Citrus Sinensis ID: 040540
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 669 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.644 | 0.426 | 0.384 | 2e-74 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.644 | 0.418 | 0.371 | 4e-66 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.651 | 0.425 | 0.360 | 3e-61 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.675 | 0.410 | 0.342 | 9e-58 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.617 | 0.330 | 0.328 | 1e-55 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.563 | 0.336 | 0.343 | 1e-55 | |
| Q9SGP2 | 996 | Receptor-like protein kin | no | no | 0.859 | 0.577 | 0.293 | 2e-55 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.550 | 0.313 | 0.364 | 7e-54 | |
| P93194 | 1109 | Receptor-like protein kin | N/A | no | 0.641 | 0.386 | 0.315 | 8e-54 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.633 | 0.385 | 0.348 | 4e-53 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 168/437 (38%), Positives = 252/437 (57%), Gaps = 6/437 (1%)
Query: 9 TDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIP 68
TD+ +LL FK+ + + + ++W+ S+P+C+W G++CG +++RVT L L + LGG I
Sbjct: 24 TDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVIS 83
Query: 69 LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128
GNLSFLVSLD+ EN F G +P+E+GQL RL + + N L G P + S+L L
Sbjct: 84 PSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNL 143
Query: 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP 188
RLD N G +P+ L +L+ L L N + G +P+ +GNL L L L NL+G+IP
Sbjct: 144 RLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIP 203
Query: 189 TEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEY 248
+++ L + +L L N SG+ PP ++N+S++++L + N SGRL +G L N+
Sbjct: 204 SDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLS 263
Query: 249 LALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTES 308
+ N G IP +++N + L L + N+ +G IP TFGN+ +L +L + N+L ++S
Sbjct: 264 FNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDS 322
Query: 309 SSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI 368
S FL+SLTNC L L + N LGG LP I N SA L +LG ++G+I
Sbjct: 323 SR--DLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKL---VTLDLGGTLISGSI 377
Query: 369 PTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRE 428
P IG L LQ + +N L G +P L L L L+L N+LSG IP + ++T L
Sbjct: 378 PYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLET 437
Query: 429 LHLGSNKLSSSIPSSLA 445
L L +N +P+SL
Sbjct: 438 LDLSNNGFEGIVPTSLG 454
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 163/439 (37%), Positives = 243/439 (55%), Gaps = 8/439 (1%)
Query: 9 TDQSSLLAFKAHAFD--YRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGT 66
TD +LL FK+ + R LA+ W+ S P C+W G++CG R +RV +LNL L G
Sbjct: 30 TDMQALLEFKSQVSENNKREVLAS-WNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGV 88
Query: 67 IPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLR 126
I GNLSFL L++++N+F +P+++G+L RL+ ++++YN L G PS + S+L
Sbjct: 89 ISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLS 148
Query: 127 ILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ 186
+ L N+ +P+ L +LS+L +L N + G P+ +GNL L L ++G+
Sbjct: 149 TVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208
Query: 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNI 246
IP E+ L + +A N SG PP ++NIS++ L+L N SG L + G+ L N+
Sbjct: 209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNL 268
Query: 247 EYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306
L L TN G IP ++ N + L D+ N SG IP +FG LR+L L + N+L
Sbjct: 269 RRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGN 328
Query: 307 ESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNG 366
SSS + F+ ++ NC L L + N LGG LP I N S +L +++ LG N ++G
Sbjct: 329 NSSSGLE--FIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLF---LGQNLISG 383
Query: 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSL 426
TIP IG L LQ + N L G +P L L +++L N +SG IP ++T L
Sbjct: 384 TIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRL 443
Query: 427 RELHLGSNKLSSSIPSSLA 445
++LHL SN IP SL
Sbjct: 444 QKLHLNSNSFHGRIPQSLG 462
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 242/441 (54%), Gaps = 5/441 (1%)
Query: 9 TDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIP 68
TD+ +LL FK+ + + +W+ S P+CSW G+ CG +H+RVT ++L + L G +
Sbjct: 39 TDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVS 98
Query: 69 LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128
GNLSFL SL++++N FHG +P E+G L RL+ ++++ N G P + S L L
Sbjct: 99 PFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTL 158
Query: 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP 188
L N+ +P +LS+L +L N + G P+ +GNL L L ++G+IP
Sbjct: 159 DLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIP 218
Query: 189 TEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEY 248
+I L+ + +A NK +G+ PP I+N+S++ L++ N SG L G L N++
Sbjct: 219 GDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQI 278
Query: 249 LALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTES 308
L + N+ G IP +++N + L LD+ N +G IP +FG R ++L + +NN + +
Sbjct: 279 LYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFG--RLQNLLLLGLNNNSLGN 336
Query: 309 SSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI 368
S+ FL +LTNC L L + N LGG LP I N S L + LG N ++G+I
Sbjct: 337 YSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTEL---SLGGNLISGSI 393
Query: 369 PTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRE 428
P IG L LQ + EN L G +P L L L + L N LSG IP L +++ L
Sbjct: 394 PHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTY 453
Query: 429 LHLGSNKLSSSIPSSLAFRSF 449
L+L +N SIPSSL S+
Sbjct: 454 LYLLNNSFEGSIPSSLGSCSY 474
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 169/493 (34%), Positives = 244/493 (49%), Gaps = 41/493 (8%)
Query: 7 LTTDQSSLLAFKAHAFDYRSALAN-NWSISYPICSWAGISCG--SRHQRVTALNLSDM-- 61
L + LL K+ D + L N N + S P C W G+ C S V +LNLS M
Sbjct: 27 LNLEGQYLLEIKSKFVDAKQNLRNWNSNDSVP-CGWTGVMCSNYSSDPEVLSLNLSSMVL 85
Query: 62 ----------------------GLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLR 99
GL G IP GN S L L ++ N F G +P E+G+L
Sbjct: 86 SGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLV 145
Query: 100 RLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNII 159
L + + N++SGS P IG L L L NN +G +P S+ NL RL RA N+I
Sbjct: 146 SLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMI 205
Query: 160 GGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNIS 219
G++PS IG LV LGL L G++P EIG L+ L + L +N+ SG IP I N +
Sbjct: 206 SGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCT 265
Query: 220 TMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNS 279
++ L L NQL G +P +G L+++E+L L N L G IP I N + I +D N+
Sbjct: 266 SLETLALYKNQLVGPIPKELG-DLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENA 324
Query: 280 FSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGI 339
+G IP GN+ L +L + N LT + L+ +NLS L L+ N L G
Sbjct: 325 LTGEIPLELGNIEGLELLYLFENQLTG--------TIPVELSTLKNLSKLDLSINALTGP 376
Query: 340 LPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHL 399
+P +G L+ ++ +L N L+GTIP +G L + +N+L G +P LC
Sbjct: 377 IP--LG--FQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLH 432
Query: 400 ERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNV 459
+ ILNL N LSG+IP + + +L +L L N L PS+L + + E+ +N
Sbjct: 433 SNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNR 492
Query: 460 RHRNLIKIISSCS 472
++ + + +CS
Sbjct: 493 FRGSIPREVGNCS 505
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 149/454 (32%), Positives = 235/454 (51%), Gaps = 41/454 (9%)
Query: 30 NNWSISYPICSWAGISCGSRHQ-RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFH 88
N+ +I+Y CSW G++C + RV ALNL+ +GL G+I FG L+ LD+S NN
Sbjct: 51 NSDNINY--CSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLV 108
Query: 89 GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSR 148
G +P L L L + L N+L+G PS +G L +R LR+ N G IP +L NL
Sbjct: 109 GPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVN 168
Query: 149 LEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208
L+ML + G IPS++G L ++ +L L L+G IP E+G+ +L A+N L+
Sbjct: 169 LQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLN 228
Query: 209 GLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNAT 268
G IP + + + IL L +N L+G +PS +G + ++YL+L N L G IP S+ +
Sbjct: 229 GTIPAELGRLENLEILNLANNSLTGEIPSQLGE-MSQLQYLSLMANQLQGLIPKSLADLG 287
Query: 269 KLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT--------TESSSADQWSFLSS- 319
L LDL N+ +G IP F N+ L L + N+L+ + +++ +Q +
Sbjct: 288 NLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQ 347
Query: 320 --------LTNCRNLSNLALASNPLGGILPQ-----------------LIGNFSASLQNI 354
L+ C++L L L++N L G +P+ L G S S+ N+
Sbjct: 348 LSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNL 407
Query: 355 YAFE---LGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNK 411
+ L N+L G +P I L++L+ ++ EN G +P ++ + L ++++ GN
Sbjct: 408 TNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNH 467
Query: 412 LSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLA 445
G IPP + L L LHL N+L +P+SL
Sbjct: 468 FEGEIPPSIGRLKELNLLHLRQNELVGGLPASLG 501
|
Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 151/440 (34%), Positives = 227/440 (51%), Gaps = 63/440 (14%)
Query: 31 NWSISYPICSWAGISCGSRHQRVTALNLSDMG-------------------------LGG 65
N + S+ SW G+SC SR + LNL++ G L G
Sbjct: 58 NTNTSFSCTSWYGVSCNSRGS-IEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSG 116
Query: 66 TIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKL 125
TIP FGNLS L+ D+S N+ G + LG L+ L V+ L N L+ PS +G + +
Sbjct: 117 TIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESM 176
Query: 126 RILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG 185
L L N TG IP+SL NL L +L N + G IP +GN+ + +L L L G
Sbjct: 177 TDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTG 236
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN 245
IP+ +G+L+NL L L +N L+G+IPP I N+ +M L L N+L+G +PS++G+ L+N
Sbjct: 237 SIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGN-LKN 295
Query: 246 IEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT 305
+ L+L N L G IP + N +I L+L N +G IP++ GNL++L++L + N LT
Sbjct: 296 LTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLT 355
Query: 306 TESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN 365
G++P +GN ++++ +L N L
Sbjct: 356 --------------------------------GVIPPELGN----MESMIDLQLNNNKLT 379
Query: 366 GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTS 425
G+IP+S G L+ L Y+ N L G +P +L ++E + L+LS NKL+G +P + T
Sbjct: 380 GSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTK 439
Query: 426 LRELHLGSNKLSSSIPSSLA 445
L L+L N LS +IP +A
Sbjct: 440 LESLYLRVNHLSGAIPPGVA 459
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 190/647 (29%), Positives = 288/647 (44%), Gaps = 72/647 (11%)
Query: 63 LGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVL 122
L G +P G S L LD+SEN F G LP +L L + + +N SG P +
Sbjct: 336 LTGGLPKDLGLNSPLRWLDVSENEFSGDLPADLCAKGELEELLIIHNSFSGVIPESLADC 395
Query: 123 SKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN 182
L +RL YN F+G +P + L + +L N G I IG L L L +
Sbjct: 396 RSLTRIRLAYNRFSGSVPTGFWGLPHVNLLELVNNSFSGEISKSIGGASNLSLLILSNNE 455
Query: 183 LQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHS 242
G +P EIGSL NL L + NK SG +P ++ ++ + L L NQ SG L S I S
Sbjct: 456 FTGSLPEEIGSLDNLNQLSASGNKFSGSLPDSLMSLGELGTLDLHGNQFSGELTSGI-KS 514
Query: 243 LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMN 302
+ + L L+ N GKIP+ I + + L LDL N FSG IP + +L+ L+ LN+ N
Sbjct: 515 WKKLNELNLADNEFTGKIPDEIGSLSVLNYLDLSGNMFSGKIPVSLQSLK-LNQLNLSYN 573
Query: 303 NLTTE---SSSADQW--SFLSSLTNCRNLSNLALASNPLG--GILPQLIGNFSAS----L 351
L+ + S + D + SF+ + C ++ L + N G + L F + L
Sbjct: 574 RLSGDLPPSLAKDMYKNSFIGNPGLCGDIKGLCGSENEAKKRGYVWLLRSIFVLAAMVLL 633
Query: 352 QNIYAFELGFNDLNG--TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSG 409
+ F + + S TL G+ H++ LE L+ N+ G
Sbjct: 634 AGVAWFYFKYRTFKKARAMERSKWTLMSFHKL--------GFSEHEI--LESLDEDNVIG 683
Query: 410 NKLSGHIPPCL---ASLTSLRELHLGSNKLSSSIPSSLAFR------SFDSECEVLRNVR 460
SG + + +++ L GS K + ++ +F++E E L +R
Sbjct: 684 AGASGKVYKVVLTNGETVAVKRLWTGSVKETGDCDPEKGYKPGVQDEAFEAEVETLGKIR 743
Query: 461 HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY-SHNYFLDILERLNIMIDVGSALEYL 519
H+N++K+ CS D K LV E+MPNGSL L+ S L R I++D L YL
Sbjct: 744 HKNIVKLWCCCSTRDCKLLVYEYMPNGSLGDLLHSSKGGMLGWQTRFKIILDAAEGLSYL 803
Query: 520 RHGHSSAPIIHCE----------------------------GEDSVTQTTTMATIGYMAP 551
H S PI+H + G+ + + + GY+AP
Sbjct: 804 HH-DSVPPIVHRDIKSNNILIDGDYGARVADFGVAKAVDLTGKAPKSMSVIAGSCGYIAP 862
Query: 552 EYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHR-LSEVVDT 610
EY V+ K D+YS+GV+++E TRKRP D GE L +WV +L + + V+D
Sbjct: 863 EYAYTLRVNEKSDIYSFGVVILEIVTRKRPVDPEL-GEKDLVKWVCSTLDQKGIEHVIDP 921
Query: 611 NLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
L + F ++ I+++ L C P R M L++I
Sbjct: 922 KL---DSCFKEEIS---KILNVGLLCTSPLPINRPSMRRVVKMLQEI 962
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 148/406 (36%), Positives = 212/406 (52%), Gaps = 38/406 (9%)
Query: 63 LGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVL 122
L G+IP+ G L+ L LD+S N G +P++ G L L+ + L N L G P+ IG
Sbjct: 204 LTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNC 263
Query: 123 SKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN 182
S L L L N TG IP L NL +L+ LR N + +IPS + L +L +LGL +
Sbjct: 264 SSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENH 323
Query: 183 LQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHS 242
L G I EIG L++L+ L L N +G P +I N+ + +LT+ N +SG LP+ +G
Sbjct: 324 LVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL- 382
Query: 243 LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMN 302
L N+ L+ N L G IP+SI+N T L LDL N +G IP FG + +L+ +++ N
Sbjct: 383 LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRM-NLTFISIGRN 441
Query: 303 NLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFN 362
+ T E + NC NL L++A N L G L LIG LQ + ++ +N
Sbjct: 442 HFTGE--------IPDDIFNCSNLETLSVADNNLTGTLKPLIG----KLQKLRILQVSYN 489
Query: 363 DLNGTIPTSIGTLQQL------------------------QGFYVPENNLQGYVPHDLCH 398
L G IP IG L+ L QG + N+L+G +P ++
Sbjct: 490 SLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFD 549
Query: 399 LERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444
++ L++L+LS NK SG IP + L SL L L NK + SIP+SL
Sbjct: 550 MKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASL 595
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 145/460 (31%), Positives = 222/460 (48%), Gaps = 31/460 (6%)
Query: 7 LTTDQSSLLAFKAHAFDYRSALANNWSISYPI-CSWAGISCGSRHQRVTALNLSDMGLGG 65
L +D ++LL+ H S + +W+ S CSW G+ C R Q V LNLS G+ G
Sbjct: 24 LNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVEC-DRRQFVDTLNLSSYGISG 82
Query: 66 TIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKL 125
+L L + +S N F G +P +LG L + L+ N +G+ P +G L L
Sbjct: 83 EFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNL 142
Query: 126 RILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG 185
R L L +N+ GP P SL ++ LE + N + G+IPS IGN+ +L L L G
Sbjct: 143 RNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSG 202
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN 245
+P+ +G++ L+ L L DN L G +P T+ N+ + L + +N L G +P S +
Sbjct: 203 PVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDF-VSCKQ 261
Query: 246 IEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT 305
I+ ++LS N G +P + N T L + SG IP+ FG L L L + N+ +
Sbjct: 262 IDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFS 321
Query: 306 TESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSA---------------- 349
L C+++ +L L N L G +P +G S
Sbjct: 322 GR--------IPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVP 373
Query: 350 ----SLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNIL 405
+Q++ + +L N+L+G +P + L+QL + EN+ G +P DL L +L
Sbjct: 374 LSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLEVL 433
Query: 406 NLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLA 445
+L+ N +GHIPP L S L+ L LG N L S+PS L
Sbjct: 434 DLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLG 473
|
Possible role in short-day photoperiod floral induction. Ipomoea nil (taxid: 35883) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 225/462 (48%), Gaps = 38/462 (8%)
Query: 7 LTTDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGT 66
L + LL FKA D LA+ + C+W GI+C + + VT+++L+ M L GT
Sbjct: 24 LNEEGRVLLEFKAFLNDSNGYLASWNQLDSNPCNWTGIAC-THLRTVTSVDLNGMNLSGT 82
Query: 67 ------------------------IPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLR 102
IP L LD+ N FHG +P +L + L+
Sbjct: 83 LSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLK 142
Query: 103 VMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGT 162
+ L N L GS P IG LS L+ L + NN TG IP S+ L +L ++RA N G
Sbjct: 143 KLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGV 202
Query: 163 IPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMR 222
IPS I L LGL L+G +P ++ LQNL +L L N+LSG IPP++ NIS +
Sbjct: 203 IPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLE 262
Query: 223 ILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSG 282
+L L N +G +P IG L ++ L L TN L G+IP I N +D N +G
Sbjct: 263 VLALHENYFTGSIPREIG-KLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTG 321
Query: 283 HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQ 342
IP FG++ +L +L++ N L L LT L L L+ N L G +PQ
Sbjct: 322 FIPKEFGHILNLKLLHLFENILLGPIPRE-----LGELT---LLEKLDLSINRLNGTIPQ 373
Query: 343 LIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERL 402
+ F L ++ F+ N L G IP IG + N+L G +P C + L
Sbjct: 374 EL-QFLPYLVDLQLFD---NQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTL 429
Query: 403 NILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444
+L+L NKLSG+IP L + SL +L LG N+L+ S+P L
Sbjct: 430 ILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIEL 471
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 669 | ||||||
| 297740829 | 1892 | unnamed protein product [Vitis vinifera] | 0.961 | 0.339 | 0.382 | 1e-134 | |
| 297743586 | 737 | unnamed protein product [Vitis vinifera] | 0.925 | 0.839 | 0.392 | 1e-127 | |
| 302143440 | 929 | unnamed protein product [Vitis vinifera] | 0.893 | 0.643 | 0.401 | 1e-119 | |
| 297740823 | 791 | unnamed protein product [Vitis vinifera] | 0.892 | 0.754 | 0.412 | 1e-112 | |
| 147866276 | 1326 | hypothetical protein VITISV_033547 [Viti | 0.872 | 0.440 | 0.389 | 1e-108 | |
| 302143445 | 2843 | unnamed protein product [Vitis vinifera] | 0.769 | 0.181 | 0.374 | 1e-107 | |
| 297740824 | 725 | unnamed protein product [Vitis vinifera] | 0.866 | 0.8 | 0.387 | 1e-103 | |
| 302143439 | 830 | unnamed protein product [Vitis vinifera] | 0.871 | 0.702 | 0.353 | 1e-103 | |
| 255585401 | 843 | serine-threonine protein kinase, plant-t | 0.892 | 0.708 | 0.388 | 1e-101 | |
| 296086336 | 628 | unnamed protein product [Vitis vinifera] | 0.829 | 0.883 | 0.372 | 1e-101 |
| >gi|297740829|emb|CBI31011.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 316/826 (38%), Positives = 434/826 (52%), Gaps = 183/826 (22%)
Query: 9 TDQSSLLAFKAH-AFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTI 67
D+ +L+A KAH +D + LA NWS C+W GISC + QRV+A+NLS+MGL GTI
Sbjct: 1077 VDEFALIALKAHITYDSQGILATNWSTKSSYCNWYGISCNAPQQRVSAINLSNMGLEGTI 1136
Query: 68 PLHFGNLSFLV-SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLR 126
GNLSFL+ L++ N G +P+ + L +L + L N+L G P + L L+
Sbjct: 1137 APQVGNLSFLLQQLNLFNNKLVGGIPEAICNLSKLEELYLGNNQLIGEIPKKMNHLQNLK 1196
Query: 127 ILRLDYNNFTGPIPNSLFNLS------------------RLEMLRAEFNIIGGTIPSRIG 168
+L NN TG IP ++FN+S +L+++ +N G+IP+ IG
Sbjct: 1197 VLSFPMNNLTGSIPATIFNISSLLNISLSNNNLSGSQCIQLQVISLAYNDFTGSIPNGIG 1256
Query: 169 NLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLES 228
NL + ++L + G IP IGSL NL+ L L NKL+G IP I N+S + IL L S
Sbjct: 1257 NLLRGLSLSI--NQFTGGIPQAIGSLSNLEELYLNYNKLTGGIPREIGNLSNLNILQLGS 1314
Query: 229 -------------NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDL 275
N LSG+LP+T+ R + LAL N G IP I N +KL +DL
Sbjct: 1315 NGISGPIPAEIFTNHLSGQLPTTLSLC-RELLSLALPMNKFTGSIPREIGNLSKLEEIDL 1373
Query: 276 GFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNP 335
NS G IP +FGNL L L + + E S + S++N L+ L+L+ N
Sbjct: 1374 SENSLIGSIPTSFGNLMTLKFLRLYIG--INEFSG----TIPMSISNMSKLTVLSLSDNS 1427
Query: 336 LGGILPQLIGNFSASLQ---------------------NIYAFELGFNDLNGTIPTSIGT 374
G LP +GN +L+ N+ +LG NDL G+IPT++G
Sbjct: 1428 FTGTLPNSLGNLPIALEIFIASACQFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGQ 1487
Query: 375 LQQLQGFYVPENNLQGYVPHDLCHLERL--------------NI---------------- 404
LQ+LQ + N ++G +P+DLCHL+ L NI
Sbjct: 1488 LQKLQALSIVGNRIRGSIPNDLCHLKNLGYLQLSLDSNVLAFNIPMSFWSLRDLLVLNLS 1547
Query: 405 ---------------LNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSF 449
L+LS N LSG IP L +L L+ L++ NKL IP+ F F
Sbjct: 1548 SNFLTEFGDLVSLESLDLSQNNLSGTIPKTLEALIYLKYLNVSFNKLQGEIPNGGPFVKF 1607
Query: 450 ----------------------------------------------DSECEVLRNVRHRN 463
+SECEV++ +RHRN
Sbjct: 1608 TAESFMFNEALCGAPHFQVMAWVLSNGLTVAIKVFNLEFQGALRSFNSECEVMQGIRHRN 1667
Query: 464 LIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523
L++II+ CSN DFKALVL++MPNGSLEK LYSH YFLD+++RLNIMIDV SALEYL H
Sbjct: 1668 LVRIITCCSNLDFKALVLKYMPNGSLEKLLYSHYYFLDLIQRLNIMIDVASALEYLHHDC 1727
Query: 524 SSAPIIHCEGE--------------------------DSVTQTTTMATIGYMAPEYGSEG 557
SS ++HC+ + +S+ QT T++TIGYMAPE+GS G
Sbjct: 1728 SSL-VVHCDLKPSNVLLDDDMVAHVADFGIAKLLTETESMQQTKTLSTIGYMAPEHGSAG 1786
Query: 558 IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLV-REE 616
IVS K DVYSYG+LLME F RK+P DEMFTG+++L+ WV ESL + + +VVD NL+ RE+
Sbjct: 1787 IVSTKSDVYSYGILLMEVFARKKPMDEMFTGDLTLKTWV-ESLSNSVIQVVDVNLLRRED 1845
Query: 617 QAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVKFL 662
+ + K+ CL SIM LAL C +SP++R+ M DA +LKK ++K L
Sbjct: 1846 EDLATKLSCLSSIMALALACTTDSPEERIDMKDAVVELKKSRIKLL 1891
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743586|emb|CBI36453.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 293/746 (39%), Positives = 407/746 (54%), Gaps = 127/746 (17%)
Query: 9 TDQSSLLAFKAHAFD-YRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTI 67
TDQS+LLAFK+ D S L NW+ C+W G+SC R QRVTAL L GL GT+
Sbjct: 32 TDQSALLAFKSDIIDPTHSILGGNWTQETSFCNWVGVSCSRRRQRVTALRLQKRGLKGTL 91
Query: 68 PLHFGNLSFLVSLDISENNFHGHLPKELGQLR-------RLRVMSLAYNKLSGSFPSWIG 120
+ GNLSF+V LD+S N+F GHLP ELG L +L + L N L G+ PS +G
Sbjct: 92 SPYLGNLSFIVLLDLSNNSFGGHLPYELGHLYQELGILPKLDSLLLGGNNLRGTIPSSLG 151
Query: 121 VLSKLRIL---RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLG 177
+S L L L YN F G IP + +L LE L N + G IPS IGN+ L L
Sbjct: 152 NISTLEELLFASLSYNRFDGQIPEEIGSLRNLEELYLGGNHLTGPIPSSIGNISSLQILF 211
Query: 178 LWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE--SNQLSGRL 235
L +QG IP+ +G+L NL L L N+L+G IP IFNIS+++IL+++ +N +G +
Sbjct: 212 LEDNKIQGSIPSTLGNLLNLSYLVLELNELTGAIPQEIFNISSLQILSIDIGNNLFTGPI 271
Query: 236 PSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS 295
P ++G+ L+ ++ L+L N L G IP+ I + L L+LG N+ +G+IP+T G L +L
Sbjct: 272 PPSLGN-LKFLQTLSLGENQLKGHIPSGIGSLKNLGTLELGDNNLNGNIPSTIGRLENLQ 330
Query: 296 VLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIY 355
+N+ N L + L R+L L+L +N L G +P IGN S LQ ++
Sbjct: 331 RMNIFNNEL--------EGPIPEELCGLRDLGELSLYNNKLSGSIPHCIGNLS-RLQKLF 381
Query: 356 AFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGH 415
L N L +IPT + +L L + N+L G +P D+ L + ++LS NKL G+
Sbjct: 382 ---LSSNSLTSSIPTGLWSLGNLLFLNLSFNSLGGSLPSDMGTLTVIEDIDLSWNKLIGN 438
Query: 416 IPPCLASLTSLRELHLGSNKLSSSIPSSL------------------------------- 444
IP L + SL L+L N +IP +L
Sbjct: 439 IPGILGTFESLYSLNLSRNSFQEAIPETLGKTQESKTKQVLLKYVLPGIAAVVVFGALYY 498
Query: 445 -----------------AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNG 487
AF+SFD+EC+VL +RHRNLIK+ISSCSN D +ALVL++M NG
Sbjct: 499 MLKNYRKVKVLNLRLEGAFKSFDAECKVLARIRHRNLIKVISSCSNLDVRALVLQYMSNG 558
Query: 488 SLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDS----------- 536
SLEKWLYSHNY L++ +R++IM+DV ALEYL H S P++HC+ + S
Sbjct: 559 SLEKWLYSHNYCLNLFQRVSIMLDVALALEYLHHSQSE-PVVHCDLKPSNVLLDDDMVAH 617
Query: 537 ---------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
VTQT T+ T+GY+APEYGSEG VS K DVYSYG++L+E FTRK+P
Sbjct: 618 VGDFGLAKILVENKVVTQTKTLGTLGYIAPEYGSEGRVSTKGDVYSYGIMLLEIFTRKKP 677
Query: 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641
TDEMF+ E+++ + + + LL+IM+L L+C + P
Sbjct: 678 TDEMFSEELNV--------------------------MATQSNLLLAIMELGLECSRDLP 711
Query: 642 DKRMHMTDAAAKLKKIKVKFLDDVAA 667
++R + D KL KIK++FL A
Sbjct: 712 EERKGIKDVVVKLNKIKLQFLRRTRA 737
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143440|emb|CBI22001.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 290/722 (40%), Positives = 388/722 (53%), Gaps = 124/722 (17%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
++ LN+ D G G IP FGNL+ L L+++ENN G++P ELG L L+ + L+ N L+
Sbjct: 219 LSNLNILDFGFTGNIPPSFGNLTALQVLELAENNIPGNIPSELGNLINLQYLKLSANNLT 278
Query: 113 GSFPSWIGVLSKL-------------------------RILRLDYNNFTGPIPNSLFNLS 147
G P I +S L R L L N FTG IP ++ +LS
Sbjct: 279 GIIPEAIFNISSLQEIDFSNNSLSGCEIPSSLSHCPHLRGLSLSLNQFTGGIPQAIGSLS 338
Query: 148 RLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKL 207
LE L +N + G IP IGNL L L S + G IP EI ++ +L+ DL DN L
Sbjct: 339 NLEELYLAYNNLVGGIPREIGNLSNLNILDFGSSGISGPIPPEIFNISSLQIFDLTDNSL 398
Query: 208 SGL-IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266
G IPP+ N++ ++ L L N + G +P+ +G+ L N++ L LS NNL G IP +I N
Sbjct: 399 LGSNIPPSFGNLTALQDLELGDNNIQGNIPNELGN-LINLQNLKLSENNLTGIIPEAIFN 457
Query: 267 ATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCR-- 324
+KL L L N FSG +P+ GNLR L LN+ N LT E S A + FL+SLTNC
Sbjct: 458 ISKLQSLSLAQNHFSGSLPSNLGNLRRLEFLNLGSNQLTDEHS-ASEVGFLTSLTNCNFL 516
Query: 325 -----------------------NLSNLALASNPLGGILPQ-------------LIGNFS 348
+L L +A N L G +P +I
Sbjct: 517 RTLWIEDNPLKGILPNSLGNLSISLEKLGIAGNRLRGSIPNDLCRLKNLGYLFLIIPKSL 576
Query: 349 ASLQNIYAFELGFNDLNGTIPTSIGTLQQL--QGFYVPE---NNLQGYVPHD-------- 395
+L + + FN L G IP G + F E NL+ P D
Sbjct: 577 KALTYLKYLNVSFNKLQGEIPDG-GPFMNFTAESFIFNEALRKNLEVPTPIDSWLPGSHE 635
Query: 396 -LCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG--SNKLSSSIPS-----SLAFR 447
+ H + L N G L SL ++ G SN L+ ++ AFR
Sbjct: 636 KISHQQLLYATNYFGED-------NLIGKGSLSMVYKGVLSNGLTVAVKVFNLEFQGAFR 688
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLN 507
SFDSECEV++++RHRNL+KII+ CSN DFKALVLE+MP GSL+KWLYSHNYFLD+++RLN
Sbjct: 689 SFDSECEVMQSIRHRNLVKIITCCSNLDFKALVLEYMPKGSLDKWLYSHNYFLDLIQRLN 748
Query: 508 IMIDVGSALEYLRHGHSSAPIIHCEGE--------------------------DSVTQTT 541
IMIDV SALEYL H S ++HC+ + +S+ QT
Sbjct: 749 IMIDVASALEYLHHDCPSL-VVHCDLKPNNILLDDDMVAHVGDFGIARLLTETESMQQTK 807
Query: 542 TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP 601
T+ TIGYMAPEYGS+GIVS K DV+SYG++LME F RK+P DEMF G+++L+ WV ESL
Sbjct: 808 TLGTIGYMAPEYGSDGIVSTKGDVFSYGIMLMEVFARKKPMDEMFNGDLTLKSWV-ESLA 866
Query: 602 HRLSEVVDTNLV-REEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVK 660
+ EVVD NL+ RE++ F+ K+ CL SIM LAL C +SP++R+ M D LKKIK++
Sbjct: 867 DSMIEVVDANLLRREDEDFATKLSCLSSIMALALACTTDSPEERIDMKDVVVGLKKIKIE 926
Query: 661 FL 662
L
Sbjct: 927 LL 928
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740823|emb|CBI31005.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 287/696 (41%), Positives = 378/696 (54%), Gaps = 99/696 (14%)
Query: 28 LANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVS-LDISENN 86
LA NWS CSW GISC + QRV+A+N S+MGL GTI GNLSFL+ L++ N
Sbjct: 2 LATNWSTKSSHCSWYGISCNAPQQRVSAINSSNMGLEGTIAPQVGNLSFLLQQLNLFNNK 61
Query: 87 FHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNL 146
G +P+ + L +L + L N+L G P + L L+IL NN TG IP ++FN+
Sbjct: 62 LVGSIPEAICNLSKLEELYLGNNQLIGEIPKKMSNLLNLKILSFPMNNLTGSIPTTIFNM 121
Query: 147 SRLEMLRAEFNIIGGTIPSRI--GNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLAD 204
S L + +N + G++P I NL KL L L S +L G++PTEIG L NL L LA
Sbjct: 122 SSLLNISLSYNSLSGSLPMDICYTNL-KLKELNLSSNHLSGKVPTEIGILSNLNILHLAS 180
Query: 205 NKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI 264
+ ++G IP IFNIS++ + +N LSG LP I L N++ L LS N+L IP I
Sbjct: 181 SGINGPIPAEIFNISSLHRIDFTNNSLSGGLPMDICKHLPNLQGLYLSQNHL-RTIPEDI 239
Query: 265 TNATKLIGLDLGFNSFSGHIPNTFGN-LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNC 323
N +KL L L N SG +P++ L L L + N E S FL+SLTNC
Sbjct: 240 FNISKLQTLALAQNHLSGGLPSSISTWLPDLEGLFIGGN----EFSGTIPVGFLTSLTNC 295
Query: 324 RNLSNLALASNPLGGILPQLIGNFSASLQ---------------------NIYAFELGFN 362
+ L L + NPL G LP +GN S +L+ N+ +LG N
Sbjct: 296 KFLRTLWIDYNPLKGTLPNSLGNLSVALESFTASACHFRGTIPTGIGNLTNLIWLDLGAN 355
Query: 363 DLNG------------TIPTSIGTLQQLQGFYV----PENNLQGYVPHD---------LC 397
DL G I +G++ L F V ++N + P D +
Sbjct: 356 DLTGFQHSYTKSFILKYILLPVGSIVTLVAFIVLWIRRQDNTEIPAPIDSWLPGAHEKIS 415
Query: 398 HLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG--SNKLSSSIPS-----SLAFRSFD 450
+ L N G L SL ++ G SN L+ +I A RSFD
Sbjct: 416 QQQLLYATNDFGED-------NLIGKGSLGMVYKGVLSNGLTVAIKVFNLEFQGALRSFD 468
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMI 510
SECEV++ + HRNLI+II+ CSN DFKALVLE+MP GSL+KWLYSHNYFLD+ +RLNIMI
Sbjct: 469 SECEVMQGICHRNLIRIITCCSNLDFKALVLEYMPKGSLDKWLYSHNYFLDLFQRLNIMI 528
Query: 511 DVGSALEYLRHGHSSAPIIHCEGE--------------------------DSVTQTTTMA 544
DV ALEYL H SS ++HC+ + +S+ QT T+
Sbjct: 529 DVALALEYLHHDCSSL-VVHCDLKPSNVLLDNNMVAHVADFGIARLLTETESMQQTKTLG 587
Query: 545 TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRL 604
TIGYMAPEYGS+GIVS K DVYSYG+LLME F RK+P DEMFTG+++L+ WV ESL +
Sbjct: 588 TIGYMAPEYGSDGIVSTKGDVYSYGILLMEVFARKKPMDEMFTGDVTLKTWV-ESLSSSV 646
Query: 605 SEVVDTNLVREE-QAFSAKMDCLLSIMDLALDCCME 639
EVVD NL+R + + + K+ L S+M LAL M
Sbjct: 647 IEVVDANLLRRDNEDLATKLSYLSSLMALALASKMH 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866276|emb|CAN79935.1| hypothetical protein VITISV_033547 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 263/676 (38%), Positives = 364/676 (53%), Gaps = 92/676 (13%)
Query: 65 GTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGV-LS 123
G+IP FGNL L L + NN G +P+ + + +L+ ++LA N LSG FPS IG L
Sbjct: 664 GSIPTSFGNLKALKFLQLGSNNLTGMIPEGIFNISKLQTLALAQNHLSGGFPSSIGTWLL 723
Query: 124 KLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNL 183
L L + N F G IP + N+S+L L N G +P + NLRKL L L L
Sbjct: 724 DLEGLFIGGNEFNGTIPVYISNMSKLIRLHISDNYFTGNVPKDLNNLRKLEVLNLAGNQL 783
Query: 184 --------QGQIPTEIGSLQ-NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGR 234
+G +P +G+L L++ + G IP I N++ + L L +N L+G
Sbjct: 784 TSEIIILLKGTLPNSLGNLSVALESFTASACHFXGTIPTGIGNLTNLIWLDLGANDLTGS 843
Query: 235 LPSTIGHSLR----NIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290
+P+T+ + N+ YL LS+N L G IP+ + L L L N + +IP +F +
Sbjct: 844 IPATLWTATEAPAINLGYLHLSSNKLSGSIPSCFGDLPMLRQLSLDSNVLAFNIPTSFWS 903
Query: 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSAS 350
LR L VL++ N LT + + N ++++ L L+ N + G +P+ IG
Sbjct: 904 LRDLLVLSLSSNFLTG--------NLPLEVGNMKSITTLDLSKNLISGYIPRRIG----E 951
Query: 351 LQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGN 410
LQN+ L N L G+IP G L L+ + NNL G +P L L LN+S N
Sbjct: 952 LQNLVNLSLSQNKLQGSIPVEFGDLLSLESMDLSRNNLSGTIPKSLEAFIYLKYLNVSFN 1011
Query: 411 KLSGHIPPCLASLTSLRELHLGSNKLSSS------------------------------I 440
KL I + EL + + L + +
Sbjct: 1012 KLQEEISNGGPFXNFIAELFIFNKALCGARHFQVIACDKNNCTQSWKTKSFILKYILLPV 1071
Query: 441 PSSL-------AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL 493
S++ A RSFDSECEV++ + HRNLI+II+ CSN DFKALVLE+MP GSL+KWL
Sbjct: 1072 GSTVFNLEFQGALRSFDSECEVMQGICHRNLIRIITCCSNLDFKALVLEYMPKGSLDKWL 1131
Query: 494 YSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGE------------------- 534
YSHNYFLD+ +RL IMIDV SALEYL H S ++HC+ +
Sbjct: 1132 YSHNYFLDLFQRLTIMIDVASALEYLHHDCLSL-VVHCDLKPSNVLLDNNMVAHVADFGI 1190
Query: 535 -------DSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFT 587
+S+ QT T+ TIGYMA EYGS+GIVS K DVYSYG+LLME F RK+P DEMFT
Sbjct: 1191 ARLLTETESMQQTKTLGTIGYMASEYGSDGIVSTKGDVYSYGILLMEVFARKKPMDEMFT 1250
Query: 588 GEMSLRRWVKESLPHRLSEVVDTNLV-REEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646
G+++L+ WV ESL + EVVD NL+ RE++ + K+ L S+M LAL C +SPD+R++
Sbjct: 1251 GDVTLKTWV-ESLSSSVIEVVDANLLRREDEDLATKLSYLSSLMALALACIADSPDERIN 1309
Query: 647 MTDAAAKLKKIKVKFL 662
M D +LKKIK+K L
Sbjct: 1310 MKDVVVELKKIKIKLL 1325
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143445|emb|CBI22006.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/678 (37%), Positives = 342/678 (50%), Gaps = 163/678 (24%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115
L+ + L G IP N+S L L+++ N G +P L R LRV+SL+ N+ +G
Sbjct: 1263 LSFRNNNLIGEIPQSLFNISSLRFLNLAANQLEGEIPSNLSHCRELRVLSLSLNQFTGGI 1322
Query: 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG-------------- 161
P IG LS L L L YNN G IP+ + NL L +L + N + G
Sbjct: 1323 PQAIGSLSNLEELYLGYNNLGGGIPSEIGNLHNLNILNFDNNSLSGRSIIREIGNLSKLE 1382
Query: 162 -----------TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210
TIP GNL + LGL N QG IP E+G L NL+ L L N L+G+
Sbjct: 1383 QIYLGRNNFTSTIPPSFGNLTAIQELGLEENNFQGNIPKELGKLINLQILHLGQNNLTGI 1442
Query: 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKL 270
+P I NIS +++L+L N LSG LPS+IG L N+E L + N GKIP SI+N +KL
Sbjct: 1443 VPEAIINISKLQVLSLSLNHLSGSLPSSIGTWLPNLEGLYIGANEFSGKIPMSISNMSKL 1502
Query: 271 IGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLA 330
+ +D+ N F G++P + + +F +SLTNC +L L
Sbjct: 1503 LFMDISNNYFIGNLPKDLDS----------------------ELAFFTSLTNCISLRKLR 1540
Query: 331 LASNPLGGILPQLIGNFSASLQNI----------------YAFELGFNDLNGTIPTSIGT 374
+ NPL GI+P +GN S S++ I A L N L IP+S+
Sbjct: 1541 IGGNPLKGIIPNSLGNLSISIERIGARSCQLRGTIPTGKLQAINLHSNGLASEIPSSLWI 1600
Query: 375 LQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS--------------------- 413
L+ L + N L G +P ++ +++ L L+LS N+ S
Sbjct: 1601 LRYLLFLNLSSNFLNGELPLEVGNMKSLEELDLSKNQFSGNIPSTISLLQNLLQLYLSHN 1660
Query: 414 ---GHIPPCL--ASLTSLRELHLGSNKLSSSIPSSLAFRSFDSE---------------- 452
GHIPP +L L+ L++ NKL IP+ F +F +E
Sbjct: 1661 KLQGHIPPNFDDLALKYLKYLNVSFNKLQGEIPNGGPFANFTAESFISNLALCGAPRLGT 1720
Query: 453 -------------------------------CEVLRNVRHRNLIKIISSCSNPDFKALVL 481
CEV++N+RHRNL KIISSCSN DFKALVL
Sbjct: 1721 VYKGVLSDGLIVAVKVFNLELQGAFKSFEVECEVMQNIRHRNLAKIISSCSNLDFKALVL 1780
Query: 482 EFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------- 532
E+MPNGSLEKWLYSHNY+LD ++RL IMIDV S LEYL H +SS P++HC+
Sbjct: 1781 EYMPNGSLEKWLYSHNYYLDFVQRLKIMIDVASGLEYLHHDYSS-PVVHCDLKPNNVLLD 1839
Query: 533 -----------------GEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575
G + + +T T+ TIGYMAPEYGSEGIVS KCD+YS+G++LMET
Sbjct: 1840 DDMVAHISDFGIAKLLMGSEFMKRTKTLGTIGYMAPEYGSEGIVSTKCDIYSFGIMLMET 1899
Query: 576 FTRKRPTDEMFTGEMSLR 593
F RK+PTDEMF E++L+
Sbjct: 1900 FVRKKPTDEMFMEELTLK 1917
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740824|emb|CBI31006.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 271/699 (38%), Positives = 376/699 (53%), Gaps = 119/699 (17%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
Q + L+ L G+IP N+S L+++ +S NN G Q +L+V+SLAYN
Sbjct: 58 QNLKVLSFPMNNLTGSIPATIFNISSLLNISLSNNNLSG------SQCIQLQVISLAYND 111
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
+GS PS IG L +L+ L L N+FTG IP LFN+S L L N + G IPS + +
Sbjct: 112 FTGSIPSGIGNLVELQRLSLQNNSFTGEIPQLLFNISSLRFLNLAVNNLEGEIPSNLSHC 171
Query: 171 RKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLES-- 228
R+L L L G IP IGSL NL+ L L+ NKL+G IP I N+S + IL L S
Sbjct: 172 RELRVLSLSFNQFTGGIPQAIGSLSNLEELYLSHNKLTGGIPREIGNLSNLNILQLSSNG 231
Query: 229 -----------NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI--------TNATK 269
N LSG +P IG+ L +E + L TN+LIG IP S T +
Sbjct: 232 ISGPIPAEIFNNHLSGSIPKEIGN-LSKLEKIYLGTNSLIGSIPTSFGSLPSSIGTWLSD 290
Query: 270 LIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNL 329
L GL + N FSG IP + N+ L+VL + N+ T FL+SLTNC+ L NL
Sbjct: 291 LEGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFT------GNVGFLTSLTNCKFLKNL 344
Query: 330 ALASNPLGGILPQLIGNFSASLQNIYA---------------------FELGFNDLNGTI 368
+ +NP G LP +GN +L++ A +LG NDL G+I
Sbjct: 345 WIGNNPFKGTLPNSLGNLPIALESFIASACQFRGTIPTRIGNLTNLIWLDLGANDLTGSI 404
Query: 369 PTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRE 428
PT++G L++LQ ++ N L+G +P+DLCHL+ L L+LS NKLSG I P ++ S+
Sbjct: 405 PTTLGRLKKLQKLHIVGNRLRGSIPNDLCHLKNLGYLHLSSNKLSGSI-PSFGNMKSITT 463
Query: 429 LHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGS 488
L L N +S F C+ +N R ++ + N + + ++P G+
Sbjct: 464 LDLSKNLVS----------EFVMACD--KNNRTQSW---KTKRDNMEIPTPIDSWLP-GT 507
Query: 489 LEK-----WLYSHNYF------------LDILERLNIMIDVGSALEYLRHGHSSAPIIHC 531
EK LY+ N F + LNIMIDV SALEYL H SS ++HC
Sbjct: 508 HEKISHQQLLYATNDFGEDNLIGKGSQGMFRFRILNIMIDVASALEYLHHDCSSL-VVHC 566
Query: 532 E--------------------------GEDSVTQTTTMATIGYMAP-EYGSEGIVSAKCD 564
+ +S+ QT T+ TIGYMAP E+GS+GIVS K D
Sbjct: 567 DLKPNNVLLDDDMVAHVADFGITKLLTKTESMQQTKTLGTIGYMAPAEHGSDGIVSTKSD 626
Query: 565 VYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLV-REEQAFSAKM 623
VYSYG+LLME F+RK+P DEMFTG+++L+ WV ESL + + +VVD NL+ RE++ + K+
Sbjct: 627 VYSYGILLMEVFSRKKPMDEMFTGDLTLKTWV-ESLSNSVIQVVDANLLRREDEDLATKL 685
Query: 624 DCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVKFL 662
CL SIM LAL C +SP++R++M DA +LKK ++K L
Sbjct: 686 SCLSSIMALALACTTDSPEERLNMKDAVVELKKSRMKLL 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143439|emb|CBI22000.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 287/813 (35%), Positives = 380/813 (46%), Gaps = 230/813 (28%)
Query: 9 TDQSSLLAFKAH-AFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTI 67
+D+ +LLA KAH +D + LA NWS + C+W G+SC + H R+TALNLS+MGL GTI
Sbjct: 88 SDEYALLALKAHITYDSQGILATNWSSTTSYCNWFGVSCNAHHGRLTALNLSNMGLEGTI 147
Query: 68 PLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLR------------------------- 102
P NLSFL SLD+S+N FH LP E+G R+LR
Sbjct: 148 PPQVSNLSFLASLDLSDNYFHASLPNEIGNCRQLRQLYFFNNELTGSIPQSLGNLSKLEE 207
Query: 103 -----------------------VMSLAYNKLSGSFPSWIG--VLSKLRILRLDYNN--- 134
++SL N L+GS PS I LSKL L L NN
Sbjct: 208 SYLDSNHLTGDIPEEMSNLLSLKILSLFVNNLTGSIPSGIFNISLSKLEELYLGVNNLAG 267
Query: 135 ----------------------------FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR 166
FTG IP + NL LE + N + GTIP
Sbjct: 268 GIPRGMGNLLNLKMLSLLQVLSSLSKNKFTGSIPIEIGNLPMLEEIYLGRNSLTGTIPPS 327
Query: 167 IGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTL 226
GNL L L L N+QG IP E+G L +L+NL L N L G++P IFNIS ++ ++L
Sbjct: 328 FGNLSALKVLDLQENNIQGNIPKELGCLLSLQNLSLISNDLRGIVPEAIFNISKLQSISL 387
Query: 227 ESNQLSGRLPSTIG-HSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP 285
N LSG LPS+I +LR++++L N L G IP ++ KL L + N G IP
Sbjct: 388 ADNHLSGNLPSSIDLGNLRSLQHLGFGNNELTGMIPTTLGQLQKLQQLIISGNRIHGSIP 447
Query: 286 N----------------------------TFGNLRHLSVLNVMMNNLTTESSSADQWSFL 317
N + G L++L L++ NNL Q
Sbjct: 448 NDLCHSENLGSLLLSSNELSGPVPSYIPSSVGQLQNLVELSLSKNNL--------QGPIP 499
Query: 318 SSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI----PTSIG 373
+ +L +L L+ N L G +PQ + +L + + FN G I P
Sbjct: 500 LKFGDVVSLESLDLSWNNLSGTIPQSL----EALIYLKHLNVSFNKRQGEIRNGGPFVNF 555
Query: 374 TLQQL---QGFYVPENNLQGYVP---HDLCHLERLNILNL-----------SGNKLSGHI 416
T + + Y+P + +P + H E L+ N G G +
Sbjct: 556 TAKSFISNEALYIPIQ-VDSSLPTTYRKISHQELLHATNYFSEGNLIGKGSMGTVYKGVL 614
Query: 417 PPCLASLTSLRELH-LGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPD 475
L + + L LGS F+ F++ECEV+RN+RHRNLIKIISSCSN
Sbjct: 615 FDGLTAAIKVFNLEFLGS------------FKGFEAECEVMRNIRHRNLIKIISSCSNLG 662
Query: 476 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--- 532
FKALVLEFMPN SLE+WLYSHNY LD+++RLNIMIDV SALEYL H +S+ P++HC+
Sbjct: 663 FKALVLEFMPNRSLERWLYSHNYCLDLIQRLNIMIDVASALEYLHHDYSN-PVVHCDLKP 721
Query: 533 -----------------------GEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569
G +S QT T+ IGYMAPEYGSEGIVS DVYS G
Sbjct: 722 NNVLLDEDRVAHVGDFGIAKLLPGSESRQQTKTLGPIGYMAPEYGSEGIVST-SDVYSNG 780
Query: 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSI 629
++L+E F RK+PTDEMF G+ +L+ W
Sbjct: 781 IMLLEVFARKKPTDEMFVGDPTLKSW---------------------------------- 806
Query: 630 MDLALDCCMESPDKRMHMTDAAAKLKKIKVKFL 662
SP+ R++M D A+LKKI++K L
Sbjct: 807 ----------SPEDRINMRDVVARLKKIRIKLL 829
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585401|ref|XP_002533396.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526770|gb|EEF28996.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 259/667 (38%), Positives = 361/667 (54%), Gaps = 70/667 (10%)
Query: 48 SRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLA 107
+R + + L L L T+P GNLS + ++ N G++P E+G L L + L
Sbjct: 195 ARCKELRRLVLIGNPLNSTLPTSIGNLSSIEYFNVQSCNIKGNIPSEIGVLSNLITLHLQ 254
Query: 108 YNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI 167
N+L GS P IG L KL+ L L N G IP + +LS L L N + G +P+
Sbjct: 255 NNELVGSIPVTIGGLQKLQRLYLHGNLLYGSIPTDICHLSNLGELFLSNNSLFGPLPACF 314
Query: 168 GNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227
G+L L L L S N IP + SL+++ L+L+ N LSG IP +I N+ + +
Sbjct: 315 GDLISLRILHLHSNNFTSGIPFSLWSLKDVLELNLSSNSLSGHIPLSIGNLKVLTQVDFS 374
Query: 228 SNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNT 287
N LSG +P+ IG SLRN+ L+L+ N G IP L LDL N+ SG IP +
Sbjct: 375 YNSLSGIIPNAIG-SLRNLMSLSLTHNRFEGPIPEPFGELISLESLDLSSNNLSGKIPKS 433
Query: 288 FGNLRHLSVLNVMMNNLTTESSSADQW------SFLSSLTNC--RNLSNLALASNPLGG- 338
L++L LNV NNL E + + SFL +L C R L + +N GG
Sbjct: 434 LEQLKYLKYLNVSFNNLDGEVPNKGAFANFSASSFLGNLALCGSRLLPLMPCKNNTHGGS 493
Query: 339 ----------ILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNL 388
+LP I + L + ++ N ++GT +++ F E
Sbjct: 494 KTSTKLLLIYVLPASILTIAFILVFLRCQKVKLELENVMDIITVGTWRRIS-FQELEQAT 552
Query: 389 QGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRS 448
G+ +L G+ G + + +++ +LG AF+
Sbjct: 553 DGFCASNLLGAGGY------GSVYKGRLED--GTNVAIKVFNLGVEG---------AFKI 595
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
FD+ECEV+ ++RHRNL+KIIS CSN DFKA+VLE+MPNGSLEKWLYSHNY L+I +RL +
Sbjct: 596 FDTECEVMSSIRHRNLVKIISCCSNQDFKAIVLEYMPNGSLEKWLYSHNYCLNIQQRLEV 655
Query: 509 MIDVGSALEYLRHGHSSAPIIHCE-------------------------GE-DSVTQTTT 542
MIDV SALEYL HG SAPI+HC+ GE D +TQT T
Sbjct: 656 MIDVASALEYLHHGF-SAPIVHCDLKPSNVLLDQDMVGHVADFGMAKLLGEGDLITQTKT 714
Query: 543 MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE--MSLRRWVKESL 600
+ATIGYMAPEYGS+GIVS DVYS+G+LLMETFTR +PTD+MF GE +SL+++++++L
Sbjct: 715 LATIGYMAPEYGSKGIVSISGDVYSFGILLMETFTRMKPTDDMF-GERVLSLKQYIEDAL 773
Query: 601 PHR-LSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659
H +SE+ D N + +E+ S K DC+ SI+ LALDC +E P R+ M+ A L+ IK
Sbjct: 774 LHNAVSEIADANFLIDEKNLSTK-DCVSSILGLALDCSVELPHGRIDMSQVLAALRSIKA 832
Query: 660 KFLDDVA 666
+ L A
Sbjct: 833 QLLASSA 839
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086336|emb|CBI31777.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 258/693 (37%), Positives = 358/693 (51%), Gaps = 138/693 (19%)
Query: 9 TDQSSLLAFKAH-AFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTI 67
D+ SLLA KAH D + LA NWS + C+W G+SC + QRV AL+LS+M L GTI
Sbjct: 33 ADELSLLAMKAHITSDSKDVLATNWSTTTSYCNWFGVSCDAARQRVIALDLSNMDLEGTI 92
Query: 68 PLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKL-- 125
GNLSFLV+LD+S N+FH +P E+ + R LR + L N+L+GS P IG LSKL
Sbjct: 93 APQVGNLSFLVTLDLSNNSFHASIPNEIAKCRELRQLYLFNNRLTGSIPQAIGNLSKLEQ 152
Query: 126 ----------------------RILRLDYNNFTGPIPNSLFNLS---------RLEMLRA 154
+IL NN T IP+++FN+S RLE +
Sbjct: 153 LYLGGNQLTGEIPREISHLLSLKILSFRSNNLTASIPSAIFNISSLQYIGKCGRLEEISL 212
Query: 155 EFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPT---EIGSLQNLKNLDLADNKLSGLI 211
FN G+IP IG+L L L L S NL+G+IP + SL L+ ++L+ N+L G I
Sbjct: 213 SFNEFMGSIPRGIGSLSVLEVLYLGSNNLEGEIPQTLFNLSSLPRLQVINLSQNQLKGEI 272
Query: 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI-PNSITNATKL 270
PP++ N ++ L LE N++ G +P +GH L ++YL+L++N L G I P SI+N TKL
Sbjct: 273 PPSLSNCGELQTLYLEKNKIQGNIPKELGH-LSELQYLSLASNILTGGIIPASISNITKL 331
Query: 271 IGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLA 330
LDL +N +G + FL+S N
Sbjct: 332 TRLDLSYNLLTGFL------------------------------GFLTSFINA------- 354
Query: 331 LASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQG 390
++ G++P IGN L N+ LG NDL G IPT++G L++LQ Y+ N + G
Sbjct: 355 -SACQFKGVIPAGIGN----LTNLIELGLGDNDLTGMIPTTLGQLKKLQRLYIAGNRIHG 409
Query: 391 YVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFD 450
VP+ + HL L L L +L SL+ L++ NKL IP F +F
Sbjct: 410 SVPNGIGHLANLVYL-------------FLKALVSLKYLNVSFNKLEGEIPDKGPFANFT 456
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMI 510
+E + S + + L + S ++ +Y+ NYF + + MI
Sbjct: 457 TE-------------RRSKSKAPAQVNSFHLGKLRRISHQELIYATNYFGE-----DNMI 498
Query: 511 DVGSALEYLRHGHSSAPIIHCEGED-SVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569
GS L + G + +G + + QT T+ TIGYMAPEYGSEGIVS + DVYSYG
Sbjct: 499 GTGS-LGMVHRG------VLSDGLNIMIDQTRTLGTIGYMAPEYGSEGIVSTRGDVYSYG 551
Query: 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSI 629
+++METF RK+PTDEMF GE++LR WV ESL R+ E CL SI
Sbjct: 552 IMMMETFARKKPTDEMFGGEVTLRSWV-ESLAGRVME-----------------SCLRSI 593
Query: 630 MDLALDCCMESPDKRMHMTDAAAKLKKIKVKFL 662
M LAL+C ESP R+ M + +LKKI++K L
Sbjct: 594 MALALECTTESPRDRIDMKEVVVRLKKIRIKLL 626
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 669 | ||||||
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.620 | 0.410 | 0.370 | 3.4e-111 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.623 | 0.413 | 0.355 | 4.5e-105 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.623 | 0.412 | 0.348 | 2e-104 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.624 | 0.407 | 0.365 | 1.6e-102 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.623 | 0.406 | 0.343 | 4.1e-100 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.621 | 0.403 | 0.353 | 1e-99 | |
| TAIR|locus:2131518 | 1091 | AT4G26540 [Arabidopsis thalian | 0.544 | 0.333 | 0.351 | 1.7e-74 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.559 | 0.327 | 0.338 | 2.4e-74 | |
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.606 | 0.362 | 0.330 | 2.5e-70 | |
| TAIR|locus:2156349 | 1252 | GSO2 "GASSHO 2" [Arabidopsis t | 0.584 | 0.312 | 0.329 | 2.5e-70 |
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 3.4e-111, Sum P(3) = 3.4e-111
Identities = 156/421 (37%), Positives = 235/421 (55%)
Query: 9 TDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIP 68
TD+ +LL FK+ + + + ++W+ S+P+C+W G++CG +++RVT L L + LGG I
Sbjct: 24 TDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVIS 83
Query: 69 LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128
GNLSFLVSLD+ EN F G +P+E+GQL RL + + N L G P + S+L L
Sbjct: 84 PSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNL 143
Query: 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP 188
RLD N G +P+ L +L+ L L N + G +P+ +GNL L L L NL+G+IP
Sbjct: 144 RLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIP 203
Query: 189 TEIGSXXXXXXXXXXXXXXSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEY 248
+++ SG+ PP ++N+S++++L + N SGRL +G L N+
Sbjct: 204 SDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLS 263
Query: 249 LALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTES 308
+ N G IP +++N + L L + N+ +G IP TFGN+ +L +L + N+L ++S
Sbjct: 264 FNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDS 322
Query: 309 SSADQWSFLSSLTNCRXXXXXXXXXXPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI 368
S FL+SLTNC LGG LP I N SA L + +LG ++G+I
Sbjct: 323 SR--DLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTL---DLGGTLISGSI 377
