
Q ss_pred C------CcEEEEEeecCCCCEEEEee------------CCCcEEEEEcccCcceeee-eecccCcEEEEEEcCCCCEEE
Q 040533 129 D------KRVATASWNHWNGHILTSGS------------QDKSIINHDVRVSNNVTSR-INAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 129 ~------~~v~~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~ 189 (364)
. ..+..++|+| +++++++++ .++.+.+|+..++...... .......+..+.+++++.+++
T Consensus 82 ~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred ccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence 2 2345789999 888887765 4677889998776542111 112234456677777776665
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec-----------------------CCCCCeEE
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG-----------------------GTQDGCIK 246 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------------g~~d~~i~ 246 (364)
++ +.+.+|++.+.. .+..+..+ .....+.++|++..+++... +..+..+.
T Consensus 161 ~~---~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
T d1jmxb_ 161 AG---PDIYKMDVKTGK---YTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233 (346)
T ss_dssp ES---SSEEEECTTTCC---EEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred eC---CcceEEEccCCC---EEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence 43 458899976543 34444322 22333444444433222111 11456688
Q ss_pred EEECCCCeEEEEE--ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE
Q 040533 247 IWNVQKGTCIHSV--DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT 324 (364)
Q Consensus 247 i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 324 (364)
+||+.++...... .+...+..+.+++++.+++... ++.|.+||..+++.+..+. +...+.+++|+|||++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~ 305 (346)
T d1jmxb_ 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-------LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDK 305 (346)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-------ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSC
T ss_pred EEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-------CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCE
Confidence 8888887765443 3456688899999999888764 6789999999999888775 3456899999999999
Q ss_pred EEEEeCCCcEEEEEeeCCCCCcceeccCC
Q 040533 325 VVSAAADETLRFWEAFGPSGSGDFVSHLD 353 (364)
Q Consensus 325 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 353 (364)
|++++.||.|++||+.+.+.+.++..+.+
T Consensus 306 l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 306 LYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 99999999999999999998888775443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.2e-24 Score=189.53 Aligned_cols=300 Identities=10% Similarity=0.082 Sum_probs=202.2
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeee---cCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKV---TGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~ 121 (364)
+..++|+|++ +++++.|+.|++||+.+++.....++ .+|...+.+++|+|||++++++ ..++.+.+||..+++.
T Consensus 64 ~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~ 143 (426)
T d1hzua2 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143 (426)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence 5678889864 55566789999999999876544443 2455667778888999987555 4789999999999988
Q ss_pred eeeeecCCCcE-----------EEEEeecCCCCEEEEee-CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEE
Q 040533 122 IRNLEGHDKRV-----------ATASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 122 ~~~~~~~~~~v-----------~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
...+..|...+ ..+.+++ ++..++... ..+.+.+++.............+...+..+.|+|++++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 222 (426)
T d1hzua2 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFM 222 (426)
T ss_dssp EEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEE
T ss_pred eEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEE
Confidence 87776554433 4445555 444333332 3344555555444433334446778899999999999887
Q ss_pred EEe-CCCeEEEEeCCCCCCCcceEEec--ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-------CeEEEEE
Q 040533 190 SGG-DDNLVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-------GTCIHSV 259 (364)
Q Consensus 190 ~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~~~~~~ 259 (364)
++. .+..+.+++...... +.... .+........+...+...+.......|+.+.+|+... ++....+
T Consensus 223 ~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l 299 (426)
T d1hzua2 223 TAANNSNKVAVIDSKDRRL---SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL 299 (426)
T ss_dssp EEETTCSEEEEEETTTTEE---EEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEE
T ss_pred eeeecccceeeeecccccE---EEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEE
Confidence 776 456788999776432 33222 2223333444444333333222223688888888754 3677777
Q ss_pred ecC-CCeEEEEEcCCccceeeeccCC-ccCCCCeEEEeeCCCCceeeec---------cccccceeEEeecCCCCEEEE-
Q 040533 260 DTK-AQICGLEWNRHHKEILSGHGFS-SSGDGQKLCLWKYPHMTKWGEL---------QHQTSRILELSQSPDGLTVVS- 327 (364)
Q Consensus 260 ~~~-~~v~~~~~~~~~~~l~~~~~~~-~~~~~~~i~i~d~~~~~~~~~~---------~~~~~~i~~i~~~~~~~~l~~- 327 (364)
..+ ..+..++|+|+++++++...+. .+..+++|++||+.+++...++ ..|...+.+++|||||++++.
T Consensus 300 ~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs 379 (426)
T d1hzua2 300 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 379 (426)
T ss_dssp ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEE
T ss_pred ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEE
Confidence 765 5689999999999999643221 2344789999999998876554 235566899999999997743
Q ss_pred E----eCCCcEEEEEeeCCCCCcceecc
Q 040533 328 A----AADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 328 ~----~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
+ +.+|.|+|||.++.+....+.++
T Consensus 380 ~~~~~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 380 VWNGKNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp ECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EecCCCCCCeEEEEECCCCeEEEEECCC
Confidence 2 46888999999998876666544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.1e-22 Score=168.00 Aligned_cols=276 Identities=10% Similarity=0.138 Sum_probs=191.5
Q ss_pred EEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeee---ecCCCcEEE
Q 040533 59 LAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNL---EGHDKRVAT 134 (364)
Q Consensus 59 ~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~---~~~~~~v~~ 134 (364)
++.+.++.|++|++.............|.+.+..++|+|||++|++++ .|+.|++|++........+ ..+...+..
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~ 87 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH 87 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceE
Confidence 455578999999997654434444446788999999999999996655 5899999999766433222 224456778
Q ss_pred EEeecCCCCEEEEeeC-CCcEEEEEcccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcce
Q 040533 135 ASWNHWNGHILTSGSQ-DKSIINHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGD-DNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~ 211 (364)
++|+| ++++|++++. ++.+.+|+....... ......+...+.++.++|+++++++++. +..+.+|+..........
T Consensus 88 l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (333)
T d1ri6a_ 88 ISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 166 (333)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceee
Confidence 99999 8998888875 668899988755432 2233456667888999999998887774 457899997654321111
Q ss_pred E---EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe----EEEEEe-------cCCCeEEEEEcCCccce
Q 040533 212 H---RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT----CIHSVD-------TKAQICGLEWNRHHKEI 277 (364)
Q Consensus 212 ~---~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~-------~~~~v~~~~~~~~~~~l 277 (364)
. ...........++|++++..++.+.. ..+...+++..... ...... .......++++++++++
T Consensus 167 ~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 167 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eceeeeeecCCCccEEEEeccceeEEeecc--ccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence 1 11123345678999999977777765 67778888765422 222221 12346778999999988
Q ss_pred eeeccCCccCCCCeEEEeeCCCCceeeecc---ccccceeEEeecCCCCEEEEEe-CCCcEEEEEeeCC
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTKWGELQ---HQTSRILELSQSPDGLTVVSAA-ADETLRFWEAFGP 342 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~~ 342 (364)
+... ..++.+.+|++.......... .....+.+++|+|||++|++++ .++.|++|++...
T Consensus 245 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 245 YACD-----RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 308 (333)
T ss_dssp EEEE-----TTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred eeec-----ccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence 7654 347889999887655444333 2345678899999999987765 4688999977653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=7.1e-22 Score=163.26 Aligned_cols=244 Identities=11% Similarity=0.106 Sum_probs=193.7
Q ss_pred EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEE
Q 040533 103 AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW 181 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 181 (364)
++++.|++|.+||+++++.++++... ..+..++|+| ++++| ++++.++.|.+||+.+++. +..+..+. .+..++|
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCce-eeeeeccc-ccccccc
Confidence 45668899999999999999988744 5678999999 88876 5677889999999987764 55555554 4688999
Q ss_pred cCCCCEEEE-EeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 182 SNEGNLLAS-GGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 182 ~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
++++..+++ +..++.+.+|+.... +....+. +.....++.|+|++..+++++. .++.+.+|+..+++....+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSN---TVAGTVK-TGKSPLGLALSPDGKKLYVTNN--GDKTVSVINTVTKAVINTVS 155 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccceeeecccccc---eeeeecc-ccccceEEEeecCCCeeeeeec--cccceeeeeccccceeeecc
Confidence 999986554 556778999997664 3345444 3456788999999988888765 78999999999999999998
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC---CCcEEEE
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA---DETLRFW 337 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~vw 337 (364)
....+..+.++|++..++++. ...+.+.+|+....+.......+ ..+..+++++++..++.++. ++.|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~ 229 (301)
T d1l0qa2 156 VGRSPKGIAVTPDGTKVYVAN-----FDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (301)
T ss_dssp CCSSEEEEEECTTSSEEEEEE-----TTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred cCCCceEEEeeccccceeeec-----ccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeee
Confidence 888899999999999888764 33678888888877776666544 45678999999998876643 4689999
Q ss_pred EeeCCCCCcceeccCCceeeeeeccC
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|+.+++....+.. ...+.+++|||.
T Consensus 230 D~~t~~~~~~~~~-~~~~~~va~spd 254 (301)
T d1l0qa2 230 DTGTNKITARIPV-GPDPAGIAVTPD 254 (301)
T ss_dssp ETTTTEEEEEEEC-CSSEEEEEECTT
T ss_pred ecCCCeEEEEEcC-CCCEEEEEEeCC
Confidence 9999887776654 456899999995
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.90 E-value=1.5e-20 Score=160.37 Aligned_cols=300 Identities=10% Similarity=-0.016 Sum_probs=205.1
Q ss_pred eecccCCCcc-EEEEE------eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----------CCc
Q 040533 48 SNMMDWGRNN-ILAIA------LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----------ASK 110 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~------~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~ 110 (364)
....+++|++ .+.+. ..+.|++||..+++....+. .+. ...++|+|||++|+++.. ++.
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~--~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~ 98 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN--GGF--LPNPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe--CCC--CccEEEcCCCCEEEEEeecCCcccccccceE
Confidence 5667778864 33322 23679999999998765443 433 337999999999988753 578
Q ss_pred EEEEecCCcceeeeeecCCCcE-------EEEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEE
Q 040533 111 LQLWDAETSKLIRNLEGHDKRV-------ATASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKW 181 (364)
Q Consensus 111 i~iw~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 181 (364)
|.+||..+++.+..+..+.... ..+.|+| +++.++... .++.+.+|+....+. . .+.....++.+
T Consensus 99 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~ 172 (373)
T d2madh_ 99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSD-D----QLLSSPTCYHI 172 (373)
T ss_pred EEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeE-E----EEeccceeEEE
Confidence 9999999999988877665443 3467788 666554443 456788888765442 2 23344678889
Q ss_pred cCCCCE-EEEEeCCCeEEEEeCCCCCCCcceEEe---cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE
Q 040533 182 SNEGNL-LASGGDDNLVHVWDHSKMSSSKCLHRF---RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 182 ~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 257 (364)
+|+++. +++.+.|+.+.+||............. .........+.+.+++ .++..+ .++.+.+|+..++....
T Consensus 173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~v~~~~~~~~~~~~ 248 (373)
T d2madh_ 173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPV---YSGKILQADISAAGATN 248 (373)
T ss_pred ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEec---CCceEEEEEcCCCeEEE
Confidence 998864 467889999999997765432211111 0112223445566655 333332 68899999988765432
Q ss_pred EEec-------------CCCeEEEEEcCCccceeeecc----CCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 258 SVDT-------------KAQICGLEWNRHHKEILSGHG----FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 258 ~~~~-------------~~~v~~~~~~~~~~~l~~~~~----~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
.... ......+++++++..++.... +.....++.+.+||..+++.+..+. +...+..++|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp 327 (373)
T d2madh_ 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ 327 (373)
T ss_pred EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC
Confidence 2211 123445677777776654321 1223457889999999999988875 456789999999
Q ss_pred CCCE--EEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 321 DGLT--VVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 321 ~~~~--l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
||+. +++++.|+.|++||+.+++.++.+..+....+.|++.+
T Consensus 328 DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 328 DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence 9984 46789999999999999999999988888888887654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=2.7e-21 Score=167.89 Aligned_cols=233 Identities=11% Similarity=0.019 Sum_probs=174.7
Q ss_pred CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee----eeeeccc
Q 040533 98 DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT----SRINAHT 173 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----~~~~~~~ 173 (364)
+.-++++.+.+|+|.|||.++++.+..+..+ ..+..++|+| +++++++++.|+.+.+||+.+++... .....|.
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 3334688889999999999999999999876 4699999999 99999999999999999998766321 2223466
Q ss_pred CcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCCcceEEecc-----------cccceeEEEEccCCCcEEEeecCCC
Q 040533 174 AEVCGLKWSNEGNLL-ASGGDDNLVHVWDHSKMSSSKCLHRFRD-----------HRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 174 ~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
+.+.+..|+|||++| ++++.++.|++||..+.+ .+..+.. +......+.++|++..++++.. .
T Consensus 109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~--~ 183 (432)
T d1qksa2 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE---PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK--E 183 (432)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC---EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET--T
T ss_pred CeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc---ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc--c
Confidence 667777888999976 678889999999987653 3443332 3345667889999988888775 7
Q ss_pred CCeEEEEECCCCeEE--EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-----ccccee
Q 040533 242 DGCIKIWNVQKGTCI--HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-----QTSRIL 314 (364)
Q Consensus 242 d~~i~i~d~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~i~ 314 (364)
++.|.+||..+.+.. ..+.....+..++++|+|++++++. ..++.+.++|..+++.+..+.. |.....
T Consensus 184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~-----~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~ 258 (432)
T d1qksa2 184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA-----NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 258 (432)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE-----GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEec-----cccceEEEeecccceEEEEeccCccccccCccc
Confidence 899999999887654 4556667789999999999888775 3377899999988877765432 333344
Q ss_pred EEeecCCCCEEEEEe-CCCcEEEEEeeCC
Q 040533 315 ELSQSPDGLTVVSAA-ADETLRFWEAFGP 342 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~-~dg~i~vw~~~~~ 342 (364)
...+...+...++.. .|+.|.+|+....
T Consensus 259 ~~~~~~~g~~~~~~~lg~~~v~~~~~~~~ 287 (432)
T d1qksa2 259 NFVHPTFGPVWATSHMGDDSVALIGTDPE 287 (432)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred ceecCCCCceecccccCCceEEecccccc
Confidence 445554555454443 3778888876544
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=2.4e-21 Score=163.21 Aligned_cols=260 Identities=8% Similarity=-0.025 Sum_probs=191.3
Q ss_pred EEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeee
Q 040533 93 ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRIN 170 (364)
Q Consensus 93 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~ 170 (364)
++|++++++|++++.+++|.+||+++++.+.++. .+...+.+++|+| +++++ +++..++.|.+||+.+++.. ..+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~-~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNT-FHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEE-EEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeee-eeec
Confidence 4689999999999999999999999999998887 3566788999999 88876 55668899999999987643 2222
Q ss_pred cc------cCcEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 171 AH------TAEVCGLKWSNEGNLLASGG------------DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 171 ~~------~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
.. ...+..++|+|||+++++++ .++.+.+||.........+.... ....+..+.+++++ .
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~ 157 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG-S 157 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS-C
T ss_pred ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-ccCceEEEEecCCC-E
Confidence 21 12356789999999888765 46778899876654333333221 23445667777766 4
Q ss_pred EEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeecc--------------------CCccCCCCeE
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG--------------------FSSSGDGQKL 292 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------~~~~~~~~~i 292 (364)
++++ ++.+.+|++.+++.+..+..+.....+.++|++..++.... ......+..+
T Consensus 158 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
T d1jmxb_ 158 LYVA-----GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232 (346)
T ss_dssp EEEE-----SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred EEEe-----CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence 5553 35689999999999999887777777788888776644321 0122335567
Q ss_pred EEeeCCCCceeee-ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 293 CLWKYPHMTKWGE-LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 293 ~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+|+..++..... ...+...+..+.+++++.+++.+.. +.|.+||..+++.+..+. +...+.+++|||.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~D 302 (346)
T d1jmxb_ 233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKK 302 (346)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSS
T ss_pred EEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCC
Confidence 8888887776544 4467778889999999988887664 579999999888776664 4567999999995
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.6e-20 Score=157.42 Aligned_cols=250 Identities=13% Similarity=0.106 Sum_probs=182.6
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecC--CCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeeeccc---
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGH--DKRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRINAHT--- 173 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~--- 173 (364)
+++++++.|++|.|||+++++.+..+..+ ...+.+++|+| +++++ ++++.++.|.+||+.+++. ......+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCcc
Confidence 58999999999999999999999888653 45678999999 88876 5667899999999998764 44443332
Q ss_pred --CcEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 174 --AEVCGLKWSNEGNLLASGG------------DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 174 --~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
..+..++|+|++++++++. .+..+.+||.... .....+. +...+..++|+|+++.+++.+
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~l~~~~-- 153 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFE-APRQITMLAWARDGSKLYGLG-- 153 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEE-CCSSCCCEEECTTSSCEEEES--
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC---eEEEecc-ccCCceEEEEcCCCCEEEEEc--
Confidence 2345789999999988776 3577888997664 3344444 445688999999998777642
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec------------------cCCccCCCCeEEEeeCCCCc
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH------------------GFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~~~~~~~~~~i~i~d~~~~~ 301 (364)
+.+.+||..+++....+..+.......+.+++..+.... .......++.+.+|+..++.
T Consensus 154 ---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (337)
T d1pbyb_ 154 ---RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp ---SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred ---CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence 447889999999988886554333333333333221110 01122336678999998887
Q ss_pred eeee-ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 302 KWGE-LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 302 ~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.... +..+...+..+.++|++.+++.+ ++.|++||+.+++.+..+. +...+.+++|||.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~d 290 (337)
T d1pbyb_ 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTD 290 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTT
T ss_pred EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCC
Confidence 6553 44566778889999999988766 5899999999988877664 5677899999985
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.1e-19 Score=153.68 Aligned_cols=281 Identities=11% Similarity=0.074 Sum_probs=186.7
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecCCC---
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGHDK--- 130 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~--- 130 (364)
++.|++||..+++...... .+ ....++|||||++|++.+ .++.|.+||+.+++.+..+..+..
T Consensus 27 ~~~v~v~D~~tg~~~~~~~--~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~ 102 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMID--GG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102 (355)
T ss_dssp SEEEEEEETTTTEEEEEEE--EC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred cCeEEEEECCCCcEEEEEE--CC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence 4579999999998765543 32 344799999999887643 478999999999998877654332
Q ss_pred ----cEEEEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccC-------cEEEEEEcCCCCEEEEEe-CCCe
Q 040533 131 ----RVATASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTA-------EVCGLKWSNEGNLLASGG-DDNL 196 (364)
Q Consensus 131 ----~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~d~~ 196 (364)
....++|+| +++.++.++ .+..+.+|+..+++. ...+..+.. ....+.+++++..++... .++.
T Consensus 103 ~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~ 180 (355)
T d2bbkh_ 103 LVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 180 (355)
T ss_dssp CBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred ecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcE-eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCe
Confidence 234578999 888777664 456889999987664 333332221 223345556555544432 3334
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE--EecC-----------C
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS--VDTK-----------A 263 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~-----------~ 263 (364)
+.+++...... .+...+....+.+++..++.+. .++.+++|++..++.... ...+ .
T Consensus 181 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 249 (355)
T d2bbkh_ 181 PEITHTEVFHP--------EDEFLINHPAYSQKAGRLVWPT---YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249 (355)
T ss_dssp CEEEECCCCSC--------TTSCBCSCCEEETTTTEEEEEB---TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC
T ss_pred EEEEecccccc--------eecceeeeccccCCCCeEEEec---CCCeEEEEecCCCcEEEEeccCCcccceEeeeeecc
Confidence 44444332211 1233455566777765555543 699999999988754321 1111 1
Q ss_pred CeEEEEEcCCccceeeecc----CCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC--EEEEEeCCCcEEEE
Q 040533 264 QICGLEWNRHHKEILSGHG----FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL--TVVSAAADETLRFW 337 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~----~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~vw 337 (364)
....+++++++..++.... .......+.|.+||..+++.+..+.. ...+.+++|+|||+ ++++++.|+.|++|
T Consensus 250 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~ 328 (355)
T d2bbkh_ 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIH 328 (355)
T ss_dssp SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred ceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEE
Confidence 2345888999888776532 11223356899999999999888764 45688999999998 45667789999999
Q ss_pred EeeCCCCCcceeccCCceeeeeecc
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
|..+++.+.++.++......+.+.+
T Consensus 329 D~~tg~~~~~i~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 329 DAESGEELRSVNQLGHGPQVITTAD 353 (355)
T ss_dssp ETTTCCEEEEECCCCSSCCEEECCC
T ss_pred ECCCCCEEEEEeCcCCCccEEEeCC
Confidence 9999999988877666555555543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=5.8e-18 Score=141.51 Aligned_cols=254 Identities=8% Similarity=0.059 Sum_probs=174.8
Q ss_pred EEEEEecCCcEEEEecCCcceeeee--ecCCCcEEEEEeecCCCCEEEEee-CCCcEEEEEcccCcceeee--eecccCc
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRNL--EGHDKRVATASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSR--INAHTAE 175 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~--~~~~~~~ 175 (364)
.+++++.|++|++|++.+...+..+ ..|.+.+..++|+| ++++|++++ .|+.|.+|++......... ...+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 3467779999999999765433322 25788999999999 898885554 5899999999865532221 2234455
Q ss_pred EEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 176 VCGLKWSNEGNLLASGGD-DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 176 v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
+..++|+|||++|++++. ++.+.+|+...... ........+...+.++.++|+++.++.... .+..+.+|+.....
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~--~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-VGVVDVVEGLDGCHSANISPDNRTLWVPAL--KQDRICLFTVSDDG 161 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-EEEEEEECCCTTBCCCEECTTSSEEEEEEG--GGTEEEEEEECTTS
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccc-eecccccCCCccceEEEeeecceeeecccc--ccceeeEEEeccCC
Confidence 778999999999998875 67889998665432 222333445667889999999987777765 67889999987654
Q ss_pred EEEEE-------ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee----eecc------ccccceeEEe
Q 040533 255 CIHSV-------DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW----GELQ------HQTSRILELS 317 (364)
Q Consensus 255 ~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~----~~~~------~~~~~i~~i~ 317 (364)
..... ........++|++++.+++... ...+...+++....... .... ........++
T Consensus 162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (333)
T d1ri6a_ 162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN-----ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 236 (333)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE-----TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred cceeeeceeeeeecCCCccEEEEeccceeEEeec-----cccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence 32211 1234568899999999887653 23566777776432211 1111 1234567789
Q ss_pred ecCCCCEEEEE-eCCCcEEEEEeeCCCCCcceec---cCCceeeeeeccC
Q 040533 318 QSPDGLTVVSA-AADETLRFWEAFGPSGSGDFVS---HLDGLLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~---~~~~v~~~~~sp~ 363 (364)
+++++++++.. ..++.+.+|++........... ....+.+++|||.
T Consensus 237 ~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spD 286 (333)
T d1ri6a_ 237 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS 286 (333)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT
T ss_pred EecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCC
Confidence 99999976655 5678899999987766554443 3456789999996
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.80 E-value=7.6e-17 Score=137.00 Aligned_cols=258 Identities=9% Similarity=-0.061 Sum_probs=181.5
Q ss_pred CCCCCceEEEEcCCCCEEEEEe-----cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEee----------
Q 040533 85 GEDDFPTSISWSQDAKTLAVGY-----MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGS---------- 149 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------- 149 (364)
.+..++.+++++|||+.+++.. ..+.|.+||.++++.+.++..+..+ .++|+| ++++|++++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~Sp-DG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRIAKGK 94 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcC-CCCEEEEEeecCCcccccc
Confidence 5678899999999999987652 3457999999999999988766544 789999 999988875
Q ss_pred CCCcEEEEEcccCcceeeeeecccCcE-------EEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcceEEecccccc
Q 040533 150 QDKSIINHDVRVSNNVTSRINAHTAEV-------CGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKCLHRFRDHRAA 220 (364)
Q Consensus 150 ~dg~i~~~d~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 220 (364)
.++.|.+||..+++. ......+.... ..+.|+++++.++... .++.+.+|+..... .. .+...
T Consensus 95 ~~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~---~~----~~~~~ 166 (373)
T d2madh_ 95 RTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS---DD----QLLSS 166 (373)
T ss_pred cceEEEEEECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe---EE----EEecc
Confidence 457899999998774 34343333322 4578888888665554 45678888865432 12 23344
Q ss_pred eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-------CCeEEEEEcCCccceeeeccCCccCCCCeEE
Q 040533 221 VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------AQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293 (364)
Q Consensus 221 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 293 (364)
..++.++|+++.++++.+ .|+.+.+|+...++........ .....+.+++++.+++.+. ++.+.
T Consensus 167 ~~~~~~s~~g~~~~v~~~--~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~ 237 (373)
T d2madh_ 167 PTCYHIHPGAPSTFYLLC--AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-------SGKIL 237 (373)
T ss_pred ceeEEEecCCCcEEEEEc--CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecC-------CceEE
Confidence 678899999988888876 8999999999988777655321 1234566777776666543 88899
Q ss_pred EeeCCCCceeee--cccc----------ccceeEEeecCCCCEE----------EEEeCCCcEEEEEeeCCCCCcceecc
Q 040533 294 LWKYPHMTKWGE--LQHQ----------TSRILELSQSPDGLTV----------VSAAADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 294 i~d~~~~~~~~~--~~~~----------~~~i~~i~~~~~~~~l----------~~~~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
+|+......... ...+ ......+++++++..+ ++...++.+.+||..+++.+..+. +
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~ 316 (373)
T d2madh_ 238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-L 316 (373)
T ss_pred EEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-C
Confidence 998877653321 1111 1223445666666544 445567789999999998877664 5
Q ss_pred CCceeeeeeccC
Q 040533 352 LDGLLSLKVSPI 363 (364)
Q Consensus 352 ~~~v~~~~~sp~ 363 (364)
...+.+++|||.
T Consensus 317 ~~~~~~~a~spD 328 (373)
T d2madh_ 317 GHDVDAISVAQD 328 (373)
T ss_pred CCCeeEEEECCC
Confidence 677899999985
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=4.5e-17 Score=137.38 Aligned_cols=260 Identities=11% Similarity=0.023 Sum_probs=170.9
Q ss_pred ecccCCCcc--EEEE----------EeCCeEEEEECCCCceeeeeeecC-----CCCCceEEEEcCCCCEEEEEe--cCC
Q 040533 49 NMMDWGRNN--ILAI----------ALGLELYLWKQENGEVQKLLKVTG-----EDDFPTSISWSQDAKTLAVGY--MAS 109 (364)
Q Consensus 49 ~~~~~~~~~--~~~~----------~~~~~i~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~--~dg 109 (364)
..++|+|++ ++++ ..++.|.+||..+++......... .......++|+|++++++++. .+.
T Consensus 50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 129 (355)
T d2bbkh_ 50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129 (355)
T ss_dssp CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence 357888875 3332 236789999999998766554321 123456789999999888765 456
Q ss_pred cEEEEecCCcceeeeeecCCCc-------EEEEEeecCCCCEEEE-eeCCCcEEEEEcccCcceeeeeecccCcEEEEEE
Q 040533 110 KLQLWDAETSKLIRNLEGHDKR-------VATASWNHWNGHILTS-GSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW 181 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 181 (364)
.+.+|+..+++.+..+..+... ...+.+++ ++..++. ...++.+.+++..... ..+...+....+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 202 (355)
T d2bbkh_ 130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR-DGSLAKVAFGTEGTPEITHTEVFH------PEDEFLINHPAY 202 (355)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET-TSCEEEEECCSSSCCEEEECCCCS------CTTSCBCSCCEE
T ss_pred eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcC-CCCEEEEEecCCCeEEEEeccccc------ceecceeeeccc
Confidence 8999999999988877654322 12233444 3333322 2223333333332221 123334455677
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc----------cccceeEEEEccCCCcEEEeec-------CCCCCe
Q 040533 182 SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD----------HRAAVKALAWCPYQFNVLASGG-------GTQDGC 244 (364)
Q Consensus 182 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~-------g~~d~~ 244 (364)
.+++..++.++.++.+++|++..... ..+..... .......+++++++..+++... ......
T Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T d2bbkh_ 203 SQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281 (355)
T ss_dssp ETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred cCCCCeEEEecCCCeEEEEecCCCcE-EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCe
Confidence 88888899999999999999876532 11111111 1223456888999877766532 012357
Q ss_pred EEEEECCCCeEEEEEecCCCeEEEEEcCCccce-eeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCC
Q 040533 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI-LSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
|.+||..+++.+..+..+..+.+++|+|+|+.+ ++.. +.++.|++||..+++.+.++..+......+.+.++
T Consensus 282 v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~-----~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 282 VVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS-----TGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE-----TTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEE-----CCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 999999999999998888889999999999853 3221 34899999999999999999877665566665544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.78 E-value=9.9e-17 Score=140.78 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=107.0
Q ss_pred cccCCCccEEEEEeCCeEEEEECCCCceeeee---eecCCCCCceEEEEcCCCCEEEEEec---------CCcEEEEecC
Q 040533 50 MMDWGRNNILAIALGLELYLWKQENGEVQKLL---KVTGEDDFPTSISWSQDAKTLAVGYM---------ASKLQLWDAE 117 (364)
Q Consensus 50 ~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~iw~~~ 117 (364)
.+.|.+++-+....++.+.+||+.+++...++ .+..|...|.++.|||||++|+.++. ++.+.|||++
T Consensus 21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~ 100 (470)
T d2bgra1 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (470)
T ss_dssp CCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC
Confidence 35677766555667889999999999875543 33456678999999999999998753 5678999999
Q ss_pred CcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec-----------------ccCcEEEEE
Q 040533 118 TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA-----------------HTAEVCGLK 180 (364)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----------------~~~~v~~~~ 180 (364)
+++. ..+..+...+..+.|+| +++.+|.. .++.+.+|+..++........+ ..+....+.
T Consensus 101 ~~~~-~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 101 KRQL-ITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp TTEE-CCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCcc-cccccCCcccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 8874 55777889999999999 99998885 5678999998877643222111 122345688
Q ss_pred EcCCCCEEEEEeCC
Q 040533 181 WSNEGNLLASGGDD 194 (364)
Q Consensus 181 ~~~~~~~l~~~~~d 194 (364)
|||||+.|+....|
T Consensus 178 wSPDGk~ia~~~~d 191 (470)
T d2bgra1 178 WSPNGTFLAYAQFN 191 (470)
T ss_dssp ECTTSSEEEEEEEE
T ss_pred ECCCCCccceeEec
Confidence 99999999987643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=3.7e-17 Score=138.84 Aligned_cols=280 Identities=11% Similarity=-0.006 Sum_probs=182.7
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecCCC----
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGHDK---- 130 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~---- 130 (364)
..|++||..+++...... .+.. ..++|+|||+.|++.+ .|+.|.+||..+++.+..+..+..
T Consensus 46 ~~~~~~d~~~~~~~~~~~--~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~ 121 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSL--GAFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEEETTTTEEEEEEE--ECTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred ceEEEEeCCCCcEEEEEe--CCCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec
Confidence 468888999998766554 3332 3689999999988764 367799999999998887764332
Q ss_pred ---cEEEEEeecCCCCEEEEee-CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 131 ---RVATASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 131 ---~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
....++|+| ++++|+++. .++.+.+||+.+.+. ......+..... +......++..+.||.+.++++....
T Consensus 122 ~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 122 VGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp BSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSC
T ss_pred ccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcE-eEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCc
Confidence 223589999 888887765 579999999987764 444433332211 11123456666777877777765443
Q ss_pred CCcce---EEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-------------CCeEEEEE
Q 040533 207 SSKCL---HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------------AQICGLEW 270 (364)
Q Consensus 207 ~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------------~~v~~~~~ 270 (364)
..... ..+..+...+....+.+++ ..+.+ ..+.+.+++...+......... .....+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 271 (368)
T d1mdah_ 197 AAAGIVGAQCTGAQNCSSQAAQANYPG-MLVWA----VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEEETTTT-EEEEC----BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred eeeeeeecccccccccceeecccccCc-EEEEe----cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEE
Confidence 21111 1122234455667778776 34443 3567777887665544322111 12345788
Q ss_pred cCCccceeeecc---CCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE--EEEEeCCCcEEEEEeeCCCCC
Q 040533 271 NRHHKEILSGHG---FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT--VVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 271 ~~~~~~l~~~~~---~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~--l~~~~~dg~i~vw~~~~~~~~ 345 (364)
++++..++.... .........|.+||..+++.+..+.. ...+.+++|+|||+. ++++..|+.|++||..+++.+
T Consensus 272 ~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred cCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 888877665421 11112245799999999999888764 457889999999973 456678899999999999988
Q ss_pred cceeccCCceeeeee
Q 040533 346 GDFVSHLDGLLSLKV 360 (364)
Q Consensus 346 ~~~~~~~~~v~~~~~ 360 (364)
..+.... ....|++
T Consensus 351 ~~i~~g~-~P~~l~~ 364 (368)
T d1mdah_ 351 SSVELDK-GPESLSV 364 (368)
T ss_dssp EECCCCS-CCCEEEC
T ss_pred EEEECCC-CCCEEEE
Confidence 8776432 2444443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=7.4e-15 Score=124.41 Aligned_cols=257 Identities=8% Similarity=-0.068 Sum_probs=168.4
Q ss_pred ecccCCCcc-EEEEEe-----------CCeEEEEECCCCceeeeeeecCC-----CCCceEEEEcCCCCEEEEEe-cCCc
Q 040533 49 NMMDWGRNN-ILAIAL-----------GLELYLWKQENGEVQKLLKVTGE-----DDFPTSISWSQDAKTLAVGY-MASK 110 (364)
Q Consensus 49 ~~~~~~~~~-~~~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~-~dg~ 110 (364)
..++|+|++ .++++. ++.|.+||..+++......++.+ ......++|+|||++|+++. .++.
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~ 147 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence 346788864 344332 56799999999987665554322 22345799999999998876 5789
Q ss_pred EEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee-----eeecccCcEEEEEEcCCC
Q 040533 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS-----RINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 111 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~ 185 (364)
+.+||+.+++....+..+.... +.|.....++..+.||.+.++++........ ....+...+....+.+++
T Consensus 148 v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 223 (368)
T d1mdah_ 148 AAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG 223 (368)
T ss_dssp EEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc
Confidence 9999999999988877654432 2232556777788899988888765543221 122333445566777777
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEecc----------cccceeEEEEccCCCcEEEeecC------CCCCeEEEEE
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFRD----------HRAAVKALAWCPYQFNVLASGGG------TQDGCIKIWN 249 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g------~~d~~i~i~d 249 (364)
..+.+. .+.+++++...... ........ .......++++|++..+++.... .....|.+||
T Consensus 224 ~~~~~~--~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D 300 (368)
T d1mdah_ 224 MLVWAV--ASSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp EEEECB--SSCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred EEEEec--CCCEEEEeecCCce-EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence 655544 34566666543221 10111100 11223457888888776665320 0124699999
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEee
Q 040533 250 VQKGTCIHSVDTKAQICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
..+++.+..+.....+..++|+|+|+. +++.. ..++.|++||..+++.+.+++.... ...|++
T Consensus 301 ~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~-----~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 301 ASVGQTSGPISNGHDSDAIIAAQDGASDNYANS-----AGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp SSSCCEEECCEEEEEECEEEECCSSSCEEEEEE-----TTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred CCCCcEeEEecCCCceeEEEECCCCCEEEEEEe-----CCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 999999988887778999999999975 33332 3489999999999999998875443 344544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.64 E-value=9.2e-15 Score=123.59 Aligned_cols=269 Identities=10% Similarity=0.017 Sum_probs=173.1
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeec----------------------------CCCCCceEEEEcCCCCEEEEEe-cC
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVT----------------------------GEDDFPTSISWSQDAKTLAVGY-MA 108 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~----------------------------~~~~~v~~~~~s~~~~~l~~~~-~d 108 (364)
+++++.+|.|.+|++.+++..+.+... .|.........+|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 345566899999999888765443210 1222334444578999986664 67
Q ss_pred CcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCC--EEEEeeCCC-----------------cEEEEEcccCcceeee
Q 040533 109 SKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGH--ILTSGSQDK-----------------SIINHDVRVSNNVTSR 168 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--~l~~~~~dg-----------------~i~~~d~~~~~~~~~~ 168 (364)
++|.++|+++++....+. .+......++|+| +++ +++..+++. .+..+|..+..... .
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~-q 171 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW-Q 171 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE-E
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE-E
Confidence 889999999998887665 3567899999999 776 444444332 12446665544322 2
Q ss_pred eecccCcEEEEEEcCCCCEEEEEeCCC-----------------------------------------eEEEEeCCCCCC
Q 040533 169 INAHTAEVCGLKWSNEGNLLASGGDDN-----------------------------------------LVHVWDHSKMSS 207 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------------------------~i~iwd~~~~~~ 207 (364)
... ......+.|+|+|+++++.+.+. .+.+++...
T Consensus 172 I~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~--- 247 (441)
T d1qnia2 172 VIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE--- 247 (441)
T ss_dssp EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS---
T ss_pred Eec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC---
Confidence 222 24467899999999888776432 223332221
Q ss_pred CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE------------EEEEecCCCeEEEEEcCCcc
Q 040533 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC------------IHSVDTKAQICGLEWNRHHK 275 (364)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------------~~~~~~~~~v~~~~~~~~~~ 275 (364)
...+..+... .....+.++|+|+++++++. .+++|.+||+.+... ....+..-.....+|+++|.
T Consensus 248 ~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~--~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~ 324 (441)
T d1qnia2 248 SEFTRYIPVP-KNPHGLNTSPDGKYFIANGK--LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324 (441)
T ss_dssp CSSEEEECCB-SSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred CceEEEEeCC-CCccCceECCCCCEEEEeCC--cCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce
Confidence 1234444433 33578999999999988876 899999999865221 11111122234568999987
Q ss_pred ceeeeccCCccCCCCeEEEeeCCC---------C-ceeeec-----cccccceeEEeecCCCCEEEEE---eCCCc----
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPH---------M-TKWGEL-----QHQTSRILELSQSPDGLTVVSA---AADET---- 333 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~---------~-~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~---~~dg~---- 333 (364)
...+... |..|..|++.. . ..+..+ .+|...+.+.+++|||++|+++ |.|..
T Consensus 325 ~yts~~~------ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g 398 (441)
T d1qnia2 325 AYTTLFI------DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVG 398 (441)
T ss_dssp EEEEETT------TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCS
T ss_pred EEEcccc------cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCCC
Confidence 6655533 99999999731 1 122233 4777778888999999999999 55543
Q ss_pred ------EEEEEeeC
Q 040533 334 ------LRFWEAFG 341 (364)
Q Consensus 334 ------i~vw~~~~ 341 (364)
-.+.|+..