Query: 369 PTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRE 428
P IG L LQ + +N L G +P L L L L+L N+LSG IP + ++T L
Sbjct: 378 PYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLET 437
Query: 429 L 429
L
Sbjct: 438 L 438
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 4.5e-105, Sum P(3) = 4.5e-105
Identities = 150/422 (35%), Positives = 217/422 (51%)
Query: 9 TDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIP 68
+D+ +LL K+ + + + W+ S+P+CSW + CG +H+RVT L+L + LGG I
Sbjct: 24 SDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVIS 83
Query: 69 LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128
GNLSFL+ LD+S N+F G +P+E+G L RL+ +++ +N L G P+ + S+L L
Sbjct: 84 PSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYL 143
Query: 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP 188
L NN +P+ L +L +L L N + G P I NL L+ L L +L+G+IP
Sbjct: 144 DLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEIP 203
Query: 189 TEIGSXXXXXXXXXXXXXXSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEY 248
+I SG+ PP +N+S++ L L N SG L G+ L NI
Sbjct: 204 DDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNIHE 263
Query: 249 LALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTES 308
L+L N L G IP ++ N + L +G N +G I FG L +L L + N+L S
Sbjct: 264 LSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLG--S 321
Query: 309 SSADQWSFLSSLTNCRXXXXXXXXXXPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI 368
S +FL +LTNC LGG LP I N S L L N + G+I
Sbjct: 322 YSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELT---VLNLKGNLIYGSI 378
Query: 369 PTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRE 428
P IG L LQ + +N L G +P L +L L L L N+ SG IP + +LT L +
Sbjct: 379 PHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVK 438
Query: 429 LH 430
L+
Sbjct: 439 LY 440
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 2.0e-104, Sum P(3) = 2.0e-104
Identities = 147/422 (34%), Positives = 226/422 (53%)
Query: 9 TDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIP 68
TD+ +LL FK+ + + + ++W+ S+P+C+W ++CG +H+RVT LNL + LGG +
Sbjct: 24 TDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVS 83
Query: 69 LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128
GN+SFL+SLD+S+N F G +P+E+G L RL + +A+N L G P+ + S+L L
Sbjct: 84 PSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNL 143
Query: 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP 188
L N +P+ L +L++L +L N + G +P +GNL L +LG N++G++P
Sbjct: 144 DLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEVP 203
Query: 189 TEIGSXXXXXXXXXXXXXXSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEY 248
E+ G+ PP I+N+S + L L + SG L G+ L NI
Sbjct: 204 DELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRE 263
Query: 249 LALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTES 308
L L N+L+G IP +++N + L + N +G I FG + L L++ N L S
Sbjct: 264 LNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLG--S 321
Query: 309 SSADQWSFLSSLTNCRXXXXXXXXXXPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI 368
+ F+ SLTNC LGG LP I N S L ++ +G N G+I
Sbjct: 322 YTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNL--IG-NHFFGSI 378
Query: 369 PTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRE 428
P IG L LQ + +N L G +P L L RL +L+L N++SG IP + +LT L
Sbjct: 379 PQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEI 438
Query: 429 LH 430
L+
Sbjct: 439 LY 440
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 1.6e-102, Sum P(3) = 1.6e-102
Identities = 158/432 (36%), Positives = 221/432 (51%)
Query: 6 DLTTDQSSLLAFKAHA-FDYRSALANNWSISY--PICSWAGISCGSRHQR----VTALNL 58
D D+ +LL+FK+ + +LA+ W+ S C+W G+ CG R +R V L L
Sbjct: 28 DAAGDELALLSFKSSLLYQGGQSLAS-WNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLL 86
Query: 59 SDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSW 118
L G I GNLSFL LD+ +N G +P EL +L RL+++ L+ N + GS P+
Sbjct: 87 RSSNLSGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAA 146
Query: 119 IGVLSKLRILRLDYNNFTGPIPNSL-FNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLG 177
IG +KL L L +N G IP + +L L L N + G IPS +GNL L
Sbjct: 147 IGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFD 206
Query: 178 LWSCNLQGQIPTEIGSXXXXXXXXXXXXXXSGLIPPTIFNISTMRILTLESNQLSGRLPS 237
L L G IP+ +G SG+IP +I+N+S++R ++ N+L G +P+
Sbjct: 207 LSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPT 266
Query: 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVL 297
+L +E + + TN GKIP S+ NA+ L + + N FSG I + FG LR+L+ L
Sbjct: 267 NAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTEL 326
Query: 298 NVMMNNLTTESSSADQWSFLSSLTNCRXXXXXXXXXXPLGGILPQLIGNFSASLQNIYAF 357
+ N T D W F+S LTNC LGG+LP N S SL + A
Sbjct: 327 YLWRNLFQTREQ--DDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSL-SFLAL 383
Query: 358 ELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIP 417
EL N + G+IP IG L LQ Y+ NN +G +P L L+ L IL N LSG IP
Sbjct: 384 EL--NKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIP 441
Query: 418 PCLASLTSLREL 429
+ +LT L L
Sbjct: 442 LAIGNLTELNIL 453
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 4.1e-100, Sum P(3) = 4.1e-100
Identities = 145/422 (34%), Positives = 220/422 (52%)
Query: 9 TDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIP 68
TD+ +LL FK+ + + +W+ S P+CSW G+ CG +H+RVT ++L + L G +
Sbjct: 39 TDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVS 98
Query: 69 LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128
GNLSFL SL++++N FHG +P E+G L RL+ ++++ N G P + S L L
Sbjct: 99 PFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTL 158
Query: 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP 188
L N+ +P +LS+L +L N + G P+ +GNL L L ++G+IP
Sbjct: 159 DLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIP 218
Query: 189 TEIGSXXXXXXXXXXXXXXSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEY 248
+I +G+ PP I+N+S++ L++ N SG L G L N++
Sbjct: 219 GDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQI 278
Query: 249 LALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTES 308
L + N+ G IP +++N + L LD+ N +G IP +FG L++L +L + N+L S
Sbjct: 279 LYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYS 338
Query: 309 SSADQWSFLSSLTNCRXXXXXXXXXXPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI 368
S FL +LTNC LGG LP I N S L + LG N ++G+I
Sbjct: 339 SG--DLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTEL---SLGGNLISGSI 393
Query: 369 PTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRE 428
P IG L LQ + EN L G +P L L L + L N LSG IP L +++ L
Sbjct: 394 PHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTY 453
Query: 429 LH 430
L+
Sbjct: 454 LY 455
|
|
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
Identities = 150/424 (35%), Positives = 227/424 (53%)
Query: 9 TDQSSLLAFKAHAFDY--RSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGT 66
TD +LL FK+ + R LA+ W+ S P C+W G++CG R +RV +LNL L G
Sbjct: 30 TDMQALLEFKSQVSENNKREVLAS-WNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGV 88
Query: 67 IPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLR 126
I GNLSFL L++++N+F +P+++G+L RL+ ++++YN L G PS + S+L
Sbjct: 89 ISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLS 148
Query: 127 ILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ 186
+ L N+ +P+ L +LS+L +L N + G P+ +GNL L L ++G+
Sbjct: 149 TVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208
Query: 187 IPTEIGSXXXXXXXXXXXXXXSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNI 246
IP E+ SG PP ++NIS++ L+L N SG L + G+ L N+
Sbjct: 209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNL 268
Query: 247 EYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306
L L TN G IP ++ N + L D+ N SG IP +FG LR+L L + N+L
Sbjct: 269 RRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGN 328
Query: 307 ESSSADQWSFLSSLTNCRXXXXXXXXXXPLGGILPQLIGNFSASLQNIYAFELGFNDLNG 366
SSS + F+ ++ NC LGG LP I N S +L +++ LG N ++G
Sbjct: 329 NSSSGLE--FIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLF---LGQNLISG 383
Query: 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSL 426
TIP IG L LQ + N L G +P L L +++L N +SG IP ++T L
Sbjct: 384 TIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRL 443
Query: 427 RELH 430
++LH
Sbjct: 444 QKLH 447
|
|
| TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 1.7e-74, Sum P(3) = 1.7e-74
Identities = 133/378 (35%), Positives = 196/378 (51%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
+T+L LS + L G IP G+ + L LD+S+N+ G +P E+ +L++L+ +SL N L
Sbjct: 95 LTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLE 154
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI-IGGTIPSRIGNLR 171
G P IG LS L L L N +G IP S+ L L++LRA N + G +P IGN
Sbjct: 155 GHIPMEIGNLSGLVELMLFDNKLSGEIPRSIGELKNLQVLRAGGNKNLRGELPWEIGNCE 214
Query: 172 KLVNLGLWSCNLQGQIPTEIGSXXXXXXXXXXXXXXSGLIPPTIFNISTMRILTLESNQL 231
LV LGL +L G++P IG+ SG IP I + ++ L L N +
Sbjct: 215 NLVMLGLAETSLSGKLPASIGNLKRVQTIAIYTSLLSGPIPDEIGYCTELQNLYLYQNSI 274
Query: 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291
SG +P+TIG L+ ++ L L NNL+GKIP + N +L +D N +G IP +FG L
Sbjct: 275 SGSIPTTIG-GLKKLQSLLLWQNNLVGKIPTELGNCPELWLIDFSENLLTGTIPRSFGKL 333
Query: 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRXXXXXXXXXXPLGGILPQLIGNFSASL 351
+L L + +N + S + + LTNC + G +P L+ N SL
Sbjct: 334 ENLQELQLSVNQI---SGTIPE-----ELTNCTKLTHLEIDNNLITGEIPSLMSNLR-SL 384
Query: 352 QNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNK 411
+A++ N L G IP S+ ++LQ + N+L G +P ++ L L L L N
Sbjct: 385 TMFFAWQ---NKLTGNIPQSLSQCRELQAIDLSYNSLSGSIPKEIFGLRNLTKLLLLSND 441
Query: 412 LSGHIPPCLASLTSLREL 429
LSG IPP + + T+L L
Sbjct: 442 LSGFIPPDIGNCTNLYRL 459
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 2.4e-74, Sum P(3) = 2.4e-74
Identities = 132/390 (33%), Positives = 193/390 (49%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
+++ L++ + G IP GN S LV L + EN+ G +P+E+GQL +L + L N
Sbjct: 250 KKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNS 309
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
L G P IG S L+++ L N +G IP+S+ LS LE N G+IP+ I N
Sbjct: 310 LVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNC 369
Query: 171 RKLVNLGLWSCNLQGQIPTEIGSXXXXXXXXXXXXXXSGLIPPTIFNISTMRILTLESNQ 230
LV L L + G IP+E+G+ G IPP + + + ++ L L N
Sbjct: 370 SSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNS 429
Query: 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290
L+G +PS + LRN+ L L +N+L G IP I N + L+ L LGFN +G IP+ G+
Sbjct: 430 LTGTIPSGL-FMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGS 488
Query: 291 LRHLSVLNVMMNNL----TTESSSADQWSFLSSLTNCRXXXXXXXXXXPLGGI------L 340
L+ ++ L+ N L E S + + L+N L G+
Sbjct: 489 LKKINFLDFSSNRLHGKVPDEIGSCSELQMID-LSNNSLEGSLPNPVSSLSGLQVLDVSA 547
Query: 341 PQLIGNFSASLQNIYAFE---LGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC 397
Q G ASL + + L N +G+IPTS+G LQ + N L G +P +L
Sbjct: 548 NQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELG 607
Query: 398 HLERLNI-LNLSGNKLSGHIPPCLASLTSL 426
+E L I LNLS N+L+G IP +ASL L
Sbjct: 608 DIENLEIALNLSSNRLTGKIPSKIASLNKL 637
|
|
| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 2.5e-70, Sum P(3) = 2.5e-70
Identities = 141/427 (33%), Positives = 216/427 (50%)
Query: 10 DQSSLLAFKAHAFDYRSALAN-----NWSISYPICSWAGISCGSRHQRVTALNLSDMGLG 64
+ ++LL +K+ F S L++ N + S+ SW G+SC SR + LNL++ G+
Sbjct: 33 EANALLKWKS-TFTNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGS-IEELNLTNTGIE 90
Query: 65 GTIP-LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLS 123
GT F +LS L +D+S N G +P + G L +L L+ N L+G +G L
Sbjct: 91 GTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLK 150
Query: 124 KLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNL 183
L +L L N T IP+ L N+ + L N + G+IPS +GNL+ L+ L L+ L
Sbjct: 151 NLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYL 210
Query: 184 QGQIPTEIGSXXXXXXXXXXXXXXSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSL 243
G IP E+G+ +G IP T+ N+ + +L L N L+G +P IG+ +
Sbjct: 211 TGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGN-M 269
Query: 244 RNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNN 303
++ LALS N L G IP+S+ N L L L N +G IP GN+ + L + N
Sbjct: 270 ESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNK 329
Query: 304 LTTESSSADQWSFLSSLTNCRXXXXXXXXXXPLGGILPQLIGNFSASLQNIYAFELGFND 363
LT S SSL N + L G++P +GN ++++ +L N
Sbjct: 330 LTG--------SIPSSLGNLKNLTILYLYENYLTGVIPPELGN----MESMIDLQLNNNK 377
Query: 364 LNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASL 423
L G+IP+S G L+ L Y+ N L G +P +L ++E + L+LS NKL+G +P +
Sbjct: 378 LTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNF 437
Query: 424 TSLRELH 430
T L L+
Sbjct: 438 TKLESLY 444
|
|
| TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 2.5e-70, Sum P(3) = 2.5e-70
Identities = 138/419 (32%), Positives = 200/419 (47%)
Query: 31 NWSISYP-ICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHG 89
+W+ P C+W G++CG R + LNLS +GL G+I G + L+ +D+S N G
Sbjct: 52 DWNSGSPSYCNWTGVTCGGRE--IIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVG 109
Query: 90 HLPKELGQLRR-LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSR 148
+P L L L + L N LSG PS +G L L+ L+L N G IP + NL
Sbjct: 110 PIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVN 169
Query: 149 LEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSXXXXXXXXXXXXXXS 208
L+ML + G IPSR G L +L L L L+G IP EIG+ +
Sbjct: 170 LQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLN 229
Query: 209 GLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNAT 268
G +P + + ++ L L N SG +PS +G L +I+YL L N L G IP +T
Sbjct: 230 GSLPAELNRLKNLQTLNLGDNSFSGEIPSQLG-DLVSIQYLNLIGNQLQGLIPKRLTELA 288
Query: 269 KLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT--------TESSSADQWSFLSS- 319
L LDL N+ +G I F + L L + N L+ + ++S Q FLS
Sbjct: 289 NLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQL-FLSET 347
Query: 320 ---------LTNCRXXXXXXXXXXPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370
++NC+ L G +P + L N+Y L N L GT+ +
Sbjct: 348 QLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQL-VELTNLY---LNNNSLEGTLSS 403
Query: 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLREL 429
SI L LQ F + NNL+G VP ++ L +L I+ L N+ SG +P + + T L+E+
Sbjct: 404 SISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEI 462
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 669 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-64 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-61 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-52 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-26 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-26 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 3e-23 | |
| smart00219 | 257 | smart00219, TyrKc, Tyrosine kinase, catalytic doma | 2e-21 | |
| smart00221 | 258 | smart00221, STYKc, Protein kinase; unclassified sp | 4e-20 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 1e-18 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 5e-18 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 1e-17 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 1e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-15 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-14 | |
| cd05049 | 280 | cd05049, PTKc_Trk, Catalytic domain of the Protein | 1e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-12 | |
| cd05059 | 256 | cd05059, PTKc_Tec_like, Catalytic domain of Tec-li | 1e-11 | |
| cd05081 | 284 | cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) | 2e-11 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-11 | |
| cd05148 | 261 | cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro | 3e-10 | |
| cd05041 | 251 | cd05041, PTKc_Fes_like, Catalytic domain of Fes-li | 4e-10 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 5e-10 | |
| cd05039 | 256 | cd05039, PTKc_Csk_like, Catalytic domain of C-term | 1e-09 | |
| cd05123 | 250 | cd05123, STKc_AGC, Catalytic domain of AGC family | 3e-09 | |
| cd05083 | 254 | cd05083, PTKc_Chk, Catalytic domain of the Protein | 3e-09 | |
| cd05094 | 291 | cd05094, PTKc_TrkC, Catalytic domain of the Protei | 5e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-09 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-08 | |
| cd06627 | 254 | cd06627, STKc_Cdc7_like, Catalytic domain of Cell | 1e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-08 | |
| cd05048 | 283 | cd05048, PTKc_Ror, Catalytic Domain of the Protein | 2e-08 | |
| cd05112 | 256 | cd05112, PTKc_Itk, Catalytic domain of the Protein | 2e-08 | |
| cd05085 | 250 | cd05085, PTKc_Fer, Catalytic domain of the Protein | 2e-08 | |
| cd05038 | 284 | cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai | 2e-08 | |
| cd05034 | 261 | cd05034, PTKc_Src_like, Catalytic domain of Src ki | 5e-08 | |
| cd05084 | 252 | cd05084, PTKc_Fes, Catalytic domain of the Protein | 6e-08 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 6e-08 | |
| cd05082 | 256 | cd05082, PTKc_Csk, Catalytic domain of the Protein | 6e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-08 | |
| cd05092 | 280 | cd05092, PTKc_TrkA, Catalytic domain of the Protei | 2e-07 | |
| cd05113 | 256 | cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro | 2e-07 | |
| cd05052 | 263 | cd05052, PTKc_Abl, Catalytic domain of the Protein | 3e-07 | |
| cd05066 | 267 | cd05066, PTKc_EphR_A, Catalytic domain of the Prot | 7e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-07 | |
| COG0515 | 384 | COG0515, SPS1, Serine/threonine protein kinase [Ge | 9e-07 | |
| cd05036 | 277 | cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro | 1e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-06 | |
| cd05057 | 279 | cd05057, PTKc_EGFR_like, Catalytic domain of Epide | 2e-06 | |
| cd05063 | 268 | cd05063, PTKc_EphR_A2, Catalytic domain of the Pro | 3e-06 | |
| cd05071 | 262 | cd05071, PTKc_Src, Catalytic domain of the Protein | 9e-06 | |
| cd05044 | 269 | cd05044, PTKc_c-ros, Catalytic domain of the Prote | 9e-06 | |
| cd05079 | 284 | cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma | 1e-05 | |
| cd06605 | 265 | cd06605, PKc_MAPKK, Catalytic domain of the dual-s | 1e-05 | |
| cd06629 | 272 | cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o | 3e-05 | |
| cd05068 | 261 | cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re | 3e-05 | |
| cd05045 | 290 | cd05045, PTKc_RET, Catalytic domain of the Protein | 3e-05 | |
| cd05093 | 288 | cd05093, PTKc_TrkB, Catalytic domain of the Protei | 4e-05 | |
| cd05070 | 260 | cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro | 4e-05 | |
| cd06628 | 267 | cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o | 5e-05 | |
| cd08215 | 258 | cd08215, STKc_Nek, Catalytic domain of the Protein | 9e-05 | |
| cd05046 | 275 | cd05046, PTK_CCK4, Pseudokinase domain of the Prot | 1e-04 | |
| cd05060 | 257 | cd05060, PTKc_Syk_like, Catalytic domain of Spleen | 1e-04 | |
| cd05033 | 266 | cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec | 1e-04 | |
| cd05090 | 283 | cd05090, PTKc_Ror1, Catalytic domain of the Protei | 1e-04 | |
| cd05051 | 296 | cd05051, PTKc_DDR, Catalytic domain of the Protein | 1e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-04 | |
| cd06623 | 264 | cd06623, PKc_MAPKK_plant_like, Catalytic domain of | 2e-04 | |
| cd06624 | 268 | cd06624, STKc_ASK, Catalytic domain of the Protein | 2e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 2e-04 | |
| cd05098 | 307 | cd05098, PTKc_FGFR1, Catalytic domain of the Prote | 2e-04 | |
| cd05065 | 269 | cd05065, PTKc_EphR_B, Catalytic domain of the Prot | 4e-04 | |
| cd05080 | 283 | cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma | 4e-04 | |
| cd05089 | 297 | cd05089, PTKc_Tie1, Catalytic domain of the Protei | 6e-04 | |
| cd05056 | 270 | cd05056, PTKc_FAK, Catalytic domain of the Protein | 6e-04 | |
| cd05035 | 273 | cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li | 8e-04 | |
| cd05114 | 256 | cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro | 8e-04 | |
| cd05053 | 293 | cd05053, PTKc_FGFR, Catalytic domain of the Protei | 0.001 | |
| cd05072 | 261 | cd05072, PTKc_Lyn, Catalytic domain of the Protein | 0.001 | |
| cd05073 | 260 | cd05073, PTKc_Hck, Catalytic domain of the Protein | 0.001 | |
| cd05064 | 266 | cd05064, PTKc_EphR_A10, Catalytic domain of the Pr | 0.001 | |
| cd05088 | 303 | cd05088, PTKc_Tie2, Catalytic domain of the Protei | 0.001 | |
| cd05578 | 258 | cd05578, STKc_Yank1, Catalytic domain of the Prote | 0.001 | |
| cd05069 | 260 | cd05069, PTKc_Yes, Catalytic domain of the Protein | 0.002 | |
| cd08529 | 256 | cd08529, STKc_FA2-like, Catalytic domain of the Pr | 0.002 | |
| cd05067 | 260 | cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro | 0.003 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 6e-64
Identities = 148/405 (36%), Positives = 215/405 (53%), Gaps = 22/405 (5%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115
L+L L G IP NL+ L L ++ N G +P+ELGQ++ L+ + L YN LSG
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228
Query: 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVN 175
P IG L+ L L L YNN TGPIP+SL NL L+ L N + G IP I +L+KL++
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288
Query: 176 LGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235
L L +L G+IP + LQNL+ L L N +G IP + ++ +++L L SN+ SG +
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
Query: 236 PSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS 295
P +G N+ L LSTNNL G+IP + ++ L L L NS G IP + G R L
Sbjct: 349 PKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407
Query: 296 VLNVMMNNLTTE----------------SSSADQWSFLSSLTNCRNLSNLALASNPLGGI 339
+ + N+ + E S++ Q S + +L L+LA N G
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467
Query: 340 LPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHL 399
LP G S L+N+ +L N +G +P +G+L +L + EN L G +P +L
Sbjct: 468 LPDSFG--SKRLENL---DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522
Query: 400 ERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444
++L L+LS N+LSG IP + + L +L L N+LS IP +L
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 3e-61
Identities = 172/517 (33%), Positives = 243/517 (47%), Gaps = 81/517 (15%)
Query: 14 LLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTAL----------------- 56
LL+FK+ D L+N W+ S +C W GI+C + RV ++
Sbjct: 34 LLSFKSSINDPLKYLSN-WNSSADVCLWQGITC-NNSSRVVSIDLSGKNISGKISSAIFR 91
Query: 57 -------NLSDMGLGGTIP---------LHFGNLS--------------FLVSLDISENN 86
NLS+ L G IP L + NLS L +LD+S N
Sbjct: 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM 151
Query: 87 FHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNL 146
G +P ++G L+V+ L N L G P+ + L+ L L L N G IP L +
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211
Query: 147 SRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNK 206
L+ + +N + G IP IG L L +L L NL G IP+ +G+L+NL+ L L NK
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271
Query: 207 LSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266
LSG IPP+IF++ + L L N LSG +P + L+N+E L L +NN GKIP ++T+
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTS 330
Query: 267 ATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTE-----------------SS 309
+L L L N FSG IP G +L+VL++ NNLT E S+
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390
Query: 310 SADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP 369
S + SL CR+L + L N G LP F+ L +Y ++ N+L G I
Sbjct: 391 SLEG-EIPKSLGACRSLRRVRLQDNSFSGELPS---EFT-KLPLVYFLDISNNNLQGRIN 445
Query: 370 TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLREL 429
+ + LQ + N G +P D +RL L+LS N+ SG +P L SL+ L +L
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504
Query: 430 HLGSNKLSSSIPSSLAFRSFDSECEVLRN--VRHRNL 464
L NKLS IP L S C+ L + + H L
Sbjct: 505 KLSENKLSGEIPDEL------SSCKKLVSLDLSHNQL 535
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 6e-52
Identities = 126/389 (32%), Positives = 196/389 (50%), Gaps = 14/389 (3%)
Query: 63 LGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVL 122
L G IP G L+ L LD+ NN G +P LG L+ L+ + L NKLSG P I L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283
Query: 123 SKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN 182
KL L L N+ +G IP + L LE+L N G IP + +L +L L LWS
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343
Query: 183 LQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHS 242
G+IP +G NL LDL+ N L+G IP + + + L L SN L G +P ++G +
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-A 402
Query: 243 LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMN 302
R++ + L N+ G++P+ T + LD+ N+ G I + ++ L +L++ N
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462
Query: 303 NLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFN 362
L + L NL L+ N G +P+ +G+ S +Q +L N
Sbjct: 463 KFFGG---------LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ----LKLSEN 509
Query: 363 DLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLAS 422
L+G IP + + ++L + N L G +P + L+ L+LS N+LSG IP L +
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569
Query: 423 LTSLRELHLGSNKLSSSIPSSLAFRSFDS 451
+ SL ++++ N L S+PS+ AF + ++
Sbjct: 570 VESLVQVNISHNHLHGSLPSTGAFLAINA 598
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-26
Identities = 66/181 (36%), Positives = 92/181 (50%), Gaps = 1/181 (0%)
Query: 58 LSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPS 117
L D G +P F L + LDIS NN G + + L+++SLA NK G P
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470
Query: 118 WIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLG 177
G +L L L N F+G +P L +LS L L+ N + G IP + + +KLV+L
Sbjct: 471 SFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529
Query: 178 LWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237
L L GQIP + L LDL+ N+LSG IP + N+ ++ + + N L G LPS
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589
Query: 238 T 238
T
Sbjct: 590 T 590
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-26
Identities = 82/249 (32%), Positives = 125/249 (50%), Gaps = 16/249 (6%)
Query: 46 CGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMS 105
C S + + L L L G IP G L + + +N+F G LP E +L + +
Sbjct: 377 CSSGN--LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434
Query: 106 LAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPS 165
++ N L G S + L++L L N F G +P+S F RLE L N G +P
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPR 493
Query: 166 RIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILT 225
++G+L +L+ L L L G+IP E+ S + L +LDL+ N+LSG IP + + + L
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553
Query: 226 LESNQLSGRLPSTIGHSLRNIEYLA---LSTNNLIGKIPNS----ITNATKLIGLDL--G 276
L NQLSG +P +G N+E L +S N+L G +P++ NA+ + G G
Sbjct: 554 LSQNQLSGEIPKNLG----NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609
Query: 277 FNSFSGHIP 285
++ SG P
Sbjct: 610 GDTTSGLPP 618
|
Length = 968 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 3e-23
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 31/167 (18%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
K+ SS E E+L+ + H N++K+ + + LV+E+ GSL+ L
Sbjct: 24 KIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLK 83
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC----------------------- 531
+ L E L I++ + LEYL HS+ IIH
Sbjct: 84 ENEGKLSEDEILRILLQILEGLEYL---HSN-GIIHRDLKPENILLDSDNGKVKLADFGL 139
Query: 532 ---EGEDSVTQTTTMATIGYMAPE-YGSEGIVSAKCDVYSYGVLLME 574
D T + T YMAPE +G S K D++S GV+L E
Sbjct: 140 SKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYE 186
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 2e-21
Identities = 55/247 (22%), Positives = 92/247 (37%), Gaps = 50/247 (20%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
K S F E ++R + H N++K++ C+ + +V+E+M G L +L
Sbjct: 34 KTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLR 93
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------C---------------- 531
+ L + + L+ + + +EYL S IH C
Sbjct: 94 KNRPKLSLSDLLSFALQIARGMEYL----ESKNFIHRDLAARNCLVGENLVVKISDFGLS 149
Query: 532 ---EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFT 587
+D + I +MAPE EG ++K DV+S+GVLL E FT ++P M
Sbjct: 150 RDLYDDDYYRKRGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGM-- 207
Query: 588 GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647
+ E + + +C + DL L C E P+ R
Sbjct: 208 ------------SNEEVLEYLKNGYRLPQPP-----NCPPELYDLMLQCWAEDPEDRPTF 250
Query: 648 TDAAAKL 654
++ L
Sbjct: 251 SELVEIL 257
|
Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257 |
| >gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-20
Identities = 55/248 (22%), Positives = 89/248 (35%), Gaps = 51/248 (20%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL- 493
K S F E ++R + H N++K++ C+ + +V+E+MP G L +L
Sbjct: 34 KTLKEDASEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLR 93
Query: 494 YSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------C--------------- 531
+ L + + L+ + + +EYL S IH C
Sbjct: 94 KNRPKELSLSDLLSFALQIARGMEYL----ESKNFIHRDLAARNCLVGENLVVKISDFGL 149
Query: 532 ----EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMF 586
+D I +MAPE EG ++K DV+S+GVLL E FT + P M
Sbjct: 150 SRDLYDDDYYKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGM- 208
Query: 587 TGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646
+ E + +C + L L C E P+ R
Sbjct: 209 -------------SNAEVLEYLKKGYRLP-----KPPNCPPELYKLMLQCWAEDPEDRPT 250
Query: 647 MTDAAAKL 654
++ L
Sbjct: 251 FSELVEIL 258
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 46/230 (20%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLD 501
S ++ E +LR + H N++++I + + D LV+E+ G L +L
Sbjct: 38 KSKKDQTARREIRILRRLSHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPL-S 96
Query: 502 ILERLNIMIDVGSALEYLRHGHSSAPIIH-------------------------CEGEDS 536
E I + + LEYL H + IIH + S
Sbjct: 97 EDEAKKIALQILRGLEYL-HSNG---IIHRDLKPENILLDENGVVKIADFGLAKKLLKSS 152
Query: 537 VTQTTTMATIGYMAPE--YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRR 594
+ TT + T YMAPE G G K DV+S GV+L E T K P F+GE
Sbjct: 153 SSLTTFVGTPWYMAPEVLLGGNGY-GPKVDVWSLGVILYELLTGKPP----FSGE----- 202
Query: 595 WVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ ++ L +E +S+ + ++ C + P KR
Sbjct: 203 -NILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIK---KCLNKDPSKR 248
|
Length = 260 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 5e-18
Identities = 55/247 (22%), Positives = 95/247 (38%), Gaps = 61/247 (24%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
K S + F E V++ + H N+++++ C+ + LVLE+M G L +L
Sbjct: 29 KTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLR 88
Query: 495 SH--------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------C-------- 531
L + + L+ I + +EYL +S +H C
Sbjct: 89 KSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYL----ASKKFVHRDLAARNCLVGEDLVV 144
Query: 532 ------------EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR- 578
+ + +T I +MAPE +GI ++K DV+S+GVLL E FT
Sbjct: 145 KISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLG 204
Query: 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMD-CLLSIMDLALDCC 637
P + E+ ++++ +RL K + C + +L L C
Sbjct: 205 ATPYPGLSNEEV--LEYLRK--GYRL----------------PKPEYCPDELYELMLSCW 244
Query: 638 MESPDKR 644
P+ R
Sbjct: 245 QLDPEDR 251
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 51/231 (22%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLD 501
S F E +++ + H N+++++ C+ + +V E+MP G L +L H L
Sbjct: 41 SEEEREEFLEEASIMKKLSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLT 100
Query: 502 ILERLNIMIDVGSALEYLRHGHSSAPIIH-------C--------------------EGE 534
+ + L + + + +EYL S +H C E +
Sbjct: 101 LKDLLQMALQIAKGMEYL----ESKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDD 156
Query: 535 DSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLR 593
+ I +MAPE +G ++K DV+S+GVLL E FT ++P M
Sbjct: 157 YYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGM-------- 208
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
EV+ L+ + +C + +L L C P+ R
Sbjct: 209 ---------SNEEVL--ELLEDGYRLPRPENCPDELYELMLQCWAYDPEDR 248
|
Length = 258 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 33/175 (18%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
E ++L+ ++H N++++ + D LV+E+ G L L E
Sbjct: 42 ERILREIKILKKLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRL-SEDEAR 100
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC------------------------EGEDSVTQTTT 542
+ + SALEYL H I+H + + TT
Sbjct: 101 FYLRQILSALEYL-HSKG---IVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTF 156
Query: 543 MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVK 597
+ T YMAPE D++S GV+L E T K P F G+ L K
Sbjct: 157 VGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPP----FPGDDQLLELFK 207
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-15
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 41 WAGISCG----SRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELG 96
W+G C + L L + GL G IP L L S+++S N+ G++P LG
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463
Query: 97 QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF 156
+ L V+ L+YN +GS P +G L+ LRIL L+ N+ +G +P + L + RA F
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA---LGGRLLHRASF 520
Query: 157 NI 158
N
Sbjct: 521 NF 522
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-14
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 161 GTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNIST 220
G IP+ I LR L ++ L +++G IP +GS+ +L+ LDL+ N +G IP ++ +++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 221 MRILTLESNQLSGRLPSTIG 240
+RIL L N LSGR+P+ +G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 64/274 (23%), Positives = 103/274 (37%), Gaps = 56/274 (20%)
Query: 420 LASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKAL 479
L + L + K S+ A + F+ E E+L N +H N++K C+ D +
Sbjct: 26 CYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIM 85
Query: 480 VLEFMPNGSLEKWLYSHNYFLDIL-------------ERLNIMIDVGSALEYL---RHGH 523
V E+M +G L K+L SH L + L I + + S + YL H
Sbjct: 86 VFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVH 145
Query: 524 SSAPIIHC-EGEDSVTQT-------------------TTMATIGYMAPEYGSEGIVSAKC 563
+C G D V + TM I +M PE + +
Sbjct: 146 RDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTES 205
Query: 564 DVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAK 622
DV+S+GV+L E FT K+P W S + E + + +
Sbjct: 206 DVWSFGVVLWEIFTYGKQP-------------WYGLS-NEEVIECITQGRLLQRPR---- 247
Query: 623 MDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656
C + D+ L C P +R+++ D +L+K
Sbjct: 248 -TCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK 280
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 30/89 (33%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 176 LGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235
LGL + L+G IP +I L++L++++L+ N + G IPP++ +I+++ +L L N +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 236 PSTIGHSLRNIEYLALSTNNLIGKIPNSI 264
P ++G L ++ L L+ N+L G++P ++
Sbjct: 483 PESLGQ-LTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 5e-12
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 359 LGFND--LNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHI 416
LG ++ L G IP I L+ LQ + N+++G +P L + L +L+LS N +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 417 PPCLASLTSLRELHLGSNKLSSSIPSSLAFR 447
P L LTSLR L+L N LS +P++L R
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 66/261 (25%), Positives = 106/261 (40%), Gaps = 58/261 (22%)
Query: 422 SLTSLREL--------HLGS--NKLSSSI----PSSLAFRSFDSECEVLRNVRHRNLIKI 467
LT L+EL HLG K+ +I +++ F E +V+ + H NL+++
Sbjct: 5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQL 64
Query: 468 ISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL-RHG--HS 524
C+ +V E+M NG L +L L L++ DV A+EYL +G H
Sbjct: 65 YGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHR 124
Query: 525 SAPIIHC-EGEDSVTQ---------------TTTMAT---IGYMAPEYGSEGIVSAKCDV 565
+C GED+V + T++ T + + PE S+K DV
Sbjct: 125 DLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDV 184
Query: 566 YSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNL--VREEQAFSAKM 623
+S+GVL+ E F+ G+M R+ SEVV++ R + A
Sbjct: 185 WSFGVLMWEVFS---------EGKMPYERFSN-------SEVVESVSAGYRLYRPKLAPT 228
Query: 624 DCLLSIMDLALDCCMESPDKR 644
+ + C E P+ R
Sbjct: 229 ----EVYTIMYSCWHEKPEDR 245
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256 |
| >gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 37/253 (14%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKA--LVLEFMPNGSLEKW 492
KL S L R F+ E E+L++++H N++K C + + LV+E++P GSL +
Sbjct: 40 KLQHSTAEHL--RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDY 97
Query: 493 LYSHNYFLDILERLNIMIDVGSALEYL---RHGHSS---------------------API 528
L H LD + L + +EYL R+ H +
Sbjct: 98 LQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKV 157
Query: 529 IHCEGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT---RKRPTDEM 585
+ + E + + I + APE +E S DV+S+GV+L E FT +
Sbjct: 158 LPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAE 217
Query: 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645
F M + + + H + L++ A C I + +C P +R
Sbjct: 218 FMRMMGNDKQGQMIVYHLI------ELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRP 271
Query: 646 HMTDAAAKLKKIK 658
++ A +++ I+
Sbjct: 272 SFSELALQVEAIR 284
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 87/292 (29%), Positives = 126/292 (43%), Gaps = 25/292 (8%)
Query: 122 LSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSC 181
L L L L+ N I + L L+ L L + N I IP IG L+ + S
Sbjct: 92 LLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSD 149
Query: 182 NLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGH 241
N +P+ + +L NLKNLDL+ N LS +P + N+S + L L N++S LP I
Sbjct: 150 NKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207
Query: 242 SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMM 301
L +E L LS N++I ++ +S++N L GL+L N +P + GNL +L L++
Sbjct: 208 -LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSN 264
Query: 302 NNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGF 361
N + S +SSL + NL L L+ N L LP + +
Sbjct: 265 NQI----------SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL------- 307
Query: 362 NDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS 413
N L + L + N P L LE LN L N L
Sbjct: 308 NLLLTLKALELKLNSILLNNNILSNGE-TSSPEALSILESLNNLWTLDNALD 358
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 224 LTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGH 283
L L++ L G +P+ I LR+++ + LS N++ G IP S+ + T L LDL +NSF+G
Sbjct: 423 LGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 284 IPNTFGNLRHLSVLNVMMNNLTTESSSA 311
IP + G L L +LN+ N+L+ +A
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAA 509
|
Length = 623 |
| >gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 31/175 (17%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-HNYFL 500
L + F E + L+ +RH++LI + + CS + ++ E M GSL +L S L
Sbjct: 42 DLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVL 101
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSVTQ------------- 539
+ +++ V + YL + IH + GED V +
Sbjct: 102 PVASLIDMACQVAEGMAYLEEQN----SIHRDLAARNILVGEDLVCKVADFGLARLIKED 157
Query: 540 --TTTMATIGY--MAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGE 589
++ I Y APE S G S K DV+S+G+LL E FT + P M E
Sbjct: 158 VYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHE 212
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261 |
| >gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
R F E E+L+ H N++K+I C +V+E +P GSL +L L + + L
Sbjct: 37 RKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLL 96
Query: 507 NIMIDVGSALEYLRHGHSSAPIIH-------C--------------------EGEDSVTQ 539
+ +D + +EYL S IH C G +V+
Sbjct: 97 QMSLDAAAGMEYLE----SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSD 152
Query: 540 TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
I + APE + G +++ DV+SYG+LL ETF+
Sbjct: 153 GLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFS 190
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-10
Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 54/185 (29%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKAL--VLEFMPNGSLEKW 492
+LS L + + E +L +++H N+++ S + + L LE++ GSL
Sbjct: 34 ELSGDSEEEL--EALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSL 91
Query: 493 LYS---------HNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC------------ 531
L Y ILE L YL H + I+H
Sbjct: 92 LKKFGKLPEPVIRKYTRQILE----------GLAYL-HSNG---IVHRDIKGANILVDSD 137
Query: 532 --------------EGEDSVTQTTTMA-TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576
++ T ++ T +MAPE D++S G ++E
Sbjct: 138 GVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMA 197
Query: 577 TRKRP 581
T K P
Sbjct: 198 TGKPP 202
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDIL 503
A ++F +E V+ +RH NL++++ + +V E+M GSL +L S + +
Sbjct: 43 AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLA 102
Query: 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV--------------TQTT 541
++L +DV +EYL +H + ED V Q +
Sbjct: 103 QQLGFALDVCEGMEYLE----EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDS 158
Query: 542 TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580
+ + APE E S K DV+S+G+LL E ++ R
Sbjct: 159 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGR 197
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256 |
| >gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 41/160 (25%), Positives = 57/160 (35%), Gaps = 34/160 (21%)
Query: 455 VLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGS 514
+L + H ++K+ + + LVLE+ P G L L F + R ++
Sbjct: 46 ILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARF-YAAEIVL 104
Query: 515 ALEYLRHGHSSAPIIH------------------------CEGEDSVTQTTTMA-TIGYM 549
ALEYL H II+ E ++T T T Y+
Sbjct: 105 ALEYL-HSLG---IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYL 160
Query: 550 APEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589
APE D +S GVLL E T K P F E
Sbjct: 161 APEVLLGKGYGKAVDWWSLGVLLYEMLTGKPP----FYAE 196
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250 |
| >gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 3e-09
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 29/186 (15%)
Query: 430 HLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSL 489
+ G +I + ++F E V+ + H+NL++++ + +V+E M G+L
Sbjct: 27 YTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHNGLY-IVMELMSKGNL 85
Query: 490 EKWLYSHNYFL-DILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSVTQT 540
+L + L +++ L +DV +EYL S ++H + ED V +
Sbjct: 86 VNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE----SKKLVHRDLAARNILVSEDGVAKV 141
Query: 541 --------------TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR-PTDEM 585
+ + + APE S+K DV+SYGVLL E F+ R P +M
Sbjct: 142 SDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKM 201
Query: 586 FTGEMS 591
E+
Sbjct: 202 SLKEVK 207
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254 |
| >gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 5e-09
Identities = 56/248 (22%), Positives = 98/248 (39%), Gaps = 58/248 (23%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---- 496
P+ A + F E E+L N++H +++K C + D +V E+M +G L K+L +H
Sbjct: 46 PTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDA 105
Query: 497 -----------NYFLDILERLNIMIDVGSALEYLRHGH------------SSAPIIHCEG 533
L + + L+I + S + YL H A ++ G
Sbjct: 106 MILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIG 165
Query: 534 EDSVTQTT-----------TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRP 581
+ +++ TM I +M PE + + DV+S+GV+L E FT K+P
Sbjct: 166 DFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQP 225
Query: 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641
W + S + E + V E C + D+ L C P
Sbjct: 226 -------------WFQLS-NTEVIECITQGRVLERPRV-----CPKEVYDIMLGCWQREP 266
Query: 642 DKRMHMTD 649
+R+++ +
Sbjct: 267 QQRLNIKE 274
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 326 LSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPE 385
+ L L + L G +P I + L+++ + L N + G IP S+G++ L+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDI----SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475
Query: 386 NNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASL 423
N+ G +P L L L ILNL+GN LSG +P L
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 35/228 (15%)
Query: 437 SSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH 496
+SIPSS E + ++H N++K+I C + L+ E++ +L + L +
Sbjct: 726 VNSIPSS--------EIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN- 776
Query: 497 NYFLDILERLNIMIDVGSALEYLR--------HGHSSAPIIHCEGEDS-----------V 537
L R I I + AL +L G+ S I +G+D
Sbjct: 777 ---LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLC 833
Query: 538 TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVK 597
T T + Y+APE ++ K D+Y +G++L+E T K P D F S+ W +
Sbjct: 834 TDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWAR 893
Query: 598 ESLPH-RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
L +D ++ + S + ++ +M+LAL C P R
Sbjct: 894 YCYSDCHLDMWIDPSIRGD---VSVNQNEIVEVMNLALHCTATDPTAR 938
|
Length = 968 |
| >gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 34/174 (19%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
++S A +S E ++L+N++H N++K I S D ++LE+ NGSL + +
Sbjct: 32 QISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIK 91
Query: 495 SHNYFLDILERLNI--MIDVGSALEYLRHGHSSAPIIHCE-------------------- 532
F E L + V L YL H +IH +
Sbjct: 92 KFGPF---PESLVAVYVYQVLQGLAYL-HEQG---VIHRDIKAANILTTKDGVVKLADFG 144
Query: 533 -----GEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
+ S + + T +MAPE S D++S G ++E T P
Sbjct: 145 VATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPP 198
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 74/325 (22%), Positives = 124/325 (38%), Gaps = 47/325 (14%)
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN 245
+ +L L +LDL N+L I + ++ + L L++N ++ +P IG N
Sbjct: 84 DGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSN 141
Query: 246 IEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT 305
++ L LS N I +P+ + N L LDL FN +L L L ++NL
Sbjct: 142 LKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-----------DLSDLPKLLSNLSNLN 189
Query: 306 TESSSADQWSFLSSLTN-CRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDL 364
S ++ S L L L L++N +
Sbjct: 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSII--------------------------- 222
Query: 365 NGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLT 424
+ +S+ L+ L G + NN +P + +L L L+LS N++S L SLT
Sbjct: 223 --ELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLT 277
Query: 425 SLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFM 484
+LREL L N LS+++P L +K+ S N + +
Sbjct: 278 NLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSS 337
Query: 485 PNGSLEKWLYSHNYFLDILERLNIM 509
P ++ + LD + +
Sbjct: 338 PEALSILESLNNLWTLDNALDESNL 362
|
Length = 394 |
| >gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 49/249 (19%), Positives = 99/249 (39%), Gaps = 64/249 (25%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----------- 497
F E E++ +++H N++ ++ C+ ++ E++ +G L ++L ++
Sbjct: 55 FRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGD 114
Query: 498 ----YFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------CEGEDSVT-------- 538
LD + L+I I + + +EYL SS +H C + +T
Sbjct: 115 ETVKSSLDCSDFLHIAIQIAAGMEYL----SSHHFVHRDLAARNCLVGEGLTVKISDFGL 170
Query: 539 ------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMF 586
Q+ ++ + +M PE G + + D++S+GV+L E F+ F
Sbjct: 171 SRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGF 230
Query: 587 TGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646
+ + EV+ ++R Q DC + L ++C E P +R
Sbjct: 231 SNQ----------------EVI--EMIRSRQLLPCPEDCPARVYALMIECWNEIPARRPR 272
Query: 647 MTDAAAKLK 655
D +L+
Sbjct: 273 FKDIHTRLR 281
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283 |
| >gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 31/169 (18%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
F E +V+ + H L+++ C+ LV EFM +G L +L + L +
Sbjct: 46 FIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGM 105
Query: 509 MIDVGSALEYLRHGHSSAPIIHCE--------GEDSV------------------TQTTT 542
+DV + YL S+ +IH + GE+ V + T T
Sbjct: 106 CLDVCEGMAYLE----SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGT 161
Query: 543 MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEM 590
+ + +PE S S+K DV+S+GVL+ E F+ K P + E+
Sbjct: 162 KFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEV 210
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256 |
| >gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 440 IPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF 499
+P L + F SE +L+ H N++K+I C+ +V+E +P G +L
Sbjct: 31 LPQELKIK-FLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDE 89
Query: 500 LDILERLNIMIDVGSALEYLRHG---HSSAPIIHC-EGEDSVTQTTTMAT---------- 545
L + + +D + + YL H +C GE++V + +
Sbjct: 90 LKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYS 149
Query: 546 --------IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
I + APE + G S++ DV+SYG+LL ETF+
Sbjct: 150 SSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFS 189
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250 |
| >gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 26/162 (16%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA--LVLEFMPNGSLEKWLYSHNYFLDILE 504
F+ E E+LR + H N++K C P ++ L++E++P+GSL +L H +++
Sbjct: 51 SDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKR 110
Query: 505 RLNIMIDVGSALEYLR-----HGHSSAPIIHCEGEDSV-------TQTTTM--------- 543
L + ++YL H +A I E ED V +
Sbjct: 111 LLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKE 170
Query: 544 ---ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582
+ I + APE S+ DV+S+GV L E FT P+
Sbjct: 171 PGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPS 212
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284 |
| >gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 23/163 (14%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-HNYF 499
P +++ +F E ++++ +RH L+++ + CS + +V E+M GSL +L S
Sbjct: 40 PGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKK 99
Query: 500 LDILERLNIMIDVGSALEYL---RHGH---SSAPIIHCEG--------------EDS--V 537
L + + +++ + + YL + H ++ I+ E ED
Sbjct: 100 LRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYT 159
Query: 538 TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580
+ I + APE + G + K DV+S+G+LL E T R
Sbjct: 160 AREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGR 202
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261 |
| >gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 6e-08
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
F E +L+ H N++++I C+ +V+E + G +L + L + E + +
Sbjct: 40 FLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQM 99
Query: 509 MIDVGSALEYLRHGHSSAPIIH-------C-----------------EGEDSVTQTT--- 541
+ + + +EYL H IH C E ED V +T
Sbjct: 100 VENAAAGMEYLESKHC----IHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGM 155
Query: 542 TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
+ + APE + G S++ DV+S+G+LL E F+
Sbjct: 156 KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFS 191
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 28/154 (18%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511
E ++L+ +H N++K S D +V+EF GSL+ L S N L + + +
Sbjct: 47 EIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKE 106
Query: 512 VGSALEYLRHGHSSAPIIH------------------------CEGEDSVTQTTTMATIG 547
+ LEYL H + IIH + D+ + T + T
Sbjct: 107 LLKGLEYL-HSNG---IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPY 162
Query: 548 YMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
+MAPE + K D++S G+ +E K P
Sbjct: 163 WMAPEVINGKPYDYKADIWSLGITAIELAEGKPP 196
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 6e-08
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA-LVLEFMPNGSLEKWLYSHN-YFLDILE 504
++F +E V+ +RH NL++++ +V E+M GSL +L S L
Sbjct: 44 QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC 103
Query: 505 RLNIMIDVGSALEYLRHGH------SSAPIIHCEG------------EDSVTQTTTMATI 546
L +DV A+EYL + ++ ++ E E S TQ T +
Sbjct: 104 LLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 163
Query: 547 GYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580
+ APE E S K DV+S+G+LL E ++ R
Sbjct: 164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGR 197
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 128 LRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQI 187
L LD G IPN + L L+ + N I G IP +G++ L L L + G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 188 PTEIGSLQNLKNLDLADNKLSGLIP 212
P +G L +L+ L+L N LSG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 65/254 (25%)
Query: 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILE 504
A + F E E+L ++H+++++ C+ +V E+M +G L ++L SH IL
Sbjct: 50 ARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILA 109
Query: 505 R--------------LNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSVTQT-- 540
L I + S + YL H +H + G+ V +
Sbjct: 110 GGEDVAPGQLTLGQMLAIASQIASGMVYLASLH----FVHRDLATRNCLVGQGLVVKIGD 165
Query: 541 -----------------TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPT 582
TM I +M PE + + D++S+GV+L E FT K+P
Sbjct: 166 FGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQP- 224
Query: 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642
W ++LS + + + C + + C P
Sbjct: 225 ------------W------YQLSNTEAIECITQGRELERPRTCPPEVYAIMQGCWQREPQ 266
Query: 643 KRMHMTDAAAKLKK 656
+RM + D ++L+
Sbjct: 267 QRMVIKDIHSRLQA 280
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280 |
| >gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 37/197 (18%)
Query: 443 SLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDI 502
S++ F E +V+ + H L+++ C+ +V E+M NG L +L H
Sbjct: 40 SMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQP 99
Query: 503 LERLNIMIDVGSALEYLRHGHSSAPIIH-------CEGEDSVT----------------Q 539
+ L + DV + YL S IH C +D
Sbjct: 100 SQLLEMCKDVCEGMAYLE----SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY 155
Query: 540 TTTMAT---IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRW 595
T+++ + + + PE S+K DV+++GVL+ E ++ K P + E +
Sbjct: 156 TSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEK-- 213
Query: 596 VKESL----PHRLSEVV 608
V + L PH SE V
Sbjct: 214 VSQGLRLYRPHLASEKV 230
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256 |
| >gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 33/163 (20%)
Query: 443 SLAFRSFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHN-YFL 500
++ F E V++ ++H NL++++ C+ P F ++ EFM G+L +L N +
Sbjct: 43 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF-YIITEFMTYGNLLDYLRECNRQEV 101
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV------------TQT 540
+ + L + + SA+EYL + IH + GE+ + T
Sbjct: 102 NAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 157
Query: 541 TTMATIG------YMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
T A G + APE + S K DV+++GVLL E T
Sbjct: 158 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 200
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263 |
| >gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 7e-07
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 44/236 (18%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
R F SE ++ H N+I + + +V E+M NGSL+ +L H+ +++ +
Sbjct: 50 RDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLV 109
Query: 507 NIMIDVGSALEYLR-----HGHSSA-------------------PIIHCEGEDSVTQTTT 542
++ + S ++YL H +A ++ + E + T
Sbjct: 110 GMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 169
Query: 543 MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESLP 601
I + APE + ++ DV+SYG+++ E + +RP EMS + +K
Sbjct: 170 KIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERP-----YWEMSNQDVIKA--- 221
Query: 602 HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+ E A MDC ++ L LDC + ++R + L K+
Sbjct: 222 -----------IEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL 266
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
L G P+ I L L+ + L N+ G IP SL +++ LE+L +N G+IP +G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 171 RKLVNLGLWSCNLQGQIPTEIGSL 194
L L L +L G++P +G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.3 bits (121), Expect = 9e-07
Identities = 48/249 (19%), Positives = 80/249 (32%), Gaps = 41/249 (16%)
Query: 436 LSSSIPSSLAFRSFDSECEVLRNVRH-RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
S F E ++L ++ H N++K+ + LV+E++ GSLE L
Sbjct: 31 AKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLK 90
Query: 495 SHNYFLDILERLN--IMIDVGSALEYLRHGH----------------------------S 524
+ E I+ + SALEYL
Sbjct: 91 KIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAK 150
Query: 525 SAPIIHCEGEDSVTQTTTMATIGYMAPEY---GSEGIVSAKCDVYSYGVLLMETFTRKRP 581
P +T++ T GYMAPE S S+ D++S G+ L E T P
Sbjct: 151 LLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPP 210
Query: 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641
+ + S ++ + T + + S + DL + P
Sbjct: 211 FE-------GEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDP 263
Query: 642 DKRMHMTDA 650
R+ +
Sbjct: 264 KNRLSSSSD 272
|
Length = 384 |
| >gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 44/167 (26%)
Query: 449 FDSECEVLRNVRHRNLIKIISSC--SNPDFKALVLEFMPNGSLEKWLY------SHNYFL 500
F E ++ H+N++++I P F ++LE M G L+ +L L
Sbjct: 56 FLMEALIMSKFNHQNIVRLIGVSFERLPRF--ILLELMAGGDLKSFLRENRPRPERPSSL 113
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDSVTQTT-------- 541
+ + L DV +YL H IH C+G V +
Sbjct: 114 TMKDLLFCARDVAKGCKYLEENH----FIHRDIAARNCLLTCKGPGRVAKIADFGMARDI 169
Query: 542 -----------TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
M I +M PE +GI ++K DV+S+GVLL E F+
Sbjct: 170 YRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFS 216
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 66/204 (32%), Positives = 92/204 (45%), Gaps = 8/204 (3%)
Query: 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111
+ L+LSD + ++P NL L +LD+S N+ LPK L L L + L+ NK+
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198
Query: 112 SGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLR 171
S P I +LS L L L NN + +SL NL L L N + +P IGNL
Sbjct: 199 S-DLPPEIELLSALEELDL-SNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLS 255
Query: 172 KLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTI-FNISTMRILTLESNQ 230
L L L S N I +GSL NL+ LDL+ N LS +P + +L L
Sbjct: 256 NLETLDL-SNNQISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313
Query: 231 LSGRLPSTIGHSLRNIEYLALSTN 254
+ L NI +++
Sbjct: 314 KALELKLNSILLNNNILSNGETSS 337
|
Length = 394 |
| >gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 33/175 (18%)
Query: 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILE 504
A + E V+ +V H ++++++ C + L+ + MP G L ++ +H +
Sbjct: 52 ANKEILDEAYVMASVDHPHVVRLLGICLSSQV-QLITQLMPLGCLLDYVRNHKDNIGSQY 110
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHCE---------------------------GEDSV 537
LN + + + YL ++H + E
Sbjct: 111 LLNWCVQIAKGMSYLEEKR----LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEY 166
Query: 538 TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMS 591
I +MA E I + K DV+SYGV + E T +P + + E+
Sbjct: 167 HAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIP 221
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279 |
| >gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 52/267 (19%), Positives = 102/267 (38%), Gaps = 56/267 (20%)
Query: 428 ELHLGSNKLSSSIPSSLAFRS------------FDSECEVLRNVRHRNLIKIISSCSNPD 475
E+ G K+ ++A ++ F SE ++ H N+I++ +
Sbjct: 20 EVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFK 79
Query: 476 FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR-----HGHSSAPII- 529
++ E+M NG+L+K+L H+ + + ++ + + ++YL H +A I
Sbjct: 80 PAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNIL 139
Query: 530 -----HCEGED-----------SVTQTTTMATIG--YMAPEYGSEGIVSAKCDVYSYGVL 571
C+ D T TT+ I + APE + ++ DV+S+G++
Sbjct: 140 VNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIV 199
Query: 572 LMETFTR-KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIM 630
+ E + +RP +M E+ + + A MDC ++
Sbjct: 200 MWEVMSFGERPYWDMSNHEV-------------------MKAINDGFRLPAPMDCPSAVY 240
Query: 631 DLALDCCMESPDKRMHMTDAAAKLKKI 657
L L C + +R D L K+
Sbjct: 241 QLMLQCWQQDRARRPRFVDIVNLLDKL 267
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268 |
| >gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 9e-06
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 48/230 (20%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLY-SHNY 498
P +++ +F E +V++ +RH L+++ + S P + +V E+M GSL +L
Sbjct: 40 PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIY--IVTEYMSKGSLLDFLKGEMGK 97
Query: 499 FLDILERLNIMIDVGSALEYLR-----HGHSSAPIIHCEGEDSVTQTTTMA--------- 544
+L + + +++ + S + Y+ H A I GE+ V +
Sbjct: 98 YLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV-GENLVCKVADFGLARLIEDNE 156
Query: 545 ---------TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR-PTDEMFTGEMSLRR 594
I + APE G + K DV+S+G+LL E T+ R P M
Sbjct: 157 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN------- 209
Query: 595 WVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
EV+D V +C S+ DL C + P++R
Sbjct: 210 ----------REVLDQ--VERGYRMPCPPECPESLHDLMCQCWRKEPEER 247
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262 |
| >gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 42/170 (24%)
Query: 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS------HNYF 499
+ F E ++ N H N++K++ C + + +++E M G L +L
Sbjct: 43 KKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPL 102
Query: 500 LDILERLNIMIDVGSALEYLRHGHSSAPIIH-------CEGEDSVTQTTTMATIG----- 547
L + E L+I +DV YL H IH C + + IG
Sbjct: 103 LTLKELLDICLDVAKGCVYLEQMH----FIHRDLAARNCLVSEKGYDADRVVKIGDFGLA 158
Query: 548 --------------------YMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
+MAPE +G + + DV+S+GVL+ E T
Sbjct: 159 RDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILT 208
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269 |
| >gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 50/242 (20%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKA--LVLEFMPNGSLEKWLYSHNYFLDILERLNIM 509
E E+LRN+ H N++K C+ L++EF+P+GSL+++L + +++ ++L
Sbjct: 56 EIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYA 115
Query: 510 IDVGSALEYLR-----HGHSSAPIIHCEGEDSV-------TQTTTMATIGYMAPE----- 552
+ + ++YL H +A + E E V T+ Y +
Sbjct: 116 VQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSP 175
Query: 553 ---YGSEGIVSAK----CDVYSYGVLLMETFT----RKRPTDEMFT------GEMSLRRW 595
Y E ++ +K DV+S+GV L E T P G+M++ R
Sbjct: 176 VFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRL 235
Query: 596 VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655
V+ ++ E + +C + L C P KR + +
Sbjct: 236 VR--------------VLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFE 281
Query: 656 KI 657
I
Sbjct: 282 AI 283
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284 |
| >gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 32/157 (20%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL--YSHNYFLDILERLNI 508
E ++L ++ + N ++ +E+M GSL+K L IL + I
Sbjct: 48 RELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGK--I 105
Query: 509 MIDVGSALEYLRHGHSSAPIIH------------------CE----GE--DSVTQTTTMA 544
+ V L YL H IIH C+ G+ +S+ +T
Sbjct: 106 AVAVLKGLTYLHEKHK---IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFV-G 161
Query: 545 TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
T YMAPE S K D++S G+ L+E T + P
Sbjct: 162 TSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFP 198
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265 |
| >gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 36/170 (21%)
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLN 507
+ SE E L+++ H N+++ + + ++ ++ LE++P GS+ L ++ F + L R
Sbjct: 54 ALRSEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVR-F 112
Query: 508 IMIDVGSALEYLRHGHSSAPIIH---------------CEGED-----------SVTQTT 541
V L YL HS I+H C+ D Q
Sbjct: 113 FTEQVLEGLAYL---HSKG-ILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNM 168
Query: 542 TM-ATIGYMAPE--YGSEGIVSAKCDVYSYGVLLMETFTRKRP--TDEMF 586
+M ++ +MAPE + SAK D++S G +++E F +RP +E
Sbjct: 169 SMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAI 218
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272 |
| >gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY-SHNYF 499
P ++ + F +E ++++ +RH LI++ + C+ + +V E M GSL ++L
Sbjct: 40 PGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRA 99
Query: 500 LDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV-------------- 537
L + + +++ V S + YL + IH + GE+++
Sbjct: 100 LKLPQLIDMAAQVASGMAYLEAQN----YIHRDLAARNVLVGENNICKVADFGLARVIKE 155
Query: 538 ----TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580
+ I + APE S K DV+S+G+LL E T R
Sbjct: 156 DIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGR 202
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261 |
| >gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 66/266 (24%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL-------- 493
SS R SE +L+ V H ++IK+ +CS L++E+ GSL +L
Sbjct: 43 SSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGP 102
Query: 494 ---------YSHNYFLDILERLNIMI------DVGSALEYLR-----HGHSSA-PIIHCE 532
S L + + ++YL H +A ++ E
Sbjct: 103 SYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAE 162
Query: 533 G----------------EDS-VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575
G EDS V ++ + +MA E + I + + DV+S+GVLL E
Sbjct: 163 GRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEI 222
Query: 576 FTR-KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLAL 634
T P + G R + NL++ +C + +L L
Sbjct: 223 VTLGGNP----YPGIAPERLF---------------NLLKTGYRMERPENCSEEMYNLML 263
Query: 635 DCCMESPDKRMHMTDAAAKLKKIKVK 660
C + PDKR D + +L+K+ VK
Sbjct: 264 TCWKQEPDKRPTFADISKELEKMMVK 289
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290 |
| >gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 44/189 (23%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---- 497
S A + F E E+L N++H +++K C D +V E+M +G L K+L +H
Sbjct: 47 SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAV 106
Query: 498 --------YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSVTQTT 541
L + L+I + + + YL H +H + GE+ + +
Sbjct: 107 LMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH----FVHRDLATRNCLVGENLLVKIG 162
Query: 542 -------------------TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRP 581
TM I +M PE + + DV+S GV+L E FT K+P
Sbjct: 163 DFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQP 222
Query: 582 TDEMFTGEM 590
++ E+
Sbjct: 223 WYQLSNNEV 231
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288 |
| >gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 50/231 (21%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYS---H 496
P +++ SF E ++++ +RH L+++ + S P + +V E+M GSL +L
Sbjct: 40 PGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIY--IVTEYMSKGSLLDFLKDGEGR 97
Query: 497 NYFLDILERLNIMIDVGSA----LEYLRHGHSSAPIIHCEG--------------EDSVT 538
L L + + G A + Y+ SA I+ +G ED+
Sbjct: 98 ALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEY 157
Query: 539 QTTTMAT--IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR-PTDEMFTGEM--SLR 593
A I + APE G + K DV+S+G+LL E T+ R P M E+ +
Sbjct: 158 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVE 217
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
R + P DC +S+ +L L C + P++R
Sbjct: 218 RGYRMPCPQ---------------------DCPISLHELMLQCWKKDPEER 247
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260 |
| >gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 36/161 (22%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511
E +L+ ++H N+++ + S + D + LE++P GS+ L ++ F + L R N +
Sbjct: 56 EIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVR-NFVRQ 114
Query: 512 VGSALEYLRHGHSSAPIIH--CEG----------------------EDSVTQTTT----- 542
+ L YL H+ IIH +G E + T T
Sbjct: 115 ILKGLNYL---HNRG-IIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARP 170
Query: 543 --MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
++ +MAPE + + K D++S G L++E T K P
Sbjct: 171 SLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHP 211
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267 |
| >gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 9e-05
Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 48/173 (27%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDIL---ERLN 507
+E ++L+ + H N+IK S +V+E+ G L + + + L+
Sbjct: 48 NEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILD 107
Query: 508 IMIDVGSALEYLRHGHSSAPIIHC-----------EG-------------EDSVTQTTTM 543
+ + AL+YL H I+H G +V T+
Sbjct: 108 WFVQLCLALKYL-HSRK---ILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTV 163
Query: 544 A-TIGYMAPE------YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589
T Y++PE Y + K D++S G +L E T K P F GE
Sbjct: 164 VGTPYYLSPELCQNKPY------NYKSDIWSLGCVLYELCTLKHP----FEGE 206
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258 |
| >gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 39/201 (19%), Positives = 83/201 (41%), Gaps = 46/201 (22%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDIL----- 503
F E ++ R + H+N+++++ C + ++LE+ G L+++L + + L
Sbjct: 55 FRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPL 114
Query: 504 ---ERLNIMIDVGSALEYLRHGHSSAPIIHCE----------------GEDSVTQTT--- 541
+++ + + +++L S+A +H + S+++
Sbjct: 115 STKQKVALCTQIALGMDHL----SNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNS 170
Query: 542 -------TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR------KRPTDEMFTG 588
+ + ++APE E S K DV+S+GVL+ E FT+ +E+
Sbjct: 171 EYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNR 230
Query: 589 --EMSLRRWVKESLPHRLSEV 607
L V E P RL ++
Sbjct: 231 LQAGKLELPVPEGCPSRLYKL 251
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275 |
| >gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
+ F E V+ + H ++++I C LV+E P G L K+L +
Sbjct: 41 KEFLREASVMAQLDHPCIVRLIGVCKGEPL-MLVMELAPLGPLLKYLKKRREIPVS-DLK 98
Query: 507 NIMIDVGSALEYL-------------------RH-------GHSSAPIIHCEGEDSVTQT 540
+ V + YL RH G S A G S
Sbjct: 99 ELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRA-----LGAGSDYYR 153
Query: 541 TTMA---TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEM 585
T A + + APE + G S+K DV+SYGV L E F+ +P EM
Sbjct: 154 ATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEM 202
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257 |
| >gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 48/235 (20%), Positives = 101/235 (42%), Gaps = 45/235 (19%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
F +E ++ H N+I++ + ++ E+M NGSL+K+L ++ + + +
Sbjct: 50 LDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLV 109
Query: 507 NIMIDVGSALEYL------------RHGHSSAPIIHC---------EGEDSVTQTTTMA- 544
++ + S ++YL R+ ++ ++ C EDS TT
Sbjct: 110 GMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLV-CKVSDFGLSRRLEDSEATYTTKGG 168
Query: 545 --TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESLP 601
I + APE + ++ DV+S+G+++ E + +RP +M + + ++ V++
Sbjct: 169 KIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDM-SNQDVIKA-VEDG-- 224
Query: 602 HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656
+RL MDC ++ L LDC + ++R + + L K
Sbjct: 225 YRL---------------PPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDK 264
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266 |
| >gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 54/272 (19%), Positives = 100/272 (36%), Gaps = 57/272 (20%)
Query: 423 LTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLE 482
L + L + K I + + F E ++ + H N++ ++ + ++ E
Sbjct: 28 LPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFE 87
Query: 483 FMPNGSLEKWLYSHN----------------YFLDILERLNIMIDVGSALEYLR-----H 521
++ G L ++L + LD + L+I I + + +EYL H
Sbjct: 88 YLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVH 147
Query: 522 GHSSAPII------HCEGED------------SVTQTTTMATIGYMAPEYGSEGIVSAKC 563
+A I H + D Q ++ I +M PE G S+
Sbjct: 148 KDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDS 207
Query: 564 DVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKM 623
D++S+GV+L E F+ F+ + EV++ +VR+ Q
Sbjct: 208 DIWSFGVVLWEIFSFGLQPYYGFSNQ----------------EVIE--MVRKRQLLPCSE 249
Query: 624 DCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655
DC + L +C E P +R D +L+
Sbjct: 250 DCPPRMYSLMTECWQEGPSRRPRFKDIHTRLR 281
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283 |
| >gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 43/177 (24%)
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER-- 505
F E ++L + N+ +++ C+ +++E+M NG L ++L H L
Sbjct: 65 DFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNS 124
Query: 506 --------LNIMIDVGSALEYLRHGHSSAPIIH-------CEGEDSVT------------ 538
L + + S + YL S +H C + T
Sbjct: 125 KSLSFSTLLYMATQIASGMRYL----ESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNL 180
Query: 539 --------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT--RKRPTDEM 585
Q I +MA E G + K DV+++GV L E T R++P + +
Sbjct: 181 YSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHL 237
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 246 IEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT 305
I+ L L L G IPN I+ L ++L NS G+IP + G++ L VL++ N+
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 306 TESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIG 345
S SL +L L L N L G +P +G
Sbjct: 480 G--------SIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 51/166 (30%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFK----ALVLEFMPNGSLEKWLYSHNYFLD-ILERL 506
E + LR+ ++K C +K ++VLE+M GSL L + +L +
Sbjct: 49 ELKTLRSCESPYVVK----CYGAFYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYI 104
Query: 507 NIMIDVGSALEYLRHGHSSAPIIH-----------CEGE----D-----SVTQTTTMA-- 544
I G L+YL H+ IIH +GE D + T
Sbjct: 105 ARQILKG--LDYL---HTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNT 159
Query: 545 ---TIGYMAPE------YGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
T+ YM+PE Y S D++S G+ L+E K P
Sbjct: 160 FVGTVTYMSPERIQGESY------SYAADIWSLGLTLLECALGKFP 199
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264 |
| >gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 34/157 (21%)
Query: 459 VRHRNLIKIISSCSNPDFKALVLEFMPNGSLE-----KW--LYSHN-----YFLDILERL 506
++HRN+++ + S S F + +E +P GSL KW L + Y ILE L
Sbjct: 62 LKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGL 121
Query: 507 ----------------NIMIDVGSALEYLRHGHSSAPIIHCEGEDSVTQTTTMATIGYMA 550
N++++ S + + +S + G + T+T T T+ YMA
Sbjct: 122 KYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRL---AGINPCTETFT-GTLQYMA 177
Query: 551 PEYGSEGI--VSAKCDVYSYGVLLMETFTRKRPTDEM 585
PE +G A D++S G ++E T K P E+
Sbjct: 178 PEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIEL 214
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 19/158 (12%)
Query: 304 LTTESSSADQWSFLSSLTNCRNLSNLALASNPLG-GILPQLIGNFSASLQNIYAFELGFN 362
L+ + D L SL +L L L +N LG L L + LG N
Sbjct: 88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147
Query: 363 DLNGTIPT-------SIGTLQQLQGFYVPENNLQG----YVPHDLCHLERLNILNLSGNK 411
L G + L++L + N + + L L +L+L+ N
Sbjct: 148 RLEGASCEALAKALRANRDLKELN---LANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204
Query: 412 L----SGHIPPCLASLTSLRELHLGSNKLSSSIPSSLA 445
L + + LASL SL L+LG N L+ + ++LA
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 47/170 (27%)
Query: 451 SECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL---------YSHN--- 497
SE E+++ + +H+N+I ++ +C+ +++E+ G+L ++L Y +N
Sbjct: 72 SEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQ 131
Query: 498 ---YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSVTQ------- 539
L + ++ V +EYL +S IH + ED+V +
Sbjct: 132 VPEEQLSFKDLVSCAYQVARGMEYL----ASKKCIHRDLAARNVLVTEDNVMKIADFGLA 187
Query: 540 ------------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
T + +MAPE + I + + DV+S+GVLL E FT
Sbjct: 188 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 237
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307 |
| >gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 46/238 (19%), Positives = 95/238 (39%), Gaps = 46/238 (19%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
R F SE ++ H N+I + + ++ EFM NG+L+ +L ++ +++ +
Sbjct: 50 RDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLV 109
Query: 507 NIMIDVGSALEYLR-----HGHSSAPIIHCEG---------------EDSVTQTTTMATI 546
++ + + ++YL H +A I ED + T +++
Sbjct: 110 GMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSL 169
Query: 547 G------YMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKES 599
G + APE + ++ DV+SYG+++ E + +RP +M ++
Sbjct: 170 GGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDV--------- 220
Query: 600 LPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
N + ++ MDC ++ L LDC + + R + L K+
Sbjct: 221 ----------INAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM 268
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269 |
| >gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 36/161 (22%)
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKA--LVLEFMPNGSLEKWLYSHNYFLDILER 505
+ E +L+ + H N++K CS K L++E++P GSL +L H L++ +
Sbjct: 52 GWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHK--LNLAQL 109
Query: 506 LNIMIDVGSALEYLRHGHSSAPIIHCE--GEDSVTQTTTMATIG---------------- 547
L + + YL H IH + + + + IG
Sbjct: 110 LLFAQQICEGMAYLHSQH----YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR 165
Query: 548 ----------YMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578
+ A E E S DV+S+GV L E T
Sbjct: 166 VREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTH 206
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283 |
| >gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 6e-04
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 50/187 (26%)
Query: 434 NKLSSSIPSSLAF------RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPN 486
K++++I F R F E EVL + H N+I ++ +C N + + +E+ P
Sbjct: 28 LKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPY 87
Query: 487 GSLEKWLYSHNYF---------------LDILERLNIMIDVGSALEYLRHGHSSAPIIH- 530
G+L +L L + L DV + ++YL S IH
Sbjct: 88 GNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYL----SEKQFIHR 143
Query: 531 ----------------------CEGEDS-VTQTTTMATIGYMAPEYGSEGIVSAKCDVYS 567
GE+ V +T + +MA E + + + K DV+S
Sbjct: 144 DLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWS 203
Query: 568 YGVLLME 574
+GVLL E
Sbjct: 204 FGVLLWE 210
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297 |
| >gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 30/159 (18%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLN 507
F E ++R H +++K+I + NP + +V+E P G L +L + Y LD+ +
Sbjct: 54 FLQEAYIMRQFDHPHIVKLIGVITENPVW--IVMELAPLGELRSYLQVNKYSLDLASLIL 111
Query: 508 IMIDVGSALEYL------------RHGHSSAPIIHC------------EGEDSVTQTTTM 543
+ +AL YL R+ S+P C E E +
Sbjct: 112 YSYQLSTALAYLESKRFVHRDIAARNVLVSSP--DCVKLGDFGLSRYLEDESYYKASKGK 169
Query: 544 ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRP 581
I +MAPE + ++ DV+ +GV + E +P
Sbjct: 170 LPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKP 208
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270 |
| >gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 46/190 (24%)
Query: 429 LHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKII------SSCSNPDFKALVLE 482
L + + I + F SE +++ H N++K+I SS ++L
Sbjct: 28 LKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILP 87
Query: 483 FMPNGSLEKWLYSHN-----YFLDILERLNIMIDVGSALEYLRHGHSSAPIIH------- 530
FM +G L +L L + L M+D+ +EYL S+ IH
Sbjct: 88 FMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYL----SNRNFIHRDLAARN 143
Query: 531 CEGEDSVTQTTTMATIG----------------------YMAPEYGSEGIVSAKCDVYSY 568
C + + T +A G ++A E ++ + ++K DV+++
Sbjct: 144 CMLREDM--TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAF 201
Query: 569 GVLLMETFTR 578
GV + E TR
Sbjct: 202 GVTMWEIATR 211
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273 |
| >gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 26/156 (16%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL--DILERL 506
F E +V+ + H L+++ C+ +V EFM NG L +L L D+L L
Sbjct: 46 FIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDML--L 103
Query: 507 NIMIDVGSALEYLRHG---HSSAPIIHCEGEDS-------------------VTQTTTMA 544
++ DV +EYL H +C + + +
Sbjct: 104 SMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKF 163
Query: 545 TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580
+ + PE + S+K DV+S+GVL+ E FT +
Sbjct: 164 PVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGK 199
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256 |
| >gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 77/243 (31%)
Query: 451 SECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-------NYFLDI 502
SE E+++ + +H+N+I ++ C+ +V+E+ +G+L +L + +
Sbjct: 64 SEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPR 123
Query: 503 LERLNIMI--------DVGSALEYLRHGHSSAPIIHCE--------GEDSVTQ------- 539
+ V +E+L +S IH + ED V +
Sbjct: 124 PPEETLTQKDLVSFAYQVARGMEFL----ASKKCIHRDLAARNVLVTEDHVMKIADFGLA 179
Query: 540 ------------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR------P 581
T + +MAPE + + + + DV+S+GVLL E FT P
Sbjct: 180 RDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP 239
Query: 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641
+E+F L++E +C + L DC E P
Sbjct: 240 VEELF------------------------KLLKEGYRMEKPQNCTQELYHLMRDCWHEVP 275
Query: 642 DKR 644
+R
Sbjct: 276 SQR 278
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293 |
| >gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 31/221 (14%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL 500
P +++ ++F E +++ ++H L+++ + + + ++ E+M GSL +L S
Sbjct: 40 PGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGK 99
Query: 501 DILERL---NIMIDVGSAL----EYLRHGHSSAPIIHCEG--------------EDSVTQ 539
+L +L + I G A Y+ +A ++ E ED+
Sbjct: 100 VLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYT 159
Query: 540 TTTMAT--IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEM--SLRR 594
A I + APE + G + K DV+S+G+LL E T K P M ++ +L+R
Sbjct: 160 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQR 219
Query: 595 WVK----ESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMD 631
+ E+ P L +++ T +E+ D L S++D
Sbjct: 220 GYRMPRMENCPDELYDIMKT-CWKEKAEERPTFDYLQSVLD 259
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261 |
| >gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 41/203 (20%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYS---- 495
P S++ +F +E V++ ++H L+K+ + + P + ++ EFM GSL +L S
Sbjct: 40 PGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIY--IITEFMAKGSLLDFLKSDEGS 97
Query: 496 -----------------------HNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE 532
NY L NI++ + G A +I E
Sbjct: 98 KQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFG--LARVI--E 153
Query: 533 GEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR-PTDEMFTGEM- 590
+ + I + APE + G + K DV+S+G+LLME T R P M E+
Sbjct: 154 DNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVI 213
Query: 591 -SLRRWVK----ESLPHRLSEVV 608
+L R + E+ P L ++
Sbjct: 214 RALERGYRMPRPENCPEELYNIM 236
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260 |
| >gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 25/190 (13%)
Query: 419 CLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKA 478
CL L S REL + + L + S R F +E L H N++++ + +
Sbjct: 25 CL-KLPSKRELPVAIHTLRAGC-SDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMM 82
Query: 479 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR---HGHSSAPIIH----- 530
+V E+M NG+L+ +L H L + + ++ + S ++YL + H
Sbjct: 83 IVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNS 142
Query: 531 ---CE-------GEDSV-TQTTTM---ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576
C+ ED TTM + + + APE S+ DV+S+G+++ E
Sbjct: 143 DLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVM 202
Query: 577 TR-KRPTDEM 585
+ +RP +M
Sbjct: 203 SYGERPYWDM 212
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266 |
| >gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 44/168 (26%)
Query: 447 RSFDSECEVL-RNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF------ 499
R F E EVL + H N+I ++ +C + + L +E+ P+G+L +L
Sbjct: 52 RDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAF 111
Query: 500 ---------LDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSVTQTTT 542
L + L+ DV ++YL S IH + GE+ V +
Sbjct: 112 AIANSTASTLSSQQLLHFAADVARGMDYL----SQKQFIHRDLAARNILVGENYVAKIAD 167
Query: 543 MA-----------TIG-----YMAPEYGSEGIVSAKCDVYSYGVLLME 574
T+G +MA E + + + DV+SYGVLL E
Sbjct: 168 FGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWE 215
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303 |
| >gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 37/158 (23%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLN---- 507
E +L+ + H L+ + S + + LV++ + G L Y L + +
Sbjct: 50 ERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLR-------YHLSQKVKFSEEQV 102
Query: 508 --IMIDVGSALEYLR------------------HGHSSAPI----IHCEGEDSVTQTTTM 543
+ ++ ALEYL GH I I + T+T
Sbjct: 103 KFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGH--VHITDFNIATKVTPDTLTTSTS 160
Query: 544 ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
T GYMAPE S D +S GV E KRP
Sbjct: 161 GTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRP 198
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258 |
| >gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSHN-Y 498
P ++ +F E ++++ +RH L+ + + S P + +V EFM GSL +L +
Sbjct: 40 PGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIY--IVTEFMGKGSLLDFLKEGDGK 97
Query: 499 FLDILERLNIMIDVGSALEYLRHGH------SSAPIIHCEG--------------EDSVT 538
+L + + +++ + + Y+ + +A I+ + ED+
Sbjct: 98 YLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEY 157
Query: 539 QTTTMAT--IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580
A I + APE G + K DV+S+G+LL E T+ R
Sbjct: 158 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 201
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260 |
| >gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 34/160 (21%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---YFLDILERLNI 508
E VL + +I+ S + +V+E+ NG L K L D + R I
Sbjct: 49 EARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFI 108
Query: 509 MIDVGSALEYLRHGHSSAPIIHCE-------------------------GEDSVTQTTTM 543
I +G L H HS I+H + +++ T +
Sbjct: 109 QILLG-----LAHLHSKK-ILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIV 162
Query: 544 ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583
T Y++PE + + K DV++ GV+L E T K P D
Sbjct: 163 GTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFD 202
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256 |
| >gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 32/167 (19%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSHNYF 499
S++ +F +E +++ ++H L+++ + + P + ++ E+M NGSL +L +
Sbjct: 40 QGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIY--IITEYMENGSLVDFLKTPE-- 95
Query: 500 LDILERLNIMIDVGSAL----------EYLRHGHSSAPII-----HC-----------EG 533
I +N +ID+ + + Y+ +A I+ C E
Sbjct: 96 -GIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIED 154
Query: 534 EDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580
+ + I + APE + G + K DV+S+G+LL E T R
Sbjct: 155 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGR 201
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 669 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 100.0 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.98 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.97 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.96 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.95 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.95 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.95 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.95 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.95 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.94 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.94 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.94 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.94 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.94 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.94 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.94 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.93 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.93 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.93 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.93 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.93 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.92 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.92 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.92 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 99.92 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.92 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.92 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.92 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.92 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.92 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.92 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.92 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.92 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.92 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.92 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.91 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 99.91 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.91 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.91 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.91 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.91 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.91 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.91 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.91 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.91 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.91 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.91 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.91 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.91 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.91 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.91 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.9 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.9 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.9 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.9 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.9 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.9 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.9 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.9 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.9 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.9 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.9 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.9 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.9 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.9 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.9 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.9 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.9 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.9 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.9 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.9 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.9 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 99.9 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.9 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.9 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.9 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.9 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.9 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.9 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.9 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.9 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.9 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.9 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.9 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.9 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.9 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.9 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.89 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.89 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.89 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.89 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.89 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.89 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.89 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.89 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.89 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.89 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.89 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.89 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.89 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.89 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.89 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.89 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.89 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.89 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.89 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.89 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.89 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.89 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.89 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.89 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.89 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.89 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.89 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.89 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.89 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.89 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.89 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.89 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.89 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.89 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.88 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.88 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.88 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.88 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.88 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.88 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.88 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.88 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.88 