T Consensus 399 ~~~~~~~q~~~i~~ 412 (441)
T d1qnia2 399 PLHPENDQLIDISG 412 (441)
T ss_dssp SSCCEEEEEEECSS
T ss_pred CCCCccceeEEecC
Confidence 46677764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.57 E-value=3.5e-12 Score=107.23 Aligned_cols=282 Identities=8% Similarity=-0.004 Sum_probs=166.6
Q ss_pred EEEEEe--CCeEEEE--ECCCCceeeeeee-cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee--ecCCC
Q 040533 58 ILAIAL--GLELYLW--KQENGEVQKLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL--EGHDK 130 (364)
Q Consensus 58 ~~~~~~--~~~i~iw--~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~ 130 (364)
++.++. .+.|+.+ |.++++...+... ......+..|+|+|++++|.++. .+.+..|.+.....+... .....
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCC
Confidence 555543 4566554 4555554332221 13455577899999999998875 467888877643222221 11223
Q ss_pred cEEEEEeecCCCCE--EEEee-CCCcEEEEEcccCcc------------eee----eeecccCcEEEEEEcCCCCEEEEE
Q 040533 131 RVATASWNHWNGHI--LTSGS-QDKSIINHDVRVSNN------------VTS----RINAHTAEVCGLKWSNEGNLLASG 191 (364)
Q Consensus 131 ~v~~~~~~~~~~~~--l~~~~-~dg~i~~~d~~~~~~------------~~~----~~~~~~~~v~~~~~~~~~~~l~~~ 191 (364)
....+++++ +++. +++.. ..+.|..+.+..... ... ........+.++.|+|+|++++++
T Consensus 84 ~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 84 HPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence 345677777 6663 33222 234555544322111 000 011122346899999999988887
Q ss_pred eC-CCeEEEEeCCCCCCCcceEEec--ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE--EEE---Eec--
Q 040533 192 GD-DNLVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC--IHS---VDT-- 261 (364)
Q Consensus 192 ~~-d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~---~~~-- 261 (364)
+. ...|.+|+.............. ......+.++|+|+++.++++.. .+++|.+|++..++. +.. ...
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc--CCCEEEEEEecCCCceEEEEeeeecccc
Confidence 64 4578888765432211122211 23456788999999988888765 789999999876532 221 211
Q ss_pred -------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec------cccccceeEEeecC-C
Q 040533 262 -------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL------QHQTSRILELSQSP-D 321 (364)
Q Consensus 262 -------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~------~~~~~~i~~i~~~~-~ 321 (364)
......+.++|+|++++++...........|..|++.....+... .........++++| +
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred ccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCC
Confidence 012457899999999988753221222445777877654333221 12234567899998 8
Q ss_pred CCEEEEE-eCCCcEEEEEeeCCC
Q 040533 322 GLTVVSA-AADETLRFWEAFGPS 343 (364)
Q Consensus 322 ~~~l~~~-~~dg~i~vw~~~~~~ 343 (364)
|++|+++ ..++.|.+|++....
T Consensus 321 G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 321 DEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTE
T ss_pred CCEEEEEeCCCCeEEEEEEeCCc
Confidence 9988776 467899999987654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.57 E-value=3.1e-13 Score=114.22 Aligned_cols=252 Identities=7% Similarity=0.027 Sum_probs=167.0
Q ss_pred EEEEecCCcEEEEecCCcceeeeeec------------------------------CCCcEEEEEeecCCCCEEEEe-eC
Q 040533 102 LAVGYMASKLQLWDAETSKLIRNLEG------------------------------HDKRVATASWNHWNGHILTSG-SQ 150 (364)
Q Consensus 102 l~~~~~dg~i~iw~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~l~~~-~~ 150 (364)
+++|+.+|.|.+|++.+++.++++.- |.........+| +|++|++. ..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCC
Confidence 56777899999999999887776521 233445555678 88887665 46
Q ss_pred CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC--EEEEEeCCC-----------------eEEEEeCCCCCCCcce
Q 040533 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN--LLASGGDDN-----------------LVHVWDHSKMSSSKCL 211 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~-----------------~i~iwd~~~~~~~~~~ 211 (364)
+..|.++|+.+.+........+...+..++|+|+++ +++..+++. .+..+|..+.. ..
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~---v~ 169 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD---VA 169 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS---EE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce---ee
Confidence 779999999987643322234567899999999988 454444432 12346654432 23
Q ss_pred EEecccccceeEEEEccCCCcEEEeecCC--------------------------------------CCCeEEEEECCCC
Q 040533 212 HRFRDHRAAVKALAWCPYQFNVLASGGGT--------------------------------------QDGCIKIWNVQKG 253 (364)
Q Consensus 212 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~--------------------------------------~d~~i~i~d~~~~ 253 (364)
.++.. .+....+.++|+|+++++++.++ .++.+.+++....
T Consensus 170 ~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~ 248 (441)
T d1qnia2 170 WQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES 248 (441)
T ss_dssp EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred EEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence 33332 34567899999998887775311 1345556656666
Q ss_pred eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee--------eeccccc---cceeEEeecCCC
Q 040533 254 TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW--------GELQHQT---SRILELSQSPDG 322 (364)
Q Consensus 254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~--------~~~~~~~---~~i~~i~~~~~~ 322 (364)
+.+..+..+.....+.++|+|++++++. ..+++|.+||+.+.... ..+.++. -.....+|+++|
T Consensus 249 ~v~~~IPvgksPhGv~vSPDGkyl~~~~-----~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g 323 (441)
T d1qnia2 249 EFTRYIPVPKNPHGLNTSPDGKYFIANG-----KLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG 323 (441)
T ss_dssp SSEEEECCBSSCCCEEECTTSCEEEEEC-----TTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred ceEEEEeCCCCccCceECCCCCEEEEeC-----CcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence 6777777777788999999999988764 34899999998653321 1111111 123456899999
Q ss_pred CEEEEEeCCCcEEEEEeeCC------CC----Ccce-----eccCCceeeeeeccC
Q 040533 323 LTVVSAAADETLRFWEAFGP------SG----SGDF-----VSHLDGLLSLKVSPI 363 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~------~~----~~~~-----~~~~~~v~~~~~sp~ 363 (364)
..+.+...|..|..|++... .. ...+ .+|...+.+.+++|.
T Consensus 324 ~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pd 379 (441)
T d1qnia2 324 NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD 379 (441)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCC
Confidence 88888899999999997521 11 1111 477777777777774
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=4e-11 Score=96.28 Aligned_cols=240 Identities=13% Similarity=0.117 Sum_probs=152.0
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC---cEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK---SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.|.|.+ |...+.+..+...+...+||| +|+.||...... .+.+.+..... ...+..+........|+|+|+
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSS
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCC
Confidence 57787876 444444555677889999999 999888665433 35555655444 445556778888999999999
Q ss_pred EEEEEeC-CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCeEEEEEecCC
Q 040533 187 LLASGGD-DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 187 ~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~ 263 (364)
.++.... ++...++...... .................+++++..++.+.. .++ .|...++..+..........
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~ 171 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGRPQVYKVNINGGAPQRITWEGS 171 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTT--CCEEECCCCSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCCEECCCSSS
T ss_pred eeeEeeecCCccceeeccccc--ccceeeeeccccccccccccccccceeccc--ccCCceEeeeecccccceeeecccc
Confidence 8887653 2222222221111 112222223344455667777766666654 344 56777777665554444556
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC---CCcEEEEEee
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA---DETLRFWEAF 340 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~vw~~~ 340 (364)
......|+|+++.++....- .....+.+.+...+.. ....+........|||||+.|+-.+. ...|+++++.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~---~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 172 QNQDADVSSDGKFMVMVSSN---GGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp EEEEEEECTTSSEEEEEEEC---SSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccccccccceeEEEeec---CCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 67788999999998876421 1123455555554443 33334455678899999998876553 3468889987
Q ss_pred CCCCCcceeccCCceeeeeeccC
Q 040533 341 GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+.. ..+....+.+...+|||.
T Consensus 247 g~~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 247 GRFK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp SCCE-EECCCSSSEEEEEEECCC
T ss_pred CCCE-EEEeCCCCcEEeEEeCCC
Confidence 6654 445555777889999996
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.1e-10 Score=91.87 Aligned_cols=242 Identities=12% Similarity=0.055 Sum_probs=153.5
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC---cEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS---KLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|+|.|........+.. +...+.+.+|||||+.||...... .+.+.+...+... .+..+........|+| ++
T Consensus 20 ~l~i~d~dG~~~~~l~~---~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp-dg 94 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DG 94 (269)
T ss_dssp EEEEEETTSCSCEEEEE---ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TS
T ss_pred EEEEEcCCCCCcEEEec---CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecC-CC
Confidence 68898988776655543 356688999999999999875433 4667776655543 4455778888999999 78
Q ss_pred CEEEEee-CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE-eCCC--eEEEEeCCCCCCCcceEEecccc
Q 040533 143 HILTSGS-QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG-GDDN--LVHVWDHSKMSSSKCLHRFRDHR 218 (364)
Q Consensus 143 ~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~ 218 (364)
..++... .++...++.......................+++++..++.. ..++ .|...++.... ........
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~----~~~~~~~~ 170 (269)
T d2hqsa1 95 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWEG 170 (269)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCSS
T ss_pred CeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc----ceeeeccc
Confidence 7776654 344433433333332233333444555566777777655444 3444 45555554432 23333455
Q ss_pred cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 219 AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 219 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
.......|+|++..++..........+.+.+...+.. .............|+|+|+.|+.... -+....|+++++.
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~---~~~~~~l~~~~~d 246 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSS---QGMGSVLNLVSTD 246 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEE---ETTEEEEEEEETT
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEc---CCCCcEEEEEECC
Confidence 6677889999998887776511223455556555543 33344556678899999999875432 1235678999997
Q ss_pred CCceeeeccccccceeEEeecCC
Q 040533 299 HMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 299 ~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
.+.. ..+....+.+...+|||-
T Consensus 247 g~~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 247 GRFK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp SCCE-EECCCSSSEEEEEEECCC
T ss_pred CCCE-EEEeCCCCcEEeEEeCCC
Confidence 6654 455556677888999983
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.49 E-value=1.3e-12 Score=114.14 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=104.8
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-----cCCCcEEEEEeecCCCCEEEEeeC---------CCcEEE
Q 040533 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-----GHDKRVATASWNHWNGHILTSGSQ---------DKSIIN 156 (364)
Q Consensus 91 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~~ 156 (364)
..+.|.++++++.. .++.+.+||+.+++....+. .|...|.++.|+| ++++|+.++. ++.+.+
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEE
Confidence 46789999987764 57889999999998765444 3557899999999 9999888753 567889
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE------ecc---------cccce
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR------FRD---------HRAAV 221 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~---------~~~~v 221 (364)
||+.+++ ...+..+...+..+.|||||+.+|... ++.+++|+...+...+.... +.+ ..+..
T Consensus 97 ~d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~ 173 (470)
T d2bgra1 97 YDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (470)
T ss_dssp EETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EECCCCc--ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence 9998765 455777889999999999999999865 67899999876543211110 001 12334
Q ss_pred eEEEEccCCCcEEEee
Q 040533 222 KALAWCPYQFNVLASG 237 (364)
Q Consensus 222 ~~~~~~~~~~~~~~~~ 237 (364)
..+.|+|+|+.++...
T Consensus 174 ~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 174 SALWWSPNGTFLAYAQ 189 (470)
T ss_dssp BCEEECTTSSEEEEEE
T ss_pred cccEECCCCCccceeE
Confidence 6688999998766654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.43 E-value=3.6e-10 Score=92.52 Aligned_cols=240 Identities=8% Similarity=0.053 Sum_probs=155.0
Q ss_pred CCceEEEEcCCCCEEEEEec-------CCcEEEEecCCcceeeeeec----CCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 88 DFPTSISWSQDAKTLAVGYM-------ASKLQLWDAETSKLIRNLEG----HDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
.....++|.++|++.++... +|+|..||.+++........ ....-..++|.+ +++.++++.....+..
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEE
Confidence 34678899999997776432 46799999887765433221 112356799999 8888887777777888
Q ss_pred EEcccCcceeeeeeccc---CcEEEEEEcCCCCEEEEEeC---------------CCeEEEEeCCCCCCCcceEEecccc
Q 040533 157 HDVRVSNNVTSRINAHT---AEVCGLKWSNEGNLLASGGD---------------DNLVHVWDHSKMSSSKCLHRFRDHR 218 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~ 218 (364)
.+............... ...+.+++.++|++.++-.. .|.|..++... + ...+...-
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg----~-~~~~~~~~ 171 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----Q-MIQVDTAF 171 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----C-EEEEEEEE
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC----c-eeEeeCCc
Confidence 88765432211111111 13577999999987776421 23454444321 1 22222223
Q ss_pred cceeEEEEccCCC----cEEEeecCCCCCeEEEEECCCCeEEEE---E---ec--CCCeEEEEEcCCccceeeeccCCcc
Q 040533 219 AAVKALAWCPYQF----NVLASGGGTQDGCIKIWNVQKGTCIHS---V---DT--KAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 219 ~~v~~~~~~~~~~----~~~~~~~g~~d~~i~i~d~~~~~~~~~---~---~~--~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
...+.++|+|++. .++++.. ..+.|..||+.....+.. + .. ......+++..+|+..++...
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~---- 245 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG---- 245 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET----
T ss_pred ceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC----
Confidence 3446789988764 3666544 688899998754322211 1 11 123567999999998777644
Q ss_pred CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEE-EEEeCCCcEEEEEeeC
Q 040533 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTV-VSAAADETLRFWEAFG 341 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~vw~~~~ 341 (364)
.+.|.+||...++.+..+..+....++++|.|+++.| ++.+.+|.|...++..
T Consensus 246 --~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 246 --SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp --TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred --CCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 7899999998888777776666778999999999755 5566778777777654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=2.1e-10 Score=91.42 Aligned_cols=237 Identities=7% Similarity=-0.009 Sum_probs=148.0
Q ss_pred CCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 87 DDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
.-....++++++|+..++.. ..+.+..++...................+++++ +++++++....+.+++++-.....
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~- 90 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT- 90 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE-
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee-
Confidence 34568999999999666554 456777776554332222222223456788998 888877776666666655433322
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
.... .......++++.++++++++-.....+..++...... ..... ........+++++++. ++++.. .++.|
T Consensus 91 ~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--~~~~~-~~~~~p~~i~~~~~g~-~~v~~~--~~~~i 163 (260)
T d1rwia_ 91 VLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVLPF-TGLNDPDGVAVDNSGN-VYVTDT--DNNRV 163 (260)
T ss_dssp ECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--EECCC-CSCCSCCEEEECTTCC-EEEEEG--GGTEE
T ss_pred eeee-eeeeecccccccccceeEeecccccccccccccccee--eeeee-cccCCcceeeecCCCC-Eeeecc--ccccc
Confidence 2222 2235578999999998887776677787777544221 11111 1223457899999885 555544 57889
Q ss_pred EEEECCCCeEEEEE-ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE
Q 040533 246 KIWNVQKGTCIHSV-DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT 324 (364)
Q Consensus 246 ~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 324 (364)
..+|.......... ..-.....++++++|.++++... .+.|..++.............-.....|+++++|.+
T Consensus 164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~------~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l 237 (260)
T d1rwia_ 164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTV 237 (260)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT------TTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCE
T ss_pred cccccccceeeeeeccccCCCccceeeeeeeeeeeecC------CCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCE
Confidence 99998765433322 22355788999999987766533 677888876544322222223345689999999988
Q ss_pred EEEEeCCCcEEEEE
Q 040533 325 VVSAAADETLRFWE 338 (364)
Q Consensus 325 l~~~~~dg~i~vw~ 338 (364)
+++-..+++|+.++
T Consensus 238 ~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 238 YVADRGNDRVVKLT 251 (260)
T ss_dssp EEEEGGGTEEEEEC
T ss_pred EEEECCCCEEEEEe
Confidence 77766677666554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.42 E-value=1.7e-10 Score=94.22 Aligned_cols=228 Identities=9% Similarity=0.033 Sum_probs=155.6
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 168 (364)
.+..++++|||+++++...+++|..++.. ++ ...+......+.+++|.| +++++++...++.+..++..........
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceee
Confidence 57789999999999998889999888855 33 334445677899999999 9999999888888888887654432222
Q ss_pred ee--cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec---------ccccceeEEEEccCCCcEEEee
Q 040533 169 IN--AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR---------DHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 169 ~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
+. ......+.+++.++++++++.+.++.+..+|...... .+.... ........+.+.. ..++++.
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~ 181 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG--SIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSN 181 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE--EEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEE
T ss_pred ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc--eeEecCCccceeeccCcccccccccccC--Cceeeec
Confidence 22 2345688999999999888888888888888765321 011110 1112344566543 4666665
Q ss_pred cCCCCCeEEEEECCCCeEE---EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc-eeeeccccccce
Q 040533 238 GGTQDGCIKIWNVQKGTCI---HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT-KWGELQHQTSRI 313 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i 313 (364)
. ..+.|..++....... ...........++++++|.+.++... ++.|..++..... .+......-...
T Consensus 182 ~--~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~------~~~V~~i~p~G~~~~~~~~~~~~~~p 253 (302)
T d2p4oa1 182 T--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI------YNSVVRIAPDRSTTIIAQAEQGVIGS 253 (302)
T ss_dssp T--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT------TCCEEEECTTCCEEEEECGGGTCTTE
T ss_pred C--CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC------CCcEEEECCCCCEEEEEecCCCCCCc
Confidence 5 7888998887654322 22233455678999999987776543 7888888765332 233333344567
Q ss_pred eEEee---cCCCCEEEEEeCC
Q 040533 314 LELSQ---SPDGLTVVSAAAD 331 (364)
Q Consensus 314 ~~i~~---~~~~~~l~~~~~d 331 (364)
++++| ++|++.|+.++..
T Consensus 254 t~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 254 TAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEEECCSTTTTTEEEEEECT
T ss_pred eEEEEcCCCCCCCEEEEECCC
Confidence 89999 6788888766543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.40 E-value=3.1e-09 Score=85.48 Aligned_cols=238 Identities=14% Similarity=0.223 Sum_probs=162.0
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC------CCcEEEEEeecCCCCEEEEe-eCCCcEEEEEccc
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH------DKRVATASWNHWNGHILTSG-SQDKSIINHDVRV 161 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~ 161 (364)
....++++++++.+++-..+..|++||.+ ++.+..+... ......+++.+..+..+++. +.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 47899999999988887778899999965 6666655321 12344566665334444433 345567777654
Q ss_pred Ccceeeee-ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe--cccccceeEEEEccCCCcEEEeec
Q 040533 162 SNNVTSRI-NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF--RDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 162 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
+.. ...+ .........+++.+++.++++....+.+.+++... +.+..+ ..+......+++.+++ .++++..
T Consensus 102 g~~-~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g----~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~ 175 (279)
T d1q7fa_ 102 GQF-VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDN 175 (279)
T ss_dssp SCE-EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSEEEEEECSSS-EEEEEEG
T ss_pred ccc-eeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC----ceeecccccccccccceeeeccce-eEEeeec
Confidence 332 3322 23445678899999999888877778888887432 334443 2345567788999888 5666654
Q ss_pred CCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc--ccce
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ--TSRI 313 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i 313 (364)
..+.|.+||. +++.+.++... .....++++++|+.+++-. ..+..|.+|+ .+++.+..+... ....