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.88 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.88 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.88 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.88 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.88 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.88 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.88 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.88 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.88 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.88 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.88 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.88 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.88 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.88 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.88 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.88 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.88 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.88 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.88 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.88 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 99.88 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.88 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.88 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.88 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.88 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.88 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.88 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.88 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.88 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.87 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.87 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.87 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.87 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.87 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.87 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.87 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.87 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.87 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.87 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.87 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.87 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.87 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.87 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.87 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 99.87 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.87 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.87 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.87 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.87 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.87 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.87 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.87 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.87 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.87 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 99.87 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.87 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.87 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.87 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.87 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.87 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.87 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.87 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.87 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.87 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.87 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.87 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.87 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.87 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.87 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.87 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.87 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.87 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.87 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.87 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.86 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.86 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.86 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.86 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.86 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.86 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.86 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.86 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.86 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.86 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.86 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.86 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.86 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.86 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.86 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.86 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.86 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.86 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.86 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.86 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.86 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.86 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.86 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.86 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.86 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.86 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.86 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.86 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.86 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.86 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.86 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.85 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 99.85 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.85 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.85 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.85 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.85 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.85 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.85 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.85 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.85 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 99.85 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.85 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.85 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 99.85 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 99.85 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.85 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.85 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.85 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.85 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.85 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.85 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.85 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.85 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.85 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.85 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.85 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.85 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.85 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.85 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 99.85 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.85 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.84 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 99.84 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 99.84 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 99.84 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 99.84 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 99.84 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.84 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.84 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.84 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.84 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 99.84 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.84 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.84 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.84 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.84 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.84 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.84 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.84 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.84 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.84 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.84 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 99.84 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 99.84 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.84 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 99.84 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.84 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.84 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.84 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.83 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 99.83 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.83 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 99.83 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 99.83 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 99.83 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.83 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.83 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 99.83 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 99.83 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.83 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.83 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.83 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.83 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.82 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 99.82 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 99.82 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.82 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.82 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.82 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.82 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 99.82 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 99.82 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 99.82 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.82 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.82 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 99.82 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.82 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 99.81 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.81 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.81 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.81 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 99.81 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.81 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 99.8 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 99.8 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 99.8 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 99.8 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 99.8 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 99.8 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.8 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 99.8 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 99.8 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.8 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.8 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.79 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.79 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 99.79 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 99.79 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 99.79 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 99.79 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 99.78 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.78 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 99.78 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 99.78 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 99.77 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 99.77 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 99.76 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.76 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.75 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.74 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 99.74 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 99.74 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 99.74 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.73 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 99.73 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 99.72 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 99.71 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 99.7 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.7 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 99.69 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 99.69 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 99.68 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 99.67 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 99.67 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 99.66 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 99.64 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 99.64 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 99.64 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.63 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 99.62 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 99.59 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 99.54 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 99.54 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 99.53 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 99.51 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 99.48 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 99.48 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 99.43 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 99.42 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 99.38 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.37 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 99.3 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.29 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.25 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.21 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.19 | |
| KOG1033 | 516 | consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati | 99.18 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 99.02 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 99.02 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.01 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.01 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.88 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.87 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.87 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.86 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.85 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 98.84 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.83 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.82 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.81 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.8 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.79 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.73 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.72 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.66 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.65 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 98.63 | |
| PF14531 | 288 | Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_ | 98.54 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 98.54 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 98.33 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 98.27 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.26 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.12 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.12 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 98.11 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 98.07 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.02 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.96 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 97.84 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.81 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.8 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.79 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.77 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.69 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.67 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 97.65 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.52 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.51 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.43 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.42 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 97.41 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 97.41 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 97.38 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 97.34 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.33 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 97.32 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 97.29 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 97.23 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 97.23 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.22 | |
| KOG0601 | 524 | consensus Cyclin-dependent kinase WEE1 [Cell cycle | 97.21 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.16 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 96.68 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.66 | |
| COG4248 | 637 | Uncharacterized protein with protein kinase and he | 96.48 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.46 | |
| smart00090 | 237 | RIO RIO-like kinase. | 96.44 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 96.44 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.43 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-78 Score=709.13 Aligned_cols=643 Identities=31% Similarity=0.520 Sum_probs=432.8
Q ss_pred ChhhHHHHHHHHhhcCCCcccccCCCCCCCCCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCc
Q 040540 7 LTTDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENN 86 (669)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~l~~~w~~~~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~ 86 (669)
...|+.||++||+++.++.+.+.+ |+...++|.|.|++|.. .++|+.|||++++++|.++..|..+++|++|+|++|.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 457899999999999777766654 98777899999999975 3589999999999888888888888888888888888
Q ss_pred CcccCCcccC-CCCCCCEEEccCCcCC----------------------ccCCccccCCcccccccccccCccccCCccc
Q 040540 87 FHGHLPKELG-QLRRLRVMSLAYNKLS----------------------GSFPSWIGVLSKLRILRLDYNNFTGPIPNSL 143 (669)
Q Consensus 87 l~~~~p~~l~-~l~~L~~L~L~~n~l~----------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 143 (669)
+.+.+|..+. .+++|++|+|++|.+. +.+|..++++++|++|+|++|.+++.+|..+
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 8877776543 5556666655555544 4455556666666666666666666666666
Q ss_pred CCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcE
Q 040540 144 FNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRI 223 (669)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 223 (669)
+++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+.++++|+.
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 66666666666666666666666666666666666666666666666666666666666666666555666666666666
Q ss_pred EEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCcccc---------------
Q 040540 224 LTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTF--------------- 288 (669)
Q Consensus 224 L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~--------------- 288 (669)
|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+.++++|+.|++++|.+.+.+|..+
T Consensus 265 L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred EECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 66666655555555544 35555555555555555555544444455555544444444444444
Q ss_pred ---------CCCCCCCEEEccCCccccCCCCC--------------cc--cccccccCCCCCCCEEECcCCCCccccchh
Q 040540 289 ---------GNLRHLSVLNVMMNNLTTESSSA--------------DQ--WSFLSSLTNCRNLSNLALASNPLGGILPQL 343 (669)
Q Consensus 289 ---------~~l~~L~~L~l~~N~l~~~~~~~--------------~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 343 (669)
..+++|+.|+++.|++.+..... +. ......+..+++|+.|++++|.+.+..|..
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 44444444444444443211000 00 000011122233333333333332222211
Q ss_pred Hhhh-------------------------------------------------------------------hccccccce
Q 040540 344 IGNF-------------------------------------------------------------------SASLQNIYA 356 (669)
Q Consensus 344 ~~~~-------------------------------------------------------------------~~~l~~l~~ 356 (669)
+... ...+..|..
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 503 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCE
Confidence 1000 011334455
Q ss_pred EeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcc
Q 040540 357 FELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436 (669)
Q Consensus 357 l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l 436 (669)
+++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+.+|+.+++++|++
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 55666666666666667777777777777777777777777788888888888888888888888888888888888888
Q ss_pred eecCCcccc-------------------------------------------------------------------cc--
Q 040540 437 SSSIPSSLA-------------------------------------------------------------------FR-- 447 (669)
Q Consensus 437 ~~~~p~~~~-------------------------------------------------------------------~~-- 447 (669)
.+.+|.... .+
T Consensus 584 ~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (968)
T PLN00113 584 HGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRV 663 (968)
T ss_pred eeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 765542100 00
Q ss_pred -----------------------------------------------------------------cCchhhhhhcccccc
Q 040540 448 -----------------------------------------------------------------SFDSECEVLRNVRHR 462 (669)
Q Consensus 448 -----------------------------------------------------------------~~~~e~~~l~~l~h~ 462 (669)
....|+..+++++||
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~l~~l~Hp 743 (968)
T PLN00113 664 ENEDGTWELQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHP 743 (968)
T ss_pred ccccccccccccccccchhhhHHHHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccccHHHHHHHhhCCCC
Confidence 001235556778899
Q ss_pred ccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc-----
Q 040540 463 NLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV----- 537 (669)
Q Consensus 463 niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~----- 537 (669)
|+++++++|......++|||||++|+|.++++. ++|.++.+|+.|+++|++|+|+. +.++++|||+|+..
T Consensus 744 nIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~L~yLH~~-~~~~iiH~dlkp~Nil~~~ 818 (968)
T PLN00113 744 NIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN----LSWERRRKIAIGIAKALRFLHCR-CSPAVVVGNLSPEKIIIDG 818 (968)
T ss_pred CcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc----CCHHHHHHHHHHHHHHHHHhccC-CCCCeecCCCCHHhEEECC
Confidence 999999999998899999999999999999963 79999999999999999999965 46799999999541
Q ss_pred ---------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCC
Q 040540 538 ---------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH 602 (669)
Q Consensus 538 ---------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~ 602 (669)
......||++|||||+..+..++.|+|||||||++|||+||+.||+........+.+|++.....
T Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 898 (968)
T PLN00113 819 KDEPHLRLSLPGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSD 898 (968)
T ss_pred CCceEEEeccccccccCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCc
Confidence 01122467899999999988899999999999999999999999976555556788888765433
Q ss_pred -CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 603 -RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 603 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
.....+|+.+... .+...++..++.+++.+||+.||++||+|+||+++|+++.+.
T Consensus 899 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~ 954 (968)
T PLN00113 899 CHLDMWIDPSIRGD---VSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRS 954 (968)
T ss_pred cchhheeCccccCC---CCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhcc
Confidence 2334455554322 112345667889999999999999999999999999998664
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=380.67 Aligned_cols=364 Identities=33% Similarity=0.539 Sum_probs=267.1
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+.+.+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|+|
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 46788888888888888888888888888888888888888888888888888888888888788888888888888888
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.+++.+|..+.++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 88888888888888888888888888888877887777888888888888887777777777777777777777777777
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
+|..+..+++|+.|++++|.+++.+|..+. .+.+|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..|..
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 777777777777777777777666666554 3445555555555555444444444444444444444444444444444
Q ss_pred ------------------------CCCCCEEEccCCccccCCCCC-------------ccc--ccccccCCCCCCCEEEC
Q 040540 291 ------------------------LRHLSVLNVMMNNLTTESSSA-------------DQW--SFLSSLTNCRNLSNLAL 331 (669)
Q Consensus 291 ------------------------l~~L~~L~l~~N~l~~~~~~~-------------~~~--~~~~~l~~l~~L~~L~l 331 (669)
+++|+.|++++|++.+..... +.. .....+..+++|+.|++
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 506 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEEC
Confidence 444444444444433211000 000 01122345566677777
Q ss_pred cCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCc
Q 040540 332 ASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNK 411 (669)
Q Consensus 332 ~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~ 411 (669)
++|.+.+.+|..+. .+.+|+.+++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+..|+.+++++|.
T Consensus 507 s~N~l~~~~p~~~~----~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 507 SENKLSGEIPDELS----SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred cCCcceeeCChHHc----CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 77777766665543 36789999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeCccc
Q 040540 412 LSGHIPPC 419 (669)
Q Consensus 412 l~~~~p~~ 419 (669)
+.+.+|..
T Consensus 583 l~~~~p~~ 590 (968)
T PLN00113 583 LHGSLPST 590 (968)
T ss_pred ceeeCCCc
Confidence 99988853
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=309.28 Aligned_cols=208 Identities=39% Similarity=0.631 Sum_probs=178.2
Q ss_pred cccCchhhhhhccccccccceecccccccc-ccceeeccCCCCChHHhhhcCCC-ccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.++|..|+.++.+++|+|+|+++|+|...+ ...||||||++|+|.++|+.... +++|..|++|++++|+||+|||+.
T Consensus 115 ~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~- 193 (361)
T KOG1187|consen 115 EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEG- 193 (361)
T ss_pred hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccC-
Confidence 456999999999999999999999999888 49999999999999999997655 899999999999999999999987
Q ss_pred CCCCeeecCCCCcc---------------------c-cc---cc-ccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 524 SSAPIIHCEGEDSV---------------------T-QT---TT-MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 524 ~~~~i~h~d~~~~~---------------------~-~~---~~-~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
+.++|||||+|++. . .. +. .||.+|+|||++..+..+.|+|||||||+++|++|
T Consensus 194 ~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElit 273 (361)
T KOG1187|consen 194 CPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELIT 273 (361)
T ss_pred CCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHh
Confidence 67899999999430 0 11 11 69999999999999999999999999999999999
Q ss_pred CCCCCCcCC-CCCccHHHHHHHhCCC-CccccccccccchhhhhhhhH-HHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 578 RKRPTDEMF-TGEMSLRRWVKESLPH-RLSEVVDTNLVREEQAFSAKM-DCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 578 g~~p~~~~~-~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
|+.|.+... .+...+.+|++..... .+.+++|+.+.... ... ++..++..++.+|++.+|.+||+|.||+++|
T Consensus 274 gr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~----~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L 349 (361)
T KOG1187|consen 274 GRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGE----YPDEKEVKKLAELALRCLRPDPKERPTMSQVVKEL 349 (361)
T ss_pred CCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCC----CChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHH
Confidence 999887643 4455689998777755 58899999987321 122 6788899999999999999999999999999
Q ss_pred HHhH
Q 040540 655 KKIK 658 (669)
Q Consensus 655 ~~~~ 658 (669)
+.+.
T Consensus 350 ~~~~ 353 (361)
T KOG1187|consen 350 EGIL 353 (361)
T ss_pred Hhhc
Confidence 6654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=305.99 Aligned_cols=368 Identities=22% Similarity=0.262 Sum_probs=311.4
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
.++.||+++|.++.+-+..|.++++|+.+++..|.++ .+|...+...+|+.|+|.+|.|+..-.+++..++.|+.||||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4678999999999888888899999999999999887 678766677789999999999987777888889999999999
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
.|.++...-.+|..=.++++|+|++|.++..-.+.|.++.+|.+|.|+.|+++..++..|.+|++|+.|+|..|.+.-..
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 99998665567777788999999999999888889999999999999999999888888888999999999999987655
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
-..|..+.+|+.|.+..|.++ .+.+..+..+.++++|+|+.|+++..-..++.++++|+.|++|+|.+..+-++++...
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 667888999999999999987 6777777788999999999999988778888999999999999999988888888888
Q ss_pred CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCc-
Q 040540 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT- 370 (669)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~- 370 (669)
++|+.|+|+.|+++..+. .++..++.|+.|+|++|.+...-... +..+.+|..|||+.|.++..+..
T Consensus 317 qkL~~LdLs~N~i~~l~~--------~sf~~L~~Le~LnLs~Nsi~~l~e~a----f~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDE--------GSFRVLSQLEELNLSHNSIDHLAEGA----FVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred ccceeEeccccccccCCh--------hHHHHHHHhhhhcccccchHHHHhhH----HHHhhhhhhhcCcCCeEEEEEecc
Confidence 999999999999887653 34666788899999999887543322 34577888999999998876654
Q ss_pred --cccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCC
Q 040540 371 --SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSN 434 (669)
Q Consensus 371 --~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N 434 (669)
.|..++.|+.|++.+|++..+....|.++..|+.|||.+|.+...-|.+|..+ .|++|.+..-
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 46778888999999999988777889999999999999999988888888887 8888776553
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=292.49 Aligned_cols=378 Identities=21% Similarity=0.227 Sum_probs=325.6
Q ss_pred CCEEEEEcCCCCCcccccccccC-C-CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGN-L-SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~-l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 128 (669)
.....||.+++.+...--..+.. + +.-++||+++|.++.+.+..|.++++|+.+++.+|.+. .+|...+...+|+.|
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL 130 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence 34577888888776432111111 1 34567999999999999999999999999999999998 789877777889999
Q ss_pred cccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC
Q 040540 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 129 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 208 (669)
+|.+|.++..-..++..++.|+.|||+.|.++...-.+|..=.++++|+|++|+++..--..|..+.+|..|.|++|.++
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 99999999888888999999999999999999777777888889999999999999888889999999999999999999
Q ss_pred CCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCcccc
Q 040540 209 GLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTF 288 (669)
Q Consensus 209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~ 288 (669)
...+..|++++.|+.|+|..|++. .+.-..+.++++|+.|.|..|++...-...|..+.++..|+|+.|++...-..++
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred ccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 988888889999999999999985 3323345589999999999999998888889999999999999999997777889
Q ss_pred CCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCC
Q 040540 289 GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI 368 (669)
Q Consensus 289 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~ 368 (669)
.+++.|+.|++++|.+..+. .+ ....+++|+.|+|++|.+....+..+.. +..|+.|+|++|.+....
T Consensus 290 fgLt~L~~L~lS~NaI~rih--~d------~WsftqkL~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIH--ID------SWSFTQKLKELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLA 357 (873)
T ss_pred cccchhhhhccchhhhheee--cc------hhhhcccceeEeccccccccCChhHHHH----HHHhhhhcccccchHHHH
Confidence 99999999999999987763 22 3445789999999999999887776654 677899999999999887
Q ss_pred CccccccCCCcEEecCCCcccccCch---hhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCc
Q 040540 369 PTSIGTLQQLQGFYVPENNLQGYVPH---DLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPS 442 (669)
Q Consensus 369 ~~~~~~l~~L~~l~l~~n~~~~~~p~---~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 442 (669)
...|..+++|+.|++..|.+...+-+ .|.++++|+.|.+.+|++......+|.++.+|++|+|.+|.+.+.-|.
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 88899999999999999999887643 477899999999999999876667999999999999999999865443
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=289.40 Aligned_cols=197 Identities=26% Similarity=0.452 Sum_probs=160.3
Q ss_pred cccCchhhhhhccccccccceecccccccc-ccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+.|..|+.++.+++|||||+++|+|..+. ..++|||||++|+|.+++++ .+..+++..+++++.|||+|+.|||..
T Consensus 83 ~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~- 161 (362)
T KOG0192|consen 83 RKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE- 161 (362)
T ss_pred HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 457889999999999999999999999887 68899999999999999987 467899999999999999999999964
Q ss_pred CCCCeeecCCCCc--------------------------ccccccccccccCcccccc--CCCcCccccchhhHHHHHHH
Q 040540 524 SSAPIIHCEGEDS--------------------------VTQTTTMATIGYMAPEYGS--EGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 524 ~~~~i~h~d~~~~--------------------------~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~s~Gvil~el 575 (669)
.+ |||||+|+. ...+...||+.|||||++. ...|+.|+|||||||++|||
T Consensus 162 -~~-iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl 239 (362)
T KOG0192|consen 162 -GP-IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWEL 239 (362)
T ss_pred -CC-eeecccChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHH
Confidence 22 999999943 0112246999999999999 56899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+||+.||..... ..+...+...... +. .+..+...+..++.+||..||++||++.+++..|+
T Consensus 240 ~t~~~Pf~~~~~--~~~~~~v~~~~~R-------p~---------~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~ 301 (362)
T KOG0192|consen 240 LTGEIPFEDLAP--VQVASAVVVGGLR-------PP---------IPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLE 301 (362)
T ss_pred HHCCCCCCCCCH--HHHHHHHHhcCCC-------CC---------CCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHH
Confidence 999999987543 2233332211100 11 12235567789999999999999999999999999
Q ss_pred HhHHHhhh
Q 040540 656 KIKVKFLD 663 (669)
Q Consensus 656 ~~~~~~~~ 663 (669)
.+......
T Consensus 302 ~~~~~~~~ 309 (362)
T KOG0192|consen 302 SIMSHISS 309 (362)
T ss_pred HHHHhhcc
Confidence 99877643
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.6e-33 Score=266.28 Aligned_cols=186 Identities=22% Similarity=0.225 Sum_probs=153.0
Q ss_pred cccCchhhhhhccccccccceecccccccc-ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+++.+|+++++.++||+||+++|+|..+. .+.|+||||++|+|.++++.. ..+++....+|+.+|.+||.|||+.
T Consensus 121 ~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k~~-g~i~E~~L~~ia~~VL~GL~YLh~~-- 197 (364)
T KOG0581|consen 121 QKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILKRV-GRIPEPVLGKIARAVLRGLSYLHEE-- 197 (364)
T ss_pred HHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhhc--
Confidence 356778999999999999999999999988 599999999999999999854 4588899999999999999999953
Q ss_pred CCCeeecCCCCc-----------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 525 SAPIIHCEGEDS-----------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 525 ~~~i~h~d~~~~-----------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+.|||||+|++ ....+++||..|||||.+.+..|+.++||||||++++|+++|+.|
T Consensus 198 -~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP 276 (364)
T KOG0581|consen 198 -RKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFP 276 (364)
T ss_pred -cCeeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCC
Confidence 58999999964 124567899999999999999999999999999999999999999
Q ss_pred CCcCCC---CCccHHHHHHHhCCCCccccccccccchhhhhhhhH-HHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFT---GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKM-DCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..... +...+..++-...|++ . +. .+++++.+++.+|+++||.+||++.|+++
T Consensus 277 ~~~~~~~~~~~~~Ll~~Iv~~ppP~---------------l--P~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~ 334 (364)
T KOG0581|consen 277 YPPPNPPYLDIFELLCAIVDEPPPR---------------L--PEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQ 334 (364)
T ss_pred CCCcCCCCCCHHHHHHHHhcCCCCC---------------C--CcccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 976422 2222333322222211 1 22 36778899999999999999999999876
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-33 Score=283.70 Aligned_cols=360 Identities=28% Similarity=0.439 Sum_probs=310.8
Q ss_pred CCEEEEEcCCCCCc-ccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 51 QRVTALNLSDMGLG-GTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 51 ~~v~~L~ls~~~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
.-|+..|+++|.++ +..|.+...|+.++-|-|....+. .+|++++.+.+|++|.+++|++. .+-..+..|+.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 34788999999999 567888999999999999998886 79999999999999999999987 5667788999999999
Q ss_pred ccccCccc-cCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC
Q 040540 130 LDYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 130 L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 208 (669)
+..|++.. -+|..++.|..|..|+++.|++. +.|..+..-+++.+|+||+|++..++-..|.+|+.|-+||||+|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 99999874 48899999999999999999997 78889999999999999999998666667789999999999999998
Q ss_pred CCCCccccCCCCCcEEEcccCCCcc----ccchhhhccCCCCCeeecccCccc-ccCCccccCCCCCCEEeCCCCCcccc
Q 040540 209 GLIPPTIFNISTMRILTLESNQLSG----RLPSTIGHSLRNIEYLALSTNNLI-GKIPNSITNATKLIGLDLGFNSFSGH 283 (669)
Q Consensus 209 ~~~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~~l~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~ 283 (669)
. +|+.+..+.+|++|.|++|.+.- ++| .|.+|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .
T Consensus 164 ~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-----smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 164 M-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-----SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred h-cCHHHHHHhhhhhhhcCCChhhHHHHhcCc-----cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence 5 57778999999999999998741 233 4778888999887643 457889999999999999999998 7
Q ss_pred CccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcc
Q 040540 284 IPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFND 363 (669)
Q Consensus 284 ~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~ 363 (669)
+|..+.++++|+.|+|+.|+++....... .+.+|++|+++.|+++. +|..++. ++.|..|....|+
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~~---------~W~~lEtLNlSrNQLt~-LP~avcK----L~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTEG---------EWENLETLNLSRNQLTV-LPDAVCK----LTKLTKLYANNNK 302 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccHH---------HHhhhhhhccccchhcc-chHHHhh----hHHHHHHHhccCc
Confidence 89999999999999999999988754433 34678999999999984 5665554 5566666777787
Q ss_pred cCC-CCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcc
Q 040540 364 LNG-TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436 (669)
Q Consensus 364 l~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l 436 (669)
+.- -+|..++.+.+|+.+...+|.+. .+|..++.+..|+.|.|++|++. .+|+++.-++.|..|++..|.-
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 753 47889999999999999988876 78999999999999999999997 6899999999999999988753
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-34 Score=275.30 Aligned_cols=371 Identities=30% Similarity=0.452 Sum_probs=285.1
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..+++|++++|.+. .+|++++.+..++.|+.++|+++ .+|.+++.+..|+.|+.++|.+. .+|+.++.+..|+.|+.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 34678888888886 66777888888888888888887 67888888888888888888887 67778888888888888
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
.+|+++ ..|+.++++.+|..+++.+|.+....|..+. ++.|++|+..+|-+. .+|..++.+.+|.-|++..|++. .
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 888887 6788888888888888888888755555444 888999998888875 77888999999999999999998 4
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
+| +|..++.|..+.++.|++. .+|......++.+..||+.+|+++ +.|+.+.-+.+|..||+|+|.+++ .|.++++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn 296 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGN 296 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence 55 8888999999999999986 889988888999999999999986 789999999999999999999984 6778899
Q ss_pred CCCCCEEEccCCccccCCC------------------------CC----------cccccccccCCCCC-----------
Q 040540 291 LRHLSVLNVMMNNLTTESS------------------------SA----------DQWSFLSSLTNCRN----------- 325 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~------------------------~~----------~~~~~~~~l~~l~~----------- 325 (669)
+ .|++|-+.+|.++.+.. .. ..+.+. ......+
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQL 374 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhccccccc
Confidence 9 99999999997653210 00 001000 0001111
Q ss_pred ---------------CCEEECcCCCCccccchh--------------------HhhhhccccccceEeecCcccCCCCCc
Q 040540 326 ---------------LSNLALASNPLGGILPQL--------------------IGNFSASLQNIYAFELGFNDLNGTIPT 370 (669)
Q Consensus 326 ---------------L~~L~l~~n~l~~~~~~~--------------------~~~~~~~l~~l~~l~l~~n~l~~~~~~ 370 (669)
.+..+++.|++... |.. +...-..++++..+++++|-+. .+|.
T Consensus 375 t~VPdEVfea~~~~~Vt~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 375 TLVPDEVFEAAKSEIVTSVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred ccCCHHHHHHhhhcceEEEecccchHhhh-hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence 23445555554422 111 1111234678888899887766 6788
Q ss_pred cccccCCCcEEecCCCcccc-----------------------cCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCC
Q 040540 371 SIGTLQQLQGFYVPENNLQG-----------------------YVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLR 427 (669)
Q Consensus 371 ~~~~l~~L~~l~l~~n~~~~-----------------------~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 427 (669)
.++.+..|+.++++.|+|.. ..|..+.++.+|.+||+.+|.+. .+|+.++++++|+
T Consensus 453 e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR 531 (565)
T ss_pred hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence 88888889999998887652 23344677888999999999987 6788899999999
Q ss_pred EEECCCCcce
Q 040540 428 ELHLGSNKLS 437 (669)
Q Consensus 428 ~L~l~~N~l~ 437 (669)
+|.+.+|+|.
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 9999999987
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=267.73 Aligned_cols=194 Identities=25% Similarity=0.423 Sum_probs=159.7
Q ss_pred cccccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 444 LAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 444 ~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+...+|.+|+.+|.+++|+++|++++.|..+..++||||||+.|+|.++|+. .+..+...+.+.++.|||+|++||.
T Consensus 243 m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLe-- 320 (468)
T KOG0197|consen 243 MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLE-- 320 (468)
T ss_pred cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHH--
Confidence 3446788999999999999999999999998889999999999999999996 5667889999999999999999997
Q ss_pred CCCCCeeecCCCCc-----------------------cccccc---ccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 523 HSSAPIIHCEGEDS-----------------------VTQTTT---MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 523 ~~~~~i~h~d~~~~-----------------------~~~~~~---~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+..+||||+..- ...+.. .--..|.|||.+..++++.|+|||||||+||||+
T Consensus 321 --s~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~f 398 (468)
T KOG0197|consen 321 --SKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELF 398 (468)
T ss_pred --hCCccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHh
Confidence 568999997621 000011 1235799999999999999999999999999999
Q ss_pred h-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 T-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
| |+.||..+... .+.+.+ ..+.|++.|+.|++.+.++|..||..+|++|||++.....++
T Consensus 399 T~G~~py~~msn~--ev~~~l-----------------e~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~ 459 (468)
T KOG0197|consen 399 TYGRVPYPGMSNE--EVLELL-----------------ERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLE 459 (468)
T ss_pred ccCCCCCCCCCHH--HHHHHH-----------------hccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHH
Confidence 9 89998765321 122222 223556778889999999999999999999999999988888
Q ss_pred HhHHH
Q 040540 656 KIKVK 660 (669)
Q Consensus 656 ~~~~~ 660 (669)
++...
T Consensus 460 ~~~~~ 464 (468)
T KOG0197|consen 460 DFFTS 464 (468)
T ss_pred Hhhhc
Confidence 87543
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-30 Score=258.26 Aligned_cols=188 Identities=22% Similarity=0.355 Sum_probs=150.3
Q ss_pred hhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeee
Q 040540 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH 530 (669)
Q Consensus 451 ~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h 530 (669)
.++.-+++++|+||+.+.|.|......+||||||+.|.|+++|+.. ..+.-...+....+||.|+.|||. ..|||
T Consensus 161 TdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~-~~itp~llv~Wsk~IA~GM~YLH~----hKIIH 235 (904)
T KOG4721|consen 161 TDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAG-RPITPSLLVDWSKGIAGGMNYLHL----HKIIH 235 (904)
T ss_pred hhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhcc-CccCHHHHHHHHHHhhhhhHHHHH----hhHhh
Confidence 3677899999999999999999888889999999999999999864 455656667888999999999994 47999
Q ss_pred cCCCCc------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCC
Q 040540 531 CEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMF 586 (669)
Q Consensus 531 ~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~ 586 (669)
||+|.. .+..++.||..|||||++.....++|+||||||||||||+||.+||.+..
T Consensus 236 RDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVd 315 (904)
T KOG4721|consen 236 RDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVD 315 (904)
T ss_pred hccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccc
Confidence 999943 12234569999999999999999999999999999999999999997643
Q ss_pred CCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 587 TGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
...+. | -+-... ...+-+..++..++-++.+||+..|..||++++++.-|+=.++.+
T Consensus 316 ssAII---w-----------GVGsNs----L~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa~pel 372 (904)
T KOG4721|consen 316 SSAII---W-----------GVGSNS----LHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIASPEL 372 (904)
T ss_pred hheeE---E-----------eccCCc----ccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCHHH
Confidence 22210 1 010111 111235567788899999999999999999999998877665554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-31 Score=266.29 Aligned_cols=351 Identities=26% Similarity=0.412 Sum_probs=298.1
Q ss_pred cCCCCCCEEeCCCCcCc-ccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCC
Q 040540 72 GNLSFLVSLDISENNFH-GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLE 150 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 150 (669)
+-|+..+-.|+++|.++ +..|.....++++++|-|...++. .+|+.++.+.+|++|.+++|++. .+.+.+..|+.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 45677888999999999 578999999999999999999987 78999999999999999999997 6778899999999
Q ss_pred eeeccccccc-ccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccC
Q 040540 151 MLRAEFNIIG-GTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESN 229 (669)
Q Consensus 151 ~L~l~~n~l~-~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n 229 (669)
.+.+..|++. .-+|..+..|..|..|+||+|++. +.|..+...+++..|+||+|+|..+.-+.+.+++-|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9999998874 468888999999999999999997 78888999999999999999999766666779999999999999
Q ss_pred CCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCcc-ccCccccCCCCCCCEEEccCCccccCC
Q 040540 230 QLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS-GHIPNTFGNLRHLSVLNVMMNNLTTES 308 (669)
Q Consensus 230 ~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~ 308 (669)
++. .+|+.+. .+..|++|+|++|.+..---..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|++.|++...+
T Consensus 161 rLe-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred hhh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 996 7888876 5889999999999875433334456778888888886543 347889999999999999999987654
Q ss_pred CCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcc
Q 040540 309 SSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNL 388 (669)
Q Consensus 309 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~ 388 (669)
..+.++++|+.|++++|+++...- ..+. -.+++.|+++.|+++ .+|..+..++.|+.|++.+|.+
T Consensus 239 ---------ecly~l~~LrrLNLS~N~iteL~~-~~~~----W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 239 ---------ECLYKLRNLRRLNLSGNKITELNM-TEGE----WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ---------HHHhhhhhhheeccCcCceeeeec-cHHH----Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence 346678899999999999875421 1111 256888999999998 6899999999999999999876
Q ss_pred cc-cCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCccc
Q 040540 389 QG-YVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444 (669)
Q Consensus 389 ~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 444 (669)
.- -+|+.++.+..|+.+..++|++. .+|++++.+.+|+.|.|+.|++. ++|..+
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh
Confidence 53 36888999999999999999885 89999999999999999999997 567654
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=244.31 Aligned_cols=185 Identities=22% Similarity=0.263 Sum_probs=148.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
...+|++++.++.|||||++.+++..++..|||||||.+|+|.+.+-.+ ..+.+..-..++.|+..|+.|||. .+
T Consensus 222 ~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv~n-k~l~ed~~K~~f~Qll~avkYLH~----~G 296 (475)
T KOG0615|consen 222 DVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVVAN-KYLREDLGKLLFKQLLTAVKYLHS----QG 296 (475)
T ss_pred hhHHHHHHHHhcCCCCEEEEeeeeecCCceEEEEEEecCccHHHHHHhc-cccccchhHHHHHHHHHHHHHHHH----cC
Confidence 3568999999999999999999999999999999999999999999854 346666777899999999999994 58
Q ss_pred eeecCCCCc---------------------------ccccccccccccCccccccCCC---cCccccchhhHHHHHHHHh
Q 040540 528 IIHCEGEDS---------------------------VTQTTTMATIGYMAPEYGSEGI---VSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 528 i~h~d~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gvil~el~t 577 (669)
|+|||+|+. ....+.+||+.|.|||++.+.. +..|+|+||+|||||-+++
T Consensus 297 I~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLs 376 (475)
T KOG0615|consen 297 IIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLS 376 (475)
T ss_pred cccccCCcceEEeccCCcceEEEecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEec
Confidence 999999964 1234557999999999997754 4458899999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.+||++...+. .+.+-+..+. .. .-.+.|.+...++.+++.+++..||++|||+.|+++
T Consensus 377 G~pPFS~~~~~~-sl~eQI~~G~-----------y~---f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~ 436 (475)
T KOG0615|consen 377 GYPPFSEEYTDP-SLKEQILKGR-----------YA---FGPLQWDRISEEALDLINWMLVVDPENRPSADEALN 436 (475)
T ss_pred cCCCcccccCCc-cHHHHHhcCc-----------cc---ccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence 999998743322 1222111100 00 111347788889999999999999999999999986
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-29 Score=253.97 Aligned_cols=183 Identities=19% Similarity=0.243 Sum_probs=149.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+-...|+.+|+..+|+|+|.++..+...+..|+|||||++|+|.+.+.. ..+++.+...|.+++.+||+|||. .
T Consensus 315 eLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTDvVt~--~~~~E~qIA~Icre~l~aL~fLH~----~ 388 (550)
T KOG0578|consen 315 ELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTDVVTK--TRMTEGQIAAICREILQGLKFLHA----R 388 (550)
T ss_pred hhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchhhhhhc--ccccHHHHHHHHHHHHHHHHHHHh----c
Confidence 3456799999999999999999999888999999999999999999964 458999999999999999999994 5
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|.. ....+.+||+.|||||+.....|+.|+||||+||+++||+.|.+|
T Consensus 389 gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPP 468 (550)
T KOG0578|consen 389 GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPP 468 (550)
T ss_pred ceeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCC
Confidence 8999999943 134556799999999999999999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|... ... .+.|.-... ..+....++..+..+.+|..+|++.||.+||++.|+++
T Consensus 469 YlnE--~Pl-rAlyLIa~n--------------g~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~ 522 (550)
T KOG0578|consen 469 YLNE--NPL-RALYLIATN--------------GTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLE 522 (550)
T ss_pred ccCC--ChH-HHHHHHhhc--------------CCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhc
Confidence 9641 111 111211110 00112224566778899999999999999999999986
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-29 Score=254.39 Aligned_cols=181 Identities=20% Similarity=0.259 Sum_probs=149.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+...+|+++.+.++|||||++++++.+.+.+|||.|+|++|+|.++++ ++.++.+.+...+++||+.|+.|||. .
T Consensus 63 eKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC~~~sL~el~K-rrk~ltEpEary~l~QIv~GlkYLH~----~ 137 (592)
T KOG0575|consen 63 EKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELCHRGSLMELLK-RRKPLTEPEARYFLRQIVEGLKYLHS----L 137 (592)
T ss_pred HHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEecCCccHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHh----c
Confidence 345679999999999999999999999999999999999999999998 56789999999999999999999994 4
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|||||+|-. ....+.+|||.|.|||++....++..+||||+|||+|-|++|++|
T Consensus 138 ~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PP 217 (592)
T KOG0575|consen 138 GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPP 217 (592)
T ss_pred CceecccchhheeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCC
Confidence 7999998811 234556899999999999999999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|+... +.+.-++ +.... +..|...+..+.+++.+.+.+||.+|||+++|+.
T Consensus 218 Fetk~-----vkety~~-------------Ik~~~--Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~ 268 (592)
T KOG0575|consen 218 FETKT-----VKETYNK-------------IKLNE--YSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLD 268 (592)
T ss_pred cccch-----HHHHHHH-------------HHhcC--cccccccCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 97521 1111110 11111 1113355667889999999999999999999975
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-29 Score=263.97 Aligned_cols=193 Identities=25% Similarity=0.465 Sum_probs=156.9
Q ss_pred ccccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC---------CC----ccCHHHHHHHHHh
Q 040540 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---------NY----FLDILERLNIMID 511 (669)
Q Consensus 445 ~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---------~~----~l~~~~~~~i~~~ 511 (669)
..++|.+|.+.+..++|+|||+++|.|..++..++|+|||..|+|.++|+.+ +. +++..+.+.|+.|
T Consensus 532 ~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~Q 611 (774)
T KOG1026|consen 532 ARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQ 611 (774)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999752 22 3788899999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCcc-----------------------ccc----ccccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSV-----------------------TQT----TTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~-----------------------~~~----~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
||.|++||- +..++|||+..-. ... ...--.+||+||.+..++|+.++|
T Consensus 612 IAaGM~YLs----~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSD 687 (774)
T KOG1026|consen 612 IAAGMEYLS----SHHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESD 687 (774)
T ss_pred HHHHHHHHH----hCcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhh
Confidence 999999995 5679999987310 000 011246899999999999999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||+|||++| |+.||..... ..+.+.++.+. + .+.++.++..+..+|..||+++|.+
T Consensus 688 VWs~GVvLWEIFsyG~QPy~glSn--~EVIe~i~~g~-----------l------L~~Pe~CP~~vY~LM~~CW~~~P~~ 748 (774)
T KOG1026|consen 688 VWSFGVVLWEIFSYGKQPYYGLSN--QEVIECIRAGQ-----------L------LSCPENCPTEVYSLMLECWNENPKR 748 (774)
T ss_pred hhhhhhhhhhhhccccCcccccch--HHHHHHHHcCC-----------c------ccCCCCCCHHHHHHHHHHhhcCccc
Confidence 9999999999998 8999977432 22333333221 1 2346788999999999999999999
Q ss_pred CCCHHHHHHHHHHhHHH
Q 040540 644 RMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~ 660 (669)
||+++||-..|+.....
T Consensus 749 RPsF~eI~~~L~~~~~~ 765 (774)
T KOG1026|consen 749 RPSFKEIHSRLQAWAQA 765 (774)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999987543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-31 Score=256.48 Aligned_cols=362 Identities=30% Similarity=0.445 Sum_probs=288.2
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
.++.+++++|.+.. +.+++.++..|.+|++++|.+. ..|.+++.+.+++.|+.++|+++ .+|+.++++.+|+.|+.+
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 46789999999974 4557899999999999999998 78889999999999999999998 789999999999999999
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
.|.+. .+|++++.+..|..++..+|+++ .+|.++.++.+|..|++.+|++....|..+. ++.|++||...|-++ .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cC
Confidence 99998 78899999999999999999997 7888999999999999999999966666655 999999999999887 57
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCcc-ccCCCCCCEEeCCCCCccccCccccCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNS-ITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
|+.++.+.+|..|++..|.+. .+| .|. +...|..|.+..|++. .+|.. ...++++..||+..|++. ++|..+.-
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 999999999999999999996 677 443 5778999999999986 45544 559999999999999998 78999999
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHh-----------h-------------
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIG-----------N------------- 346 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----------~------------- 346 (669)
+++|..||+++|.+++.+ .+++++ .|+.|.+.+|++..+-..++. .
T Consensus 274 LrsL~rLDlSNN~is~Lp---------~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISSLP---------YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred hhhhhhhcccCCccccCC---------cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 999999999999998764 346677 788888888875432100000 0
Q ss_pred -----------hh--cccc--------------------------ccceEeecCccc-----------------------
Q 040540 347 -----------FS--ASLQ--------------------------NIYAFELGFNDL----------------------- 364 (669)
Q Consensus 347 -----------~~--~~l~--------------------------~l~~l~l~~n~l----------------------- 364 (669)
++ .... -+...+++.|++
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc
Confidence 00 0000 011233333332
Q ss_pred CCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcce
Q 040540 365 NGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLS 437 (669)
Q Consensus 365 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 437 (669)
-+-+|..+..+++|..|++++|-+. .+|..+..+..|++||++.|+|. .+|.++-.+..++.+-.+.|++.
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 2245666788899999999988665 68899999999999999999886 56665544444444444445554
|
|
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=237.64 Aligned_cols=133 Identities=28% Similarity=0.425 Sum_probs=118.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
....|+++++.++|||||.+++++..++++++|||||.+|+|.++++.++ .+++.....++.|+|.|+++||. +.
T Consensus 55 ~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs~yi~~~~-~l~e~t~r~Fm~QLA~alq~L~~----~~ 129 (429)
T KOG0595|consen 55 LLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLSDYIRRRG-RLPEATARHFMQQLASALQFLHE----NN 129 (429)
T ss_pred HHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 34579999999999999999999999999999999999999999999654 58999999999999999999994 58
Q ss_pred eeecCCCCcc------------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 528 IIHCEGEDSV------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 528 i~h~d~~~~~------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
|||||+|+.. ...+.+|++.|||||+....+|+.|+|+||.|+|+||+++
T Consensus 130 IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~ 209 (429)
T KOG0595|consen 130 IIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLT 209 (429)
T ss_pred eeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHh
Confidence 9999999530 1123369999999999999999999999999999999999
Q ss_pred CCCCCCcC
Q 040540 578 RKRPTDEM 585 (669)
Q Consensus 578 g~~p~~~~ 585 (669)
|+.||+..
T Consensus 210 g~~Pf~a~ 217 (429)
T KOG0595|consen 210 GKPPFDAE 217 (429)
T ss_pred CCCCcccc
Confidence 99999863
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-28 Score=236.38 Aligned_cols=192 Identities=21% Similarity=0.232 Sum_probs=148.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+..|+.++||||++++..+..+...|+||.||.+|++.++++.. ...+++.....|.+++.+||.|||+.
T Consensus 69 d~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~--- 145 (516)
T KOG0582|consen 69 DALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN--- 145 (516)
T ss_pred HHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc---
Confidence 35667999999999999999999999999999999999999999999852 23488888999999999999999954
Q ss_pred CCeeecCCCCc----------------------------ccc-cccccccccCccccccC--CCcCccccchhhHHHHHH
Q 040540 526 APIIHCEGEDS----------------------------VTQ-TTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLME 574 (669)
Q Consensus 526 ~~i~h~d~~~~----------------------------~~~-~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~e 574 (669)
+-||||+|.. ... .+.+||+.|||||++.. ..|+.|+|||||||+..|
T Consensus 146 -G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~E 224 (516)
T KOG0582|consen 146 -GHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACE 224 (516)
T ss_pred -CceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHH
Confidence 7899999943 011 45579999999999544 559999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+++|..||..+.+-.. +..-+...+|...... .+..........+.+++..|+++||++|||+++.++
T Consensus 225 LA~G~aPf~k~pPmkv-Ll~tLqn~pp~~~t~~---------~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk 292 (516)
T KOG0582|consen 225 LAHGHAPFSKYPPMKV-LLLTLQNDPPTLLTSG---------LDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK 292 (516)
T ss_pred HhcCCCCcccCChHHH-HHHHhcCCCCCccccc---------CChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 9999999987543221 2222222222111001 111223344557899999999999999999999976
|
|
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=240.79 Aligned_cols=191 Identities=21% Similarity=0.242 Sum_probs=147.6
Q ss_pred ccCchhhhhhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+.+.+|+..+.+++|||++++++++.. ....++||||+++|+|.+++++. ..+++....+++.++++|+.|+|..
T Consensus 63 ~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lH~~ 141 (283)
T PHA02988 63 DITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKE-KDLSFKTKLDMAIDCCKGLYNLYKY 141 (283)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhC-CCCChhHHHHHHHHHHHHHHHHHhc
Confidence 456689999999999999999998865 34678999999999999999864 4688999999999999999999952
Q ss_pred CCCCCeeecCCCCcc----------------------cccccccccccCccccccC--CCcCccccchhhHHHHHHHHhC
Q 040540 523 HSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|||+++.. ......||..|+|||++.+ ..++.++|||||||++|||+||
T Consensus 142 ---~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g 218 (283)
T PHA02988 142 ---TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTG 218 (283)
T ss_pred ---CCCCCCcCChhhEEECCCCcEEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHC
Confidence 356799998531 0112357889999999876 6799999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||..... ..+...+..... + + +.+..++..+.+++.+||+.||++||||.|+++.|+.++
T Consensus 219 ~~Pf~~~~~--~~~~~~i~~~~~-~------~---------~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~ 280 (283)
T PHA02988 219 KIPFENLTT--KEIYDLIINKNN-S------L---------KLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK 280 (283)
T ss_pred CCCCCCCCH--HHHHHHHHhcCC-C------C---------CCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence 999976321 111111111000 0 0 011133456889999999999999999999999999876
Q ss_pred H
Q 040540 659 V 659 (669)
Q Consensus 659 ~ 659 (669)
.
T Consensus 281 ~ 281 (283)
T PHA02988 281 F 281 (283)
T ss_pred h
Confidence 3
|
|
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-28 Score=237.10 Aligned_cols=183 Identities=20% Similarity=0.255 Sum_probs=147.9
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+++.|+..+..++++|+.++++.+..+...+++||||.+|++.+.++. +..+++....-|++++..|+.|+|..
T Consensus 55 Iediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~~-~~~~~E~~i~~ilre~l~~l~ylH~~--- 130 (467)
T KOG0201|consen 55 IEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLKS-GNILDEFEIAVILREVLKGLDYLHSE--- 130 (467)
T ss_pred hHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhcc-CCCCccceeeeehHHHHHHhhhhhhc---
Confidence 45677899999999999999999999999999999999999999999974 44457777777889999999999954
Q ss_pred CCeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+.+|||+|.. ....+++||+.|||||++.+..|+.||||||+||+.+||++|.+
T Consensus 131 -~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GeP 209 (467)
T KOG0201|consen 131 -KKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEP 209 (467)
T ss_pred -ceecccccccceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCC
Confidence 7899999943 12356689999999999998899999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|+....+. ++--.+.+ ..++.. ...+...+++++..|+.+||+.||++.++++
T Consensus 210 P~s~~hPm--------------rvlflIpk---~~PP~L--~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK 262 (467)
T KOG0201|consen 210 PHSKLHPM--------------RVLFLIPK---SAPPRL--DGDFSPPFKEFVEACLDKNPEFRPSAKELLK 262 (467)
T ss_pred CCcccCcc--------------eEEEeccC---CCCCcc--ccccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence 99775431 11111111 111111 1245667899999999999999999999976
|
|
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-28 Score=224.30 Aligned_cols=192 Identities=18% Similarity=0.263 Sum_probs=159.2
Q ss_pred CCcccccccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhh
Q 040540 440 IPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 440 ~p~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
.|-...++++..|+.+|.+++.+.+|+++|.+......|||||||.-|++.+.++-++.++.+.+...|..+..+||+||
T Consensus 66 VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YL 145 (502)
T KOG0574|consen 66 VPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYL 145 (502)
T ss_pred cCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHH
Confidence 44444566788899999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred hcCCCCCCeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLME 574 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~e 574 (669)
|+. .-||||+|.. ....+.+||+.|||||++....|..++||||+||+..|
T Consensus 146 H~~----~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIE 221 (502)
T KOG0574|consen 146 HDL----KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIE 221 (502)
T ss_pred HHH----HHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhh
Confidence 965 6799999843 23455679999999999999999999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..|++||.+..+-... ..+| ...++-|..+...+..+.+++.+|+.++|++|-|+.++++
T Consensus 222 MAEG~PPYsDIHPMRAI------FMIP-----------T~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~ 282 (502)
T KOG0574|consen 222 MAEGRPPYSDIHPMRAI------FMIP-----------TKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE 282 (502)
T ss_pred hhcCCCCccccccccee------Eecc-----------CCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 99999999874321100 0001 1112334456778888999999999999999999888766
|
|
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-27 Score=233.68 Aligned_cols=187 Identities=22% Similarity=0.285 Sum_probs=142.8
Q ss_pred cccCchhhhhhccccccccceecccccccc--ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+.+..|+.++.+++|||||+++|...... ..++.|||+++|+|.+++.+.+..+++.....+..+|++||+|||
T Consensus 58 ~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylH--- 134 (313)
T KOG0198|consen 58 SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLH--- 134 (313)
T ss_pred HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence 345678999999999999999999865544 578999999999999999876557899999999999999999999
Q ss_pred CCCCeeecCCCCcc---------------------c--------ccccccccccCccccccCCC-cCccccchhhHHHHH
Q 040540 524 SSAPIIHCEGEDSV---------------------T--------QTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLM 573 (669)
Q Consensus 524 ~~~~i~h~d~~~~~---------------------~--------~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~ 573 (669)
+.+++|||+|+.. . .....||+.|||||++..+. ...++||||+||++.
T Consensus 135 -s~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVv 213 (313)
T KOG0198|consen 135 -SKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVV 213 (313)
T ss_pred -hCCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEE
Confidence 4689999999320 0 11235999999999998643 335999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||+||++||.... + ...++-...... .-|.+ +...+.++.+++.+|++.||++||||.++++-
T Consensus 214 EM~Tg~~PW~~~~-~---~~~~~~~ig~~~----~~P~i---------p~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~h 276 (313)
T KOG0198|consen 214 EMLTGKPPWSEFF-E---EAEALLLIGRED----SLPEI---------PDSLSDEAKDFLRKCFKRDPEKRPTAEELLEH 276 (313)
T ss_pred eccCCCCcchhhc-c---hHHHHHHHhccC----CCCCC---------CcccCHHHHHHHHHHhhcCcccCcCHHHHhhC
Confidence 9999999997631 1 111111100000 00111 22345677899999999999999999999874
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-27 Score=260.86 Aligned_cols=194 Identities=24% Similarity=0.384 Sum_probs=157.5
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC------CCccCHHHHHHHHHhHHhhhhhh
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH------NYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~------~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
..+|..|..+|++..|||||+++|.|......+|++|||.+|+|..+|++. ...+...+.+.|++|||+|+.||
T Consensus 739 ~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YL 818 (1025)
T KOG1095|consen 739 VSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYL 818 (1025)
T ss_pred HHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHH
Confidence 356788999999999999999999999988899999999999999999985 56788899999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-----------------------cccccc----cccccCccccccCCCcCccccchhhHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV-----------------------TQTTTM----ATIGYMAPEYGSEGIVSAKCDVYSYGVLL 572 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-----------------------~~~~~~----gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil 572 (669)
+ +...||||+..-. ...... --..|||||.+.++.++.|+|||||||++
T Consensus 819 e----~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVll 894 (1025)
T KOG1095|consen 819 E----SKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLL 894 (1025)
T ss_pred H----hCCCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHH
Confidence 8 4579999987210 000111 12589999999999999999999999999
Q ss_pred HHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 573 METFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 573 ~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
||++| |..||.+....+ -+..|+..+ |.+.+..|+..+.++|..||+.+|++||++.+++
T Consensus 895 WEifslG~~PY~~~~n~~-v~~~~~~gg------------------RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~ 955 (1025)
T KOG1095|consen 895 WEIFSLGATPYPSRSNFE-VLLDVLEGG------------------RLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIV 955 (1025)
T ss_pred HHHHhCCCCCCCCcchHH-HHHHHHhCC------------------ccCCCCCCChHHHHHHHHHccCChhhCccHHHHH
Confidence 99999 788997743211 122222221 2334667888899999999999999999999999
Q ss_pred HHHHHhHHHhh
Q 040540 652 AKLKKIKVKFL 662 (669)
Q Consensus 652 ~~l~~~~~~~~ 662 (669)
+.+..+..-..
T Consensus 956 ~q~~~i~~~~~ 966 (1025)
T KOG1095|consen 956 EQDPAISNAAL 966 (1025)
T ss_pred hhhhhhhhhhc
Confidence 99999876653
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=217.99 Aligned_cols=186 Identities=17% Similarity=0.208 Sum_probs=144.6
Q ss_pred cccCchhhhhhccccccccceecc-ccccccc-cceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIIS-SCSNPDF-KALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~-~~~~~~~-~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.++...|+.++++++|||||++++ .+..+.. .+||||||..|+|.+.++. .+..+++....+++.|.++||..+|
T Consensus 62 rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH 141 (375)
T KOG0591|consen 62 RQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCH 141 (375)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999998 4444555 7899999999999999974 4456899999999999999999999
Q ss_pred cCCCCCCeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
..-.+..|+|||+|+. ....+.+|||.||+||.+.+..|+.|+||||+||++|||
T Consensus 142 ~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEM 221 (375)
T KOG0591|consen 142 SKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEM 221 (375)
T ss_pred ccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHH
Confidence 6422344999999964 123345799999999999999999999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhh-HHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAK-MDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+.-+.||.+. .-..+.+-+. +.. .+ +.| +..+.++.+++.-|+..||..||+.-..
T Consensus 222 caL~~PF~g~--n~~~L~~KI~---qgd-----~~---------~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~ 278 (375)
T KOG0591|consen 222 CALQSPFYGD--NLLSLCKKIE---QGD-----YP---------PLPDEHYSTDLRELINMCIAVDPEQRPDTVPY 278 (375)
T ss_pred HhcCCCcccc--cHHHHHHHHH---cCC-----CC---------CCcHHHhhhHHHHHHHHHccCCcccCCCcchH
Confidence 9999999763 1111111111 000 01 113 5677889999999999999999984333
|
|
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-27 Score=244.07 Aligned_cols=194 Identities=27% Similarity=0.405 Sum_probs=156.3
Q ss_pred ccccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 445 ~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+.|..|..+|++++|+|||+++|.+......++|||+|+||+|.++|++.+..++..++..++.+.|+||+|||.
T Consensus 204 ~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~--- 280 (474)
T KOG0194|consen 204 QIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHS--- 280 (474)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHH---
Confidence 34578899999999999999999999999999999999999999999999876679999999999999999999994
Q ss_pred CCCeeecCCCCc--------c-ccc----------------ccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 525 SAPIIHCEGEDS--------V-TQT----------------TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 525 ~~~i~h~d~~~~--------~-~~~----------------~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
..+||||+..- . ... ...--..|+|||.+....|+.|+|||||||++||+.+ |
T Consensus 281 -k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g 359 (474)
T KOG0194|consen 281 -KNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENG 359 (474)
T ss_pred -CCCcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccC
Confidence 47999998621 0 000 0012268999999999999999999999999999999 8
Q ss_pred CCCCCcCCCCCccHHHHH-HHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 579 KRPTDEMFTGEMSLRRWV-KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
..||.++. ...+..++ ....+. +.+...+..+..++.+||..+|++||+|.+|.+.++.+
T Consensus 360 ~~Py~g~~--~~~v~~kI~~~~~r~-----------------~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~ 420 (474)
T KOG0194|consen 360 AEPYPGMK--NYEVKAKIVKNGYRM-----------------PIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEAL 420 (474)
T ss_pred CCCCCCCC--HHHHHHHHHhcCccC-----------------CCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHH
Confidence 88997743 22344444 222221 11223345677888999999999999999999999998
Q ss_pred HHHh
Q 040540 658 KVKF 661 (669)
Q Consensus 658 ~~~~ 661 (669)
....
T Consensus 421 ~~~~ 424 (474)
T KOG0194|consen 421 EKKK 424 (474)
T ss_pred Hhcc
Confidence 7653
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-27 Score=239.22 Aligned_cols=201 Identities=21% Similarity=0.389 Sum_probs=158.0
Q ss_pred CcccccccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 441 p~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
|+.-..+.|..|+..+++-+|.||+=+.|+|..+.. .||.-+|.+-+|+.+|+.....++..+...|+.|||+|+.|||
T Consensus 427 pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLH 505 (678)
T KOG0193|consen 427 PTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLH 505 (678)
T ss_pred CCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 333366789999999999999999999999999988 8999999999999999987777888899999999999999999
Q ss_pred cCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccC---CCcCccccchhhHH
Q 040540 521 HGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGV 570 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv 570 (669)
.+.|||+|+|... .....-|..-|||||+++. ..|+..+|||||||
T Consensus 506 ----AK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGi 581 (678)
T KOG0193|consen 506 ----AKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGI 581 (678)
T ss_pred ----hhhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhH
Confidence 4589999998531 0011125678999998754 56999999999999
Q ss_pred HHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 571 LLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 571 il~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
|+|||+||..||....++.+. |+.. +-...+.+.. ...++..++.+++..||..+|++||.+.++
T Consensus 582 V~YELltg~lPysi~~~dqIi---fmVG------rG~l~pd~s~------~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~i 646 (678)
T KOG0193|consen 582 VWYELLTGELPYSIQNRDQII---FMVG------RGYLMPDLSK------IRSNCPKAMKRLLSDCWKFDREERPLFPQL 646 (678)
T ss_pred HHHHHHhCcCCcCCCChhheE---EEec------ccccCccchh------hhccCHHHHHHHHHHHHhcCcccCccHHHH
Confidence 999999999999853333321 1100 0000111111 134667789999999999999999999999
Q ss_pred HHHHHHhHHHh
Q 040540 651 AAKLKKIKVKF 661 (669)
Q Consensus 651 ~~~l~~~~~~~ 661 (669)
+.+|+.+.++.
T Consensus 647 l~~l~~l~~~~ 657 (678)
T KOG0193|consen 647 LSKLEELLPSL 657 (678)
T ss_pred HHHHHHhhhcc
Confidence 99999887753
|
|
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-26 Score=227.91 Aligned_cols=188 Identities=22% Similarity=0.351 Sum_probs=148.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++.+...+..++||||+++|+|.+++......+++.+...++.++++|++|||. .
T Consensus 51 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~----~ 126 (266)
T cd05064 51 RGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSE----M 126 (266)
T ss_pred HHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 356678999999999999999999998889999999999999999998755678999999999999999999994 4
Q ss_pred CeeecCCCCccc------------------------c--cccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSVT------------------------Q--TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~------------------------~--~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|||+++... . ....++..|+|||++.+..++.++|||||||++||+++ |+
T Consensus 127 ~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~ 206 (266)
T cd05064 127 GYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGE 206 (266)
T ss_pred CEeeccccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCC
Confidence 799999984310 0 01124568999999988889999999999999999775 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
.||..... ..+...+..... .+.+..++..+.+++.+||+.+|++||++.++.+.|+++
T Consensus 207 ~p~~~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 207 RPYWDMSG--QDVIKAVEDGFR-----------------LPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred CCcCcCCH--HHHHHHHHCCCC-----------------CCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 99976321 112222221110 011223445678999999999999999999999998765
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-26 Score=237.67 Aligned_cols=185 Identities=23% Similarity=0.315 Sum_probs=146.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCcc--CHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL--DILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l--~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+....|+..-+.++|.|||+++|.|...++..|.||.+|||+|.++|+..=.++ .+.+.--+.+||.+||.|||..
T Consensus 617 QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen-- 694 (1226)
T KOG4279|consen 617 QPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHEN-- 694 (1226)
T ss_pred ccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhc--
Confidence 455678999999999999999999999999999999999999999999754455 5566667889999999999954
Q ss_pred CCCeeecCCCCc--------------------------ccccccccccccCccccccCC--CcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDS--------------------------VTQTTTMATIGYMAPEYGSEG--IVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gvil~el~ 576 (669)
.|+|||+|.. ....++.||.-|||||+++.+ .|+.++|||||||++.||.
T Consensus 695 --~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMA 772 (1226)
T KOG4279|consen 695 --KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMA 772 (1226)
T ss_pred --ceeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeec
Confidence 7999999943 012234599999999999874 5999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||++||-+.......+. +.+ +.+ +-|. -+.+...++..++.+|...||.+||+++++++
T Consensus 773 TGrPPF~ElgspqAAMF---kVG----myK-vHP~---------iPeelsaeak~FilrcFepd~~~R~sA~~LL~ 831 (1226)
T KOG4279|consen 773 TGRPPFVELGSPQAAMF---KVG----MYK-VHPP---------IPEELSAEAKNFILRCFEPDPCDRPSAKDLLQ 831 (1226)
T ss_pred cCCCCeeecCChhHhhh---hhc----cee-cCCC---------CcHHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence 99999977543222111 111 111 1111 25567788999999999999999999999876
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-26 Score=235.23 Aligned_cols=191 Identities=21% Similarity=0.382 Sum_probs=144.4
Q ss_pred ccCchhhhhhccc-cccccceecccccccc-ccceeeccCCCCChHHhhhcCC---------------------------
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHN--------------------------- 497 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~--------------------------- 497 (669)
+.+..|+.++..+ +|||+++++++|.... ..+++|||+++|+|.+++....
T Consensus 55 ~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (338)
T cd05102 55 KALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVD 134 (338)
T ss_pred HHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccc
Confidence 3466789999988 8999999999887644 5789999999999999987421
Q ss_pred ----------------------------------CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCccc-----
Q 040540 498 ----------------------------------YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVT----- 538 (669)
Q Consensus 498 ----------------------------------~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~~----- 538 (669)
.++.+.+...++.|+++|++|||. .+|+|||+|+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~----~~ivHrDiKp~Nil~~~~ 210 (338)
T cd05102 135 RRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLAS----RKCIHRDLAARNILLSEN 210 (338)
T ss_pred cccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHH----CCEECCCCccceEEEcCC
Confidence 236777888999999999999994 4899999995410
Q ss_pred ----------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHH
Q 040540 539 ----------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRW 595 (669)
Q Consensus 539 ----------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~ 595 (669)
.....++..|||||++.+..++.++|||||||++|||+| |+.||....... .+...
T Consensus 211 ~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~-~~~~~ 289 (338)
T cd05102 211 NVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE-EFCQR 289 (338)
T ss_pred CcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH-HHHHH
Confidence 001124578999999988889999999999999999997 999987532211 11111
Q ss_pred HHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 596 VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
+...... ..+...+..+.+++.+||+.||++||||.|++++|+++..
T Consensus 290 ~~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~ 336 (338)
T cd05102 290 LKDGTRM-----------------RAPENATPEIYRIMLACWQGDPKERPTFSALVEILGDLLQ 336 (338)
T ss_pred HhcCCCC-----------------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 1111000 0012334567899999999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-27 Score=245.42 Aligned_cols=192 Identities=22% Similarity=0.415 Sum_probs=162.0
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.++|..|..+|.+..||||+++.|.......++||.|||.+|+|..+|+.+...+.+.+...+.++||.|++||- .
T Consensus 674 rrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLs----d 749 (996)
T KOG0196|consen 674 RRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLS----D 749 (996)
T ss_pred HhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHh----h
Confidence 468899999999999999999999999999999999999999999999988778999999999999999999995 5
Q ss_pred CCeeecCCCCc--------------------------cccccccc--ccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDS--------------------------VTQTTTMA--TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~--------------------------~~~~~~~g--t~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+.+|||+..- ...++..| -.+|.|||.+..++++.++|||||||++||+++
T Consensus 750 m~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmS 829 (996)
T KOG0196|consen 750 MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 829 (996)
T ss_pred cCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecc
Confidence 68999997621 11112222 258999999999999999999999999999987
Q ss_pred -CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 578 -RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 578 -g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
|..||.++..++ +...+ .+++|.|.+.+|+..+.++|+.||++|=.+||++.+|+.+|.+
T Consensus 830 yGERPYWdmSNQd--VIkaI-----------------e~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDk 890 (996)
T KOG0196|consen 830 YGERPYWDMSNQD--VIKAI-----------------EQGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDK 890 (996)
T ss_pred cCCCcccccchHH--HHHHH-----------------HhccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 999998865322 11111 1235567788999999999999999999999999999999999
Q ss_pred hHHH
Q 040540 657 IKVK 660 (669)
Q Consensus 657 ~~~~ 660 (669)
+.+.
T Consensus 891 lIrn 894 (996)
T KOG0196|consen 891 LIRN 894 (996)
T ss_pred HhcC
Confidence 8654
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-26 Score=207.87 Aligned_cols=187 Identities=19% Similarity=0.260 Sum_probs=149.1
Q ss_pred ccccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 445 ~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.++.+.+|+.+.+.++||||+++...+....+.++|+|+|.+++|..-|-.+ ...++...-.++.||..++.|+|.
T Consensus 53 ~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~dl~~eIV~R-~~ySEa~aSH~~rQiLeal~yCH~--- 128 (355)
T KOG0033|consen 53 DFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCIQQILEALAYCHS--- 128 (355)
T ss_pred cHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 4567788999999999999999999999999999999999999998766533 456777778899999999999994
Q ss_pred CCCeeecCCCCc---------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 525 SAPIIHCEGEDS---------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 525 ~~~i~h~d~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
++|+|||+|+. ......+|||+|||||+.....|+.++|||+.|||||-++.
T Consensus 129 -n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~ 207 (355)
T KOG0033|consen 129 -NGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLV 207 (355)
T ss_pred -cCceeccCChhheeeeeccCCCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHh
Confidence 58999999954 11223469999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..||.+.. ...+-+-+..+- .| ...++|+...+.+.+++.+|+..||++|-|+.|+++
T Consensus 208 G~~PF~~~~--~~rlye~I~~g~-------yd-------~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~ 266 (355)
T KOG0033|consen 208 GYPPFWDED--QHRLYEQIKAGA-------YD-------YPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALK 266 (355)
T ss_pred CCCCCCCcc--HHHHHHHHhccc-------cC-------CCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhC
Confidence 999997621 111111111100 00 112346677788899999999999999999998875
|
|
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-26 Score=232.70 Aligned_cols=180 Identities=22% Similarity=0.259 Sum_probs=148.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.+|+-+.|||++.+++.+.+....|+|.||+++|.|++++.++ .++.+.+..+++.||..|+.|+|+. .
T Consensus 58 ~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv~k-G~l~e~eaa~ff~QIi~gv~yCH~~----~ 132 (786)
T KOG0588|consen 58 GIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLVRK-GPLPEREAAHFFRQILDGVSYCHAF----N 132 (786)
T ss_pred chhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhhh----c
Confidence 4567999999999999999999999999999999999999999999864 5688899999999999999999954 7
Q ss_pred eeecCCCCc------------------------ccccccccccccCccccccCCCcC-ccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVS-AKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+. ....+.+|++.|.|||++.+..|. .++||||.|||||.++||+.||
T Consensus 133 icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPF 212 (786)
T KOG0588|consen 133 ICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPF 212 (786)
T ss_pred ceeccCCchhhhhhcccCEeeeccceeecccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCC
Confidence 999999953 112345799999999999998764 7999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++.. ...+..-|+.+. |.-+...+.++++++.+|+..||+.|-|++||.+
T Consensus 213 dDdN--ir~LLlKV~~G~------------------f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~k 262 (786)
T KOG0588|consen 213 DDDN--IRVLLLKVQRGV------------------FEMPSNISSEAQDLLRRMLDVDPSTRITTEEILK 262 (786)
T ss_pred CCcc--HHHHHHHHHcCc------------------ccCCCcCCHHHHHHHHHHhccCccccccHHHHhh
Confidence 8521 111222222211 1124456678899999999999999999999976
|
|
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-26 Score=233.50 Aligned_cols=184 Identities=22% Similarity=0.371 Sum_probs=147.0
Q ss_pred cccCchhhhhhccccccccceeccccccccc--cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDF--KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~--~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+.|..|+.+++.++|+||++++.++..... ..+|.|.|..|+|..|.++++ .+......+.++||.+||.|||..
T Consensus 85 leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~kk~~-~vn~kaik~W~RQILkGL~yLHs~- 162 (632)
T KOG0584|consen 85 LERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELFTSGTLREYRKKHR-RVNIKAIKSWCRQILKGLVYLHSQ- 162 (632)
T ss_pred HHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecccCCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhhhhcC-
Confidence 3567889999999999999999998877554 667889999999999998754 478888899999999999999965
Q ss_pred CCCCeeecCCCCc------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 524 SSAPIIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 524 ~~~~i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.|||||||+|=. ....+.+|||.|||||++. ..|.+.+||||||..++||+|+.
T Consensus 163 -~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~e 240 (632)
T KOG0584|consen 163 -DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSE 240 (632)
T ss_pred -CCCccccccccceEEEcCCcCceeecchhHHHHhhccccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhcc
Confidence 789999999811 1233457999999999987 67999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhC-CCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESL-PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.+-. ....+-.-|..+. |..+.++-| +.+.+||.+|+.. .++|||+.|+++
T Consensus 241 YPYsEC~-n~AQIYKKV~SGiKP~sl~kV~d-----------------Pevr~fIekCl~~-~~~R~sa~eLL~ 295 (632)
T KOG0584|consen 241 YPYSECT-NPAQIYKKVTSGIKPAALSKVKD-----------------PEVREFIEKCLAT-KSERLSAKELLK 295 (632)
T ss_pred CChhhhC-CHHHHHHHHHcCCCHHHhhccCC-----------------HHHHHHHHHHhcC-chhccCHHHHhh
Confidence 9998743 2222323333332 333333322 3578999999999 899999999876
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-26 Score=231.48 Aligned_cols=192 Identities=24% Similarity=0.362 Sum_probs=153.8
Q ss_pred cccccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 444 LAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 444 ~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+...+|..|..+|..++|||+|+++|.|......|||.|||.+|+|.++|++.. ..++-.-.+.++-||+.|++||.
T Consensus 305 MeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLE-- 382 (1157)
T KOG4278|consen 305 MEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLE-- 382 (1157)
T ss_pred hhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHH--
Confidence 346789999999999999999999999999999999999999999999999733 34555566778899999999996
Q ss_pred CCCCCeeecCCCCc-----------------------ccccc---cccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 523 HSSAPIIHCEGEDS-----------------------VTQTT---TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 523 ~~~~~i~h~d~~~~-----------------------~~~~~---~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+.+||||+..- ...+. ..--..|.|||-+....++-|+|||+|||+|||+.