T Consensus 176 --~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~-----~~~~~v~~f~-~~G~~~~~~~~~~~~~~p 246 (279)
T d1q7fa_ 176 --RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-----HNNFNLTIFT-QDGQLISALESKVKHAQC 246 (279)
T ss_dssp --GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-----SSSCEEEEEC-TTSCEEEEEEESSCCSCE
T ss_pred --cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEEC-----CCCcEEEEEC-CCCCEEEEEeCCCCCCCE
Confidence 6889999996 56677777533 3478999999998766532 1245799998 467777666432 2357
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
..+++.|+|.++ +++.++.|++|+.....+
T Consensus 247 ~~vav~~dG~l~-V~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 247 FDVALMDDGSVV-LASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEEEETTTEEE-EEETTTEEEEEECSCCCC
T ss_pred eEEEEeCCCcEE-EEeCCCeEEEEEeeeecC
Confidence 899999999754 456789999999876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=8e-10 Score=95.49 Aligned_cols=309 Identities=12% Similarity=0.106 Sum_probs=173.0
Q ss_pred cCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecC-CCCCceEEEEcCCCCEEEEEe---------cCCcEEEEecCCcc
Q 040533 52 DWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTG-EDDFPTSISWSQDAKTLAVGY---------MASKLQLWDAETSK 120 (364)
Q Consensus 52 ~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~---------~dg~i~iw~~~~~~ 120 (364)
.|.+++ ++.-..+|.|.+||+.+++...+..... ....+....||||+++++... ..+.+.++|+.++.
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence 354432 3333456789999999887654443322 234677889999999988764 24678999999886
Q ss_pred eeeee--ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCc-----------------EEEEEE
Q 040533 121 LIRNL--EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE-----------------VCGLKW 181 (364)
Q Consensus 121 ~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-----------------v~~~~~ 181 (364)
..... ......+....|+| +++.+|-.. ++.|.+.+...+........+.... -.++.|
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred eeeccCccCCccccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 54332 22344566789999 888887765 5678888876554322222222111 246789
Q ss_pred cCCCCEEEEEeC-CCe---------------------------------EEEEeCCCCCCCcceE---EecccccceeEE
Q 040533 182 SNEGNLLASGGD-DNL---------------------------------VHVWDHSKMSSSKCLH---RFRDHRAAVKAL 224 (364)
Q Consensus 182 ~~~~~~l~~~~~-d~~---------------------------------i~iwd~~~~~~~~~~~---~~~~~~~~v~~~ 224 (364)
||||++||.... +.. +.++|+.......... ........+..+
T Consensus 181 SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~ 260 (465)
T d1xfda1 181 SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV 260 (465)
T ss_dssp CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence 999999998642 222 3333433221100000 001112246778
Q ss_pred EEccCCCcEEEeec-CCCCCeEEEEECCCCeEEEEEec--CCC----eEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 225 AWCPYQFNVLASGG-GTQDGCIKIWNVQKGTCIHSVDT--KAQ----ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 225 ~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~~~~~--~~~----v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.|.|+++.++.... ......+.++|..++++...+.. ... -....|+++|+.++....... +.-+.++.+++
T Consensus 261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~-~g~~~ly~~~~ 339 (465)
T d1xfda1 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ-GGRGKFYHITV 339 (465)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC-SSSSCEEEEEE
T ss_pred EEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeee-cccCceEEEEe
Confidence 99998854444332 11224688999999987655532 222 245689999986543210000 11233444432
Q ss_pred C------CCceeeeccccccceeEE-eecCCCCEEE-EEeCCC--cEEEEEee--CCCCCcce---eccCCceeeeeecc
Q 040533 298 P------HMTKWGELQHQTSRILEL-SQSPDGLTVV-SAAADE--TLRFWEAF--GPSGSGDF---VSHLDGLLSLKVSP 362 (364)
Q Consensus 298 ~------~~~~~~~~~~~~~~i~~i-~~~~~~~~l~-~~~~dg--~i~vw~~~--~~~~~~~~---~~~~~~v~~~~~sp 362 (364)
. .++.+..+....-.|..+ .|+++++.|+ ++..++ .-.+|.+. .......+ ........++.|||
T Consensus 340 ~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~ 419 (465)
T d1xfda1 340 SSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSH 419 (465)
T ss_dssp ECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred ccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECC
Confidence 1 233344444444456665 6888877654 454432 33455554 33222222 23455677889998
Q ss_pred C
Q 040533 363 I 363 (364)
Q Consensus 363 ~ 363 (364)
.
T Consensus 420 ~ 420 (465)
T d1xfda1 420 S 420 (465)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.36 E-value=6.5e-09 Score=85.20 Aligned_cols=227 Identities=8% Similarity=0.070 Sum_probs=150.0
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC----CcEEEEEcccCcc
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD----KSIINHDVRVSNN 164 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~ 164 (364)
.+..++|.++|++.++-..++.|..|+.++++....+.........+++++ +++++++...+ +.+...+......
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence 456899999999777777889999999887766666555666789999999 88888775432 3344444443331
Q ss_pred eeeeee--cccCcEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 165 VTSRIN--AHTAEVCGLKWSNEGNLLASGGD------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 165 ~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
..... .-....+.+++.++|++.++... .+.+..++... ..+..+...-...+.++|+|+++.++++
T Consensus 120 -~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg----~~~~~~~~~~~~pnGia~s~dg~~lyva 194 (319)
T d2dg1a1 120 -QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF----RTVTPIIQNISVANGIALSTDEKVLWVT 194 (319)
T ss_dssp -EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS----CCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred -eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc----ceeEEEeeccceeeeeeeccccceEEEe
Confidence 12111 11245788999999986665432 23355555332 1233332333445789999999878777
Q ss_pred ecCCCCCeEEEEECCCC-eEEE----EE----ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 237 GGGTQDGCIKIWNVQKG-TCIH----SV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~-~~~~----~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
-. ..+.|..|++... .... .. ........+++.++|++.++... .+.|.+||. .++.+.++.
T Consensus 195 d~--~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~------~g~V~~~~p-~G~~l~~i~ 265 (319)
T d2dg1a1 195 ET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------QGRVLVFNK-RGYPIGQIL 265 (319)
T ss_dssp EG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------TTEEEEECT-TSCEEEEEE
T ss_pred cc--cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC------CCEEEEECC-CCcEEEEEe
Confidence 65 6889999997642 1111 11 11233578999999997777644 899999994 788877764
Q ss_pred c------cccceeEEeecCCCCEEEEEeC
Q 040533 308 H------QTSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 308 ~------~~~~i~~i~~~~~~~~l~~~~~ 330 (364)
. +...+++++|.+++..+++.+.
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 266 IPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 2 3345789999998877766543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.29 E-value=2.4e-09 Score=87.26 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=146.6
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+.+..+.. ...+..+++.| +++++++...+++|..++.... ...+......+.+++|+++|+++++...++.+..
T Consensus 19 ~v~~~~p~-~~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~ 93 (302)
T d2p4oa1 19 KIITSFPV-NTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPV 93 (302)
T ss_dssp EEEEEECT-TCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred cEEEECCC-CCCcCCEEECC-CCCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEE
Confidence 33444432 23578899999 9999999999999988886533 3334456678999999999999998888888888
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-----------CCCeEEE
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-----------KAQICGL 268 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----------~~~v~~~ 268 (364)
++......................+++.+++ .++++.. .++.+..+|...+........ ......+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi 170 (302)
T d2p4oa1 94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 170 (302)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred EEecccccceeeccccCCccccceeEEccCC-CEEeecc--ccccceeeeccCCcceeEecCCccceeeccCcccccccc
Confidence 8765432211111111234567889999998 5566544 688899999887765433321 1234556
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC-C
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG-S 345 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~-~ 345 (364)
.++.+ .++.+. ...+.|+.++........... ........++++++|+++++...++.|..++...... +
T Consensus 171 ~~~~~--~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~ 243 (302)
T d2p4oa1 171 KRFGN--FLYVSN-----TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTII 243 (302)
T ss_dssp EEETT--EEEEEE-----TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEE
T ss_pred cccCC--ceeeec-----CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEE
Confidence 66543 333332 237888888876654333221 1233456899999999888888889888886543211 1
Q ss_pred cceeccCCceeeeeec
Q 040533 346 GDFVSHLDGLLSLKVS 361 (364)
Q Consensus 346 ~~~~~~~~~v~~~~~s 361 (364)
..........++++|.
T Consensus 244 ~~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 244 AQAEQGVIGSTAVAFG 259 (302)
T ss_dssp ECGGGTCTTEEEEEEC
T ss_pred EecCCCCCCceEEEEc
Confidence 2222334557888883
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.26 E-value=4.4e-09 Score=83.61 Aligned_cols=242 Identities=7% Similarity=0.038 Sum_probs=145.7
Q ss_pred eeCCCCCCCcceeecccCCCcc-EEEEE--eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEE
Q 040533 36 ILDAPNLRNDYYSNMMDWGRNN-ILAIA--LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQ 112 (364)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 112 (364)
+++...+........+++++++ +..+. ..+.+..++..+... ..... ........++++++++++++...++.++
T Consensus 4 ~~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~-~~~~~-~~~~~p~gvav~~~g~i~v~d~~~~~i~ 81 (260)
T d1rwia_ 4 VLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPF-NGLYQPQGLAVDGAGTVYVTDFNNRVVT 81 (260)
T ss_dssp ECCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE-EECCC-CSCCSCCCEEECTTCCEEEEETTTEEEE
T ss_pred EEecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE-EEecc-CCccCceEEEEcCCCCEEEeeeeeceee
Confidence 4444443333334556666653 33332 235666665544332 12222 2234568899999999887776666677
Q ss_pred EEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe
Q 040533 113 LWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 113 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
+++-.+...+.... .......+++.+ +++++++-..+..+..++........... .-......++++++++++++..
T Consensus 82 ~~~~~~~~~~~~~~-~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~~~v~~~ 158 (260)
T d1rwia_ 82 LAAGSNNQTVLPFD-GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDT 158 (260)
T ss_dssp ECTTCSCCEECCCC-SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCCEEEEEG
T ss_pred eeeeccceeeeeee-eeeecccccccc-cceeEeeccccccccccccccceeeeeee-cccCCcceeeecCCCCEeeecc
Confidence 76655554443333 235578999998 88888777667777777765443222222 2223457899999999888888
Q ss_pred CCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--CCCeEEEE
Q 040533 193 DDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--KAQICGLE 269 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~ 269 (364)
.++.|..+|..... ...+ .........+++++++ .++++.. ..+.|..++...... ..+.. -.....|+
T Consensus 159 ~~~~i~~~d~~~~~----~~~~~~~~~~~p~gi~~d~~g-~l~vsd~--~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~ 230 (260)
T d1rwia_ 159 DNNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTS-TVLPFTGLNTPLAVA 230 (260)
T ss_dssp GGTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTC-CEEEEET--TTTEEEEECTTCSCC-EECCCCSCCCEEEEE
T ss_pred ccccccccccccce----eeeeeccccCCCccceeeeee-eeeeeec--CCCEEEEEeCCCCeE-EEEccCCCCCeEEEE
Confidence 88899999866432 2222 1334456789999988 5777654 578888887654432 22221 24578899
Q ss_pred EcCCccceeeeccCCccCCCCeEEEee
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
++++|..+++-.. ++.|+.++
T Consensus 231 ~d~~g~l~vad~~------~~rI~~i~ 251 (260)
T d1rwia_ 231 VDSDRTVYVADRG------NDRVVKLT 251 (260)
T ss_dssp ECTTCCEEEEEGG------GTEEEEEC
T ss_pred EeCCCCEEEEECC------CCEEEEEe
Confidence 9998876665432 56666554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.22 E-value=6.2e-09 Score=87.04 Aligned_cols=244 Identities=9% Similarity=-0.011 Sum_probs=143.8
Q ss_pred ecccCCCcc-EEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCCEE--EEEe-cCCcEEEEecCCc-cee
Q 040533 49 NMMDWGRNN-ILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAKTL--AVGY-MASKLQLWDAETS-KLI 122 (364)
Q Consensus 49 ~~~~~~~~~-~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l--~~~~-~dg~i~iw~~~~~-~~~ 122 (364)
.-+++++++ .+.++..+.+..|.+... ........ ........++++++++.+ +++. ..+.|..+.+... ...
T Consensus 43 s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~ 121 (365)
T d1jofa_ 43 SWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH-PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp SEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE-ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred CEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee-cCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcc
Confidence 347777754 555556677777776532 22222221 223456788899999844 3332 2355655543211 110
Q ss_pred ------------e---e-eecCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcceee--e--eecccCcEEEEEE
Q 040533 123 ------------R---N-LEGHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNNVTS--R--INAHTAEVCGLKW 181 (364)
Q Consensus 123 ------------~---~-~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~--~--~~~~~~~v~~~~~ 181 (364)
. . -......+.++.|+| +++++++++. ...|.+|+......... . ..........++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f 200 (365)
T d1jofa_ 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM 200 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred eeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEE
Confidence 0 0 011233478999999 8988777764 34788887654432221 1 1123456889999
Q ss_pred cCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEec-----------------ccccceeEEEEccCCCcEEEeecCC---
Q 040533 182 SNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFR-----------------DHRAAVKALAWCPYQFNVLASGGGT--- 240 (364)
Q Consensus 182 ~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~g~--- 240 (364)
+|+++++++.. .+++|.+|++...... .+.... ........+.++|+|++++++..+.
T Consensus 201 ~pdg~~~yv~~e~~~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~ 279 (365)
T d1jofa_ 201 HPTGNYLYALMEAGNRICEYVIDPATHM-PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE 279 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred CCCCceEEEeccCCCEEEEEEecCCCce-EEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCc
Confidence 99999886655 5789999998654321 111110 1122345789999998888875311
Q ss_pred CCCeEEEEECCCCeEEEE---E----ecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 241 QDGCIKIWNVQKGTCIHS---V----DTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~---~----~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
..+.|..|++.....+.. + ........++++| +|++|+++. ..++.|.+|++...
T Consensus 280 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~-----~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-----DQEGWLEIYRWKDE 342 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-----SSSCEEEEEEEETT
T ss_pred cceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEe-----CCCCeEEEEEEeCC
Confidence 223477787765322211 1 1234567899998 789888774 34899999987543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.7e-08 Score=87.12 Aligned_cols=297 Identities=10% Similarity=0.042 Sum_probs=165.9
Q ss_pred eecccCCCcc-EEEEEe----------CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 48 SNMMDWGRNN-ILAIAL----------GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~----------~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
.....+||++ .+.... .+.+.++|+.++...++.........+....|||||+.||... ++.|.+.+.
T Consensus 63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~ 141 (465)
T d1xfda1 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAH 141 (465)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESS
T ss_pred cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEec
Confidence 4455678864 333332 3689999999998766654444455677789999999999885 778999998
Q ss_pred CCcceeeeeec-CCCc-----------------EEEEEeecCCCCEEEEeeCC-C-------------------------
Q 040533 117 ETSKLIRNLEG-HDKR-----------------VATASWNHWNGHILTSGSQD-K------------------------- 152 (364)
Q Consensus 117 ~~~~~~~~~~~-~~~~-----------------v~~~~~~~~~~~~l~~~~~d-g------------------------- 152 (364)
.++...+.... .... -..+.||| +++.||....| .
T Consensus 142 ~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~ 220 (465)
T d1xfda1 142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (465)
T ss_dssp SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence 87765544332 1111 24677999 99988876422 2
Q ss_pred --------cEEEEEcccCcceeeee-----ecccCcEEEEEEcCCCCEEEEEeC-C---CeEEEEeCCCCCCCcceEEec
Q 040533 153 --------SIINHDVRVSNNVTSRI-----NAHTAEVCGLKWSNEGNLLASGGD-D---NLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 153 --------~i~~~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~-d---~~i~iwd~~~~~~~~~~~~~~ 215 (364)
.+.++|+..+....... ......+..+.|++++++++.... + ..+.++|..++... .+..-
T Consensus 221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~-~~~~e- 298 (465)
T d1xfda1 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKHED- 298 (465)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEEEE-
T ss_pred cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE-EEEEE-
Confidence 23445554332211111 112234678899999876655432 2 25778887765431 12111
Q ss_pred ccccce----eEEEEccCCCcEEEeecCCCC--CeEEEEECC------CCeEEEEEec-CCCeEEE-EEcCCccceeeec
Q 040533 216 DHRAAV----KALAWCPYQFNVLASGGGTQD--GCIKIWNVQ------KGTCIHSVDT-KAQICGL-EWNRHHKEILSGH 281 (364)
Q Consensus 216 ~~~~~v----~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~------~~~~~~~~~~-~~~v~~~-~~~~~~~~l~~~~ 281 (364)
.....| ....|+|+|..++....-..+ +.+...++. .++.+..+.. .-.|..+ .|+.+++.++...
T Consensus 299 ~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a 378 (465)
T d1xfda1 299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS 378 (465)
T ss_dssp ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEE
Confidence 122222 346789998765432100022 234433321 2222333322 2335554 6888877765322
Q ss_pred cCCccCCCCeEEEeeCCCCceeeec---cccccceeEEeecCCCCEEEEEeCC---CcEEEEEeeCCCCCccee
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGEL---QHQTSRILELSQSPDGLTVVSAAAD---ETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~ 349 (364)
. ........++-.++........+ ........++.|||++++++..... -.+.+++..+++.+..+.
T Consensus 379 ~-~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 379 T-EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp S-SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred e-CCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 1 00112334555555443332222 1233456789999999998754433 457788877776665554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.14 E-value=4.3e-08 Score=79.90 Aligned_cols=237 Identities=11% Similarity=0.146 Sum_probs=145.4
Q ss_pred ccCCCcc-EEEEEe--------CCeEEEEECCCCceeeeeeec--CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc
Q 040533 51 MDWGRNN-ILAIAL--------GLELYLWKQENGEVQKLLKVT--GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 51 ~~~~~~~-~~~~~~--------~~~i~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 119 (364)
.+|++++ ++.+.. ++.|..||..+++........ ........++|.++++.++++...+.|..++.+.+
T Consensus 23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~ 102 (314)
T d1pjxa_ 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGT 102 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSC
T ss_pred eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCc
Confidence 4566653 444332 467899998887654332211 11234678999999998888877777888887655
Q ss_pred ceeeeeecCC----CcEEEEEeecCCCCEEEEeeC---------------CCcEEEEEcccCcceeeeeecccCcEEEEE
Q 040533 120 KLIRNLEGHD----KRVATASWNHWNGHILTSGSQ---------------DKSIINHDVRVSNNVTSRINAHTAEVCGLK 180 (364)
Q Consensus 120 ~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~---------------dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 180 (364)
.......... ...+.+++.+ ++++.++-.. .|.|..++.. ...... ...-...+.++
T Consensus 103 ~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~~~-~~~~~~pNGi~ 178 (314)
T d1pjxa_ 103 FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQV-DTAFQFPNGIA 178 (314)
T ss_dssp EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEEE-EEEESSEEEEE
T ss_pred EEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec--CceeEe-eCCcceeeeeE
Confidence 3322111111 1356789998 8888776432 2334444432 222222 22334457899
Q ss_pred EcCCCC-----EEEEEeCCCeEEEEeCCCCCCCcc---eEEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 181 WSNEGN-----LLASGGDDNLVHVWDHSKMSSSKC---LHRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 181 ~~~~~~-----~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
|+|++. ++++-+..+.|..||+........ ...+.. .......+++..+|+ ++++.. ..+.|.+||.+
T Consensus 179 ~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~--~~g~I~~~dp~ 255 (314)
T d1pjxa_ 179 VRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIEVFGPD 255 (314)
T ss_dssp EEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEEEECTT
T ss_pred ECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEc--CCCEEEEEeCC
Confidence 998764 444556778899988754321111 111111 122356799999995 555443 47899999998
Q ss_pred CCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 252 KGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 252 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.++....+..+ ...++++|.|+++.|+++. +.++.|..+++..
T Consensus 256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~-----~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE-----HENNAVWKFEWQR 299 (314)
T ss_dssp CBSCSEEEECSSSCEEEEEECTTSSEEEEEE-----TTTTEEEEEECSS
T ss_pred CCEEEEEEECCCCCEEEEEEeCCCCEEEEEE-----CCCCcEEEEECCC
Confidence 88777766654 5688999999997665543 3378888888754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.12 E-value=2.2e-07 Score=74.35 Aligned_cols=235 Identities=13% Similarity=0.224 Sum_probs=151.5
Q ss_pred ecccCCCcc-EEEEE-eCCeEEEEECCCCceeeeeeec----CCCCCceEEEEcCCCC-EEEEE-ecCCcEEEEecCCcc
Q 040533 49 NMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLLKVT----GEDDFPTSISWSQDAK-TLAVG-YMASKLQLWDAETSK 120 (364)
Q Consensus 49 ~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~-~l~~~-~~dg~i~iw~~~~~~ 120 (364)
..++.++++ ++.+. .++.|++||.+ ++....+... +.......+++.++.. .+++. +.++.|..++. .++
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~ 103 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ 103 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-ccc
Confidence 345555543 44332 45788899865 4433222111 1122345666665543 44433 34557777775 466
Q ss_pred eeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee--ecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 121 LIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 121 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
....+. ........+++.+ ++.++++....+.+.+++.. ++ .+..+ ..+......+++.++++.+++....+.|
T Consensus 104 ~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~-~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 104 FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred ceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cc-eeecccccccccccceeeeccceeEEeeeccccce
Confidence 555553 2345677889988 88888887777888888864 22 23332 3355678889999999888888888999
Q ss_pred EEEeCCCCCCCcceEEec--ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcC
Q 040533 198 HVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNR 272 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~ 272 (364)
++||... +.+..+. +.......|++++++. ++++-. ..++.|.+|+ .+|+.+..+... .....+++.|
T Consensus 181 ~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~-~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 181 KVFNYEG----QYLRQIGGEGITNYPIGVGINSNGE-ILIADN-HNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp EEEETTC----CEEEEESCTTTSCSEEEEEECTTCC-EEEEEC-SSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEET
T ss_pred eeeecCC----ceeeeecccccccCCcccccccCCe-EEEEEC-CCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeC
Confidence 9999543 3344442 2344578899999995 665532 1355799998 468877777543 3578999999
Q ss_pred CccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 273 HHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
+|.++++. . ++.|++|......+
T Consensus 254 dG~l~V~~-~------n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 254 DGSVVLAS-K------DYRLYIYRYVQLAP 276 (279)
T ss_dssp TTEEEEEE-T------TTEEEEEECSCCCC
T ss_pred CCcEEEEe-C------CCeEEEEEeeeecC
Confidence 99866543 2 88999999876543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.10 E-value=1.9e-07 Score=76.30 Aligned_cols=223 Identities=8% Similarity=0.020 Sum_probs=140.3
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC----CCeEEEEeCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD----DNLVHVWDHSK 204 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~ 204 (364)
...+..++|.+ +++++++-..++.|..|+...+.. .............++++++|+++++... .+.+...+...
T Consensus 39 ~~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~-~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 39 GLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEI-KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp CCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred CcCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeE-EEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence 34457899998 888888877889999998876543 3334445567889999999987776543 23455555433
Q ss_pred CCCCcceEEec--ccccceeEEEEccCCCcEEEeecCC----CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcccee
Q 040533 205 MSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGT----QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 205 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~----~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 278 (364)
... ..... ........+++.++|. ++++.... ..+.+..++...+........-...+.++|+|+++.|+
T Consensus 117 ~~~---~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 117 DNL---QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp CSC---EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred cee---eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEE
Confidence 221 11111 1123467899999995 55543200 12346666654443333333334568899999998776
Q ss_pred eeccCCccCCCCeEEEeeCCCC-ceeeec-------cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHM-TKWGEL-------QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV- 349 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~-~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~- 349 (364)
.+.. ..+.|+.|++... ...... .......-.+++.++|++.++....+.|.+|+. .++.+..+.
T Consensus 193 vad~-----~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~ 266 (319)
T d2dg1a1 193 VTET-----TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 266 (319)
T ss_dssp EEEG-----GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred Eecc-----cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence 6542 2788999987642 221111 111123567999999998888888999999995 566655543
Q ss_pred -----ccCCceeeeeeccC
Q 040533 350 -----SHLDGLLSLKVSPI 363 (364)
Q Consensus 350 -----~~~~~v~~~~~sp~ 363 (364)
++...+++++|.|.
T Consensus 267 P~~~~~~~~~~~~~~~~~~ 285 (319)
T d2dg1a1 267 PGRDEGHMLRSTHPQFIPG 285 (319)
T ss_dssp TTGGGTCSCBCCEEEECTT
T ss_pred CCcCCCcCceeeeEEEeCC
Confidence 23345778888764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.96 E-value=3.4e-07 Score=73.02 Aligned_cols=232 Identities=9% Similarity=0.014 Sum_probs=129.1
Q ss_pred EEcCC--CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC-CC-----cEEEEEcccCcce
Q 040533 94 SWSQD--AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ-DK-----SIINHDVRVSNNV 165 (364)
Q Consensus 94 ~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg-----~i~~~d~~~~~~~ 165 (364)
..||| |+.+|..+ +|.|.+.|+.+++. +.+..+.+.+...+||| +++.|+.... ++ .|.+++...+..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~- 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEI- 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEE-
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCce-
Confidence 46788 99988774 67899999988775 45666778889999999 8988875532 22 366667665542
Q ss_pred eeeeec-------ccCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 166 TSRINA-------HTAEVCGLKWSNEGNLLASGGDD------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 166 ~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
..+.. .........|+|+|+.|+..... ..+...+.... . .... +...... .+.+++..
T Consensus 81 -~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--~~~~~~~-~~~~~~~~ 152 (281)
T d1k32a2 81 -KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI---N-FVPL--NLGPATH-ILFADGRR 152 (281)
T ss_dssp -EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT---E-EEEC--CSCSCSE-EEEETTEE
T ss_pred -EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc---e-eEEe--cCCccce-eeecCCCe
Confidence 22211 12344678899999988875432 22334443221 1 1111 1222222 33344434
Q ss_pred EEEeecCCC---------CCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee
Q 040533 233 VLASGGGTQ---------DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303 (364)
Q Consensus 233 ~~~~~~g~~---------d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~ 303 (364)
.+....... ............................++++........ .....|+++|+.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~d~~g~~~~ 227 (281)
T d1k32a2 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDI-----DGFGQIYSTDLDGKDLR 227 (281)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECT-----TSSCEEEEEETTSCSCE
T ss_pred EEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceeccc-----ccccceEEEeCCCCceE
Confidence 444332000 0112222222333333333444455556666543333211 22567888898776544
Q ss_pred eeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 304 GELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 304 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
......... ...|+|||+.|+.. .++.|+++|+.+++..
T Consensus 228 ~lt~~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 228 KHTSFTDYY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKIE 266 (281)
T ss_dssp ECCCCCSSC--EEEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred EeecCCCcc--cccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence 322222222 34689999988764 4688999998877653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.94 E-value=4.1e-06 Score=67.25 Aligned_cols=220 Identities=8% Similarity=0.017 Sum_probs=144.0
Q ss_pred eEEEEcCCCCEE-EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee-
Q 040533 91 TSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR- 168 (364)
Q Consensus 91 ~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~- 168 (364)
.+..|.+....| .+--..+.|.-||.++++.. .+. ....+.++++.+ ++.++++ +.+ .+.++|..+++.....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 356788755444 44446788999999887643 333 456788999988 7776665 444 5888998877632111
Q ss_pred eec--ccCcEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 169 INA--HTAEVCGLKWSNEGNLLASGGD----DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 169 ~~~--~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
... ....++.+.+.|+|++.++... .+.-.+|.+..+. +..+...-.....++|+++++.++++.+ ..
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~----~~~~~~~~~~~Ng~~~s~d~~~l~~~dt--~~ 169 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK----VTKLFADISIPNSICFSPDGTTGYFVDT--KV 169 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE----EEEEEEEESSEEEEEECTTSCEEEEEET--TT
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc----EEEEeeccCCcceeeecCCCceEEEeec--cc
Confidence 111 1235788999999987665432 2233455543332 2222223344578999999988888765 78
Q ss_pred CeEEEEECCC------CeEEEEEe---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce
Q 040533 243 GCIKIWNVQK------GTCIHSVD---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI 313 (364)
Q Consensus 243 ~~i~i~d~~~------~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 313 (364)
+.|..|++.. ++...... .......+++..+|.+.++... .+.|..|| .+++.+..+.-....+
T Consensus 170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~------~g~V~~~d-p~G~~~~~i~lP~~~~ 242 (295)
T d2ghsa1 170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG------EGAVDRYD-TDGNHIARYEVPGKQT 242 (295)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET------TTEEEEEC-TTCCEEEEEECSCSBE
T ss_pred ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC------CCceEEec-CCCcEeeEecCCCCce
Confidence 8899998742 11211222 2345788999999998877644 78899999 5788888887766779
Q ss_pred eEEeec-CCCCEEEEE
Q 040533 314 LELSQS-PDGLTVVSA 328 (364)
Q Consensus 314 ~~i~~~-~~~~~l~~~ 328 (364)
++++|- +|.+.|+..
T Consensus 243 T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 243 TCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEEEEESTTSCEEEEE
T ss_pred EEEEEeCCCCCEEEEE
Confidence 999995 576666543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.93 E-value=1.7e-07 Score=74.85 Aligned_cols=225 Identities=10% Similarity=0.074 Sum_probs=123.8
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-CC-----cEEEEecCCcceeeeeec----
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-AS-----KLQLWDAETSKLIRNLEG---- 127 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~---- 127 (364)
.++...++.|++.|+.+++..++. .+...+...+|||||+.||.... ++ .|.+++..+++..+....
T Consensus 14 ~v~f~~~~dl~~~d~~~g~~~~Lt---~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~ 90 (281)
T d1k32a2 14 RIIFVCCDDLWEHDLKSGSTRKIV---SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS 90 (281)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEE---CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE
T ss_pred EEEEEeCCcEEEEECCCCCEEEEe---cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCc
Confidence 566667889999999999875543 55677889999999999987642 22 477888877765443211
Q ss_pred --CCCcEEEEEeecCCCCEEEEeeCC------CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCe---
Q 040533 128 --HDKRVATASWNHWNGHILTSGSQD------KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL--- 196 (364)
Q Consensus 128 --~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--- 196 (364)
.........|+| +++.|+..... ..+...+..... ... .+........+.+.+..++....+..
T Consensus 91 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (281)
T d1k32a2 91 TGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGIN--FVP--LNLGPATHILFADGRRVIGRNTFELPHWK 165 (281)
T ss_dssp ETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTE--EEE--CCSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred cCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCce--eEE--ecCCccceeeecCCCeEEEeeccccceee
Confidence 122456788999 88888765332 123444444332 111 12222223333333333333222110
Q ss_pred --------EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEE
Q 040533 197 --------VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL 268 (364)
Q Consensus 197 --------i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~ 268 (364)
........ .................+.++ .++..........|.++|+.+++..+ +.........
T Consensus 166 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~~ 238 (281)
T d1k32a2 166 GYRGGTRGKIWIEVNS----GAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYPR 238 (281)
T ss_dssp TCCSTTCCEEEEEEET----TEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSCEE
T ss_pred eeccCCcceeeeeccc----cceeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEE-eecCCCcccc
Confidence 01111000 001111122233344455554 33333322234568888987765443 3333333445
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCceee
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~ 304 (364)
.|+|+|+.|+... ++.|+++|+.+++...
T Consensus 239 ~~SpDG~~I~f~~-------~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 239 HLNTDGRRILFSK-------GGSIYIFNPDTEKIEK 267 (281)
T ss_dssp EEEESSSCEEEEE-------TTEEEEECTTTCCEEE
T ss_pred cCcCCCCEEEEEe-------CCEEEEEECCCCCEEE
Confidence 7899999988653 7889999998876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.88 E-value=1e-06 Score=70.92 Aligned_cols=217 Identities=8% Similarity=-0.014 Sum_probs=141.3
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
....|++.++.++.+=-..+.|..||..++.. ..+ .....+.++++.+++.++++ +.+ .+..+|..+.+. ..+.
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~--~~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~-~~l~ 94 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRK--TVH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVL-TLHA 94 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCE-EEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeE--EEE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeeccccee-eEEe
Confidence 34568874555555555678899999887653 222 23456889999988876664 444 588999776532 1111
Q ss_pred Eecc--cccceeEEEEccCCCcEEEeec-CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 213 RFRD--HRAAVKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 213 ~~~~--~~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
.... ....++.+.+.|+|...+.+.. ....+.-.+|.+..++.......-.....++|+++++.++... +..
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~d-----t~~ 169 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVD-----TKV 169 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEE-----TTT
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEee-----ccc
Confidence 1111 1235788999999965554432 0012345667777777665555555678999999999776654 337
Q ss_pred CeEEEeeCCCCc------e--eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 290 QKLCLWKYPHMT------K--WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 290 ~~i~i~d~~~~~------~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
+.|+.|++.... . .....+..+....+++..+|++.++.-..+.|..||. .++.+..+......+++++|-
T Consensus 170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence 889888874311 1 1122233456788999999998887777888999994 567777776655678888884
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.58 E-value=7e-05 Score=58.60 Aligned_cols=250 Identities=9% Similarity=0.018 Sum_probs=149.9
Q ss_pred CEEEEEecCCcEEEEecCCccee-----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC
Q 040533 100 KTLAVGYMASKLQLWDAETSKLI-----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA 174 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 174 (364)
.+|+.+. .+.|+-.+++..... ..+..+...+..++|.+.++.++.+-..++.|...++..... .........
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEeccc
Confidence 4555554 356777777543221 223334456788999983444444445667888888875543 333333335
Q ss_pred cEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 175 EVCGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
.+.++++..-+..|+.+ ...+.|.+.++..... .............++++|....++.+..+.....|.--++...
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~---~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~ 156 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceE---EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC
Confidence 68899998755555544 4567999999765322 1222223356789999998878887754323445665666544
Q ss_pred eEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE-eCC
Q 040533 254 TCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA-AAD 331 (364)
Q Consensus 254 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d 331 (364)
........ -....++++++.++.|+... ...+.|...++........+.+.. ...+|++. +..|+.. ...
T Consensus 157 ~~~~i~~~~~~~P~glaiD~~~~~lYw~d-----~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~ 228 (263)
T d1npea_ 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVD-----AGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKT 228 (263)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTT
T ss_pred CceeeeeecccccceEEEeecCcEEEEEe-----CCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCC
Confidence 33333322 25578999998888776653 226789888887655443343332 24578775 4455554 456
Q ss_pred CcEEEEEeeCCCCCccee-ccCCceeeeeecc
Q 040533 332 ETLRFWEAFGPSGSGDFV-SHLDGLLSLKVSP 362 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~-~~~~~v~~~~~sp 362 (364)
+.|...|..+++....+. .......+++.-+
T Consensus 229 ~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 788888887776655443 2334455665544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=7.3e-05 Score=58.48 Aligned_cols=250 Identities=7% Similarity=-0.044 Sum_probs=151.4
Q ss_pred EEEEEeCCeEEEEECCCCceee---eeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecCCCcEE
Q 040533 58 ILAIALGLELYLWKQENGEVQK---LLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGHDKRVA 133 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~ 133 (364)
+|..+..+.|+-.+++...... ...+..+...+..++|.+..+.|.-.. .++.|+..++........+......+.
T Consensus 3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~ 82 (263)
T d1npea_ 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE 82 (263)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE
T ss_pred EEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc
Confidence 4555666788777776543221 111223344577899998777776654 567788888876655544444445688
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCCCcc
Q 040533 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-N--LVHVWDHSKMSSSKC 210 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~ 210 (364)
.+++....+++..+-...+.|.+.++..... ..........+..+++.|...+++..... + .|.--++.... .
T Consensus 83 ~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~--~- 158 (263)
T d1npea_ 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--R- 158 (263)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--C-
T ss_pred EEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC--c-
Confidence 8999873555555666678999999875543 22233334668899999977766655432 2 34444544221 1
Q ss_pred eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC
Q 040533 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290 (364)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (364)
.......-.....+++++.+..++.+-. ..+.|...|+........+.......++++. +..++... ...+
T Consensus 159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd-----~~~~ 229 (263)
T d1npea_ 159 RILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTD-----WKTN 229 (263)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEE-----TTTT
T ss_pred eeeeeecccccceEEEeecCcEEEEEeC--CCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEE-----CCCC
Confidence 2222223345678999988877877754 5789999999765544444443445677775 33444432 2267
Q ss_pred eEEEeeCCCCceeeeccc-cccceeEEeecC
Q 040533 291 KLCLWKYPHMTKWGELQH-QTSRILELSQSP 320 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~ 320 (364)
.|...|..+++.+..+.. .......|++.+
T Consensus 230 ~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 888888888877665532 223344554433
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.51 E-value=0.00011 Score=57.06 Aligned_cols=265 Identities=9% Similarity=0.102 Sum_probs=170.1
Q ss_pred ccCCCccEEEEEe----CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 51 MDWGRNNILAIAL----GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 51 ~~~~~~~~~~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+....+..+++-. ...|.|.|+..+........ .--+.-.+|..+.||.-+ ..+++|||+++.+.++.+.
T Consensus 27 ~T~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi-----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~ 100 (327)
T d1utca2 27 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT 100 (327)
T ss_dssp EECSSSSEEEEEEEETTEEEEEEEETTSTTSCEEEEC-----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCEEEEEeccCCCceEEEEECCCCCcceeccc-----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE
Confidence 3334466777543 24888999876653222222 123456789998888765 5689999999999998887
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc----CcEEEEEEcCCCCEEEEEe---C----CC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT----AEVCGLKWSNEGNLLASGG---D----DN 195 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~---~----d~ 195 (364)
..++|.-=.|- +.+.|+..+. ..|+-|+++....+.+.+..|. ..|.....+++.++++..+ . .|
T Consensus 101 -~~e~VvfWkWi--s~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G 176 (327)
T d1utca2 101 -MTDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 176 (327)
T ss_dssp -CSSCCCEEEES--SSSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred -cCCCcEEEEec--CCCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeE
Confidence 44567666675 5666666654 4799999976555666666554 4677788889999877654 2 36
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEccC--CCcEEEeec-CCCCCeEEEEECCCCe---E---EEEEe----c-
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY--QFNVLASGG-GTQDGCIKIWNVQKGT---C---IHSVD----T- 261 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~-g~~d~~i~i~d~~~~~---~---~~~~~----~- 261 (364)
.+.+|..+.. .-+.+.+|.+....+.+..+ ...+++.+. +...+++++.++.... . .+..+ .
T Consensus 177 ~mQLYS~er~----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe 252 (327)
T d1utca2 177 AMQLYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 252 (327)
T ss_dssp EEEEEETTTT----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred EEEEEEeccC----cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc
Confidence 7889987653 35667777665555444321 123444332 1244789999886521 1 11111 1
Q ss_pred --CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEE
Q 040533 262 --KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLR 335 (364)
Q Consensus 262 --~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 335 (364)
..-..++..++....++.-+. -|.+++||+.++.++..-+-....|...+-+.+..=+++...+|.|.