T Consensus 383 --kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIA 460 (1157)
T KOG4278|consen 383 --KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIA 460 (1157)
T ss_pred --HhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHH
Confidence 457999997621 01111 11235799999999999999999999999999999
Q ss_pred h-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 T-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
| |-.||.+... .+ + ..+....+|+..+..|++.+.++|..||+.+|++||++.|+-+.++
T Consensus 461 TYGMsPYPGidl-----Sq---------V-----Y~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafE 521 (1157)
T KOG4278|consen 461 TYGMSPYPGIDL-----SQ---------V-----YGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFE 521 (1157)
T ss_pred hcCCCCCCCccH-----HH---------H-----HHHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHH
Confidence 8 7788865321 11 0 1123334556667889999999999999999999999999999988
Q ss_pred HhH
Q 040540 656 KIK 658 (669)
Q Consensus 656 ~~~ 658 (669)
.+-
T Consensus 522 tmf 524 (1157)
T KOG4278|consen 522 TMF 524 (1157)
T ss_pred HHh
Confidence 753
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-26 Score=226.98 Aligned_cols=186 Identities=31% Similarity=0.494 Sum_probs=138.8
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
...+..|+..+.+++|||+++++|+|......++|+||+++|+|.++++.. ...+++..+..|+.|+++|+.|||..
T Consensus 45 ~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-- 122 (259)
T PF07714_consen 45 EEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN-- 122 (259)
T ss_dssp HHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT--
T ss_pred ceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 356778999999999999999999999777789999999999999999876 56789999999999999999999953
Q ss_pred CCCeeecCCCCcc-------------------c--------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 525 SAPIIHCEGEDSV-------------------T--------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------~--------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
+++|+++.... . .....+...|+|||...+..++.|+||||||+++|||+|
T Consensus 123 --~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~ 200 (259)
T PF07714_consen 123 --NIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILT 200 (259)
T ss_dssp --TEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHT
T ss_pred --cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999987420 0 011235678999999988889999999999999999999
Q ss_pred -CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 578 -RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 578 -g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
|+.||... ....+...+..... .+.+..++..+.+++.+||..+|++||+|.++++.|
T Consensus 201 ~~~~p~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 201 LGKFPFSDY--DNEEIIEKLKQGQR-----------------LPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp TSSGTTTTS--CHHHHHHHHHTTEE-----------------TTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred ccccccccc--cccccccccccccc-----------------ceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 67888653 12222222211110 011223345678999999999999999999999876
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-25 Score=221.95 Aligned_cols=188 Identities=20% Similarity=0.224 Sum_probs=144.5
Q ss_pred hhhhhhcccc-ccccceecccccccc-ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 451 SECEVLRNVR-HRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 451 ~e~~~l~~l~-h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+|+..++++. ||||+++...+.+.+ ..++|||||++ +|++++++++..+++.+..+|+.||.+||+|+|. +++
T Consensus 57 REvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk----~Gf 131 (538)
T KOG0661|consen 57 REVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHK----HGF 131 (538)
T ss_pred HHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHh----cCc
Confidence 5888899998 999999999998876 88999999985 9999999988899999999999999999999994 589
Q ss_pred eecCCCCc------------------------ccccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 529 IHCEGEDS------------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 529 ~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+|||+|+. ...+..+.|..|.|||++.+ +.|+.+.|+||+|||++|+.+-++-|.
T Consensus 132 FHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFP 211 (538)
T KOG0661|consen 132 FHRDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFP 211 (538)
T ss_pred ccccCChhheEecccceeEecccccccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCC
Confidence 99999954 12345578999999998765 669999999999999999999987775
Q ss_pred cCCCCCc--------------------cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 584 EMFTGEM--------------------SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 584 ~~~~~~~--------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
+..+-+. .+...+.-.+|.....-++. .-..+..++.+++.+|++.||++
T Consensus 212 G~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~----------L~p~~s~~~~~li~~ll~WDP~k 281 (538)
T KOG0661|consen 212 GASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKD----------LLPNASSEAASLIERLLAWDPDK 281 (538)
T ss_pred CCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHH----------hCcccCHHHHHHHHHHhcCCCcc
Confidence 5321110 01111111111111100000 01126677889999999999999
Q ss_pred CCCHHHHHHH
Q 040540 644 RMHMTDAAAK 653 (669)
Q Consensus 644 Rps~~~v~~~ 653 (669)
|||+.++++.
T Consensus 282 RpTA~~al~~ 291 (538)
T KOG0661|consen 282 RPTASQALQH 291 (538)
T ss_pred CccHHHHhcC
Confidence 9999999873
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-25 Score=214.47 Aligned_cols=175 Identities=23% Similarity=0.224 Sum_probs=138.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
...+|..++..++||.+|+++..++..+..|+|+||+.||.|+-.|.+++. +++....-++.+|+-||.|||. .+
T Consensus 71 ~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~GGeLf~hL~~eg~-F~E~~arfYlaEi~lAL~~LH~----~g 145 (357)
T KOG0598|consen 71 HTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLNGGELFYHLQREGR-FSEDRARFYLAEIVLALGYLHS----KG 145 (357)
T ss_pred HHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccCCccHHHHHHhcCC-cchhHHHHHHHHHHHHHHHHHh----CC
Confidence 455788999999999999999999999999999999999999999986554 5666555678899999999994 58
Q ss_pred eeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|||||+|+. ....+.+||+.|||||++.+..|+..+|+||+||++|||++|.+||
T Consensus 146 IiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF 225 (357)
T KOG0598|consen 146 IIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPF 225 (357)
T ss_pred eeeccCCHHHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCC
Confidence 999999953 1233458999999999999999999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
.... ..++.+.-...+.. ..+.-....+.+++.+.+.+||++|-.
T Consensus 226 ~~~~-----~~~~~~~I~~~k~~--------------~~p~~ls~~ardll~~LL~rdp~~RLg 270 (357)
T KOG0598|consen 226 YAED-----VKKMYDKILKGKLP--------------LPPGYLSEEARDLLKKLLKRDPRQRLG 270 (357)
T ss_pred cCcc-----HHHHHHHHhcCcCC--------------CCCccCCHHHHHHHHHHhccCHHHhcC
Confidence 7632 23333322222100 001123446789999999999999963
|
|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-25 Score=228.07 Aligned_cols=178 Identities=23% Similarity=0.284 Sum_probs=143.1
Q ss_pred Cchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
..+|+.+++.++ ||||++++..+......++||||+.+|+|++++.+ ...+.+.+..+++.|++.|++|+| +.+
T Consensus 66 i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL~~~i~~-~g~l~E~~ar~~F~Qlisav~y~H----~~g 140 (370)
T KOG0583|consen 66 IKREISILRRLRSHPNIIRLLEVFATPTKIYIVMEYCSGGDLFDYIVN-KGRLKEDEARKYFRQLISAVAYCH----SRG 140 (370)
T ss_pred hHHHHHHHHHhccCCCEeEEEEEEecCCeEEEEEEecCCccHHHHHHH-cCCCChHHHHHHHHHHHHHHHHHH----hCC
Confidence 347899999999 99999999999998889999999999999999997 566888899999999999999999 458
Q ss_pred eeecCCCCc--------------------------ccccccccccccCccccccCCC-cC-ccccchhhHHHHHHHHhCC
Q 040540 528 IIHCEGEDS--------------------------VTQTTTMATIGYMAPEYGSEGI-VS-AKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 528 i~h~d~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~~-~~-~~~Dv~s~Gvil~el~tg~ 579 (669)
|+|||+|.. ....+.+||+.|+|||++.+.. |+ .++||||+||+||.|++|+
T Consensus 141 i~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~ 220 (370)
T KOG0583|consen 141 IVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGR 220 (370)
T ss_pred EeeCCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCC
Confidence 999999932 1123457999999999999866 75 7899999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHH-HHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDC-LLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
.||++. ....+..-+... ...+ +... ..++..++.+|+..||.+|+++.+|+
T Consensus 221 ~PF~d~--~~~~l~~ki~~~----------------~~~~--p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~ 273 (370)
T KOG0583|consen 221 LPFDDS--NVPNLYRKIRKG----------------EFKI--PSYLLSPEARSLIEKMLVPDPSTRITLLEIL 273 (370)
T ss_pred CCCCCc--cHHHHHHHHhcC----------------CccC--CCCcCCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 999872 111111111110 0001 1112 56788999999999999999999998
|
|
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-25 Score=222.96 Aligned_cols=191 Identities=26% Similarity=0.446 Sum_probs=149.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHHh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMID 511 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~~ 511 (669)
+.+..|+..++.++|+|++++++++......++||||+++++|.+++.... ..+++..+.+++.+
T Consensus 52 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 131 (291)
T cd05094 52 KDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQ 131 (291)
T ss_pred HHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHH
Confidence 356678999999999999999999998888999999999999999997532 24788999999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
+++|++|||. .+++|+|+++... .....|+..|+|||+..+..++.++|
T Consensus 132 i~~al~~lH~----~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D 207 (291)
T cd05094 132 IASGMVYLAS----QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESD 207 (291)
T ss_pred HHHHHHHHHh----CCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhh
Confidence 9999999994 4799999985410 01123567899999998888999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||++|||+| |+.||..... ..+.+...... ... .+..++..+.+++.+||+.+|++
T Consensus 208 i~slG~il~el~t~g~~p~~~~~~--~~~~~~~~~~~---~~~--------------~~~~~~~~~~~li~~~l~~~P~~ 268 (291)
T cd05094 208 VWSFGVILWEIFTYGKQPWFQLSN--TEVIECITQGR---VLE--------------RPRVCPKEVYDIMLGCWQREPQQ 268 (291)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHhCCC---CCC--------------CCccCCHHHHHHHHHHcccChhh
Confidence 9999999999999 9999865321 11222211111 000 01123456789999999999999
Q ss_pred CCCHHHHHHHHHHhHHH
Q 040540 644 RMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~ 660 (669)
||++.+|+++|+++...
T Consensus 269 Rpt~~~v~~~l~~~~~~ 285 (291)
T cd05094 269 RLNIKEIYKILHALGKA 285 (291)
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999998654
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-25 Score=230.56 Aligned_cols=189 Identities=20% Similarity=0.354 Sum_probs=144.5
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC-----------------------------
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----------------------------- 497 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----------------------------- 497 (669)
.+..|+.+++.+ +|+|+++++++|......++||||+++|+|.++++...
T Consensus 87 ~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
T cd05106 87 ALMSELKILSHLGQHKNIVNLLGACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKY 166 (374)
T ss_pred HHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhccc
Confidence 456789999988 89999999999999999999999999999999986421
Q ss_pred ----------------------------------------CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc
Q 040540 498 ----------------------------------------YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV 537 (669)
Q Consensus 498 ----------------------------------------~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~ 537 (669)
..+++....+|+.|+++|++|||. .+++|||+|+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~----~giiHrDLkp~N 242 (374)
T cd05106 167 IRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLAS----KNCIHRDVAARN 242 (374)
T ss_pred ccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHH----CCEEeccCchhe
Confidence 236777889999999999999994 489999999541
Q ss_pred c-----------------------c----cccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCCCcCCCCC
Q 040540 538 T-----------------------Q----TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGE 589 (669)
Q Consensus 538 ~-----------------------~----~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~ 589 (669)
. . ....++..|||||++.+..++.++|||||||++|||++ |+.||.......
T Consensus 243 il~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~ 322 (374)
T cd05106 243 VLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS 322 (374)
T ss_pred EEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH
Confidence 0 0 01123457999999988889999999999999999997 999987532211
Q ss_pred ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 590 MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
.+...+....+... +...+.++.+++.+||+.||++||++.+|+++|+++.
T Consensus 323 -~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~ 373 (374)
T cd05106 323 -KFYKMVKRGYQMSR-----------------PDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL 373 (374)
T ss_pred -HHHHHHHcccCccC-----------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence 11111111111100 1112346789999999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-25 Score=222.61 Aligned_cols=187 Identities=22% Similarity=0.462 Sum_probs=147.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHHhH
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMIDV 512 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~~i 512 (669)
.+.+|+..+..++|+|++++++++......+++|||+++|+|.+++.... ..+++.....++.++
T Consensus 54 ~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 133 (283)
T cd05048 54 EFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQI 133 (283)
T ss_pred HHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHH
Confidence 46678999999999999999999988888899999999999999997531 347788899999999
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDV 565 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv 565 (669)
++|+.|||. .+++|+|+++... .....+++.|+|||.+....++.++||
T Consensus 134 ~~al~~lH~----~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv 209 (283)
T cd05048 134 AAGMEYLSS----HHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDI 209 (283)
T ss_pred HHHHHHHHh----CCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhH
Confidence 999999995 4799999985310 011235678999999988889999999
Q ss_pred hhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 566 YSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 566 ~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|||||++|||+| |..||..... ..+...+...... +.+..++..+.+++.+||+.||++|
T Consensus 210 ~slG~il~el~~~g~~p~~~~~~--~~~~~~i~~~~~~-----------------~~~~~~~~~~~~l~~~c~~~~p~~R 270 (283)
T cd05048 210 WSFGVVLWEIFSYGLQPYYGFSN--QEVIEMIRSRQLL-----------------PCPEDCPARVYALMIECWNEIPARR 270 (283)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHcCCcC-----------------CCcccCCHHHHHHHHHHccCChhhC
Confidence 999999999998 9999875332 1222222211100 1123445678899999999999999
Q ss_pred CCHHHHHHHHHHh
Q 040540 645 MHMTDAAAKLKKI 657 (669)
Q Consensus 645 ps~~~v~~~l~~~ 657 (669)
|++.||.+.|+.+
T Consensus 271 p~~~~i~~~l~~~ 283 (283)
T cd05048 271 PRFKDIHTRLRSW 283 (283)
T ss_pred cCHHHHHHHHhcC
Confidence 9999999999753
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-25 Score=220.81 Aligned_cols=182 Identities=20% Similarity=0.312 Sum_probs=141.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|...++.++|+|+++++++|......++||||+++|+|..++++....+++..+..++.|+++|++|||+ .+
T Consensus 62 ~~~~~~~~~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~----~~ 137 (274)
T cd05076 62 AFFETASLMSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLED----KN 137 (274)
T ss_pred HHHHHHHHHhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHc----CC
Confidence 46667888899999999999999999889999999999999999997655678999999999999999999994 47
Q ss_pred eeecCCCCcccc----------------------------cccccccccCccccccC-CCcCccccchhhHHHHHHH-Hh
Q 040540 528 IIHCEGEDSVTQ----------------------------TTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMET-FT 577 (669)
Q Consensus 528 i~h~d~~~~~~~----------------------------~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el-~t 577 (669)
++|+|+|+.... ....++..|+|||.+.+ ..++.++|||||||++||+ ++
T Consensus 138 iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~ 217 (274)
T cd05076 138 LVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFD 217 (274)
T ss_pred ccCCCCCcccEEEeccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 999999854210 01125778999998865 5589999999999999999 57
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
|+.||...... ....+..... .+ +......+.+++.+||+.+|++||+|.+|++.|
T Consensus 218 g~~p~~~~~~~--~~~~~~~~~~----------~~---------~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L 273 (274)
T cd05076 218 GEVPLKERTPS--EKERFYEKKH----------RL---------PEPSCKELATLISQCLTYEPTQRPSFRTILRDL 273 (274)
T ss_pred CCCCccccChH--HHHHHHHhcc----------CC---------CCCCChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence 89998653221 1111111110 00 001123578999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=218.18 Aligned_cols=185 Identities=23% Similarity=0.354 Sum_probs=144.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..++.++|||++++++++......+++|||+++|+|.++++.....+++..+..++.+++.|++|||+ .
T Consensus 44 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~----~ 119 (256)
T cd05114 44 EDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLER----N 119 (256)
T ss_pred HHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 356779999999999999999999998889999999999999999998655568999999999999999999995 4
Q ss_pred CeeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+++... .....++..|+|||+.....++.++||||||+++|||++ |+
T Consensus 120 ~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~ 199 (256)
T cd05114 120 SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGK 199 (256)
T ss_pred CccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCC
Confidence 799999885410 001123457999999988889999999999999999999 89
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
.||.... .......+...... .. +......+.+++.+||+.+|++||+|.|+++.|
T Consensus 200 ~p~~~~~--~~~~~~~i~~~~~~-----~~------------~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l 255 (256)
T cd05114 200 MPFEKKS--NYEVVEMISRGFRL-----YR------------PKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI 255 (256)
T ss_pred CCCCCCC--HHHHHHHHHCCCCC-----CC------------CCCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 9986532 11222222221100 00 111234578999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-25 Score=230.03 Aligned_cols=188 Identities=21% Similarity=0.322 Sum_probs=144.4
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC-----------------------------
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----------------------------- 497 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----------------------------- 497 (669)
.+..|+.++..+ +|||+++++++|......++||||+++|+|.++++...
T Consensus 84 ~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (375)
T cd05104 84 ALMSELKVLSYLGNHINIVNLLGACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCD 163 (375)
T ss_pred HHHHHHHHHHHhcCCcceeeeeeeeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccch
Confidence 466789999988 89999999999999999999999999999999986421
Q ss_pred ---------------------------------------------CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecC
Q 040540 498 ---------------------------------------------YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE 532 (669)
Q Consensus 498 ---------------------------------------------~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d 532 (669)
..+++....+++.++++|++|||. .+++|+|
T Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~----~~ivH~D 239 (375)
T cd05104 164 SLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLAS----KNCIHRD 239 (375)
T ss_pred hhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH----CCeeccC
Confidence 246788889999999999999995 4799999
Q ss_pred CCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCCCc
Q 040540 533 GEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDE 584 (669)
Q Consensus 533 ~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~~~ 584 (669)
+|+... .....++..|+|||+..+..++.++|||||||++|||+| |..||..
T Consensus 240 lkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~ 319 (375)
T cd05104 240 LAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPG 319 (375)
T ss_pred CchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCC
Confidence 995410 000113457999999988889999999999999999998 8888865
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
.... .....++....... .+...+.++.+++.+||+.||++||+|.||+++|++.
T Consensus 320 ~~~~-~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~ 374 (375)
T cd05104 320 MPVD-SKFYKMIKEGYRML-----------------SPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ 374 (375)
T ss_pred CCch-HHHHHHHHhCccCC-----------------CCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence 3221 12223332221100 0111234678999999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-26 Score=246.39 Aligned_cols=362 Identities=29% Similarity=0.430 Sum_probs=232.6
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.||++.|.++ ..|..+..+.+|+.|+++.|.+. ..|.+..++++|++|+|.+|.+. .+|..+..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4889999988885 67777888999999999999987 67788899999999999999987 789999999999999999
Q ss_pred ccCccccCCcccCCCCCCC-------------------eeecccccccccCCcccCCCCCCCEEEcccCCCcccCCcccc
Q 040540 132 YNNFTGPIPNSLFNLSRLE-------------------MLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG 192 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~-------------------~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~ 192 (669)
.|+|. .+|..+..++.+. .+++..|.+.+.++..+..++. .|+|+.|++... .+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls 196 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLS 196 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhh
Confidence 99986 6665555444444 4444555555556666666655 577777776511 122
Q ss_pred CCC--------------------CCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecc
Q 040540 193 SLQ--------------------NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252 (669)
Q Consensus 193 ~l~--------------------~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls 252 (669)
.+. +|+.|+.++|.++...+ -..-.+|+++++++|.++ .+|+++. .+.+|+.++..
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n 272 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNAN 272 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHH-hcccceEeccc
Confidence 222 23333444444432111 112345666666666665 4565555 46666666666
Q ss_pred cCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCc---------------cc---
Q 040540 253 TNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD---------------QW--- 314 (669)
Q Consensus 253 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~---------------~~--- 314 (669)
+|++ ..+|..+...++|+.++..+|.+. .+|.....+++|++|+|..|++...+.... ..
T Consensus 273 ~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 273 HNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred chhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 6666 345555556666666666666655 355556667778888887777765443110 00
Q ss_pred -----------------------ccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCcc
Q 040540 315 -----------------------SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTS 371 (669)
Q Consensus 315 -----------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~ 371 (669)
..++.+.+..+|+.|+|++|++.......+ ..+..|+.|++++|+++ .+|.+
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhh-hhhHH
Confidence 112234455666666666666654322222 23455666666666666 45566
Q ss_pred ccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCc
Q 040540 372 IGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNK 435 (669)
Q Consensus 372 ~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~ 435 (669)
+..+..|++|..-+|.+. ..| .+..++.|+.+|+|.|+++...-+.-...++|++|+++||.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 666666666666666655 455 67778888888888888875432222223788888888886
|
|
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-25 Score=204.29 Aligned_cols=182 Identities=25% Similarity=0.294 Sum_probs=147.9
Q ss_pred chhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 450 DSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 450 ~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
..|+.+++++ .||+|+.+.+.+..+.+.++|+|.|+.|.|+++|.+ .-.+++.+..+|++++..|++|+|. ..|
T Consensus 70 ~~Ev~ILRqv~GHP~II~l~D~yes~sF~FlVFdl~prGELFDyLts-~VtlSEK~tR~iMrqlfegVeylHa----~~I 144 (411)
T KOG0599|consen 70 RQEISILRQVMGHPYIIDLQDVYESDAFVFLVFDLMPRGELFDYLTS-KVTLSEKETRRIMRQLFEGVEYLHA----RNI 144 (411)
T ss_pred HHHHHHHHHhcCCCcEEEeeeeccCcchhhhhhhhcccchHHHHhhh-heeecHHHHHHHHHHHHHHHHHHHH----hhh
Confidence 4588888877 699999999999999999999999999999999985 4568999999999999999999994 579
Q ss_pred eecCCCCc------------------------ccccccccccccCccccccC------CCcCccccchhhHHHHHHHHhC
Q 040540 529 IHCEGEDS------------------------VTQTTTMATIGYMAPEYGSE------GIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 529 ~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+|||+|+. ......+|||+|.|||.+.. ..|+..+|.||.|||+|-++.|
T Consensus 145 VHRDLKpENILlddn~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaG 224 (411)
T KOG0599|consen 145 VHRDLKPENILLDDNMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAG 224 (411)
T ss_pred hhcccChhheeeccccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcC
Confidence 99999953 11223469999999998754 3478899999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.+||... .+..+.+.+.++. . ..+.+.|++...++.+++.+|++.||.+|-|++|+++
T Consensus 225 cpPFwHR--kQmlMLR~ImeGk----y----------qF~speWadis~~~KdLIsrlLqVdp~~Ritake~La 282 (411)
T KOG0599|consen 225 CPPFWHR--KQMLMLRMIMEGK----Y----------QFRSPEWADISATVKDLISRLLQVDPTKRITAKEALA 282 (411)
T ss_pred CCchhHH--HHHHHHHHHHhcc----c----------ccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence 9999762 2222222221111 0 1234568899999999999999999999999999976
|
|
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-25 Score=223.99 Aligned_cols=194 Identities=23% Similarity=0.381 Sum_probs=143.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC------------------CccCHHHHHHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN------------------YFLDILERLNI 508 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~------------------~~l~~~~~~~i 508 (669)
..+..|+.++.+++|+|++++++++......++||||+++|+|.+++.... ..+++....++
T Consensus 64 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 143 (304)
T cd05096 64 NDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHV 143 (304)
T ss_pred HHHHHHHHHHhhcCCCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHH
Confidence 357789999999999999999999988888999999999999999986421 23677888999
Q ss_pred HHhHHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCc
Q 040540 509 MIDVGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSA 561 (669)
Q Consensus 509 ~~~i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~ 561 (669)
+.|+++|+.|||. .+++|+|+|+... .....++..|||||+.....++.
T Consensus 144 ~~~i~~al~~lH~----~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~ 219 (304)
T cd05096 144 ALQIASGMKYLSS----LNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTT 219 (304)
T ss_pred HHHHHHHHHHHHH----CCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCc
Confidence 9999999999995 4799999995410 00112467899999998888999
Q ss_pred cccchhhHHHHHHHHh--CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 562 KCDVYSYGVLLMETFT--RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 562 ~~Dv~s~Gvil~el~t--g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
++|||||||++|||++ |..||.... ...+...+............ .. .+..++..+.+++.+||+.
T Consensus 220 ~~Dv~slG~~l~el~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~li~~cl~~ 287 (304)
T cd05096 220 ASDVWAFGVTLWEILMLCKEQPYGELT--DEQVIENAGEFFRDQGRQVY-LF---------RPPPCPQGLYELMLQCWSR 287 (304)
T ss_pred hhhhHHHHHHHHHHHHccCCCCCCcCC--HHHHHHHHHHHhhhcccccc-cc---------CCCCCCHHHHHHHHHHccC
Confidence 9999999999999987 456765432 12222222222111100000 00 0112345678999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q 040540 640 SPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 640 ~P~~Rps~~~v~~~l~~ 656 (669)
||++||||.+|.+.|++
T Consensus 288 ~p~~RPs~~~i~~~l~~ 304 (304)
T cd05096 288 DCRERPSFSDIHAFLTE 304 (304)
T ss_pred CchhCcCHHHHHHHHhC
Confidence 99999999999988863
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-25 Score=222.22 Aligned_cols=187 Identities=21% Similarity=0.291 Sum_probs=150.6
Q ss_pred ccccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 445 ~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+.+|..|++++..++||++|+++++|...+..+|..|||+||-...++-+-+..+...+..-+.++++.||.|||
T Consensus 72 ELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LH---- 147 (1187)
T KOG0579|consen 72 ELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLH---- 147 (1187)
T ss_pred HHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHh----
Confidence 4568889999999999999999999999999999999999999999998877788999999999999999999999
Q ss_pred CCCeeecCCCCc-------------------------ccccccccccccCcccccc-----CCCcCccccchhhHHHHHH
Q 040540 525 SAPIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLME 574 (669)
Q Consensus 525 ~~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~e 574 (669)
+..|||||+|.. ....+++|||+|||||+.. +..|+.++|||||||+|.|
T Consensus 148 s~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIE 227 (1187)
T KOG0579|consen 148 SQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIE 227 (1187)
T ss_pred hcchhhhhccccceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHH
Confidence 458999999843 1234567999999999764 4679999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..+.+|..+... ..+.--+...-| |.+.. +......+.++..+|+.+||..||++.++++
T Consensus 228 MAqiEPPHhelnp--MRVllKiaKSeP--------PTLlq-------PS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~ 288 (1187)
T KOG0579|consen 228 MAQIEPPHHELNP--MRVLLKIAKSEP--------PTLLQ-------PSHWSRSFSDFLKRCLVKNPRNRPPAAQLLK 288 (1187)
T ss_pred HhccCCCccccch--HHHHHHHhhcCC--------CcccC-------cchhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence 9999999765321 111111111111 11221 3455566789999999999999999999875
|
|
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-25 Score=221.02 Aligned_cols=189 Identities=19% Similarity=0.291 Sum_probs=144.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..+.|+|++++++++.. ...++++||+++|+|.+++......+++.....++.|+++|+.|+|. .+
T Consensus 55 ~~~~~~~~l~~l~h~~iv~~~~~~~~-~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~----~~ 129 (279)
T cd05111 55 EITDHMLAMGSLDHAYIVRLLGICPG-ASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEE----HR 129 (279)
T ss_pred HHHHHHHHHhcCCCCCcceEEEEECC-CccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45566777888999999999998764 44678999999999999998766678999999999999999999995 47
Q ss_pred eeecCCCCcc--------------c-------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 528 IIHCEGEDSV--------------T-------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 528 i~h~d~~~~~--------------~-------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
++|+|+|+.. . .....|+..|+|||+.....++.++|||||||++||++| |+
T Consensus 130 iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~ 209 (279)
T cd05111 130 MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGA 209 (279)
T ss_pred EeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCC
Confidence 9999998531 0 011135678999999988889999999999999999998 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||..... ..+.+.+....... . +..+...+.+++.+||..+|++|||+.|+++.++.+.+
T Consensus 210 ~p~~~~~~--~~~~~~~~~~~~~~-----~------------~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~ 270 (279)
T cd05111 210 EPYAGMRP--HEVPDLLEKGERLA-----Q------------PQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMAR 270 (279)
T ss_pred CCCCCCCH--HHHHHHHHCCCcCC-----C------------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence 99865321 11222222111100 0 11123356789999999999999999999999988765
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 271 ~ 271 (279)
T cd05111 271 D 271 (279)
T ss_pred C
Confidence 3
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=218.76 Aligned_cols=191 Identities=25% Similarity=0.426 Sum_probs=148.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC------------CccCHHHHHHHHHhHHh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN------------YFLDILERLNIMIDVGS 514 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~------------~~l~~~~~~~i~~~i~~ 514 (669)
..+..|+..+.+++|++++++++++......+++|||+++++|.++++..+ ..+++.....++.+++.
T Consensus 52 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~ 131 (288)
T cd05093 52 KDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAA 131 (288)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 356779999999999999999999998899999999999999999997432 24889999999999999
Q ss_pred hhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchh
Q 040540 515 ALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYS 567 (669)
Q Consensus 515 ~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s 567 (669)
|++|||+ .+++|||+++... .....++..|+|||+..+..++.++||||
T Consensus 132 aL~~lH~----~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiws 207 (288)
T cd05093 132 GMVYLAS----QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWS 207 (288)
T ss_pred HHHHHHh----CCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHH
Confidence 9999995 4799999985310 00112366899999998888999999999
Q ss_pred hHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 568 YGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 568 ~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
|||++|||+| |+.||...... .....+....... . +...+..+.+++.+||+.+|.+|||
T Consensus 208 lG~il~~l~t~g~~p~~~~~~~--~~~~~i~~~~~~~--------~---------~~~~~~~l~~li~~~l~~~p~~Rpt 268 (288)
T cd05093 208 LGVVLWEIFTYGKQPWYQLSNN--EVIECITQGRVLQ--------R---------PRTCPKEVYDLMLGCWQREPHMRLN 268 (288)
T ss_pred HHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCcCC--------C---------CCCCCHHHHHHHHHHccCChhhCCC
Confidence 9999999999 89898653211 1112111111000 0 1112345789999999999999999
Q ss_pred HHHHHHHHHHhHHH
Q 040540 647 MTDAAAKLKKIKVK 660 (669)
Q Consensus 647 ~~~v~~~l~~~~~~ 660 (669)
+.||.+.|+++..+
T Consensus 269 ~~~v~~~l~~~~~~ 282 (288)
T cd05093 269 IKEIHSLLQNLAKA 282 (288)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998754
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=224.89 Aligned_cols=200 Identities=19% Similarity=0.214 Sum_probs=145.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|+|++++++++...+..++||||+++|+|.+++... ..+++.....++.++++|+.|||+. .
T Consensus 48 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~ 123 (331)
T cd06649 48 NQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEA-KRIPEEILGKVSIAVLRGLAYLREK---H 123 (331)
T ss_pred HHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhhc---C
Confidence 35677999999999999999999998888899999999999999999753 4578888999999999999999953 3
Q ss_pred CeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 527 PIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 527 ~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+++|+|+|+.. ......||..|+|||++.+..++.++|||||||++|||+||+.||.
T Consensus 124 ~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~ 203 (331)
T cd06649 124 QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIP 203 (331)
T ss_pred CEEcCCCChhhEEEcCCCcEEEccCcccccccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 69999998531 0112348899999999988889999999999999999999999996
Q ss_pred cCCCCCccHHHHHHHhCCCC-------cc------------------------ccccccccchhhhhhhhHHHHHHHHHH
Q 040540 584 EMFTGEMSLRRWVKESLPHR-------LS------------------------EVVDTNLVREEQAFSAKMDCLLSIMDL 632 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~-------~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 632 (669)
.... ..+...+....... .. +..+.......+.. .......++.++
T Consensus 204 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l 280 (331)
T cd06649 204 PPDA--KELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKL-PNGVFTPDFQEF 280 (331)
T ss_pred CCCH--HHHHHHhcccccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCC-CCccccHHHHHH
Confidence 5321 11111111100000 00 00000000000000 011244578999
Q ss_pred HhhcccCCCCCCCCHHHHHHH
Q 040540 633 ALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 633 ~~~c~~~~P~~Rps~~~v~~~ 653 (669)
+.+||+.||++|||++|+++-
T Consensus 281 i~~~L~~~P~~Rpt~~ell~h 301 (331)
T cd06649 281 VNKCLIKNPAERADLKMLMNH 301 (331)
T ss_pred HHHHccCCcccCCCHHHHhcC
Confidence 999999999999999999763
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=216.76 Aligned_cols=182 Identities=20% Similarity=0.329 Sum_probs=140.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|...+..+.|+|++++++.+..+...++||||+++|+|.++++..+..+++..+..++.|+++|++|||. .+
T Consensus 45 ~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~----~~ 120 (258)
T cd05078 45 SFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLED----KG 120 (258)
T ss_pred HHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45678888999999999999999998888999999999999999998766678999999999999999999994 48
Q ss_pred eeecCCCCccc-----------------------------ccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 528 IIHCEGEDSVT-----------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 528 i~h~d~~~~~~-----------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
++|||+|+... .....++..|+|||++.+ ..++.++|||||||++|||++
T Consensus 121 iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~ 200 (258)
T cd05078 121 LTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFS 200 (258)
T ss_pred eecCCCccceEEEecccccccCCCceEEecccccccccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHc
Confidence 99999985410 001236788999999876 457899999999999999999
Q ss_pred CC-CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 578 RK-RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 578 g~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
|. .|+..... .......... . .+ +.....++.+++.+||+.+|++|||+++++++|
T Consensus 201 g~~~~~~~~~~--~~~~~~~~~~--~--------~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l 257 (258)
T cd05078 201 GGDKPLSALDS--QKKLQFYEDR--H--------QL---------PAPKWTELANLINQCMDYEPDFRPSFRAIIRDL 257 (258)
T ss_pred CCCCChhhccH--HHHHHHHHcc--c--------cC---------CCCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 95 55443211 1111111100 0 00 111224578999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=215.45 Aligned_cols=188 Identities=22% Similarity=0.350 Sum_probs=145.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+..+..++|+|++++++.|......+++|||+++++|.+++... ...+++..+..++.|+++|++|||.
T Consensus 47 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~---- 122 (263)
T cd05052 47 EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEK---- 122 (263)
T ss_pred HHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 35667899999999999999999998888889999999999999999753 3458999999999999999999994
Q ss_pred CCeeecCCCCccc--------------------c------cccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSVT--------------------Q------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~~--------------------~------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|+|+++... . ....++..|+|||+..+..++.++|||||||++|||+| |
T Consensus 123 ~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g 202 (263)
T cd05052 123 KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 202 (263)
T ss_pred CCEeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCC
Confidence 4799999985410 0 00113567999999988889999999999999999998 8
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
..|+..... ...........+. . .+...+..+.+++.+||+.+|++||+|.+++++|+.+
T Consensus 203 ~~p~~~~~~--~~~~~~~~~~~~~--------~---------~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 262 (263)
T cd05052 203 MSPYPGIDL--SQVYELLEKGYRM--------E---------RPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred CCCCCCCCH--HHHHHHHHCCCCC--------C---------CCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence 999865221 1111111111100 0 1122345688999999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=215.20 Aligned_cols=182 Identities=20% Similarity=0.327 Sum_probs=139.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......+++|||+++|+|..+++.....+++..+..++.|+++|++|||. .+
T Consensus 50 ~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~----~~ 125 (262)
T cd05077 50 AFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLED----KD 125 (262)
T ss_pred HHHHHHHHHHhCCCCCEeeEEEEEecCCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhh----CC
Confidence 45567888899999999999999998888899999999999999987656678999999999999999999994 57
Q ss_pred eeecCCCCccc----------------------------ccccccccccCcccccc-CCCcCccccchhhHHHHHHHH-h
Q 040540 528 IIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGS-EGIVSAKCDVYSYGVLLMETF-T 577 (669)
Q Consensus 528 i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~s~Gvil~el~-t 577 (669)
++|+|+++... .....|+..|+|||... +..++.++|||||||++|||+ +
T Consensus 126 ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~ 205 (262)
T cd05077 126 LVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYN 205 (262)
T ss_pred eECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhC
Confidence 99999985410 00123677899999886 456899999999999999997 5
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
|+.|+....... ... ... .. .... ......+.+++.+||+.||.+||++.++++.|
T Consensus 206 ~~~p~~~~~~~~--~~~-~~~---~~-~~~~--------------~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~ 261 (262)
T cd05077 206 GEIPLKDKTLAE--KER-FYE---GQ-CMLV--------------TPSCKELADLMTHCMNYDPNQRPFFRAIMRDI 261 (262)
T ss_pred CCCCCCCcchhH--HHH-HHh---cC-ccCC--------------CCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence 888875421111 110 000 00 0000 01124578999999999999999999998865
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-25 Score=222.74 Aligned_cols=183 Identities=25% Similarity=0.269 Sum_probs=148.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+++..|+..+..++|||.+.+-|+|-.....|+|||||- |+-.+++.-++.++.+.+...|..|...||.||| +.
T Consensus 71 qDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYCl-GSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLH----S~ 145 (948)
T KOG0577|consen 71 QDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH----SH 145 (948)
T ss_pred HHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHh-ccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH----Hh
Confidence 456678999999999999999999999999999999997 7999999888889999999999999999999999 45
Q ss_pred CeeecCCCCc---------------------ccccccccccccCccccc---cCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDS---------------------VTQTTTMATIGYMAPEYG---SEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~---------------------~~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+.||||+|.. ....+++|||.|||||++ +.+.|+.|+||||+||+..|+..+++|+
T Consensus 146 ~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPl 225 (948)
T KOG0577|consen 146 NRIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 225 (948)
T ss_pred hHHhhhccccceEecCCCeeeeccccchhhcCchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCc
Confidence 7899999943 234567899999999986 4588999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
..|.. ....-.+...-+ |.+. ..+.+..+..|+..|+++-|.+|||.+++++
T Consensus 226 FnMNA--MSALYHIAQNes--------PtLq--------s~eWS~~F~~Fvd~CLqKipqeRptse~ll~ 277 (948)
T KOG0577|consen 226 FNMNA--MSALYHIAQNES--------PTLQ--------SNEWSDYFRNFVDSCLQKIPQERPTSEELLK 277 (948)
T ss_pred cCchH--HHHHHHHHhcCC--------CCCC--------CchhHHHHHHHHHHHHhhCcccCCcHHHHhh
Confidence 87532 111111111111 1111 2355666789999999999999999988775
|
|
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-24 Score=228.19 Aligned_cols=190 Identities=20% Similarity=0.371 Sum_probs=146.0
Q ss_pred ccCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCC----------------------------
Q 040540 447 RSFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------------------- 497 (669)
Q Consensus 447 ~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------------------- 497 (669)
+.+..|+.++..+. |||+++++++|......++|||||++|+|.+++....
T Consensus 85 ~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (400)
T cd05105 85 QALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTR 164 (400)
T ss_pred HHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCccccccc
Confidence 35677999999996 9999999999999899999999999999999886421
Q ss_pred -------------------------------------------------------------------CccCHHHHHHHHH
Q 040540 498 -------------------------------------------------------------------YFLDILERLNIMI 510 (669)
Q Consensus 498 -------------------------------------------------------------------~~l~~~~~~~i~~ 510 (669)
..+++.....++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 244 (400)
T cd05105 165 SYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTY 244 (400)
T ss_pred chhhhhhcccccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHH
Confidence 2367778889999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
++++|++|||. .+++|+|+|+... .....++..|+|||.+.+..++.++
T Consensus 245 qi~~aL~~LH~----~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 320 (400)
T cd05105 245 QVARGMEFLAS----KNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLS 320 (400)
T ss_pred HHHHHHHHHHh----CCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchh
Confidence 99999999995 4799999985310 0112356789999999888899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||++ |..||.....+. .+...+...... +.+...+..+.+++.+||+.||+
T Consensus 321 DiwSlGvil~ellt~g~~P~~~~~~~~-~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~ 382 (400)
T cd05105 321 DVWSYGILLWEIFSLGGTPYPGMIVDS-TFYNKIKSGYRM-----------------AKPDHATQEVYDIMVKCWNSEPE 382 (400)
T ss_pred hHHHHHHHHHHHHHCCCCCCcccchhH-HHHHHHhcCCCC-----------------CCCccCCHHHHHHHHHHCccCHh
Confidence 99999999999997 899987532211 111111111100 01223445688999999999999
Q ss_pred CCCCHHHHHHHHHHhH
Q 040540 643 KRMHMTDAAAKLKKIK 658 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~ 658 (669)
+||++.+|+++|+++.
T Consensus 383 ~RPt~~~l~~~l~~l~ 398 (400)
T cd05105 383 KRPSFLHLSDIVESLL 398 (400)
T ss_pred HCcCHHHHHHHHHHHc
Confidence 9999999999999764
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=216.03 Aligned_cols=188 Identities=22% Similarity=0.419 Sum_probs=146.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++.+++...+..++||||+++++|.+++.+....+++.++..++.++++|++|+|. .
T Consensus 51 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~----~ 126 (268)
T cd05063 51 QDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSD----M 126 (268)
T ss_pred HHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 346678889999999999999999998888999999999999999998765678999999999999999999994 4
Q ss_pred CeeecCCCCccc-----------------------c---cc--cccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT-----------------------Q---TT--TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------~---~~--~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++... . .. ...+..|+|||+.....++.++|||||||++||++|
T Consensus 127 ~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~ 206 (268)
T cd05063 127 NYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSF 206 (268)
T ss_pred CeeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhC
Confidence 799999985410 0 00 012346999999988889999999999999999998
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+....+ .+.+.+....+.+++.+||+.+|++||+|.+|++.|+++
T Consensus 207 g~~p~~~~~~--~~~~~~i~~~~~-----------------~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~ 267 (268)
T cd05063 207 GERPYWDMSN--HEVMKAINDGFR-----------------LPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267 (268)
T ss_pred CCCCCCcCCH--HHHHHHHhcCCC-----------------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 9999865321 112222111100 011223345678999999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-24 Score=215.30 Aligned_cols=192 Identities=20% Similarity=0.254 Sum_probs=148.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
..+..|+..++.++|+|++++++++...+..++++||+++|+|.+++.. ....+++.....++.++++|+.|||.
T Consensus 47 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~-- 124 (267)
T cd08228 47 QDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHS-- 124 (267)
T ss_pred HHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhh--
Confidence 3466789999999999999999999888888999999999999998853 23457888899999999999999994
Q ss_pred CCCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 524 SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......|+..|+|||...+..++.++||||||+++|||+||
T Consensus 125 --~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g 202 (267)
T cd08228 125 --RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 202 (267)
T ss_pred --CCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcC
Confidence 489999998431 00112478899999999888889999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.........+...+... . .+... .......+.+++.+||..+|++||++.+|++.++.++
T Consensus 203 ~~p~~~~~~~~~~~~~~~~~~---~-----~~~~~--------~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~ 266 (267)
T cd08228 203 QSPFYGDKMNLFSLCQKIEQC---D-----YPPLP--------TEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH 266 (267)
T ss_pred CCCCccccccHHHHHHHHhcC---C-----CCCCC--------hhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence 999864322211122211110 0 01110 1234456889999999999999999999999998864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-24 Score=214.40 Aligned_cols=187 Identities=18% Similarity=0.374 Sum_probs=144.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++.|.. ...++||||+++|+|.+++......+++..+.+++.++++|++|+|. .