T Consensus 253 a~~DFPvamqvs~kygiiyviTK------~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 253 AQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp CTTCCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred ccCCcEEEEEeeccCCEEEEEec------CcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 122567777777766666543 89999999999999987776666766555555544455556677654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.35 E-value=3.5e-05 Score=63.14 Aligned_cols=221 Identities=12% Similarity=0.084 Sum_probs=131.4
Q ss_pred CCCEEEEEe-cCCcEEEEecCCcceeeeeec-CCCcEEEEEeecC-CCCEEEEeeCCC------------------cEEE
Q 040533 98 DAKTLAVGY-MASKLQLWDAETSKLIRNLEG-HDKRVATASWNHW-NGHILTSGSQDK------------------SIIN 156 (364)
Q Consensus 98 ~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~l~~~~~dg------------------~i~~ 156 (364)
||++|++.. .+++|.+-|+++.+..+.+.. ....+..++..+. +..+++.++.+. .+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 788888776 678899999999987664432 3445666665431 556777766532 2556
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC--------------------------------------CeEE
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD--------------------------------------NLVH 198 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------------------------------~~i~ 198 (364)
.|..+.+...+... ......++++++|+++++.+.+ +.+.
T Consensus 178 ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 178 VDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 77765553222221 2345678999999998887643 1133
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC------------eEEEEEecCCCeE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG------------TCIHSVDTKAQIC 266 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------------~~~~~~~~~~~v~ 266 (364)
+-|.+.......+..+. -......+.++|||+++++++. .+.++.++|+++- ......+..-...
T Consensus 256 VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGK--Ls~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL 332 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 332 (459)
T ss_dssp EEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred eecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCC--cCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence 44433221112222222 2334567899999999999876 8999999999641 1122222333345
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCC----------ceeeecccccc-----ceeEEeecCCCCEEEEEe
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM----------TKWGELQHQTS-----RILELSQSPDGLTVVSAA 329 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~-----~i~~i~~~~~~~~l~~~~ 329 (364)
.-+|+..|....+- |. |..|.-|++... ..+..+.-|-+ ....-...|+|++|++..
T Consensus 333 ht~fd~~g~aytsl--fi----ds~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 333 HTAFDGRGNAYTSL--FL----DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEEECTTSEEEEEE--TT----TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred ccccCCCceEEEEe--ec----cceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence 56788777432222 33 999999998432 33334433322 111224578999999875
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=0.00042 Score=54.12 Aligned_cols=233 Identities=6% Similarity=-0.063 Sum_probs=141.6
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcc----eeeeeecCCCcE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSK----LIRNLEGHDKRV 132 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~----~~~~~~~~~~~v 132 (364)
+|..+....|+-.++.+.+...+. .....+..++|.+..+.|.-.. ..+.|.-.++.... ....+......+
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~---~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECCCeEEEEECCCCcceeee---CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 455666677888999887654443 3455678999998887776654 45567666664321 112223233456
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~ 210 (364)
..+++.+..+++..+-...+.|.+.++..... .............++++|...+|.... ..+.|.-.++....
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~---- 154 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---- 154 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc----
Confidence 67888774566666666777899999875543 333444456688999999665666544 33456666654321
Q ss_pred eEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCcc
Q 040533 211 LHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 211 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
...+ ...-.....+++++.+..++.+-. ..+.|...++............ ....++++.. ..++.+.
T Consensus 155 ~~~l~~~~~~~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td----- 225 (266)
T d1ijqa1 155 IYSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTD----- 225 (266)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEE-----
T ss_pred eecccccccceeeEEEeeccccEEEEecC--CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEEE-----
Confidence 2222 223345688999998878888765 6789999998655433333322 2355666663 3344332
Q ss_pred CCCCeEEEeeCCCCceeeecc
Q 040533 287 GDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~ 307 (364)
..++.|...+..+++....+.
T Consensus 226 ~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 226 IINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp TTTTEEEEEETTTCCCCEEEE
T ss_pred CCCCeEEEEECCCCcceEEEE
Confidence 126777777776666554444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=0.00055 Score=53.46 Aligned_cols=249 Identities=10% Similarity=-0.018 Sum_probs=150.1
Q ss_pred EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEe-eCCCcEEEEEcccCc---ceeeeeecccCcE
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSG-SQDKSIINHDVRVSN---NVTSRINAHTAEV 176 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~---~~~~~~~~~~~~v 176 (364)
+|+.+. ...|+-.++++......+. ....+..++|++ ..+.|.-. ...+.|...++.... ............+
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 455554 3468888988765444444 556678999998 55555444 456667766664322 1112222233456
Q ss_pred EEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 177 CGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
..+++.+.+..|+.+ ...+.|.+.++.... ..............++++|....++.+..+ ..+.|.-.++.....
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dGs~~ 155 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI 155 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCE
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCce---EEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCCCce
Confidence 678888755555554 456789999976432 122233344567899999977678777532 456788888865444
Q ss_pred EEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCCCEEEEE-eCC
Q 040533 256 IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDGLTVVSA-AAD 331 (364)
Q Consensus 256 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~-~~d 331 (364)
...... -....++++++.+..|+... ...+.|...++.......... .......++++. +..|+.+ ..+
T Consensus 156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d-----~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~ 228 (266)
T d1ijqa1 156 YSLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 228 (266)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ecccccccceeeEEEeeccccEEEEec-----CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCC
Confidence 433333 25578999999888777664 236789988986544332222 222345677776 3345444 467
Q ss_pred CcEEEEEeeCCCCCcceeccCCceeeee-eccC
Q 040533 332 ETLRFWEAFGPSGSGDFVSHLDGLLSLK-VSPI 363 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~~~~~v~~~~-~sp~ 363 (364)
+.|...+..+++....+......+.++. ++|.
T Consensus 229 ~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~ 261 (266)
T d1ijqa1 229 EAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL 261 (266)
T ss_dssp TEEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred CeEEEEECCCCcceEEEEcCCCCceEEEEECCc
Confidence 8888888788777766665544444443 4553
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.04 E-value=0.0021 Score=52.53 Aligned_cols=213 Identities=12% Similarity=0.067 Sum_probs=133.4
Q ss_pred eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEecC------------------CcEEEEecCCccee
Q 040533 63 LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMA------------------SKLQLWDAETSKLI 122 (364)
Q Consensus 63 ~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d------------------g~i~iw~~~~~~~~ 122 (364)
.++.|.+.|+.+.++.++.+++ ....+..+...+ +..|++.++.. +.+.+.|.++++..
T Consensus 108 an~RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~ 186 (459)
T d1fwxa2 108 ANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA 186 (459)
T ss_dssp TTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEE
T ss_pred CCceEEEEECcceeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEE
Confidence 4579999999999988887764 345567777655 45678776653 23678899988887
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCC---------------cEEEEEc-----------------------ccC--
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDK---------------SIINHDV-----------------------RVS-- 162 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~~~d~-----------------------~~~-- 162 (364)
..+.- ......+.++| +++++++.+.+. .+.++++ +..
T Consensus 187 ~QV~V-~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~ 264 (459)
T d1fwxa2 187 WQVLV-SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS 264 (459)
T ss_dssp EEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--
T ss_pred EEeee-CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCC
Confidence 77663 34566789999 888888776431 1333433 211
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCC--------CcceEEecccccceeEEEEccCCCcE
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSS--------SKCLHRFRDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~ 233 (364)
......+. -......+.++|||+++++++ -+.++.++|+++... ...+..-....-.-..-+|+..| +.
T Consensus 265 ~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~a 342 (459)
T d1fwxa2 265 SLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NA 342 (459)
T ss_dssp CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EE
T ss_pred cceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eE
Confidence 11111111 122345789999999888776 578999999864211 11111111112233456788877 56
Q ss_pred EEeecCCCCCeEEEEECCC----------CeEEEEEecCCCeEEEE------EcCCccceeeecc
Q 040533 234 LASGGGTQDGCIKIWNVQK----------GTCIHSVDTKAQICGLE------WNRHHKEILSGHG 282 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~----------~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~ 282 (364)
..+-. -|..|.-|++.. ...+..+..+-++-.+. ..|+|++|++...
T Consensus 343 ytslf--ids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 343 YTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp EEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEEee--ccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecc
Confidence 66655 799999999843 24556666655544443 3578888887653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.96 E-value=0.002 Score=53.12 Aligned_cols=263 Identities=12% Similarity=0.047 Sum_probs=132.5
Q ss_pred eEEEEECCCCceeeeeeec-CCCCCceEEEEcCCCCEEEEEecC-CcEEEEecCCcceeeeeecC-CCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVT-GEDDFPTSISWSQDAKTLAVGYMA-SKLQLWDAETSKLIRNLEGH-DKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 142 (364)
.+.+||..++......... .+.......++.+++.+++.|+.+ ..+.+||..+......-... ...-...+..+ ++
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG 131 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DG 131 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TS
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CC
Confidence 4789999998765443322 344445567889999999988755 57999999876543321111 11123455566 88
Q ss_pred CEEEEeeCC------CcEEEEEcccCcceee--------eeeccc-----CcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 143 HILTSGSQD------KSIINHDVRVSNNVTS--------RINAHT-----AEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 143 ~~l~~~~~d------g~i~~~d~~~~~~~~~--------~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
++++.|+.+ ..+.+||..+..-... ....+. ..-..+...++++.+..+..++.+.++|..
T Consensus 132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 211 (387)
T d1k3ia3 132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 211 (387)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence 998888753 3588999876541100 000000 000112233567777777777777777765
Q ss_pred CCCCCcceEEecc----ccc--ceeEEEEccCCCcEEEeecCCC------CCeEEEEECCC---CeEEEEEe----cCCC
Q 040533 204 KMSSSKCLHRFRD----HRA--AVKALAWCPYQFNVLASGGGTQ------DGCIKIWNVQK---GTCIHSVD----TKAQ 264 (364)
Q Consensus 204 ~~~~~~~~~~~~~----~~~--~v~~~~~~~~~~~~~~~~~g~~------d~~i~i~d~~~---~~~~~~~~----~~~~ 264 (364)
.... ........ +.. .-.++.+......+++.++... .....+.++.. ........ ....
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ 290 (387)
T d1k3ia3 212 SGDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 290 (387)
T ss_dssp TCEE-EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred cCcE-eeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccc
Confidence 4321 11111100 000 1122333333335666664211 11233333322 11111111 1112
Q ss_pred eEEEEEcCCccceeeeccCCcc-----CCCCeEEEeeCCCCc--eeeeccccccceeEEeecCCCCEEEEEeC
Q 040533 265 ICGLEWNRHHKEILSGHGFSSS-----GDGQKLCLWKYPHMT--KWGELQHQTSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~-----~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 330 (364)
-.+....++++.++.|...... .....+.+||..+.+ .+..+......-....+.+||+.++.|+.
T Consensus 291 ~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 291 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 3355666888887776532111 112257889976543 22212111111112345789999999874
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.92 E-value=0.0036 Score=54.52 Aligned_cols=80 Identities=11% Similarity=-0.007 Sum_probs=51.4
Q ss_pred CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc-eeEEeecCC
Q 040533 243 GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR-ILELSQSPD 321 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~ 321 (364)
|.|.-+|+.+++.+-+.....+..+-..+..+..++++. .|+.++-+|.++++.+.+++-.... -.-+.|..|
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~------~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~d 517 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT------LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK 517 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEEC------CCCeEEEEECCCCcEEEEEECCCCceecceEEEEC
Confidence 578889999999887776554433222233444555553 4999999999999999887633211 112455557
Q ss_pred CC-EEEEE
Q 040533 322 GL-TVVSA 328 (364)
Q Consensus 322 ~~-~l~~~ 328 (364)
|+ |+++.
T Consensus 518 GkqYi~v~ 525 (571)
T d2ad6a1 518 GKQYIGSM 525 (571)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 75 55443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.86 E-value=0.0021 Score=56.03 Aligned_cols=276 Identities=11% Similarity=0.055 Sum_probs=147.4
Q ss_pred CCeEEEEEC-CCCceeeeeeecCCC---------CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC----
Q 040533 64 GLELYLWKQ-ENGEVQKLLKVTGED---------DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD---- 129 (364)
Q Consensus 64 ~~~i~iw~~-~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---- 129 (364)
++.|+-.|. ++|+..=.+...... ..-..+++. +..++.++.||.+.-.|.++|+.........
T Consensus 72 ~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~ 149 (571)
T d2ad6a1 72 PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG 149 (571)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT
T ss_pred CCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhccccccccccc
Confidence 577888886 457653222111000 000123443 3467788899999999999999876654211
Q ss_pred CcEEEEEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeecc-------------------------------
Q 040533 130 KRVATASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINAH------------------------------- 172 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~------------------------------- 172 (364)
..++.--.-. ++. ++.+. .+|.|.-+|+.+++.+.......
T Consensus 150 ~~~t~~p~v~-~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (571)
T d2ad6a1 150 STLTQAPFVA-KDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGD 227 (571)
T ss_dssp CBCCSCCEEE-TTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTT
T ss_pred cceeecCeEe-CCe-EEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCc
Confidence 1111111111 333 34443 36789999999887544321110
Q ss_pred -----cCcE-EEEEEcCCCCEEEEEeC----------------CCeEEEEeCCCCCCCcceEEecccccc----------
Q 040533 173 -----TAEV-CGLKWSNEGNLLASGGD----------------DNLVHVWDHSKMSSSKCLHRFRDHRAA---------- 220 (364)
Q Consensus 173 -----~~~v-~~~~~~~~~~~l~~~~~----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~---------- 220 (364)
...+ ...++.++..+++.+.. ...+.-.|.++++ .+-.++.....
T Consensus 228 ~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~---~~W~~q~~~~D~Wd~D~~~~~ 304 (571)
T d2ad6a1 228 AWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM---AKWGYQKTPHDEWDFAGVNQM 304 (571)
T ss_dssp GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC---EEEEEESSTTCSSCCCCCCCC
T ss_pred ccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchh---heecccccCcccccccccccc
Confidence 0111 12455565555555443 2346666766543 23333321111
Q ss_pred -eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC------------------------------------
Q 040533 221 -VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------------------------------------ 263 (364)
Q Consensus 221 -v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------------------------------ 263 (364)
...+........+++..+ .+|.+.++|..+|+.+...+...
T Consensus 305 ~l~~~~~~g~~~~~v~~~~--k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~ 382 (571)
T d2ad6a1 305 VLTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSA 382 (571)
T ss_dssp EEEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCT
T ss_pred ceeeeeccCccccceeecc--ccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEecc
Confidence 112222222122444544 79999999999999875432110
Q ss_pred ----CeEEEEEcCCccceeeeccC-------------------------------CccCCCCeEEEeeCCCCceeeeccc
Q 040533 264 ----QICGLEWNRHHKEILSGHGF-------------------------------SSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 264 ----~v~~~~~~~~~~~l~~~~~~-------------------------------~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
.-...+++|+...+++.... ......|.|.-+|+.+++.+-+...
T Consensus 383 ~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~ 462 (571)
T d2ad6a1 383 MGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE 462 (571)
T ss_dssp TCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE
T ss_pred ccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCC
Confidence 00124566665555432210 0111235788888888888766542
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.. +..+-.....+.++++|+.||.++-+|.++++.+-++.
T Consensus 463 ~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 463 KF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp SS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 21 11111122245688889999999999999999887665
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.74 E-value=0.0069 Score=52.57 Aligned_cols=285 Identities=12% Similarity=0.016 Sum_probs=154.5
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecCC--------CCCc-eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTGE--------DDFP-TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~--------~~~v-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
.++.++.++.|+-.|.++|+..=.+..... ...+ ..++. .+..++.+..++.|.-.|..+|+.+.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~ 145 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence 466677888999999999976432211100 0000 11111 245688888999999999999998877653
Q ss_pred CCCcE-EEEEeec-CCCCEEEEeeC------CCcEEEEEcccCcceeeeeecc---------------------------
Q 040533 128 HDKRV-ATASWNH-WNGHILTSGSQ------DKSIINHDVRVSNNVTSRINAH--------------------------- 172 (364)
Q Consensus 128 ~~~~v-~~~~~~~-~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~--------------------------- 172 (364)
..... ..+.-.| -.+..++.+.. .|.|.-+|.++++.+-+.....
T Consensus 146 ~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (560)
T d1kv9a2 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL 225 (560)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred cCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccc
Confidence 22110 0000000 01233444332 3678899998887544332110
Q ss_pred --cCcE-EEEEEcCCCCEEEEEeC-------------------CCeEEEEeCCCCCCCcceEEecccccc----------
Q 040533 173 --TAEV-CGLKWSNEGNLLASGGD-------------------DNLVHVWDHSKMSSSKCLHRFRDHRAA---------- 220 (364)
Q Consensus 173 --~~~v-~~~~~~~~~~~l~~~~~-------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~---------- 220 (364)
...+ ..+++.+...+++.+.. ...|.-.|+++++. .-.++.....
T Consensus 226 ~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~---~W~~Q~~~~D~wd~d~~~~~ 302 (560)
T d1kv9a2 226 GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL---AWHYQVTPGDSWDFTATQQI 302 (560)
T ss_dssp CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE---EEEEESSTTCCSCCCCCSCE
T ss_pred cCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccce---eEEEecccccccccccccee
Confidence 0111 12455565555554321 13455556555432 2222221111
Q ss_pred -eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC-----------------------------------
Q 040533 221 -VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ----------------------------------- 264 (364)
Q Consensus 221 -v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----------------------------------- 264 (364)
...+........+++.+. .+|.+.++|..+++++...+....
T Consensus 303 ~l~~~~~~g~~~~~v~~~~--k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg 380 (560)
T d1kv9a2 303 TLAELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (560)
T ss_dssp EEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred eeeeeecCCceeeeeeecC--ccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccc
Confidence 122222222223455544 899999999999998765432110
Q ss_pred --eEEEEEcCCccceeeeccC------------------------------CccCCCCeEEEeeCCCCceeeeccccccc
Q 040533 265 --ICGLEWNRHHKEILSGHGF------------------------------SSSGDGQKLCLWKYPHMTKWGELQHQTSR 312 (364)
Q Consensus 265 --v~~~~~~~~~~~l~~~~~~------------------------------~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 312 (364)
-...+++|+...++..... ......|.|.-+|+.+++.+-+..... +
T Consensus 381 ~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~ 459 (560)
T d1kv9a2 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-H 459 (560)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-S
T ss_pred cccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-C
Confidence 1134555655554432110 001123678889999998887765322 2
Q ss_pred eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 313 ILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 313 i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
..+-.+.-.+.++++|+.||.++-+|.++++.+-.+.
T Consensus 460 ~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~ 496 (560)
T d1kv9a2 460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (560)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence 2222233356688899999999999999999887665
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.73 E-value=0.009 Score=49.96 Aligned_cols=251 Identities=8% Similarity=0.048 Sum_probs=132.1
Q ss_pred CceEEEEcCCCCEEEEEe-cCC----cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC------------
Q 040533 89 FPTSISWSQDAKTLAVGY-MAS----KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD------------ 151 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~-~dg----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------ 151 (364)
.+..+++|||++++|.+- .+| .|+++|+.+++.+...-. ......++|.+ +++.|+-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcC-CCCEEEEEEeccccCcccccccc
Confidence 345678899999998654 233 699999999987643211 11224678999 77766543322
Q ss_pred ----CcEEEEEcccCcce-eeeeecc--cCcEEEEEEcCCCCEEEEEeC---CCe--EEEEeCCCCCCC-----cceEEe
Q 040533 152 ----KSIINHDVRVSNNV-TSRINAH--TAEVCGLKWSNEGNLLASGGD---DNL--VHVWDHSKMSSS-----KCLHRF 214 (364)
Q Consensus 152 ----g~i~~~d~~~~~~~-~~~~~~~--~~~v~~~~~~~~~~~l~~~~~---d~~--i~iwd~~~~~~~-----~~~~~~ 214 (364)
..|..+.+.+.... ...+... ...+..+..++++++++.... +.. +.+.|+...... ......
T Consensus 204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 283 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (430)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEee
Confidence 25777777655432 1222222 234667778899988764332 233 444454432111 011112
Q ss_pred cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEEecC-CCeEEEEEcCCccceeeeccCCccCCCC
Q 040533 215 RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQ 290 (364)
Q Consensus 215 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (364)
........-+. +..+..++.+.-+..++.|...++.+... ...+..+ ..+..-.+...+.+|+.... -....
T Consensus 284 ~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~---~~~~~ 359 (430)
T d1qfma1 284 DNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL---HDVKN 359 (430)
T ss_dssp CSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE---ETTEE
T ss_pred cccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEE---cCCEe
Confidence 22222222222 22332344443223457788777765432 2223322 33443344444444544321 01145
Q ss_pred eEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE-e---CCCcEEEEEeeCCCCC
Q 040533 291 KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA-A---ADETLRFWEAFGPSGS 345 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~---~dg~i~vw~~~~~~~~ 345 (364)
.|+++++.++..........+.+..+...++...+... + .=.++.-+|+.+++..
T Consensus 360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE 418 (430)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred EEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence 68999998877665544445566666655655543322 2 2267888888887654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.63 E-value=0.011 Score=51.72 Aligned_cols=241 Identities=10% Similarity=0.035 Sum_probs=135.0
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCC----cEEE-EEeecCCCCEEEEeeC------CCcEEEEEcccCcceeee
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDK----RVAT-ASWNHWNGHILTSGSQ------DKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~ 168 (364)
.+++.++.|+.|.-.|.++|+.+..+..... .++. -.+ -++.++.+.. .|.|+-+|+++++.+-+.
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~ 198 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE---ECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence 4788899999999999999999887653211 1111 111 2344555543 488999999988864432
Q ss_pred eecc------------------------------------cCc-EEEEEEcCCCCEEEEEeCC----------------C
Q 040533 169 INAH------------------------------------TAE-VCGLKWSNEGNLLASGGDD----------------N 195 (364)
Q Consensus 169 ~~~~------------------------------------~~~-v~~~~~~~~~~~l~~~~~d----------------~ 195 (364)
.... ... -..+++.+...+++.+..+ .
T Consensus 199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~ 278 (596)
T d1w6sa_ 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (596)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccc
Confidence 2110 000 1234455655555554322 3
Q ss_pred eEEEEeCCCCCCCcceEEecc--ccc-------ceeEEEE-ccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 196 LVHVWDHSKMSSSKCLHRFRD--HRA-------AVKALAW-CPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~--~~~-------~v~~~~~-~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
.+.-.|+++++. +-.++. |.. ...-+.. ..+++ .+++... .+|.+.++|..+|+.+...+...
T Consensus 279 sivAlD~~TG~~---~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~--k~G~~~vlDr~tG~~i~~~~~~~ 353 (596)
T d1w6sa_ 279 TIFGRDADTGEA---KFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDD 353 (596)
T ss_dssp EEEEEETTTCCE---EEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccc---cccccceeccccCCccccceeeeeccccccccccceeccc--cccceeeecCCCCceeeeccccc
Confidence 466667666432 333322 211 1111111 12232 3455544 88999999999999876543210
Q ss_pred --------------C--------------------------eEEEEEcCCccceeeeccC------------------C-
Q 040533 264 --------------Q--------------------------ICGLEWNRHHKEILSGHGF------------------S- 284 (364)
Q Consensus 264 --------------~--------------------------v~~~~~~~~~~~l~~~~~~------------------~- 284 (364)
+ -...+++|+..+++..... .
T Consensus 354 ~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g 433 (596)
T d1w6sa_ 354 TVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVG 433 (596)
T ss_dssp TCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred cccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccc
Confidence 0 0123455555444432110 0
Q ss_pred --------------ccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 285 --------------SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 285 --------------~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
....-|.|.-||+.+++.+-+.... .+..+-.++..|.+++.|+.||.++.+|.++++.+-++.
T Consensus 434 ~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 434 ATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (596)
T ss_dssp EEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccccccCcccCcccCCCcceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence 0011267888888888877654322 222222333456788889999999999999999987665
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.52 E-value=0.023 Score=49.17 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=55.2
Q ss_pred CCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce-eEEeecC
Q 040533 242 DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI-LELSQSP 320 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~i~~~~ 320 (364)
.|.+.-+|+.+++.+-......+..+-.+.-.+.++++|.. |+.++-+|..+++.+.+++...... .-+.+..
T Consensus 437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~------dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~ 510 (560)
T d1kv9a2 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA------AGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL 510 (560)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred ccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECC------CCcEEEEECCCCcEeEEEECCCCccccCEEEEE
Confidence 36789999999999988876655444334445556666643 9999999999999998876432111 1144455
Q ss_pred CCC-EEEEEe
Q 040533 321 DGL-TVVSAA 329 (364)
Q Consensus 321 ~~~-~l~~~~ 329 (364)
+|+ ||++.+
T Consensus 511 dGkqyv~v~a 520 (560)
T d1kv9a2 511 AGRQYVAIMA 520 (560)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 775 555443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.51 E-value=0.012 Score=51.22 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=42.9
Q ss_pred CeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 290 QKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
|.+.-||+.+++.+-+.+... +...=..+-.|.++++|+.||.++.+|.++++.+.++.
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 468888888888887765332 11111223367788899999999999999999987665
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.48 E-value=0.026 Score=48.97 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=53.1
Q ss_pred CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce-eEEeecCC
Q 040533 243 GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI-LELSQSPD 321 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~i~~~~~ 321 (364)
|.+.-||+.+++.+-......+...-..+-.+.++++|.. |+.++.+|..+++.+.+++...... .=+.|..+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~------dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~ 530 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA------DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVD 530 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECC------CCeEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence 5688899999999988876655433334445666666643 9999999999999998876432211 11344457
Q ss_pred CC-EEEE
Q 040533 322 GL-TVVS 327 (364)
Q Consensus 322 ~~-~l~~ 327 (364)
|+ |++.
T Consensus 531 GkQYv~v 537 (573)
T d1kb0a2 531 GRQYVSV 537 (573)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 76 4444
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.40 E-value=0.035 Score=48.38 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=51.5
Q ss_pred CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc-eeEEeecCC
Q 040533 243 GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR-ILELSQSPD 321 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~ 321 (364)
|.|.-||+.+++.+-......+..+-.++..+.+++.|. .|+.++-+|..+++.+.+++..... -.=+.|..+
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~------~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~d 526 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT------LDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHK 526 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEEC------CCCeEEEEECCCCcEeeEEECCCCcccCCeEEEEC
Confidence 678889999999887776554444333344555666664 4999999999999999887643211 111334457
Q ss_pred CC-EEEE
Q 040533 322 GL-TVVS 327 (364)
Q Consensus 322 ~~-~l~~ 327 (364)
|+ |++.
T Consensus 527 GkQYvav 533 (596)
T d1w6sa_ 527 GTQYVAI 533 (596)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 75 4543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.19 E-value=0.029 Score=43.30 Aligned_cols=195 Identities=16% Similarity=0.201 Sum_probs=122.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-ceeeeeecC----CC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGH----DK 130 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~----~~ 130 (364)
..++|.-....+.++|+++.+..+...+ ...|.--.|-.+ +.|+..+ +..|+-|+++.. .+.+.+..| ..
T Consensus 74 ~~IiALrag~~LQiFnletK~klks~~~---~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~ 148 (327)
T d1utca2 74 SKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 148 (327)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEEC---SSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred CcEEEEecCCeEEEEehhHhhhhceEEc---CCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCc
Confidence 3688887888999999999887666655 456777888754 4666665 467999999543 344555444 34
Q ss_pred cEEEEEeecCCCCEEEEee---C----CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC---CEEEEEe---CCCeE
Q 040533 131 RVATASWNHWNGHILTSGS---Q----DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG---NLLASGG---DDNLV 197 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~---~----dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~---~d~~i 197 (364)
.|.....++ +.+.++..+ . .|.+.+|..+.+ ..+.+.+|...-..+.+..+. .+++.+. ..+.+
T Consensus 149 QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL 225 (327)
T d1utca2 149 QIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 225 (327)
T ss_dssp EEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred eEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccC--cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence 677777777 677665433 2 356788887644 356677776554444433211 2333322 23689
Q ss_pred EEEeCCCCCCC-cce----EEe----cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 198 HVWDHSKMSSS-KCL----HRF----RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 198 ~iwd~~~~~~~-~~~----~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
++.++.....+ ... ..+ ....+...++..++....+++.. .-|.+++||+.++.++..-.-
T Consensus 226 hIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT---K~G~i~lyDleTgt~i~~nRI 295 (327)
T d1utca2 226 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNRI 295 (327)
T ss_dssp EEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe---cCcEEEEEEcccccEEEEeec
Confidence 99998764322 111 111 11234455777777654444432 689999999999999877654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.97 E-value=0.097 Score=45.36 Aligned_cols=81 Identities=7% Similarity=0.051 Sum_probs=55.6
Q ss_pred CCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc-eeEEeecC
Q 040533 242 DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR-ILELSQSP 320 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~ 320 (364)
.|.|.-+|+.+++.+-+.....++..-..+..+..+++|. .|+.++-+|..+|+.+.+++-.... -.-+.|..
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt------~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~ 538 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT------GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeC------CCCeEEEEECCCCcEeEEEECCCCccccCEEEEE
Confidence 3678899999999998887666554433445566666664 3999999999999999887643221 11255566
Q ss_pred CCC-EEEEE
Q 040533 321 DGL-TVVSA 328 (364)
Q Consensus 321 ~~~-~l~~~ 328 (364)
+|+ |++..
T Consensus 539 ~G~qYv~i~ 547 (582)
T d1flga_ 539 DGEQYLGVT 547 (582)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 885 55443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.96 E-value=0.032 Score=44.73 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=90.3
Q ss_pred CCcEEEEEcccCcceeeeeeccc-------CcEEEEEE--cCCCC-EEEEEe---CCCeEEEEeCCCCCC-CcceEEecc
Q 040533 151 DKSIINHDVRVSNNVTSRINAHT-------AEVCGLKW--SNEGN-LLASGG---DDNLVHVWDHSKMSS-SKCLHRFRD 216 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~~~-------~~v~~~~~--~~~~~-~l~~~~---~d~~i~iwd~~~~~~-~~~~~~~~~ 216 (364)
.|.|.++|+.+.......+.... -....+.. .+++. +|++.. ...+|.+|++..... ...+..+..
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 48889999876543332222111 12334443 34555 344432 456788888754322 111122221
Q ss_pred -cccceeEEEEccCCCcEEEeec---------------CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeee
Q 040533 217 -HRAAVKALAWCPYQFNVLASGG---------------GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 217 -~~~~v~~~~~~~~~~~~~~~~~---------------g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
.....+.+++..++ .+++|-. +...+.+.-|| .++.......-...+.++++|++++++++
T Consensus 147 ~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~--~~~~~~~~~~l~~pNGI~~s~d~~~lyVa 223 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS--PNDVRVVAEGFDFANGINISPDGKYVYIA 223 (340)
T ss_dssp TTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC--SSCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred ccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEc--CCceEEEcCCCCccceeEECCCCCEEEEE
Confidence 12346788888887 4555521 11123444444 34433333444668999999999998877
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecC-CCCEEEEE
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSP-DGLTVVSA 328 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~-~~~~l~~~ 328 (364)
.. ..+.|+.|++.....+.... .-....-.+.+.+ +|.+.+++
T Consensus 224 ~t-----~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 224 EL-----LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EG-----GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred eC-----CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 53 27889999987544332211 1223456677765 44444443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.86 E-value=0.12 Score=44.76 Aligned_cols=60 Identities=12% Similarity=-0.028 Sum_probs=45.1
Q ss_pred CCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 289 ~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.|.|.-+|+.+++.+-+...+. ++..-..+..|.++++|+.||.++-+|.++++.+..+.
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 4678888999988887766432 22322334467788899999999999999999987765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.85 E-value=0.095 Score=43.48 Aligned_cols=248 Identities=13% Similarity=0.093 Sum_probs=127.8
Q ss_pred ceeecccCCCcc-EEEEEe--CC----eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC----------
Q 040533 46 YYSNMMDWGRNN-ILAIAL--GL----ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---------- 108 (364)
Q Consensus 46 ~~~~~~~~~~~~-~~~~~~--~~----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------- 108 (364)
+....+.++|++ +++.+. +| .|+++|+.+++..... +. ......++|++|++.|+....+
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-cc--cccccceEEcCCCCEEEEEEeccccCcccccc
Confidence 344556677764 555443 33 8999999999875432 21 1123578999999988765432
Q ss_pred ------CcEEEEecCCcce--eeeeecCC--CcEEEEEeecCCCCEEEEeeC---CCc--EEEEEcccCcce-------e
Q 040533 109 ------SKLQLWDAETSKL--IRNLEGHD--KRVATASWNHWNGHILTSGSQ---DKS--IINHDVRVSNNV-------T 166 (364)
Q Consensus 109 ------g~i~iw~~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~---dg~--i~~~d~~~~~~~-------~ 166 (364)
..|..+.+.+... ...+.... ..+..+..++ ++++++.... +.. +.+.|+...... .
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence 2577777766532 22333322 3455666777 7777764332 333 344454432211 1
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC-
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGG---DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD- 242 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d- 242 (364)
...........-+. +.++.+++... .++.|...++...........+..+...+..-.+...+.++++..- .+
T Consensus 281 ~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~--~~~ 357 (430)
T d1qfma1 281 KLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL--HDV 357 (430)
T ss_dssp EEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE--ETT
T ss_pred EeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEE--cCC
Confidence 11222222222222 22333333332 2467777777654332212223333444443333333446665543 33
Q ss_pred -CeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 243 -GCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 243 -~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
..|+++++.++......... +.+..+...++...+..... +-..-..++-+|+.+++.
T Consensus 358 ~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~s--s~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT--SFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE--CSSCCCEEEEEETTSSSC
T ss_pred EeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEc--CCCCCCeEEEEECCCCCc
Confidence 46899999888765554332 34555555555544443211 112357788888887753
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.68 E-value=0.043 Score=44.69 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=73.6
Q ss_pred EEEcCCCCEEEEEeCCC-----------eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 179 LKWSNEGNLLASGGDDN-----------LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 179 ~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
.....+|+.++.|+.+. .+.+||..+............+.......++.+++ .+++.|+ .....+.+
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg-~~~~~~~~ 102 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGG-NDAKKTSL 102 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECS-SSTTCEEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeec-CCCcceeE
Confidence 33445777777776421 36789988764422222222233334466788888 5666664 34578999
Q ss_pred EECCCCeEEEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 248 WNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 248 ~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
||..+..-...-.. ...-...+..++|+.++.+........-..+.+||..+.+
T Consensus 103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 99988765432221 2234567778899988887654433445678999987653
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.056 Score=41.83 Aligned_cols=108 Identities=10% Similarity=0.019 Sum_probs=49.4
Q ss_pred cEEEeecCC---CCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 232 NVLASGGGT---QDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 232 ~~~~~~~g~---~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
.+++.|+.. ....+..||..+.+....-... ....+..... +..++.+. ......-.....+|..+.+....-
T Consensus 150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~GG-~~~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
T d1zgka1 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLH-NCIYAAGG-YDGQDQLNSVERYDVETETWTFVA 227 (288)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET-TEEEEECC-BCSSSBCCCEEEEETTTTEEEECC
T ss_pred cceEecCcccccccceEEEeecccccccccccccccccccccccee-eeEEEecC-ccccccccceeeeeecceeeeccc
Confidence 455555411 2345788888776544322111 1112223322 33333332 111222345677787665433221
Q ss_pred cccccce-eEEeecCCCCEEEEEeCCCc-----EEEEEeeCC
Q 040533 307 QHQTSRI-LELSQSPDGLTVVSAAADET-----LRFWEAFGP 342 (364)
Q Consensus 307 ~~~~~~i-~~i~~~~~~~~l~~~~~dg~-----i~vw~~~~~ 342 (364)
....... .+++. .++++++.|+.++. |.+||+.+.
T Consensus 228 ~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 228 PMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence 1111111 12222 36778888776543 677887764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.54 E-value=0.13 Score=40.98 Aligned_cols=182 Identities=8% Similarity=0.033 Sum_probs=103.6
Q ss_pred ceEEEEcCCCCEEEEEe------------cCCcEEEEecCCcceee-eee--cC-----CCcEEEEEe--ecCCCC-EEE
Q 040533 90 PTSISWSQDAKTLAVGY------------MASKLQLWDAETSKLIR-NLE--GH-----DKRVATASW--NHWNGH-ILT 146 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~------------~dg~i~iw~~~~~~~~~-~~~--~~-----~~~v~~~~~--~~~~~~-~l~ 146 (364)
.-+++..|+|..+++++ ..|.|.++|+++.+... .+. +. .-....+.. .+ ++. +|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~~L~ 115 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD-DNTVYLL 115 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT-TCCEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC-CCcEEEE
Confidence 34566777776555543 14889999987653221 111 11 012234443 23 343 344
Q ss_pred Eee---CCCcEEEEEcccCcceeeeee----cccCcEEEEEEcCCCCEEEEEe-----------------CCCeEEEEeC
Q 040533 147 SGS---QDKSIINHDVRVSNNVTSRIN----AHTAEVCGLKWSNEGNLLASGG-----------------DDNLVHVWDH 202 (364)
Q Consensus 147 ~~~---~dg~i~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~ 202 (364)
+.. ...+|.+|++........... ......+.+++..++.+++|-. ..+.+.-||.
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 432 345788888865543222211 1224578888888888777731 1234444542
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe---EEEEEecCCCeEEEEEcCC-cccee
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT---CIHSVDTKAQICGLEWNRH-HKEIL 278 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~ 278 (364)
. . .......-...+.++++|+++.++++.. ..++|+.|++.... ....+......-.+.+.+. |.+.+
T Consensus 196 ~---~---~~~~~~~l~~pNGI~~s~d~~~lyVa~t--~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwv 267 (340)
T d1v04a_ 196 N---D---VRVVAEGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 267 (340)
T ss_dssp S---C---EEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred C---c---eEEEcCCCCccceeEECCCCCEEEEEeC--CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEE
Confidence 2 1 2222233456789999999988888876 78999999987543 2333445566777888764 44444
Q ss_pred ee
Q 040533 279 SG 280 (364)
Q Consensus 279 ~~ 280 (364)
++
T Consensus 268 a~ 269 (340)
T d1v04a_ 268 GC 269 (340)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.16 Score=41.02 Aligned_cols=173 Identities=10% Similarity=-0.025 Sum_probs=100.8
Q ss_pred eecccCCC-ccEEEEEeCCeEEEEECCC-----------CceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEe
Q 040533 48 SNMMDWGR-NNILAIALGLELYLWKQEN-----------GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 48 ~~~~~~~~-~~~~~~~~~~~i~iw~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 115 (364)
++.++.++ .++++++....+.|...+. ........ -..|..++|+.| .|++. .++.+..++
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~----ip~v~~vafs~d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE----IPDVIFVCFHGD--QVLVS-TRNALYSLD 111 (381)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE----CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred cceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC----CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence 56677777 4577777777888877431 11111222 235888999744 56665 456788888
Q ss_pred cCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee----eecccCcEEEEEEcCCCCEEEEE
Q 040533 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR----INAHTAEVCGLKWSNEGNLLASG 191 (364)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~ 191 (364)
..+-........-..++..+.++| ..++....+|.+.++++......... -..-.+.+.+++|++.|..++++
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred eeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence 776555544444566788888866 45666777889999998876531110 01123567888888888877776
Q ss_pred eCCCeEEEE-eCCCCCCCcceEEecccccceeEEEEccCCCcEE
Q 040533 192 GDDNLVHVW-DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 192 ~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 234 (364)
..++ ..+- ++... ..+.........|.+|.|-.+...++
T Consensus 189 ~g~~-~q~k~~i~~~---~~~~~p~~~~~~v~sI~WL~~~~F~v 228 (381)
T d1xipa_ 189 RNGE-MEKQFEFSLP---SELEELPVEEYSPLSVTILSPQDFLA 228 (381)
T ss_dssp ETTE-EEEEEEECCC---HHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred CCCc-eeeccCCCCc---cccCCCcCCCcceeEEEEecCceEEE
Confidence 4332 2211 21111 01111111234678899987653333
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.21 Score=40.33 Aligned_cols=179 Identities=7% Similarity=0.050 Sum_probs=102.6
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--------ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--------NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
....-++.++ ...++++|+.++ +.+.....-+ .........-..|..++|+.+ .|+.. .++.+..++
T Consensus 37 ~~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 37 ASLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLD 111 (381)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred cccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence 3456678887 667787777775 5566542110 000111112236888999755 45554 356688888
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE------EecCCCeEEEEEcCCcc
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS------VDTKAQICGLEWNRHHK 275 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~------~~~~~~v~~~~~~~~~~ 275 (364)
...... ......-..++..+.++|.. +++.. .++.+.++++.+++.... +.-.+.+.+++|++.|.