T Consensus 40 ~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~----~ 114 (257)
T cd05115 40 DEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEG----K 114 (257)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh----c
Confidence 356778999999999999999998764 46689999999999999998656678999999999999999999995 4
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++... .....++..|+|||+.....++.++|||||||++||+++
T Consensus 115 ~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~ 194 (257)
T cd05115 115 NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSY 194 (257)
T ss_pred CeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcC
Confidence 799999985410 000112467999999888889999999999999999996
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ......+....+.. .+..+..++.+++.+||..+|++||++.+|.+.|+.+
T Consensus 195 g~~p~~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~ 255 (257)
T cd05115 195 GQKPYKKMKG--PEVMSFIEQGKRLD-----------------CPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY 255 (257)
T ss_pred CCCCcCcCCH--HHHHHHHHCCCCCC-----------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence 9999875321 11222222111100 0122345678999999999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-24 Score=217.81 Aligned_cols=196 Identities=23% Similarity=0.381 Sum_probs=149.1
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+..+.++ +|||++++++++......++++||+++|+|.+++++.. ..+++.....++.
T Consensus 47 ~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 126 (297)
T cd05089 47 RDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFAS 126 (297)
T ss_pred HHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHH
Confidence 4567788888888 79999999999988888999999999999999997522 2478889999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCccc---------------c-------cc--cccccccCccccccCCCcCccccch
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSVT---------------Q-------TT--TMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------~-------~~--~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
|++.|++|||. .+++|+|+|+... . .. ...+..|+|||+.....++.++|||
T Consensus 127 qi~~al~~lH~----~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw 202 (297)
T cd05089 127 DVATGMQYLSE----KQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVW 202 (297)
T ss_pred HHHHHHHHHHH----CCcccCcCCcceEEECCCCeEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHH
Confidence 99999999994 4799999985410 0 00 1124469999999888899999999
Q ss_pred hhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
||||++|||+| |+.||..... ....... +.... .. .+...+..+.+++.+||+.+|.+||
T Consensus 203 SlG~il~el~t~g~~pf~~~~~-----~~~~~~~-~~~~~----~~---------~~~~~~~~~~~li~~~l~~~p~~Rp 263 (297)
T cd05089 203 SFGVLLWEIVSLGGTPYCGMTC-----AELYEKL-PQGYR----ME---------KPRNCDDEVYELMRQCWRDRPYERP 263 (297)
T ss_pred HHHHHHHHHHcCCCCCCCCCCH-----HHHHHHH-hcCCC----CC---------CCCCCCHHHHHHHHHHcCCChhhCc
Confidence 99999999998 9999865321 1111111 11000 00 0112345678999999999999999
Q ss_pred CHHHHHHHHHHhHHHhhhhh
Q 040540 646 HMTDAAAKLKKIKVKFLDDV 665 (669)
Q Consensus 646 s~~~v~~~l~~~~~~~~~~~ 665 (669)
++.++++.|+++.++....+
T Consensus 264 ~~~~i~~~l~~~~~~~~~~~ 283 (297)
T cd05089 264 PFAQISVQLSRMLEARKAYV 283 (297)
T ss_pred CHHHHHHHHHHHHHhhcccc
Confidence 99999999999887754433
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-24 Score=214.02 Aligned_cols=188 Identities=21% Similarity=0.392 Sum_probs=147.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|+|++++++.+......+++|||+++++|.+++......+++....+++.+++.|++|||. .
T Consensus 50 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~----~ 125 (266)
T cd05033 50 LDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSE----M 125 (266)
T ss_pred HHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 356678899999999999999999988888999999999999999998765678999999999999999999994 5
Q ss_pred CeeecCCCCccc----------------------c-----cccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSVT----------------------Q-----TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------~-----~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+++|+|+++... . ....++..|+|||...+..++.++||||||+++|||++ |
T Consensus 126 ~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g 205 (266)
T cd05033 126 NYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYG 205 (266)
T ss_pred CcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccC
Confidence 799999985310 0 00123467999999988889999999999999999998 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
..||.... ...+...+...... +.+.+++..+.+++.+||+.+|++||++.||++.|+++
T Consensus 206 ~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 206 ERPYWDMS--NQDVIKAVEDGYRL-----------------PPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred CCCCCCCC--HHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 99986532 11222222211100 00122345678999999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-24 Score=214.35 Aligned_cols=188 Identities=20% Similarity=0.333 Sum_probs=145.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+..++|+|++++++.+......+++|||+++|+|.+++++. ...+++..+..++.++++|++|||.
T Consensus 46 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~---- 121 (261)
T cd05072 46 QAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER---- 121 (261)
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 45667899999999999999999998888899999999999999999753 3467888999999999999999995
Q ss_pred CCeeecCCCCcc--------------------c------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------T------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------~------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|+|+++.. . .....++..|+|||+.....++.++|||||||++|||+| |
T Consensus 122 ~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g 201 (261)
T cd05072 122 KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYG 201 (261)
T ss_pred CCeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccC
Confidence 479999998531 0 001124567999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
+.||.... ......++....+. +.....+..+.+++.+|+..+|++||++.++.+.|+++
T Consensus 202 ~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 261 (261)
T cd05072 202 KIPYPGMS--NSDVMSALQRGYRM-----------------PRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF 261 (261)
T ss_pred CCCCCCCC--HHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence 99986522 11222222211110 00112334578999999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-24 Score=223.48 Aligned_cols=190 Identities=20% Similarity=0.340 Sum_probs=145.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|+++++++|... ..++++||+++|+|.++++.....+++.....++.|+++||+|||. .
T Consensus 54 ~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~----~ 128 (316)
T cd05108 54 KEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEE----R 128 (316)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEcCC-CceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHh----c
Confidence 3566788999999999999999998764 4679999999999999998766678899999999999999999994 4
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+++|+|+|+... .....++..|+|||++.+..++.++|||||||++||++| |
T Consensus 129 ~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g 208 (316)
T cd05108 129 RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 208 (316)
T ss_pred CeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCC
Confidence 799999985310 001113567999999988889999999999999999998 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||..... ..+........ .. +.+..+...+.+++.+||+.+|++||++.+++..+.++.
T Consensus 209 ~~p~~~~~~--~~~~~~~~~~~--~~---------------~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~ 269 (316)
T cd05108 209 SKPYDGIPA--SEISSILEKGE--RL---------------PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 269 (316)
T ss_pred CCCCCCCCH--HHHHHHHhCCC--CC---------------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 999865321 11222211110 00 001122345789999999999999999999999988875
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 270 ~~ 271 (316)
T cd05108 270 RD 271 (316)
T ss_pred cC
Confidence 43
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-24 Score=216.24 Aligned_cols=187 Identities=28% Similarity=0.484 Sum_probs=145.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-------------CccCHHHHHHHHHhHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-------------YFLDILERLNIMIDVG 513 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-------------~~l~~~~~~~i~~~i~ 513 (669)
+.+..|+.++..++|+|++++++.+......+++|||+++|+|.++++..+ ..+++.....++.+++
T Consensus 53 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~ 132 (280)
T cd05049 53 KDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIA 132 (280)
T ss_pred HHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHH
Confidence 467789999999999999999999998889999999999999999997532 3467888899999999
Q ss_pred hhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccch
Q 040540 514 SALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 514 ~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
.|+.|+|. .+++|+|+++... .....++..|+|||++.+..++.++|||
T Consensus 133 ~~l~~lH~----~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~ 208 (280)
T cd05049 133 SGMVYLAS----QHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW 208 (280)
T ss_pred HHHHHHhh----CCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHH
Confidence 99999994 4799999985410 0111245679999999888899999999
Q ss_pred hhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
||||++|||++ |+.||.... ............... .+...+..+.+++.+||+.||++||
T Consensus 209 slG~il~e~~~~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~~l~~~p~~Rp 269 (280)
T cd05049 209 SFGVVLWEIFTYGKQPWYGLS--NEEVIECITQGRLLQ-----------------RPRTCPSEVYDIMLGCWKRDPQQRI 269 (280)
T ss_pred HHHHHHHHHHhcCCCCCCCCC--HHHHHHHHHcCCcCC-----------------CCCCCCHHHHHHHHHHcCCCcccCC
Confidence 99999999999 999986532 122222222111100 0112345678999999999999999
Q ss_pred CHHHHHHHHHH
Q 040540 646 HMTDAAAKLKK 656 (669)
Q Consensus 646 s~~~v~~~l~~ 656 (669)
++.||++.|++
T Consensus 270 ~~~eil~~l~~ 280 (280)
T cd05049 270 NIKDIHERLQK 280 (280)
T ss_pred CHHHHHHHhhC
Confidence 99999998863
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-24 Score=232.44 Aligned_cols=182 Identities=20% Similarity=0.196 Sum_probs=142.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|+..+..++|||++++++++...+..++||||+++|+|.++++. ...++++.+...++.+++.||+|+|.
T Consensus 111 ~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~--- 187 (478)
T PTZ00267 111 YARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHS--- 187 (478)
T ss_pred HHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 345689999999999999999999999999999999999999998864 23467888899999999999999994
Q ss_pred CCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 525 SAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+|
T Consensus 188 -~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t 266 (478)
T PTZ00267 188 -RKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLT 266 (478)
T ss_pred -CCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHh
Confidence 489999999430 0112348999999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|+.||..... ..+...+... .. ++ .+......+.+++.+||..||++||++.+++.
T Consensus 267 g~~Pf~~~~~--~~~~~~~~~~---~~----~~----------~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~ 322 (478)
T PTZ00267 267 LHRPFKGPSQ--REIMQQVLYG---KY----DP----------FPCPVSSGMKALLDPLLSKNPALRPTTQQLLH 322 (478)
T ss_pred CCCCCCCCCH--HHHHHHHHhC---CC----CC----------CCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence 9999865221 1111111110 00 00 01123346789999999999999999999865
|
|
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-24 Score=196.41 Aligned_cols=193 Identities=18% Similarity=0.236 Sum_probs=147.8
Q ss_pred cCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
...+|++.-++.+|||++++++++... .+.|++++|...|+|.+.+.. ++..+++.+.+.|+.++.+||+++
T Consensus 64 ~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~l 143 (302)
T KOG2345|consen 64 EALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEAL 143 (302)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999987543 357999999999999999875 455899999999999999999999
Q ss_pred hcCCCCCCeeecCCCCccc----------------------------------ccccccccccCccccccC---CCcCcc
Q 040540 520 RHGHSSAPIIHCEGEDSVT----------------------------------QTTTMATIGYMAPEYGSE---GIVSAK 562 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~~----------------------------------~~~~~gt~~y~aPE~~~~---~~~~~~ 562 (669)
|.. .++.+|+|+|+... -....-|..|.|||.+.- ...++|
T Consensus 144 H~~--~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~er 221 (302)
T KOG2345|consen 144 HEK--EPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITER 221 (302)
T ss_pred hcc--CCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccc
Confidence 965 56899999996410 001124788999998754 346789
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
+||||+||++|+|+-|..||+.....+..++-.+. .....+|.....+..+.+++..|++.||.
T Consensus 222 tDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~----------------n~q~s~P~~~~yse~l~~lik~mlqvdP~ 285 (302)
T KOG2345|consen 222 TDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQ----------------NAQISIPNSSRYSEALHQLIKSMLQVDPN 285 (302)
T ss_pred cchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeee----------------ccccccCCCCCccHHHHHHHHHHhcCCcc
Confidence 99999999999999999999865443322211111 10111112223566789999999999999
Q ss_pred CCCCHHHHHHHHHHhH
Q 040540 643 KRMHMTDAAAKLKKIK 658 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~ 658 (669)
+||+..+++..++++.
T Consensus 286 qRP~i~~ll~~~d~Li 301 (302)
T KOG2345|consen 286 QRPTIPELLSKLDDLI 301 (302)
T ss_pred cCCCHHHHHHHHHhhc
Confidence 9999999999888753
|
|
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-24 Score=212.13 Aligned_cols=186 Identities=20% Similarity=0.325 Sum_probs=144.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+.+++|||+++++++|......+++|||+++|+|.+++......+++....+++.+++.|++|||+ .
T Consensus 44 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~----~ 119 (256)
T cd05113 44 DEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLES----K 119 (256)
T ss_pred HHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 346779999999999999999999988888899999999999999997655578999999999999999999995 4
Q ss_pred CeeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+++... .....++..|+|||+.....++.++|||||||++|||+| |+
T Consensus 120 ~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~ 199 (256)
T cd05113 120 QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGK 199 (256)
T ss_pred CeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCC
Confidence 799999885310 001124467999999988889999999999999999999 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
.||..... ......+....... .+......+.+++.+||+.+|.+||++.++++.|+
T Consensus 200 ~p~~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~ 256 (256)
T cd05113 200 MPYERFNN--SETVEKVSQGLRLY-----------------RPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE 256 (256)
T ss_pred CCcCcCCH--HHHHHHHhcCCCCC-----------------CCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence 99865321 11222211111000 01112356789999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-24 Score=215.69 Aligned_cols=180 Identities=20% Similarity=0.278 Sum_probs=143.4
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
-...|-..|..+ .||.+++++..+++....|+|+||+++|+|.++|++. ..+++....-++.+|..|++||| +.
T Consensus 119 YV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~~i~K~-Gsfde~caR~YAAeIldAleylH----~~ 193 (604)
T KOG0592|consen 119 YVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYAPNGDLLDLIKKY-GSFDETCARFYAAEILDALEYLH----SN 193 (604)
T ss_pred hhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEecCCCcHHHHHHHh-CcchHHHHHHHHHHHHHHHHHHH----hc
Confidence 344577778888 8999999999999999999999999999999999865 45788888889999999999999 46
Q ss_pred CeeecCCCCc------------------------------------cc--ccccccccccCccccccCCCcCccccchhh
Q 040540 527 PIIHCEGEDS------------------------------------VT--QTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 527 ~i~h~d~~~~------------------------------------~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
+|||||+|+. .. ..+++||..|++||++.++..+..+|+|+|
T Consensus 194 GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAl 273 (604)
T KOG0592|consen 194 GIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWAL 273 (604)
T ss_pred CceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHH
Confidence 8999999942 01 145789999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
|||+|+|+.|++||.+..+ -..++..+.- + +..+.+.++.+.+++.+.+..||.+|+|.+
T Consensus 274 GCilyQmlaG~PPFra~Ne-yliFqkI~~l----------~---------y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~ 333 (604)
T KOG0592|consen 274 GCILYQMLAGQPPFRAANE-YLIFQKIQAL----------D---------YEFPEGFPEDARDLIKKLLVRDPSDRLTSQ 333 (604)
T ss_pred HHHHHHHhcCCCCCccccH-HHHHHHHHHh----------c---------ccCCCCCCHHHHHHHHHHHccCccccccHH
Confidence 9999999999999976321 1111111110 0 112334446788999999999999999996
Q ss_pred HHHH
Q 040540 649 DAAA 652 (669)
Q Consensus 649 ~v~~ 652 (669)
+|.+
T Consensus 334 qIk~ 337 (604)
T KOG0592|consen 334 QIKA 337 (604)
T ss_pred HHhh
Confidence 6643
|
|
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-24 Score=214.57 Aligned_cols=185 Identities=22% Similarity=0.386 Sum_probs=143.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|++.++.++|+|++++++.|......++||||+++++|.+++...+..+++.....++.+++.|++|||. .+
T Consensus 39 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~----~~ 114 (252)
T cd05084 39 KFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLES----KH 114 (252)
T ss_pred HHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 46678999999999999999999998889999999999999999997655568999999999999999999994 47
Q ss_pred eeecCCCCccc--------------c---------ccc----ccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 528 IIHCEGEDSVT--------------Q---------TTT----MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 528 i~h~d~~~~~~--------------~---------~~~----~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
++|+|+++... . ... .++..|+|||.+.+..++.++|||||||++|||++ |.
T Consensus 115 i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~ 194 (252)
T cd05084 115 CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGA 194 (252)
T ss_pred ccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCC
Confidence 99999985410 0 000 11245999999988889999999999999999998 88
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
.||..... ......+....+. +.+...+..+.+++.+|++.+|++||++.+|.++|+
T Consensus 195 ~p~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 251 (252)
T cd05084 195 VPYANLSN--QQTREAIEQGVRL-----------------PCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ 251 (252)
T ss_pred CCccccCH--HHHHHHHHcCCCC-----------------CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence 88865321 1111111111000 011223456789999999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-24 Score=217.67 Aligned_cols=201 Identities=21% Similarity=0.306 Sum_probs=145.6
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+..++.++|+|+++++++|... ...+++|||+++|+|.+++... .+++.++..++.++++|++|||.
T Consensus 51 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~l~~~~~~~i~~~l~~~l~~lH~--- 125 (283)
T cd05080 51 SGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKH--KLNLAQLLLFAQQICEGMAYLHS--- 125 (283)
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHH---
Confidence 3466789999999999999999987653 4578999999999999999753 48999999999999999999995
Q ss_pred CCCeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+... .....++..|+|||......++.++|||||||++|||+
T Consensus 126 -~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~ 204 (283)
T cd05080 126 -QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELL 204 (283)
T ss_pred -CCeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHH
Confidence 4799999995410 00112455699999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhC-CCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESL-PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
||+.|+.........+..+..... .....+.++... ..+.+...+..+.+++.+||+.+|++|||+++|++.|+
T Consensus 205 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~ 279 (283)
T cd05080 205 THCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGM-----RLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILK 279 (283)
T ss_pred hCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCC-----CCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHH
Confidence 999998653221111111000000 000001111110 01112234567899999999999999999999999999
Q ss_pred HhH
Q 040540 656 KIK 658 (669)
Q Consensus 656 ~~~ 658 (669)
+++
T Consensus 280 ~~~ 282 (283)
T cd05080 280 EMH 282 (283)
T ss_pred Hhh
Confidence 875
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-24 Score=215.50 Aligned_cols=185 Identities=19% Similarity=0.202 Sum_probs=141.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.++..++|++++++++.+...+..++||||+++|+|.+++... ...+++.....++.|++.|++|||. .
T Consensus 46 ~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~----~ 121 (285)
T cd05631 46 MALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQR----E 121 (285)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 3557899999999999999999998888999999999999999888643 3358899999999999999999994 4
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+++|||+|+.. ......||..|||||++.+..++.++|||||||++|||++|+.||
T Consensus 122 ~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf 201 (285)
T cd05631 122 RIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPF 201 (285)
T ss_pred CEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCC
Confidence 89999998430 012235899999999999888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
....... ...-+......... ..+......+.+++.+||+.||.+||+ ++++++
T Consensus 202 ~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~ 260 (285)
T cd05631 202 RKRKERV--KREEVDRRVKEDQE--------------EYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ 260 (285)
T ss_pred CCCCcch--hHHHHHHHhhcccc--------------cCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence 7632211 11111111111000 011223456789999999999999997 677765
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-24 Score=220.11 Aligned_cols=193 Identities=25% Similarity=0.407 Sum_probs=147.1
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+..+.++ +|+|++++++++...+..++||||+++|+|.++++..+ ..+++.+...++.
T Consensus 52 ~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (303)
T cd05088 52 RDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 131 (303)
T ss_pred HHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHH
Confidence 3566788889898 89999999999999899999999999999999997432 2478889999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcccc------------------------cccccccccCccccccCCCcCccccch
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSVTQ------------------------TTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~~~------------------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
++++|++|||+ .+++|+|+++.... ....++..|+|||+..+..++.++|||
T Consensus 132 qi~~al~~LH~----~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~ 207 (303)
T cd05088 132 DVARGMDYLSQ----KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVW 207 (303)
T ss_pred HHHHHHHHHHh----CCccccccchheEEecCCCcEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccch
Confidence 99999999994 48999999954100 001134579999998888889999999
Q ss_pred hhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
||||++|||+| |..||...... .....+ +.... . ..+...+..+.+++.+||+.+|++||
T Consensus 208 slG~il~ellt~g~~p~~~~~~~--~~~~~~----~~~~~----~---------~~~~~~~~~~~~li~~~l~~~p~~Rp 268 (303)
T cd05088 208 SYGVLLWEIVSLGGTPYCGMTCA--ELYEKL----PQGYR----L---------EKPLNCDDEVYDLMRQCWREKPYERP 268 (303)
T ss_pred hhhhHHHHHHhcCCCCcccCChH--HHHHHH----hcCCc----C---------CCCCCCCHHHHHHHHHHcCCChhhCc
Confidence 99999999998 99998653211 111111 11000 0 00112234578999999999999999
Q ss_pred CHHHHHHHHHHhHHHhh
Q 040540 646 HMTDAAAKLKKIKVKFL 662 (669)
Q Consensus 646 s~~~v~~~l~~~~~~~~ 662 (669)
++.+++++++++.....
T Consensus 269 ~~~~il~~l~~~~~~~~ 285 (303)
T cd05088 269 SFAQILVSLNRMLEERK 285 (303)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999998765543
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-24 Score=212.20 Aligned_cols=191 Identities=21% Similarity=0.243 Sum_probs=147.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
..+..|+..+..++|+|++++++++..++..+++|||+++++|.+++.. ....+++.....++.++++|+.|||.
T Consensus 47 ~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~-- 124 (267)
T cd08229 47 ADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHS-- 124 (267)
T ss_pred HHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 3566789999999999999999999888889999999999999999863 23468899999999999999999994
Q ss_pred CCCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 524 SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......|+..|+|||+..+..++.++||||||+++|||++|
T Consensus 125 --~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g 202 (267)
T cd08229 125 --RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 202 (267)
T ss_pred --CCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhC
Confidence 479999998431 00122578899999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
..||.....+...+...+.. ...+... +......+.+++.+||..+|++||||.+|.++++++
T Consensus 203 ~~p~~~~~~~~~~~~~~~~~--------~~~~~~~--------~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 203 QSPFYGDKMNLYSLCKKIEQ--------CDYPPLP--------SDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred CCCcccccchHHHHhhhhhc--------CCCCCCC--------cccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 99986432211111111110 0011110 123445688999999999999999999999998875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-24 Score=219.56 Aligned_cols=193 Identities=22% Similarity=0.377 Sum_probs=147.9
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+..+..+ +|+|++++++.+......+++|||+++|+|.+++.... ..+++.++..++.
T Consensus 65 ~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (304)
T cd05101 65 SDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTY 144 (304)
T ss_pred HHHHHHHHHHHhhccCCCchheeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHH
Confidence 3566788889888 89999999999998889999999999999999997521 2477888999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
|+++|++|||. .+++|+|+|+... .....++..|+|||+..+..++.++
T Consensus 145 qi~~al~~LH~----~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 220 (304)
T cd05101 145 QVARGMEYLAS----QKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQS 220 (304)
T ss_pred HHHHHHHHHHH----CCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchh
Confidence 99999999994 4799999985410 0011245679999999888899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++||++| |..|+.... ...+...+...... ..+..++..+.+++.+||..+|+
T Consensus 221 Di~slG~~l~el~~~g~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~cl~~~p~ 281 (304)
T cd05101 221 DVWSFGVLMWEIFTLGGSPYPGIP--VEELFKLLKEGHRM-----------------DKPANCTNELYMMMRDCWHAIPS 281 (304)
T ss_pred hHHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHHcCCcC-----------------CCCCCCCHHHHHHHHHHcccChh
Confidence 99999999999998 788875421 11111111111000 00123345678999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHhh
Q 040540 643 KRMHMTDAAAKLKKIKVKFL 662 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~~~ 662 (669)
+||+|.||++.|+++.....
T Consensus 282 ~Rps~~e~l~~l~~~~~~~~ 301 (304)
T cd05101 282 HRPTFKQLVEDLDRILTLTT 301 (304)
T ss_pred hCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999876543
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-24 Score=217.34 Aligned_cols=191 Identities=22% Similarity=0.366 Sum_probs=157.3
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.|..|..+|++.+||||++++|.|.. ...|||||.++-|.|..+|..++..++......++.|+..|++||| +
T Consensus 435 tekflqEa~iMrnfdHphIikLIGv~~e-~P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLe----S 509 (974)
T KOG4257|consen 435 TEKFLQEASIMRNFDHPHIIKLIGVCVE-QPMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLE----S 509 (974)
T ss_pred HHHHHHHHHHHHhCCCcchhheeeeeec-cceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----h
Confidence 3567889999999999999999999974 5668999999999999999988888998999999999999999998 4
Q ss_pred CCeeecCCCCc------------------------ccccccc--cccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDS------------------------VTQTTTM--ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~------------------------~~~~~~~--gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+.+|||+..- ...+... --..|||||-+.-++++.++|||-|||.+||++. |
T Consensus 510 krfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lG 589 (974)
T KOG4257|consen 510 KRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLG 589 (974)
T ss_pred hchhhhhhhhhheeecCcceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhc
Confidence 58999998721 0011111 2457999999999999999999999999999977 8
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
..||......+. + .....+.|.|.++.|++.+.-++.+||+.+|.+||.+.++...|.++.
T Consensus 590 vkPfqgvkNsDV-----------------I--~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~ 650 (974)
T KOG4257|consen 590 VKPFQGVKNSDV-----------------I--GHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVL 650 (974)
T ss_pred CCccccccccce-----------------E--EEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHH
Confidence 999976432221 1 112234566778899999999999999999999999999999999987
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
+.
T Consensus 651 qe 652 (974)
T KOG4257|consen 651 QE 652 (974)
T ss_pred HH
Confidence 63
|
|
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-24 Score=211.33 Aligned_cols=184 Identities=25% Similarity=0.355 Sum_probs=143.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++......++||||+++++|.++++.....+++.....++.++++|++|||. .+
T Consensus 45 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~----~~ 120 (256)
T cd05059 45 DFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLES----NG 120 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 46678999999999999999999988888999999999999999998655578999999999999999999995 47
Q ss_pred eeecCCCCccc---------------c--------cc---cccccccCccccccCCCcCccccchhhHHHHHHHHh-CCC
Q 040540 528 IIHCEGEDSVT---------------Q--------TT---TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKR 580 (669)
Q Consensus 528 i~h~d~~~~~~---------------~--------~~---~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~ 580 (669)
++|+|+++... . .. ..++..|+|||...+..++.++|||||||++|||+| |+.
T Consensus 121 i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~ 200 (256)
T cd05059 121 FIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKM 200 (256)
T ss_pred cccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCC
Confidence 99999885410 0 00 112346999999988889999999999999999999 788
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
||..... ......+....+. +.+...+..+.+++.+||+.+|++||||.|+++.|
T Consensus 201 p~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l 255 (256)
T cd05059 201 PYERFSN--SEVVESVSAGYRL-----------------YRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL 255 (256)
T ss_pred CCCCCCH--HHHHHHHHcCCcC-----------------CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence 9865321 1122212111110 01122345688999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-24 Score=193.55 Aligned_cols=182 Identities=21% Similarity=0.258 Sum_probs=147.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+++.+|+++-+.++||||.++++++.+....|+++||.++|+++..|.+.. ..+++.....++.|+|.|+.|+| .
T Consensus 67 ~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h----~ 142 (281)
T KOG0580|consen 67 HQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCH----L 142 (281)
T ss_pred hhhhheeEeecccCCccHHhhhhheeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhc----c
Confidence 467789999999999999999999999999999999999999999998532 34777788889999999999999 4
Q ss_pred CCeeecCCCCc-----------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 526 APIIHCEGEDS-----------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 526 ~~i~h~d~~~~-----------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+.|||||+|+. ....+.+||.-|.+||+..+..++.++|+|++||+.||++.|.+||
T Consensus 143 k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppF 222 (281)
T KOG0580|consen 143 KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPF 222 (281)
T ss_pred CCcccCCCCHHHhccCCCCCeeccCCCceeecCCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCch
Confidence 68999999943 2234557999999999999999999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
..... .....+-.+. ++.+ +......+.+++.+|+..+|.+|.+..||+.
T Consensus 223 es~~~-~etYkrI~k~-------~~~~------------p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~ 272 (281)
T KOG0580|consen 223 ESQSH-SETYKRIRKV-------DLKF------------PSTISGGAADLISRLLVKNPIERLALTEVMD 272 (281)
T ss_pred hhhhh-HHHHHHHHHc-------cccC------------CcccChhHHHHHHHHhccCccccccHHHHhh
Confidence 76431 1112211111 1111 2334456789999999999999999999864
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-24 Score=207.67 Aligned_cols=182 Identities=21% Similarity=0.270 Sum_probs=144.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
....|-+++..+.||.+..++..+..+.+.+++||||+||+|+.+.++ .+..+++....-++.+|.-||+|||- .
T Consensus 123 Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHm----l 198 (459)
T KOG0610|consen 123 RAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHM----L 198 (459)
T ss_pred HHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHh----h
Confidence 344678899999999999999999999999999999999999999876 34467888888899999999999994 4
Q ss_pred CeeecCCCCc----------------------------------------------------------------------
Q 040540 527 PIIHCEGEDS---------------------------------------------------------------------- 536 (669)
Q Consensus 527 ~i~h~d~~~~---------------------------------------------------------------------- 536 (669)
+||-||+|+.
T Consensus 199 GivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~ 278 (459)
T KOG0610|consen 199 GIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASR 278 (459)
T ss_pred ceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccc
Confidence 7888888721
Q ss_pred -----------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCcc
Q 040540 537 -----------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLS 605 (669)
Q Consensus 537 -----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~ 605 (669)
....+++||..|.|||++.+..++.++|+|+|||.+|||+.|+.||.+....+ .+ .
T Consensus 279 ~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~-Tl------------~ 345 (459)
T KOG0610|consen 279 SLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKE-TL------------R 345 (459)
T ss_pred cchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchh-hH------------H
Confidence 00113469999999999999999999999999999999999999997643322 12 2
Q ss_pred ccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC----HHHHH
Q 040540 606 EVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH----MTDAA 651 (669)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps----~~~v~ 651 (669)
.++... ..++.....+..+.|+|.+.+.+||.+|-. +.||.
T Consensus 346 NIv~~~-----l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK 390 (459)
T KOG0610|consen 346 NIVGQP-----LKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIK 390 (459)
T ss_pred HHhcCC-----CcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhh
Confidence 222221 223333456678899999999999999987 55553
|
|
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-24 Score=211.27 Aligned_cols=183 Identities=21% Similarity=0.207 Sum_probs=143.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+..++.++|+|++++++++......++||||+++++|.++++.. ...+++....+++.++++|+.|||.
T Consensus 44 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~---- 119 (256)
T cd08529 44 EEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHS---- 119 (256)
T ss_pred HHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 45667888999999999999999999888899999999999999999864 4568899999999999999999994
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
.+++|+|+++.. ......|++.|+|||+..+..++.++|||||||++|||+||+.
T Consensus 120 ~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~ 199 (256)
T cd08529 120 KKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKH 199 (256)
T ss_pred CCcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCC
Confidence 489999998531 0011247788999999988889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... .......+...... .+ +......+.+++.+||+.+|++||+|.++++
T Consensus 200 p~~~~~--~~~~~~~~~~~~~~--------~~---------~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~ 252 (256)
T cd08529 200 PFDANN--QGALILKIIRGVFP--------PV---------SQMYSQQLAQLIDQCLTKDYRQRPDTFQLLR 252 (256)
T ss_pred CCCCCC--HHHHHHHHHcCCCC--------CC---------ccccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence 986532 11112211111100 00 1123456789999999999999999999976
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-24 Score=216.08 Aligned_cols=186 Identities=19% Similarity=0.285 Sum_probs=141.7
Q ss_pred cccCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
...|..|+..+.+++ |.+||.+++|...+++.|+||||-+ -+|..+|+......+.-.+..|..++..++.++|+.
T Consensus 403 l~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~Gd-~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~-- 479 (677)
T KOG0596|consen 403 LDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECGD-IDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQH-- 479 (677)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeeccc-ccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHh--
Confidence 346788999999995 8999999999999999999999775 699999987655555236778999999999999965
Q ss_pred CCCeeecCCCCc--------------------------ccccccccccccCccccccCC-----------CcCccccchh
Q 040540 525 SAPIIHCEGEDS--------------------------VTQTTTMATIGYMAPEYGSEG-----------IVSAKCDVYS 567 (669)
Q Consensus 525 ~~~i~h~d~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~s 567 (669)
+|||.|+|+. ....+.+||+.||+||.+... +.+.++||||
T Consensus 480 --gIVHSDLKPANFLlVkG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWS 557 (677)
T KOG0596|consen 480 --GIVHSDLKPANFLLVKGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWS 557 (677)
T ss_pred --ceeecCCCcccEEEEeeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhh
Confidence 8999999954 112345799999999976432 2568999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
+|||||+|+.|++||.... ..|.+ +..+++|...=+.+..+.. ..+++++..|+++||.+||+.
T Consensus 558 LGCILYqMvYgktPf~~~~------n~~aK------l~aI~~P~~~Iefp~~~~~----~~li~~mK~CL~rdPkkR~si 621 (677)
T KOG0596|consen 558 LGCILYQMVYGKTPFGQII------NQIAK------LHAITDPNHEIEFPDIPEN----DELIDVMKCCLARDPKKRWSI 621 (677)
T ss_pred hhhHHHHHHhcCCchHHHH------HHHHH------HHhhcCCCccccccCCCCc----hHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999986521 12222 2334444321111111111 227899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.++++
T Consensus 622 ~eLLq 626 (677)
T KOG0596|consen 622 PELLQ 626 (677)
T ss_pred HHHhc
Confidence 99987
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-24 Score=198.45 Aligned_cols=196 Identities=18% Similarity=0.169 Sum_probs=142.7
Q ss_pred chhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
.+|+.++++++|+|+|.++..|......++|+|||+..-|.+ |.+....++.....+|..|+++|+.|+| +..+|
T Consensus 49 lREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dhTvL~e-Le~~p~G~~~~~vk~~l~Q~l~ai~~cH----k~n~I 123 (396)
T KOG0593|consen 49 LREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDHTVLHE-LERYPNGVPSELVKKYLYQLLKAIHFCH----KNNCI 123 (396)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecchHHHHH-HHhccCCCCHHHHHHHHHHHHHHhhhhh----hcCee
Confidence 468999999999999999999999999999999999754444 4444556888888899999999999999 45799
Q ss_pred ecCCCCc-------------------------ccccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 530 HCEGEDS-------------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 530 h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
|||+|+. ...+..+.|.+|.|||.+.+ .+|+.++||||.||++.||+||.+-|.
T Consensus 124 HRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~P 203 (396)
T KOG0593|consen 124 HRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWP 203 (396)
T ss_pred cccCChhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCC
Confidence 9999964 12344578999999999877 779999999999999999999998775
Q ss_pred cCCCCCccHHHHHHHhC---CCCccc----------cccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 584 EMFTGEMSLRRWVKESL---PHRLSE----------VVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+. .+.+..-.++..+ .++... +.-|......+....-......+.+++.+|+..||++|++.+++
T Consensus 204 G~--SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~ql 281 (396)
T KOG0593|consen 204 GR--SDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQL 281 (396)
T ss_pred Cc--chHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHH
Confidence 52 2222222222211 111111 11122211111111112344467899999999999999999998
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
+.
T Consensus 282 l~ 283 (396)
T KOG0593|consen 282 LH 283 (396)
T ss_pred hc
Confidence 64
|
|
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-24 Score=212.05 Aligned_cols=189 Identities=25% Similarity=0.412 Sum_probs=144.1
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+..+.++ +|||++++++.|...+..+++|||+++|+|.++++... ..+++.+...++.
T Consensus 40 ~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 119 (270)
T cd05047 40 RDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 119 (270)
T ss_pred HHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHH
Confidence 3566788889888 79999999999998888999999999999999997532 2478889999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCccc------------------------ccccccccccCccccccCCCcCccccch
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSVT------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~~------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
+++.|++|||. .+++|+|+++... ......+..|+|||+.....++.++|||
T Consensus 120 ~i~~al~~lH~----~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~ 195 (270)
T cd05047 120 DVARGMDYLSQ----KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVW 195 (270)
T ss_pred HHHHHHHHHHH----CCEeecccccceEEEcCCCeEEECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHH
Confidence 99999999994 5899999995410 0001124569999999888899999999
Q ss_pred hhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
||||++|||+| |+.||..... .......... .. . . .+......+.+++.+||..+|.+||
T Consensus 196 slG~il~el~~~g~~pf~~~~~-----~~~~~~~~~~-~~--~--~---------~~~~~~~~~~~li~~~l~~~p~~Rp 256 (270)
T cd05047 196 SYGVLLWEIVSLGGTPYCGMTC-----AELYEKLPQG-YR--L--E---------KPLNCDDEVYDLMRQCWREKPYERP 256 (270)
T ss_pred HHHHHHHHHHcCCCCCccccCH-----HHHHHHHhCC-CC--C--C---------CCCcCCHHHHHHHHHHcccChhhCC
Confidence 99999999997 9999865321 1111111110 00 0 0 0112234578999999999999999
Q ss_pred CHHHHHHHHHHhH
Q 040540 646 HMTDAAAKLKKIK 658 (669)
Q Consensus 646 s~~~v~~~l~~~~ 658 (669)
++.|+++.|+++.
T Consensus 257 s~~~il~~l~~~~ 269 (270)
T cd05047 257 SFAQILVSLNRML 269 (270)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998763
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-24 Score=212.46 Aligned_cols=188 Identities=26% Similarity=0.440 Sum_probs=147.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++...+..++||||+++++|.+++......+++.+...|+.+++.|+.|||. .
T Consensus 50 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~----~ 125 (267)
T cd05066 50 RDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSD----M 125 (267)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 356778889999999999999999988889999999999999999998765668999999999999999999994 4
Q ss_pred CeeecCCCCccc---------------------c-----cc--cccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT---------------------Q-----TT--TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------~-----~~--~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++... . .. ..++..|+|||+..+..++.++|||||||++||+++
T Consensus 126 ~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~ 205 (267)
T cd05066 126 GYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSY 205 (267)
T ss_pred CEeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcC
Confidence 799999985310 0 00 012457999999988889999999999999999887
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ......+....+ .+.+...+..+.+++.+|++.+|.+||+|.++++.|+++
T Consensus 206 g~~p~~~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 266 (267)
T cd05066 206 GERPYWEMSN--QDVIKAIEEGYR-----------------LPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL 266 (267)
T ss_pred CCCCcccCCH--HHHHHHHhCCCc-----------------CCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence 9999865321 122222221110 001122345678999999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-24 Score=219.15 Aligned_cols=177 Identities=22% Similarity=0.192 Sum_probs=138.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++.+......++||||+++|+|.+++... ..+++.....++.++++|+.|||. .+
T Consensus 39 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~~ 113 (312)
T cd05585 39 HTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQRE-GRFDLSRARFYTAELLCALENLHK----FN 113 (312)
T ss_pred HHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4556888999999999999999999888999999999999999999753 458889999999999999999994 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 114 i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf 193 (312)
T cd05585 114 VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPF 193 (312)
T ss_pred eEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCc
Confidence 9999998430 011235899999999999888999999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
.... ..+.......... ..+......+.+++.+||+.||++||++.+
T Consensus 194 ~~~~-----~~~~~~~~~~~~~---------------~~~~~~~~~~~~li~~~L~~dp~~R~~~~~ 240 (312)
T cd05585 194 YDEN-----VNEMYRKILQEPL---------------RFPDGFDRDAKDLLIGLLSRDPTRRLGYNG 240 (312)
T ss_pred CCCC-----HHHHHHHHHcCCC---------------CCCCcCCHHHHHHHHHHcCCCHHHcCCCCC
Confidence 6521 1111111111100 001223356789999999999999986433
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=210.86 Aligned_cols=188 Identities=26% Similarity=0.412 Sum_probs=145.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+++++|+|++++++++...+..+++|||+++++|.+++.... ..+++.....++.+++.|+.|||.
T Consensus 46 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---- 121 (261)
T cd05068 46 KDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEA---- 121 (261)
T ss_pred HHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 356678999999999999999999988888999999999999999997543 468999999999999999999995
Q ss_pred CCeeecCCCCccc-----------------------cccccc---ccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSVT-----------------------QTTTMA---TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~~-----------------------~~~~~g---t~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|+|+++... .....| +..|+|||+.....++.++|||||||++|||+| |
T Consensus 122 ~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g 201 (261)
T cd05068 122 QNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYG 201 (261)
T ss_pred CCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcC
Confidence 4799999985410 000112 246999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
+.||..... ..+...+....+. +.+...+..+.+++.+|++.+|++||+|.++++.|+++
T Consensus 202 ~~p~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~ 261 (261)
T cd05068 202 RMPYPGMTN--AEVLQQVDQGYRM-----------------PCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLEDF 261 (261)
T ss_pred CCCCCCCCH--HHHHHHHHcCCCC-----------------CCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence 999865321 1111111111000 01122345678999999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-25 Score=240.66 Aligned_cols=184 Identities=22% Similarity=0.272 Sum_probs=144.0
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.....|+.++..+.|||+|+++|...+++..+|.||||.+|+|.+.+. ++...++.-...+..|++.|+.|||..
T Consensus 1278 ~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~-~gri~dE~vt~vyt~qll~gla~LH~~--- 1353 (1509)
T KOG4645|consen 1278 FKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLE-HGRIEDEMVTRVYTKQLLEGLAYLHEH--- 1353 (1509)
T ss_pred CcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccCcHHHHHH-hcchhhhhHHHHHHHHHHHHHHHHHhc---
Confidence 4456779999999999999999999999999999999999999999997 455566666667889999999999954
Q ss_pred CCeeecCCCCcc-----------------------------cccccccccccCccccccCC---CcCccccchhhHHHHH
Q 040540 526 APIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG---IVSAKCDVYSYGVLLM 573 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~s~Gvil~ 573 (669)
+|+|||+|+.. ......||+.|||||++.+. ....++||||+|||+.
T Consensus 1354 -gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVl 1432 (1509)
T KOG4645|consen 1354 -GIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVL 1432 (1509)
T ss_pred -CceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEE
Confidence 79999999530 01123599999999999764 3667999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||+||+.||..... ...+.-.|..+.-+.+ |........+++.+|+..||..|.++.|+++
T Consensus 1433 EM~tGkrPW~~~dn-e~aIMy~V~~gh~Pq~-----------------P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1433 EMATGKRPWAELDN-EWAIMYHVAAGHKPQI-----------------PERLSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred EeecCCCchhhccc-hhHHHhHHhccCCCCC-----------------chhhhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence 99999999987532 3333333433332111 2234556789999999999999988776543
|
|
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-24 Score=212.19 Aligned_cols=188 Identities=22% Similarity=0.423 Sum_probs=147.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.|..|+..++.++|||++++.+.+......++||||+++|+|.++++.....+++.++..++.+++.|+.|||. .