T Consensus 112 ~~~l~~---~~~~~~~~~~~~~~~~~p~~--~~l~~---~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk 183 (381)
T d1xipa_ 112 LEELSE---FRTVTSFEKPVFQLKNVNNT--LVILN---SVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF 183 (381)
T ss_dssp SSSTTC---EEEEEECSSCEEEEEECSSE--EEEEE---TTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE
T ss_pred eecccc---ccccccccccccceecCCce--eEEEe---cCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE
Confidence 766443 22222234568888888864 33333 589999999988764332 22346688889998888
Q ss_pred ceeeeccCCccCCCCeEEEe-eCCCCceeeeccccccceeEEeecCCCCEEEEE
Q 040533 276 EILSGHGFSSSGDGQKLCLW-KYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~-d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 328 (364)
.++++. ++...+- ++.....+.........+.+|.|-.+..++++-
T Consensus 184 q~v~~~-------g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 184 QSFAWR-------NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEEE-------TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEeC-------CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 888763 2222211 222111111111233467889988777666654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.15 E-value=0.23 Score=39.61 Aligned_cols=194 Identities=12% Similarity=0.164 Sum_probs=109.9
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc------CCCCEEEEEe-CC---CeEEEEeCCCCCCCcc
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS------NEGNLLASGG-DD---NLVHVWDHSKMSSSKC 210 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~-~d---~~i~iwd~~~~~~~~~ 210 (364)
...+++.....+-|.+||+. ++. +..+. .+.++.+..- .....+++++ .+ ..|.+|.+.... ..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~-l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~--~~ 112 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKM-LHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GT 112 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCE-EEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT--TE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcE-EEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc--cc
Confidence 45677777777779999996 443 33332 2455544432 2222345554 22 357778765321 11
Q ss_pred eEEecc-------cccceeEEEE--ccCCCc-EEEeecCCCCCeEEEEECC---CC----eEEEEEecCCCeEEEEEcCC
Q 040533 211 LHRFRD-------HRAAVKALAW--CPYQFN-VLASGGGTQDGCIKIWNVQ---KG----TCIHSVDTKAQICGLEWNRH 273 (364)
Q Consensus 211 ~~~~~~-------~~~~v~~~~~--~~~~~~-~~~~~~g~~d~~i~i~d~~---~~----~~~~~~~~~~~v~~~~~~~~ 273 (364)
+..+.. ....+..+|+ ++.... .++... .+|.+..|.+. .+ +.++.+....++..+.+.+.
T Consensus 113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~--k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde 190 (353)
T d1h6la_ 113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG--KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDE 190 (353)
T ss_dssp EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETT
T ss_pred cccccccccccccccCcceEEEEEecCCCCeEEEEEEc--CCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCC
Confidence 222221 1124667776 665433 334433 78999888763 22 45677788899999999999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCC-----Cceeeeccc--cccceeEEeec--CCCC-EE-EEEeCCCcEEEEEeeCC
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPH-----MTKWGELQH--QTSRILELSQS--PDGL-TV-VSAAADETLRFWEAFGP 342 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~--~~~~i~~i~~~--~~~~-~l-~~~~~dg~i~vw~~~~~ 342 (364)
...|+.+. ++..|+.++... ...+....+ ....+..|+.- +++. +| +|.-.+++..+||....
T Consensus 191 ~~~LyisE------E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 191 YGSLYIAE------EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp TTEEEEEE------TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CCcEEEec------CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99998884 255555555431 122222221 23456666543 2332 44 44446788999998764
Q ss_pred -CCCcce
Q 040533 343 -SGSGDF 348 (364)
Q Consensus 343 -~~~~~~ 348 (364)
+.+..|
T Consensus 265 ~~~~g~F 271 (353)
T d1h6la_ 265 NKYVADF 271 (353)
T ss_dssp CCEEEEE
T ss_pred ccccceE
Confidence 333343
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.98 E-value=0.64 Score=36.91 Aligned_cols=194 Identities=9% Similarity=0.125 Sum_probs=110.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEc------CCCCEEEEEec--C--CcEEEEecCC-cceeeeee
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWS------QDAKTLAVGYM--A--SKLQLWDAET-SKLIRNLE 126 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~l~~~~~--d--g~i~iw~~~~-~~~~~~~~ 126 (364)
+++....+.|++||++ |+...... .+.+..+..- ....-+++++. + ..|.+|.+.. ...+..+.
T Consensus 43 I~gTdK~~Gl~vYdL~-G~~l~~~~----~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~ 117 (353)
T d1h6la_ 43 LITTNKKSGLAVYSLE-GKMLHSYH----TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT 117 (353)
T ss_dssp EEEEETTSCCEEEETT-CCEEEECC----SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred EEEEcCcCCEEEEcCC-CcEEEecc----cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence 3344445679999996 44433332 3455555543 22234555552 2 2577887752 22333332
Q ss_pred cC-------CCcEEEEEe--ecCCCC-EEEEeeCCCcEEEEEcccCc------ceeeeeecccCcEEEEEEcCCCCEEEE
Q 040533 127 GH-------DKRVATASW--NHWNGH-ILTSGSQDKSIINHDVRVSN------NVTSRINAHTAEVCGLKWSNEGNLLAS 190 (364)
Q Consensus 127 ~~-------~~~v~~~~~--~~~~~~-~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (364)
.. ...+..+|+ +|.++. ++++...+|.+..|.+.... ..++.+ .....+..+.+.+....|+.
T Consensus 118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvDde~~~Lyi 196 (353)
T d1h6la_ 118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAADDEYGSLYI 196 (353)
T ss_dssp CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEETTTTEEEE
T ss_pred ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEeCCCCcEEE
Confidence 11 124566666 664554 56677788999988775332 122233 23457889999998889999
Q ss_pred EeCCCeEEEEeCCCCC--CCcceEEecc--cccceeEEEEc--cCCC-cEEEeecCCCCCeEEEEECCCC-eEEEEE
Q 040533 191 GGDDNLVHVWDHSKMS--SSKCLHRFRD--HRAAVKALAWC--PYQF-NVLASGGGTQDGCIKIWNVQKG-TCIHSV 259 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~--~~~~~~~~~~--~~~~v~~~~~~--~~~~-~~~~~~~g~~d~~i~i~d~~~~-~~~~~~ 259 (364)
+-++.-+..++..... ....+....+ ....+..|+.- +++. +++++.- -+++..+||.... +.+..+
T Consensus 197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ--G~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ--GNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG--GGTEEEEEESSTTCCEEEEE
T ss_pred ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC--CCCeEEEEecCCCccccceE
Confidence 9888777666654221 1122222211 24456666653 2333 6676654 5789999998763 555554
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=1.1 Score=34.03 Aligned_cols=222 Identities=14% Similarity=0.072 Sum_probs=98.5
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec---------CCcEEEEecCCcceeee--eecCCCcEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM---------ASKLQLWDAETSKLIRN--LEGHDKRVA 133 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~--~~~~~~~v~ 133 (364)
..+.+||+++++...+..++.....-..+.. ++..++.|+. -..+.+||..+.+.... +......-.
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~ 96 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 96 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence 4788999999887666554433222222222 5566666653 13577888776544322 111111122
Q ss_pred EEEeecCCCCEEEEeeCCCc-----EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCC
Q 040533 134 TASWNHWNGHILTSGSQDKS-----IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDHS 203 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~ 203 (364)
++.+ ++.+++.++.++. ...+|..+..............-.++... ++..++.|+.+ ..+..||..
T Consensus 97 ~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~ 172 (288)
T d1zgka1 97 VGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPE 172 (288)
T ss_dssp EEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred cccc---ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecc
Confidence 2222 6666666655443 33455544331111100000001112222 33455555433 346777765
Q ss_pred CCCCCcceEEeccc--ccceeEEEEccCCCcEEEeecCC---CCCeEEEEECCCCeEEEEEecCCC-e-EEEEEcCCccc
Q 040533 204 KMSSSKCLHRFRDH--RAAVKALAWCPYQFNVLASGGGT---QDGCIKIWNVQKGTCIHSVDTKAQ-I-CGLEWNRHHKE 276 (364)
Q Consensus 204 ~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~~~~~~~~~~~~-v-~~~~~~~~~~~ 276 (364)
.... ...... .....+..... ..+++.++.. .-.....+|..+.+....-....+ . .+++. .+++.
T Consensus 173 ~~~~----~~~~~~~~~~~~~~~~~~~--~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l 245 (288)
T d1zgka1 173 RNEW----RMITAMNTIRSGAGVCVLH--NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRI 245 (288)
T ss_dssp TTEE----EECCCCSSCCBSCEEEEET--TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEE
T ss_pred cccc----cccccccccccccccccee--eeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEE
Confidence 4321 111111 11111222222 2566665411 123567888877654432221111 1 22222 25566
Q ss_pred eeeeccCCccCCCCeEEEeeCCCC
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
++.|.. .....-..+.+||+.+.
T Consensus 246 ~v~GG~-~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 246 YVLGGY-DGHTFLDSVECYDPDTD 268 (288)
T ss_dssp EEECCB-CSSCBCCEEEEEETTTT
T ss_pred EEEecC-CCCeecceEEEEECCCC
Confidence 655532 11122345788888753
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.09 E-value=1.5 Score=31.72 Aligned_cols=217 Identities=11% Similarity=0.136 Sum_probs=109.7
Q ss_pred CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecC-CCCEEE-Ee-----eCCCcEEEEEcccCcceeeeee
Q 040533 98 DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW-NGHILT-SG-----SQDKSIINHDVRVSNNVTSRIN 170 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~-~~-----~~dg~i~~~d~~~~~~~~~~~~ 170 (364)
+.+.++++...|.+.++-+..++.++.-+ .+|.... .|. .-.++. .- -+-..|.+-++....... .+.
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~-~i~ 99 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE 99 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEE-ECT
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeee-Eec
Confidence 34578888889999999888777655332 3333221 120 111221 11 111234444544222212 222
Q ss_pred ccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEE--------EEc-cCCCcEEEeecCC
Q 040533 171 AHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL--------AWC-PYQFNVLASGGGT 240 (364)
Q Consensus 171 ~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~--------~~~-~~~~~~~~~~~g~ 240 (364)
... -.|.+++.. +.+..++|+......+|-++.+.. +.+..+.+ -+.|+.+ .+- +....++++.-
T Consensus 100 spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGkl-rkL~~vPp-FsFVtDI~~d~I~G~g~~~g~~~sfF~adl-- 174 (313)
T d2hu7a1 100 AVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGL-RELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL-- 174 (313)
T ss_dssp TSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEE-EEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEET--
T ss_pred CCceEEEEEeeec-CceEEEecccCCceEEEEEeCCce-eeeccCCC-cceEEeccCCeEEEEeeecCCcceEEEEec--
Confidence 222 456677664 445777888777788887665432 12222221 1223332 221 11111222211
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee-ccc------cccce
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQH------QTSRI 313 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~------~~~~i 313 (364)
..|.+++++... +.++.....+..+. +++ +-+.++..-| -+|+++++.... +.. ..-.|
T Consensus 175 ~SG~lri~tpke----------GS~~~ay~~~gnKV-~sd--yEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I 240 (313)
T d2hu7a1 175 SSGGLRVFDSGE----------GSFSSASISPGMKV-TAG--LETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAI 240 (313)
T ss_dssp TTEEEEEECCSS----------EEEEEEEECTTSCE-EEE--EEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEE
T ss_pred ccCCEEEecCCC----------CcccceeEccCcee-eec--cCCCCceEEE-EEecccCceeeeecCcccceeecceEE
Confidence 244455554433 34555555555554 333 2223334445 458776554321 211 12356
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+-+-+.|++++++.+-.||.-++|.
T Consensus 241 ~~~~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 241 TWLGYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred EeeeeCCCCcEEEEEecCCchheee
Confidence 6777999999999999999999986
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=90.98 E-value=2.4 Score=31.99 Aligned_cols=221 Identities=11% Similarity=0.055 Sum_probs=103.9
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
...|..++-. ....++- .||.|..|-......+..-......+..++- .....+.- .||.+..|......+..
T Consensus 25 ~~~i~~va~G--~~h~~al-~dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~---G~~~~~al-~dg~v~~wG~~~~gq~~ 97 (273)
T d1jtdb_ 25 QSGVDAIAGG--YFHGLAL-KGGKVLGWGANLNGQLTMPAATQSGVDAIAA---GNYHSLAL-KDGEVIAWGGNEDGQTT 97 (273)
T ss_dssp SSSEEEEEEC--SSEEEEE-ETTEEEEEECCTTSTTSCCGGGGSCCCEEEE---CSSEEEEE-ETTEEEEEECCTTSTTC
T ss_pred CCCcEEEEcc--CCEEEEE-ECCEEEEEeCCCCCceeeeecccccceEEec---CCCceeee-eeeeeeccCCCcceeec
Confidence 3457777653 2233333 4899999976554333222222344555543 33333332 48999999865433211
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
. .......+..++.... ..+. -.|+.+..|.-..... ..........|..++-.. ...++. .++.+.
T Consensus 98 ~-~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~---~~~~~~~~~~v~~~~~~~--~~~~~~----~~g~~~ 164 (273)
T d1jtdb_ 98 V-PAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQ---TTVPAEAQSGVTALDGGV--YTALAV----KNGGVI 164 (273)
T ss_dssp C-CGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTST---TSCCGGGGSSEEEEEECS--SEEEEE----ETTEEE
T ss_pred c-ccccccceeEEeeecc--cccc-cccccceecccCCCCc---eeeeccCCceEEEEeccc--eeeeee----ccccee
Confidence 1 1112233444443322 2222 2488899997443221 111111223344443322 123332 477888
Q ss_pred EEECCCCeEE-EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEE
Q 040533 247 IWNVQKGTCI-HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTV 325 (364)
Q Consensus 247 i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 325 (364)
.|-....... ........|..++.......++ . ||.|+-|=......+.........|..|+-... ..+
T Consensus 165 ~~G~~~~g~~~~~~~~~~~v~~Is~G~~h~~~l-~--------dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~-~~~ 234 (273)
T d1jtdb_ 165 AWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-K--------DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSL 234 (273)
T ss_dssp EEECCTTSTTSCCGGGSSSEEEEEECSSEEEEE-E--------TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEE
T ss_pred EeecccCCcccccccccCCccceeccceeeEEE-e--------cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc-eEE
Confidence 8865432111 1112234566665443322221 1 788888865433222222222344666665433 233
Q ss_pred EEEeCCCcEEEEEe
Q 040533 326 VSAAADETLRFWEA 339 (364)
Q Consensus 326 ~~~~~dg~i~vw~~ 339 (364)
+. .||.|..|=-
T Consensus 235 ~l--~~g~v~~WG~ 246 (273)
T d1jtdb_ 235 AL--KNGKVIAWGS 246 (273)
T ss_dssp EE--ETTEEEEEST
T ss_pred EE--ECCEEEEECC
Confidence 33 4899999953
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.07 E-value=5.9 Score=32.40 Aligned_cols=53 Identities=9% Similarity=0.188 Sum_probs=38.5
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee--------cCCCcEEEEEeec
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE--------GHDKRVATASWNH 139 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~~~~v~~~~~~~ 139 (364)
-...++|+|.||+++|++--..|.|++++..+++...... .-......++|+|
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P 86 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP 86 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence 3467899999999988877557999999887765432211 1235678899998
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=84.54 E-value=6.4 Score=29.43 Aligned_cols=184 Identities=13% Similarity=0.108 Sum_probs=87.7
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 208 (364)
...|..++- .....+.-. ||.|..|-.....++- .-......+..++.-.. ..++ - .|+.+..|.......
T Consensus 25 ~~~i~~va~---G~~h~~al~-dG~v~~wG~N~~GQlG-~~~~~~~~v~~v~~G~~-~~~a-l-~dg~v~~wG~~~~gq- 95 (273)
T d1jtdb_ 25 QSGVDAIAG---GYFHGLALK-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAGNY-HSLA-L-KDGEVIAWGGNEDGQ- 95 (273)
T ss_dssp SSSEEEEEE---CSSEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSCCCEEEECSS-EEEE-E-ETTEEEEEECCTTST-
T ss_pred CCCcEEEEc---cCCEEEEEE-CCEEEEEeCCCCCcee-eeecccccceEEecCCC-ceee-e-eeeeeeccCCCccee-
Confidence 445777766 444444444 8999999876554321 12223344555554222 2233 2 489999997543211
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE-EEecCCCeEEEEEcCCccceeeeccCCccC
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH-SVDTKAQICGLEWNRHHKEILSGHGFSSSG 287 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 287 (364)
..........+..++.... ..++. .|+.+..|......... .......+..++-.. ...++.
T Consensus 96 --~~~~~~~~~~~~~i~~~~~--~~~~~----~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~-------- 158 (273)
T d1jtdb_ 96 --TTVPAEARSGVDAIAAGAW--ASYAL----KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV-YTALAV-------- 158 (273)
T ss_dssp --TCCCGGGGSSCCEEEEETT--EEEEE----ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS-SEEEEE--------
T ss_pred --eccccccccceeEEeeecc--ccccc----ccccceecccCCCCceeeeccCCceEEEEeccc-eeeeee--------
Confidence 1111112233444444332 22222 47888888754321110 001112333333211 111111
Q ss_pred CCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.++.++.|-................|..|+.... +.+.-. ||.|+-|=...
T Consensus 159 ~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~ 209 (273)
T d1jtdb_ 159 KNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNR 209 (273)
T ss_dssp ETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCT
T ss_pred cccceeEeecccCCcccccccccCCccceeccce--eeEEEe-cCcEEEcCCCC
Confidence 1778888876544333222233456777765432 332223 79998886544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.06 E-value=11 Score=30.80 Aligned_cols=55 Identities=9% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee-eee------ecccCcEEEEEEcCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT-SRI------NAHTAEVCGLKWSNE 184 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~------~~~~~~v~~~~~~~~ 184 (364)
-...++|+|.| ++++|++--..|.|++++..++.... ..+ ..-......|+|+|+
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 34677999999 89888776557999999876654211 111 112356789999984
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