T Consensus 50 ~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~----~ 125 (269)
T cd05065 50 RDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSE----M 125 (269)
T ss_pred HHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 456778999999999999999999988888999999999999999998655668999999999999999999994 4
Q ss_pred CeeecCCCCccc---------------------------ccccc---cccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTM---ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~---gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++... ..... ++..|+|||++....++.++|||||||++||++
T Consensus 126 g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l 205 (269)
T cd05065 126 NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 205 (269)
T ss_pred CEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHh
Confidence 899999985310 00001 134699999998888999999999999999988
Q ss_pred h-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 T-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+ |+.||.... ......++....+ .+.+.+++..+.+++.+||+.+|++||+|.+|+..|+
T Consensus 206 ~~g~~p~~~~~--~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 266 (269)
T cd05065 206 SYGERPYWDMS--NQDVINAIEQDYR-----------------LPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLD 266 (269)
T ss_pred cCCCCCCCCCC--HHHHHHHHHcCCc-----------------CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 7 999986532 1223333321110 0112233456789999999999999999999999988
Q ss_pred Hh
Q 040540 656 KI 657 (669)
Q Consensus 656 ~~ 657 (669)
++
T Consensus 267 ~~ 268 (269)
T cd05065 267 KM 268 (269)
T ss_pred hh
Confidence 75
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-24 Score=215.23 Aligned_cols=190 Identities=25% Similarity=0.410 Sum_probs=147.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-----------------------CCccCHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-----------------------NYFLDIL 503 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-----------------------~~~l~~~ 503 (669)
+.+..|+..+..++|||++++++.|......++++||+++|+|.+++... ...+++.
T Consensus 48 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (290)
T cd05045 48 RDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMG 127 (290)
T ss_pred HHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHH
Confidence 45667899999999999999999999888999999999999999998642 1247788
Q ss_pred HHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccC
Q 040540 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 504 ~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~ 556 (669)
....++.+++.|++|||+ .+++|+|+++... .....++..|+|||+..+
T Consensus 128 ~~~~i~~~i~~~l~~LH~----~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~ 203 (290)
T cd05045 128 DLISFAWQISRGMQYLAE----MKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFD 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHH----CCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHcc
Confidence 899999999999999994 4799999985310 001124568999999888
Q ss_pred CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..++.++||||||+++|||+| |+.||.... ...+..++...... +.+......+.+++.+
T Consensus 204 ~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~ 264 (290)
T cd05045 204 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA--PERLFNLLKTGYRM-----------------ERPENCSEEMYNLMLT 264 (290)
T ss_pred CCcchHhHHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHhCCCCC-----------------CCCCCCCHHHHHHHHH
Confidence 889999999999999999999 999986532 11222222211110 0012233467899999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHH
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
||+.+|++||++.|+++.|+++..
T Consensus 265 cl~~~P~~Rp~~~~i~~~l~~~~~ 288 (290)
T cd05045 265 CWKQEPDKRPTFADISKELEKMMV 288 (290)
T ss_pred HccCCcccCCCHHHHHHHHHHHHh
Confidence 999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=217.64 Aligned_cols=190 Identities=23% Similarity=0.389 Sum_probs=143.8
Q ss_pred cCchhhhhhccc-cccccceeccccccc-cccceeeccCCCCChHHhhhcCC----------------------------
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNP-DFKALVLEFMPNGSLEKWLYSHN---------------------------- 497 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~~---------------------------- 497 (669)
.+..|+..+..+ +|+|+++++++|... ...+++|||+++|+|.+++....
T Consensus 56 ~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (337)
T cd05054 56 ALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDS 135 (337)
T ss_pred HHHHHHHHHHhhccCcchhheeeeEecCCCCEEEEEecCCCCCHHHHHHhcccccccccccccccccccccccccccccc
Confidence 455688888888 799999999988654 55789999999999999986321
Q ss_pred --------------------------------CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCccc-------
Q 040540 498 --------------------------------YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVT------- 538 (669)
Q Consensus 498 --------------------------------~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~~------- 538 (669)
..++|..+..++.++++|++|||. .+|+|||+|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~----~~ivHrDikp~Nill~~~~~ 211 (337)
T cd05054 136 VSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLAS----RKCIHRDLAARNILLSENNV 211 (337)
T ss_pred CCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHh----CCeecCCCCcceEEEeCCCc
Confidence 257888999999999999999994 4899999995410
Q ss_pred --------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHH
Q 040540 539 --------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVK 597 (669)
Q Consensus 539 --------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~ 597 (669)
.....++..|+|||++.+..++.++|||||||++|||++ |+.||......+ .+.....
T Consensus 212 vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~-~~~~~~~ 290 (337)
T cd05054 212 VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDE-EFCRRLK 290 (337)
T ss_pred EEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccH-HHHHHHh
Confidence 001124568999999999899999999999999999998 999986532211 1222111
Q ss_pred HhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 598 ESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
..... . .+......+.+++.+||+.+|++||++.|+++.|+++.+
T Consensus 291 ~~~~~----~-------------~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~ 335 (337)
T cd05054 291 EGTRM----R-------------APEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ 335 (337)
T ss_pred ccCCC----C-------------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 11100 0 011234567899999999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-24 Score=220.36 Aligned_cols=180 Identities=19% Similarity=0.169 Sum_probs=141.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++.+...+..++||||+++|+|.+++... ..+++.....++.|+++||+|||. .+
T Consensus 41 ~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~lH~----~~ 115 (323)
T cd05571 41 HTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALGYLHS----CD 115 (323)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 3456888999999999999999999889999999999999999999753 468899999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||+||+.||
T Consensus 116 ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf 195 (323)
T cd05571 116 VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPF 195 (323)
T ss_pred eEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCC
Confidence 9999998430 011235899999999999888999999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
.... ...+...+.. ... . .+......+.+++.+|++.||++|| ++.++++
T Consensus 196 ~~~~--~~~~~~~~~~---~~~------~---------~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~ 250 (323)
T cd05571 196 YNQD--HEKLFELILM---EEI------R---------FPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME 250 (323)
T ss_pred CCCC--HHHHHHHHHc---CCC------C---------CCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence 6521 1111111111 000 0 0112344578999999999999999 7888764
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-24 Score=219.40 Aligned_cols=206 Identities=20% Similarity=0.248 Sum_probs=144.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.+++.++|||++++++++..++..++||||+++|+|.+++..+ ...+++.....++.|+++||+|||. .
T Consensus 45 ~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~----~ 120 (327)
T cd08227 45 FLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHH----M 120 (327)
T ss_pred HHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 4556888899999999999999999999999999999999999999653 3458899999999999999999994 4
Q ss_pred CeeecCCCCccc--------------------------------ccccccccccCccccccC--CCcCccccchhhHHHH
Q 040540 527 PIIHCEGEDSVT--------------------------------QTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLL 572 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------------------~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil 572 (669)
+++|+|+|+... .....++..|+|||++.+ ..++.++|||||||++
T Consensus 121 ~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il 200 (327)
T cd08227 121 GYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITA 200 (327)
T ss_pred CEecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHH
Confidence 799999985410 001135667999999876 4588999999999999
Q ss_pred HHHHhCCCCCCcCCCCCccHHHHHHHhCCCCcc---------------ccccccc------------cchhhhhhhhHHH
Q 040540 573 METFTRKRPTDEMFTGEMSLRRWVKESLPHRLS---------------EVVDTNL------------VREEQAFSAKMDC 625 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~---------------~~~~~~~------------~~~~~~~~~~~~~ 625 (669)
|||++|+.||....... ..........+.... ...+... .......+.....
T Consensus 201 ~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (327)
T cd08227 201 CELANGHVPFKDMPATQ-MLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTF 279 (327)
T ss_pred HHHHHCCCCCCCcchhH-HHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCccccccccc
Confidence 99999999997532211 111111111110000 0000000 0000001112234
Q ss_pred HHHHHHHHhhcccCCCCCCCCHHHHHH--HHHHhH
Q 040540 626 LLSIMDLALDCCMESPDKRMHMTDAAA--KLKKIK 658 (669)
Q Consensus 626 ~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~~~ 658 (669)
...+.+++.+||+.||++|||++|+++ .+++++
T Consensus 280 ~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~~~ 314 (327)
T cd08227 280 SPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIK 314 (327)
T ss_pred CHHHHHHHHHHHhhCchhcCCHHHHhcChhhhhcc
Confidence 567889999999999999999999986 344443
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=214.97 Aligned_cols=189 Identities=21% Similarity=0.347 Sum_probs=146.1
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.+++++ +|+|++++++++......+++|||+++|+|.++++... ..+++.+...++.++++|++|+|.
T Consensus 83 ~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--- 159 (302)
T cd05055 83 EALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLAS--- 159 (302)
T ss_pred HHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 3566789999999 79999999999998888999999999999999997533 348999999999999999999994
Q ss_pred CCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 525 SAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+++... .....++..|+|||.+....++.++|||||||++|||+|
T Consensus 160 -~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t 238 (302)
T cd05055 160 -KNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFS 238 (302)
T ss_pred -CCeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHh
Confidence 4799999985410 001124567999999988889999999999999999998
Q ss_pred -CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 578 -RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 578 -g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
|+.||....... .+........+.. .+......+.+++.+|+..+|++||++.|+++.|++
T Consensus 239 ~g~~p~~~~~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~ 300 (302)
T cd05055 239 LGSNPYPGMPVDS-KFYKLIKEGYRMA-----------------QPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGK 300 (302)
T ss_pred CCCCCcCCCCchH-HHHHHHHcCCcCC-----------------CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHh
Confidence 999986532211 1222221111000 011223467899999999999999999999999987
Q ss_pred h
Q 040540 657 I 657 (669)
Q Consensus 657 ~ 657 (669)
.
T Consensus 301 ~ 301 (302)
T cd05055 301 Q 301 (302)
T ss_pred h
Confidence 4
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-24 Score=215.71 Aligned_cols=183 Identities=18% Similarity=0.207 Sum_probs=149.3
Q ss_pred cCchhhhhhccccccccceeccccccccc-cceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDF-KALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~-~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.-..|+..+++++|||+|.+.+.+..++. .+|||+||+||++.+.+.+.+ ..+++....+++.|+..|+.|||.
T Consensus 49 ~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~---- 124 (426)
T KOG0589|consen 49 SAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHE---- 124 (426)
T ss_pred HHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh----
Confidence 34568999999999999999999988777 899999999999999998644 567888889999999999999993
Q ss_pred CCeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
..|+|||+|.. ....+.+||+.||.||++.+..|+.|+||||+||++|||++-+.
T Consensus 125 ~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~ 204 (426)
T KOG0589|consen 125 NRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKP 204 (426)
T ss_pred hhhhcccchhhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhccc
Confidence 57999999832 12344579999999999999999999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
+|.+... ...+.+-.+. .+ .+.+...+.++..++..|+..+|..||++.+++.+
T Consensus 205 aF~a~~m-----~~Li~ki~~~----~~----------~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~ 258 (426)
T KOG0589|consen 205 AFKASNM-----SELILKINRG----LY----------SPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR 258 (426)
T ss_pred ccCccch-----HHHHHHHhhc----cC----------CCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence 9976332 2222211111 11 12244566778899999999999999999999987
|
|
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=210.54 Aligned_cols=187 Identities=26% Similarity=0.445 Sum_probs=146.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..++.++|+|++++++++......++||||+++|+|.+++++ .+..+++.....++.++++|+.|||. .
T Consensus 48 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~----~ 123 (261)
T cd05148 48 DFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEE----Q 123 (261)
T ss_pred HHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 466788899999999999999999988899999999999999999986 33468999999999999999999994 4
Q ss_pred CeeecCCCCccc-------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCC
Q 040540 527 PIIHCEGEDSVT-------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~~-------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~ 580 (669)
+++|+|+++... .....++..|+|||......++.++||||||+++|||++ |+.
T Consensus 124 ~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~ 203 (261)
T cd05148 124 NSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQV 203 (261)
T ss_pred CeeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCC
Confidence 799999985410 001124567999999988889999999999999999998 899
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
||.... .......+...... +.+..++..+.+++.+||+.||++|||++++++.|+.+
T Consensus 204 p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~ 261 (261)
T cd05148 204 PYPGMN--NHEVYDQITAGYRM-----------------PCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI 261 (261)
T ss_pred CCCcCC--HHHHHHHHHhCCcC-----------------CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence 986532 11122222211110 01123345678999999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-24 Score=216.43 Aligned_cols=202 Identities=24% Similarity=0.394 Sum_probs=143.7
Q ss_pred ccCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|+|++++++++.. ....++|+||+++|+|.+++.+....+++..+..++.++++|++|||.
T Consensus 50 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~--- 126 (284)
T cd05081 50 RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGS--- 126 (284)
T ss_pred HHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 356778999999999999999987654 345789999999999999997655668999999999999999999994
Q ss_pred CCCeeecCCCCccc--------------c--------------cccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSVT--------------Q--------------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~~--------------~--------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+... . ....++..|+|||+..+..++.++|||||||++|||+
T Consensus 127 -~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~ 205 (284)
T cd05081 127 -KRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 205 (284)
T ss_pred -CCceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHh
Confidence 4799999985310 0 0001234599999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcccccccc---ccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTN---LVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
+|..|+...... +................ ......+.+.+...+..+.+++.+||..+|++||||.||++.
T Consensus 206 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~ 279 (284)
T cd05081 206 TYSDKSCSPPAE------FMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQ 279 (284)
T ss_pred hcCCcCCCcchh------hhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHH
Confidence 998775432110 00000000000000000 000001111123345678999999999999999999999999
Q ss_pred HHHhH
Q 040540 654 LKKIK 658 (669)
Q Consensus 654 l~~~~ 658 (669)
|++++
T Consensus 280 l~~~~ 284 (284)
T cd05081 280 VEAIR 284 (284)
T ss_pred HHhcC
Confidence 98763
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-24 Score=216.71 Aligned_cols=180 Identities=19% Similarity=0.213 Sum_probs=140.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++.+......++||||+++|+|.++++.. ..+++.....++.++++|++|||. .+
T Consensus 47 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~~ 121 (291)
T cd05612 47 HVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNS-GRFSNSTGLFYASEIVCALEYLHS----KE 121 (291)
T ss_pred HHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4667899999999999999999998888999999999999999999754 457888889999999999999994 48
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
++|+|+++.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus 122 i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~ 201 (291)
T cd05612 122 IVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD 201 (291)
T ss_pred eeecCCCHHHeEECCCCCEEEEecCcchhccCCcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999998531 011235899999999998888999999999999999999999998653
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
.. ....+.+..... . .+......+.+++.+|++.||.+||+ +.|+++
T Consensus 202 ~~--~~~~~~i~~~~~---------~---------~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~ 253 (291)
T cd05612 202 NP--FGIYEKILAGKL---------E---------FPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKN 253 (291)
T ss_pred CH--HHHHHHHHhCCc---------C---------CCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhc
Confidence 21 111111111100 0 01122345789999999999999995 666654
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=210.71 Aligned_cols=186 Identities=24% Similarity=0.423 Sum_probs=143.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC------CCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH------NYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~------~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+..++.++|+|+++++++|......+++|||+++|+|.+++++. ...+++.++..++.++++|++|+|.
T Consensus 45 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~ 124 (269)
T cd05044 45 EFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQ 124 (269)
T ss_pred HHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHh
Confidence 4667899999999999999999998888899999999999999999752 2347888999999999999999994
Q ss_pred CCCCCCeeecCCCCcccc--------------------------------cccccccccCccccccCCCcCccccchhhH
Q 040540 522 GHSSAPIIHCEGEDSVTQ--------------------------------TTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~~~--------------------------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G 569 (669)
.+++|+|+++.... ....++..|+|||++.+..++.++||||||
T Consensus 125 ----~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG 200 (269)
T cd05044 125 ----MHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFG 200 (269)
T ss_pred ----CCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHH
Confidence 47999998843100 001235679999999888899999999999
Q ss_pred HHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 570 VLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 570 vil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
|++|||+| |+.||.... .......+.... . ...+...+..+.+++.+||+.+|++||++.
T Consensus 201 ~il~ellt~g~~p~~~~~--~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ 261 (269)
T cd05044 201 VLMWEILTLGQQPYPALN--NQEVLQHVTAGG--R---------------LQKPENCPDKIYQLMTNCWAQDPSERPTFD 261 (269)
T ss_pred HHHHHHHHcCCCCCcccC--HHHHHHHHhcCC--c---------------cCCcccchHHHHHHHHHHcCCCcccCCCHH
Confidence 99999998 999986422 111222211110 0 011223445678999999999999999999
Q ss_pred HHHHHHHH
Q 040540 649 DAAAKLKK 656 (669)
Q Consensus 649 ~v~~~l~~ 656 (669)
+|.+.|++
T Consensus 262 ~i~~~l~~ 269 (269)
T cd05044 262 RIQEILQN 269 (269)
T ss_pred HHHHHHhC
Confidence 99998863
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-24 Score=210.44 Aligned_cols=186 Identities=20% Similarity=0.333 Sum_probs=142.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++.+. .+..++||||+++|+|.+++... ..+++.....++.|++.|++|+|. .
T Consensus 41 ~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH~----~ 114 (257)
T cd05116 41 DELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELGPLNKFLQKN-KHVTEKNITELVHQVSMGMKYLEE----T 114 (257)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 45677889999999999999999875 44568999999999999999753 458899999999999999999994 4
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++... .....++..|+|||......++.++|||||||++|||+|
T Consensus 115 ~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~ 194 (257)
T cd05116 115 NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSY 194 (257)
T ss_pred CEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhC
Confidence 799999985310 001113468999999887888999999999999999998
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+...... . .+...+..+.+++.+||+.||++||+|.+|.++|+..
T Consensus 195 g~~p~~~~~~--~~~~~~i~~~~~~--------~---------~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~ 255 (257)
T cd05116 195 GQKPYKGMKG--NEVTQMIESGERM--------E---------CPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY 255 (257)
T ss_pred CCCCCCCCCH--HHHHHHHHCCCCC--------C---------CCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence 9999875321 1222222221100 0 0112345678999999999999999999999999763
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=209.82 Aligned_cols=187 Identities=23% Similarity=0.389 Sum_probs=145.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..+.|+|++++++++. ....+++|||+++|+|.+++.... .+++..+..++.+++.|++|||. .
T Consensus 41 ~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lh~----~ 114 (257)
T cd05060 41 KEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPLGPLLKYLKKRR-EIPVSDLKELAHQVAMGMAYLES----K 114 (257)
T ss_pred HHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHhh----c
Confidence 35667889999999999999999876 445689999999999999998644 68999999999999999999994 4
Q ss_pred CeeecCCCCccc---------------------c-------cccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT---------------------Q-------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------~-------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++... . ....++..|+|||......++.++|||||||++|||++
T Consensus 115 ~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~ 194 (257)
T cd05060 115 HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSY 194 (257)
T ss_pred CeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcC
Confidence 799999985410 0 00012457999999988889999999999999999998
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+..++....+. +.+...+..+.+++.+||..+|++||++.++++.|+++
T Consensus 195 g~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 255 (257)
T cd05060 195 GAKPYGEMK--GAEVIAMLESGERL-----------------PRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD 255 (257)
T ss_pred CCCCcccCC--HHHHHHHHHcCCcC-----------------CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence 999987532 22233333222110 01122345678999999999999999999999999876
Q ss_pred H
Q 040540 658 K 658 (669)
Q Consensus 658 ~ 658 (669)
.
T Consensus 256 ~ 256 (257)
T cd05060 256 P 256 (257)
T ss_pred c
Confidence 4
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=208.61 Aligned_cols=185 Identities=25% Similarity=0.401 Sum_probs=144.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++.|......++||||+++++|.+++......+++.....++.+++.|+.|+|. .+
T Consensus 38 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~----~~ 113 (250)
T cd05085 38 KFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLES----KN 113 (250)
T ss_pred HHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 46678899999999999999999998888999999999999999997655568899999999999999999994 47
Q ss_pred eeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCC
Q 040540 528 IIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKR 580 (669)
Q Consensus 528 i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~ 580 (669)
++|+|+++... .....++..|+|||+..+..++.++|||||||++||+++ |..
T Consensus 114 ~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~ 193 (250)
T cd05085 114 CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVC 193 (250)
T ss_pred eeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCC
Confidence 99999985310 000123456999999988889999999999999999999 999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
||..... ......+...... ..+...+..+.+++.+|++.+|++||++.|++++|+
T Consensus 194 p~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 249 (250)
T cd05085 194 PYPGMTN--QQAREQVEKGYRM-----------------SCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred CCCCCCH--HHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence 9865321 1111111111000 001123456789999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=215.49 Aligned_cols=193 Identities=23% Similarity=0.390 Sum_probs=147.8
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHHh
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMID 511 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~~ 511 (669)
.+..|+..+..+ +|+|+++++++|......++||||+++|+|.+++...+ ..+++.++.+++.+
T Consensus 69 ~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q 148 (307)
T cd05098 69 DLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQ 148 (307)
T ss_pred HHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHH
Confidence 456688888888 79999999999998889999999999999999997532 24788999999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCccc-------------------------ccc--cccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSVT-------------------------QTT--TMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~~-------------------------~~~--~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
++.|++|||. .+++|+|+++... ... ..++..|+|||+..+..++.++|
T Consensus 149 i~~aL~~lH~----~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D 224 (307)
T cd05098 149 VARGMEYLAS----KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSD 224 (307)
T ss_pred HHHHHHHHHH----CCcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHH
Confidence 9999999994 4899999985310 000 11345799999998888999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||++|||++ |+.||..... ..+...+...... +.+......+.+++.+||..+|++
T Consensus 225 vwslG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~ 285 (307)
T cd05098 225 VWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLKEGHRM-----------------DKPSNCTNELYMMMRDCWHAVPSQ 285 (307)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCH--HHHHHHHHcCCCC-----------------CCCCcCCHHHHHHHHHHcccChhh
Confidence 9999999999998 8888754211 1111111111100 011233456789999999999999
Q ss_pred CCCHHHHHHHHHHhHHHhhh
Q 040540 644 RMHMTDAAAKLKKIKVKFLD 663 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~~~~ 663 (669)
||+|.+|++.|+++.+....
T Consensus 286 Rps~~evl~~l~~~~~~~~~ 305 (307)
T cd05098 286 RPTFKQLVEDLDRILALTSN 305 (307)
T ss_pred CcCHHHHHHHHHHHHHHhhc
Confidence 99999999999998876443
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-24 Score=212.97 Aligned_cols=186 Identities=20% Similarity=0.363 Sum_probs=142.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---------CccCHHHHHHHHHhHHhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------~~l~~~~~~~i~~~i~~~l~~ 518 (669)
.+..|+..+..++|+|++++++.+......++||||+++|+|.+++++.. ...++.....++.++++|++|
T Consensus 55 ~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 134 (277)
T cd05062 55 EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAY 134 (277)
T ss_pred HHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence 46678889999999999999999988888999999999999999997522 235778888999999999999
Q ss_pred hhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
||. .+++|+|+|+... .....++..|||||++.+..++.++|||||||+
T Consensus 135 lH~----~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~ 210 (277)
T cd05062 135 LNA----NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 210 (277)
T ss_pred HHH----CCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHH
Confidence 994 4799999985410 001124667999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+|||++ |..||..... ....+.+.... .. .. +...+..+.+++.+||+.+|++||++.|+
T Consensus 211 l~el~~~~~~p~~~~~~--~~~~~~~~~~~---~~-----~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~e~ 271 (277)
T cd05062 211 LWEIATLAEQPYQGMSN--EQVLRFVMEGG---LL-----DK---------PDNCPDMLFELMRMCWQYNPKMRPSFLEI 271 (277)
T ss_pred HHHHHcCCCCCCCCCCH--HHHHHHHHcCC---cC-----CC---------CCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 999999 6888865321 11222211110 00 00 11233467899999999999999999999
Q ss_pred HHHHHH
Q 040540 651 AAKLKK 656 (669)
Q Consensus 651 ~~~l~~ 656 (669)
++.|++
T Consensus 272 l~~l~~ 277 (277)
T cd05062 272 ISSIKE 277 (277)
T ss_pred HHHhhC
Confidence 998863
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=213.96 Aligned_cols=188 Identities=24% Similarity=0.415 Sum_probs=144.9
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcC---------------CCccCHHHHHHHHHh
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---------------NYFLDILERLNIMID 511 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---------------~~~l~~~~~~~i~~~ 511 (669)
.+..|+..+..+ +|+|++++++++......+++|||+++|+|.++++.. ...+++..+.+++.|
T Consensus 61 ~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~q 140 (293)
T cd05053 61 DLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQ 140 (293)
T ss_pred HHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHH
Confidence 466788888888 7999999999999888899999999999999999632 245788999999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
++.|+.|||. .+++|+|+++... .....++..|+|||+..+..++.++|
T Consensus 141 i~~al~~LH~----~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D 216 (293)
T cd05053 141 VARGMEFLAS----KKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSD 216 (293)
T ss_pred HHHHHHHHHH----CCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccc
Confidence 9999999994 4799999985410 00012346799999988888999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||++||+++ |..||..... ..+.+........ ..+..+...+.+++.+||..+|++
T Consensus 217 i~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~ 277 (293)
T cd05053 217 VWSFGVLLWEIFTLGGSPYPGIPV--EELFKLLKEGYRM-----------------EKPQNCTQELYHLMRDCWHEVPSQ 277 (293)
T ss_pred eeehhhHHHHHhcCCCCCCCCCCH--HHHHHHHHcCCcC-----------------CCCCCCCHHHHHHHHHHcccCccc
Confidence 9999999999998 8888865321 1122211111100 011223456789999999999999
Q ss_pred CCCHHHHHHHHHHhH
Q 040540 644 RMHMTDAAAKLKKIK 658 (669)
Q Consensus 644 Rps~~~v~~~l~~~~ 658 (669)
||||.|+++.|+++.
T Consensus 278 Rps~~eil~~l~~~~ 292 (293)
T cd05053 278 RPTFKQLVEDLDRML 292 (293)
T ss_pred CcCHHHHHHHHHHhh
Confidence 999999999998864
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=208.80 Aligned_cols=189 Identities=20% Similarity=0.365 Sum_probs=141.9
Q ss_pred ccCchhhhhhccccccccceecccccc-ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|...++.++|||++++++.|.. +...++++||+++|+|.+++.+......+.....++.++++|+.|||.
T Consensus 41 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---- 116 (262)
T cd05058 41 EQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLAS---- 116 (262)
T ss_pred HHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 356678888999999999999997753 556789999999999999998655557788889999999999999994
Q ss_pred CCeeecCCCCccc---------------c--------------cccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 526 APIIHCEGEDSVT---------------Q--------------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 526 ~~i~h~d~~~~~~---------------~--------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+++... . ....++..|+|||+.....++.++|||||||++|||+
T Consensus 117 ~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~ 196 (262)
T cd05058 117 KKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 196 (262)
T ss_pred CCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHH
Confidence 4799999985410 0 0112456799999998888999999999999999999
Q ss_pred hC-CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 TR-KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 tg-~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+| ..||... ....+...+....+... +...+..+.+++.+||..+|++||++.||++.|+
T Consensus 197 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~ 257 (262)
T cd05058 197 TRGAPPYPDV--DSFDITVYLLQGRRLLQ-----------------PEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIE 257 (262)
T ss_pred cCCCCCCCCC--CHHHHHHHHhcCCCCCC-----------------CCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHH
Confidence 95 5555432 11222222211110000 1112345789999999999999999999999998
Q ss_pred HhH
Q 040540 656 KIK 658 (669)
Q Consensus 656 ~~~ 658 (669)
++.
T Consensus 258 ~~~ 260 (262)
T cd05058 258 QIF 260 (262)
T ss_pred HHh
Confidence 874
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-24 Score=216.55 Aligned_cols=196 Identities=23% Similarity=0.373 Sum_probs=150.9
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCcc-CHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL-DILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l-~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.++|..|+.++.+++||||++++|.|..++..++++|||.+|+|.+++.++..+. +-....+|+.|||.|++||.
T Consensus 579 r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLe---- 654 (807)
T KOG1094|consen 579 RNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLE---- 654 (807)
T ss_pred HHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHH----
Confidence 3578899999999999999999999999999999999999999999998754333 45566789999999999995
Q ss_pred CCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 525 SAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
+..++|||+.... ....++-..+|||||.+.-++++.++|||+|||++||+++
T Consensus 655 s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~ 734 (807)
T KOG1094|consen 655 SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFM 734 (807)
T ss_pred hhchhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHH
Confidence 5689999987320 0011123468999999999999999999999999999976
Q ss_pred --CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 578 --RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 578 --g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
...||.....+ +..+-..+.++......+. +.+.-++..+.+++.+||..|..+||+++++..-|+
T Consensus 735 ~C~e~Py~~lt~e--~vven~~~~~~~~~~~~~l----------~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq 802 (807)
T KOG1094|consen 735 LCREQPYSQLTDE--QVVENAGEFFRDQGRQVVL----------SRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQ 802 (807)
T ss_pred HHhhCchhhhhHH--HHHHhhhhhcCCCCcceec----------cCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHH
Confidence 57798765332 2333333333322222221 124456778889999999999999999999988877
Q ss_pred Hh
Q 040540 656 KI 657 (669)
Q Consensus 656 ~~ 657 (669)
+.
T Consensus 803 ~~ 804 (807)
T KOG1094|consen 803 ED 804 (807)
T ss_pred Hh
Confidence 54
|
|
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-24 Score=227.66 Aligned_cols=193 Identities=21% Similarity=0.272 Sum_probs=152.3
Q ss_pred cccccCchhhhhhcccc-ccccceeccc-ccc------ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHh
Q 040540 444 LAFRSFDSECEVLRNVR-HRNLIKIISS-CSN------PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGS 514 (669)
Q Consensus 444 ~~~~~~~~e~~~l~~l~-h~niv~l~~~-~~~------~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~ 514 (669)
...+...+|+.+|+.++ |+|||.+++. ... ..++.|.||||++|.|-+++..+ ...+.+.+.++|+.|+++
T Consensus 76 ~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~ 155 (738)
T KOG1989|consen 76 EALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCE 155 (738)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 34566788999999997 9999999993 322 24567899999999999999742 224899999999999999
Q ss_pred hhhhhhcCCCCCCeeecCCCCcc----------------------cc------------cccccccccCcccccc---CC
Q 040540 515 ALEYLRHGHSSAPIIHCEGEDSV----------------------TQ------------TTTMATIGYMAPEYGS---EG 557 (669)
Q Consensus 515 ~l~~lh~~~~~~~i~h~d~~~~~----------------------~~------------~~~~gt~~y~aPE~~~---~~ 557 (669)
|+++||. +.+||||||+|-.. .. .....|+-|+|||+++ +.
T Consensus 156 AVa~mH~--~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~ 233 (738)
T KOG1989|consen 156 AVAAMHY--LKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGL 233 (738)
T ss_pred HHHHHhc--CCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCC
Confidence 9999995 58999999999320 00 0112589999999874 45
Q ss_pred CcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcc
Q 040540 558 IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCC 637 (669)
Q Consensus 558 ~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~ 637 (669)
..++|+||||+||+||.++..+.||+... . -+|....+.+|..+..+..+.+||..|+
T Consensus 234 pI~eKsDIWALGclLYkLCy~t~PFe~sg--~--------------------laIlng~Y~~P~~p~ys~~l~~LI~~mL 291 (738)
T KOG1989|consen 234 PIGEKSDIWALGCLLYKLCYFTTPFEESG--K--------------------LAILNGNYSFPPFPNYSDRLKDLIRTML 291 (738)
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCcCcCc--c--------------------eeEEeccccCCCCccHHHHHHHHHHHHh
Confidence 68999999999999999999999997631 1 1222333444555678889999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhHHH
Q 040540 638 MESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 638 ~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
+.||++||.+.+|+..+.++..+
T Consensus 292 ~~nP~~RPnI~Qv~~~~~~l~~~ 314 (738)
T KOG1989|consen 292 QPNPDERPNIYQVLEEIFELANK 314 (738)
T ss_pred ccCcccCCCHHHHHHHHHHHhcC
Confidence 99999999999999998887644
|
|
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=217.62 Aligned_cols=133 Identities=23% Similarity=0.256 Sum_probs=115.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|+++++++|...+..++||||+++|+|.+++... ..+++.....++.++++|+.|||+. .+
T Consensus 49 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~l~~~l~~lH~~---~~ 124 (333)
T cd06650 49 QIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREK---HK 124 (333)
T ss_pred HHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 4667999999999999999999999999999999999999999999754 4578888889999999999999952 46
Q ss_pred eeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 528 IIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
++|+|+|+.. ......||..|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 125 ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~ 204 (333)
T cd06650 125 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP 204 (333)
T ss_pred EEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 9999998531 01122478899999999888899999999999999999999999865
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-24 Score=215.77 Aligned_cols=199 Identities=16% Similarity=0.096 Sum_probs=140.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|+|++++++.+...+..++||||++++.+..+.. ....+++.....++.+++.|+.|||. .+
T Consensus 46 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~----~~ 120 (287)
T cd07848 46 TTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEE-MPNGVPPEKVRSYIYQLIKAIHWCHK----ND 120 (287)
T ss_pred hHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45578999999999999999999998899999999999877665543 34568888999999999999999994 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+|+.. ......||..|+|||++.+..++.++|||||||++|||++|+.|
T Consensus 121 i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~p 200 (287)
T cd07848 121 IVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPL 200 (287)
T ss_pred eecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCC
Confidence 9999998430 00122488999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHH--HHHHhCCC----------Cccccccccccc-hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 582 TDEMFTGEMSLRR--WVKESLPH----------RLSEVVDTNLVR-EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 582 ~~~~~~~~~~l~~--~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
|....... .+.. ......+. .......+.... ...........+..+.+++.+|++.||++|||++
T Consensus 201 f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~ 279 (287)
T cd07848 201 FPGESEID-QLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTE 279 (287)
T ss_pred CCCCCHHH-HHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHH
Confidence 97532111 1111 00000000 000000000000 0000011123456789999999999999999999
Q ss_pred HHHH
Q 040540 649 DAAA 652 (669)
Q Consensus 649 ~v~~ 652 (669)
|+++
T Consensus 280 ~~l~ 283 (287)
T cd07848 280 QCLN 283 (287)
T ss_pred HHhc
Confidence 9874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=212.22 Aligned_cols=185 Identities=23% Similarity=0.375 Sum_probs=142.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC------CccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN------YFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~------~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+..++.++|+|++++++++......++||||+++++|.+++...+ ..+++..+..++.++++|++|||.
T Consensus 55 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~ 134 (277)
T cd05036 55 DFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEE 134 (277)
T ss_pred HHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999888888899999999999999997532 258899999999999999999994
Q ss_pred CCCCCCeeecCCCCccccc------------------------------ccccccccCccccccCCCcCccccchhhHHH
Q 040540 522 GHSSAPIIHCEGEDSVTQT------------------------------TTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~~~~------------------------------~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
.+++|+|+++..... ...++..|+|||++.+..++.++|||||||+
T Consensus 135 ----~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~i 210 (277)
T cd05036 135 ----NHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVL 210 (277)
T ss_pred ----CCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHH
Confidence 479999998541000 0011346999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+|||++ |+.||...... .+...+...... ..+...+..+.+++.+|++.+|++||++.+|
T Consensus 211 l~el~~~g~~pf~~~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~v 271 (277)
T cd05036 211 LWEIFSLGYMPYPGRTNQ--EVMEFVTGGGRL-----------------DPPKGCPGPVYRIMTDCWQHTPEDRPNFATI 271 (277)
T ss_pred HHHHHcCCCCCCCCCCHH--HHHHHHHcCCcC-----------------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 999997 99998753211 122211111000 0011233567899999999999999999999
Q ss_pred HHHHH
Q 040540 651 AAKLK 655 (669)
Q Consensus 651 ~~~l~ 655 (669)
++.|+
T Consensus 272 l~~l~ 276 (277)
T cd05036 272 LERIQ 276 (277)
T ss_pred HHHhh
Confidence 99875
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-23 Score=211.61 Aligned_cols=187 Identities=22% Similarity=0.418 Sum_probs=143.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC----------------CCccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH----------------NYFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~----------------~~~l~~~~~~~i~~ 510 (669)
..+..|+..++.++|+|++++++++......+++|||+++|+|.+++... ...+++.+...++.
T Consensus 52 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 131 (283)
T cd05090 52 GEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAI 131 (283)
T ss_pred HHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHH
Confidence 35667999999999999999999998888899999999999999998532 12477888899999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
++++|++|||+ .+++|+|+++... .....++..|+|||+..+..++.++
T Consensus 132 ~i~~al~~lH~----~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 207 (283)
T cd05090 132 QIAAGMEYLSS----HFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDS 207 (283)
T ss_pred HHHHHHHHHHh----cCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchh
Confidence 99999999995 4799999985410 0111245579999999888899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||++ |..||.... ...+.+.+...... +.+......+.+++.+||+.||+
T Consensus 208 Dv~slG~il~el~~~g~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~cl~~~p~ 268 (283)
T cd05090 208 DIWSFGVVLWEIFSFGLQPYYGFS--NQEVIEMVRKRQLL-----------------PCSEDCPPRMYSLMTECWQEGPS 268 (283)
T ss_pred hhHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHHcCCcC-----------------CCCCCCCHHHHHHHHHHcccCcc
Confidence 99999999999999 888986522 11122222211100 00112335678899999999999
Q ss_pred CCCCHHHHHHHHHH
Q 040540 643 KRMHMTDAAAKLKK 656 (669)
Q Consensus 643 ~Rps~~~v~~~l~~ 656 (669)
+||++.+|.+.|+.
T Consensus 269 ~Rp~~~~i~~~l~~ 282 (283)
T cd05090 269 RRPRFKDIHTRLRS 282 (283)
T ss_pred cCcCHHHHHHHhhc
Confidence 99999999998864
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=211.35 Aligned_cols=187 Identities=24% Similarity=0.416 Sum_probs=143.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC--------------CccCHHHHHHHHHhH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--------------YFLDILERLNIMIDV 512 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~l~~~~~~~i~~~i 512 (669)
..+..|+..+..++|+|++++++++......+++|||+++|+|.++++... ..+++..+..++.|+
T Consensus 52 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi 131 (280)
T cd05092 52 QDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQI 131 (280)
T ss_pred HHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHH
Confidence 357778999999999999999999988888899999999999999997532 247889999999999
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDV 565 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv 565 (669)
+.|++|||. .+++|+|+++... .....+++.|+|||...+..++.++||
T Consensus 132 ~~al~~LH~----~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di 207 (280)
T cd05092 132 ASGMVYLAS----LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDI 207 (280)
T ss_pred HHHHHHHHH----CCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhH
Confidence 999999994 4799999985310 001123567999999988889999999
Q ss_pred hhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 566 YSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 566 ~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|||||++|||++ |+.||..... ...........+.. .+..++..+.+++.+||+.||++|
T Consensus 208 ~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~cl~~~P~~R 268 (280)
T cd05092 208 WSFGVVLWEIFTYGKQPWYQLSN--TEAIECITQGRELE-----------------RPRTCPPEVYAIMQGCWQREPQQR 268 (280)
T ss_pred HHHHHHHHHHHcCCCCCCccCCH--HHHHHHHHcCccCC-----------------CCCCCCHHHHHHHHHHccCChhhC
Confidence 999999999999 8989865321 11111111110000 011233457899999999999999
Q ss_pred CCHHHHHHHHHH
Q 040540 645 MHMTDAAAKLKK 656 (669)
Q Consensus 645 ps~~~v~~~l~~ 656 (669)
|++.||.+.|++
T Consensus 269 p~~~~l~~~l~~ 280 (280)
T cd05092 269 MVIKDIHSRLQA 280 (280)
T ss_pred CCHHHHHHHHhC
Confidence 999999998863
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=220.58 Aligned_cols=189 Identities=19% Similarity=0.332 Sum_probs=144.5
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCC-----------------------------
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----------------------------- 497 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----------------------------- 497 (669)
.+..|+.++..+. |+|+++++++|......++||||+++|+|.++++..+
T Consensus 86 ~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (401)
T cd05107 86 ALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRK 165 (401)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccc
Confidence 4667899999997 9999999999999889999999999999999996421
Q ss_pred --------------------------------------------------------------------CccCHHHHHHHH
Q 040540 498 --------------------------------------------------------------------YFLDILERLNIM 509 (669)
Q Consensus 498 --------------------------------------------------------------------~~l~~~~~~~i~ 509 (669)
..+++....+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 245 (401)
T cd05107 166 SHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFS 245 (401)
T ss_pred cchhhhhccCccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHH
Confidence 135667788899
Q ss_pred HhHHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCcc
Q 040540 510 IDVGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 510 ~~i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.++++|++|||. .+++|+|+|+... .....|+..|||||.+....++.+
T Consensus 246 ~qi~~aL~~LH~----~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~ 321 (401)
T cd05107 246 YQVANGMEFLAS----KNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTL 321 (401)
T ss_pred HHHHHHHHHHhc----CCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcH
Confidence 999999999994 4799999985310 011235678999999988889999
Q ss_pred ccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 563 CDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 563 ~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
+|||||||++|||++ |+.||....... .....+....+. +.+......+.+++.+||..+|
T Consensus 322 ~DvwslGvil~e~l~~g~~P~~~~~~~~-~~~~~~~~~~~~-----------------~~p~~~~~~l~~li~~cl~~~P 383 (401)
T cd05107 322 SDVWSFGILLWEIFTLGGTPYPELPMNE-QFYNAIKRGYRM-----------------AKPAHASDEIYEIMQKCWEEKF 383 (401)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCchH-HHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcCCCh
Confidence 999999999999998 888986532111 111111111100 0112234568899999999999
Q ss_pred CCCCCHHHHHHHHHHhH
Q 040540 642 DKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 642 ~~Rps~~~v~~~l~~~~ 658 (669)
.+||+++|+++.|+++.
T Consensus 384 ~~RPs~~ell~~L~~~~ 400 (401)
T cd05107 384 EIRPDFSQLVHLVGDLL 400 (401)
T ss_pred hHCcCHHHHHHHHHHHh
Confidence 99999999999998864
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=208.64 Aligned_cols=187 Identities=26% Similarity=0.356 Sum_probs=143.0
Q ss_pred cCchhhhhhccccccccceeccccc-cccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|+..++.++|++++++++++. .....+++|||+++++|.+++++.. ..+++.....++.+++.|++|||.
T Consensus 45 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---- 120 (256)
T cd05082 45 AFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEA---- 120 (256)
T ss_pred HHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 4667899999999999999998764 4556789999999999999997643 347899999999999999999994
Q ss_pred CCeeecCCCCccc----------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCC
Q 040540 526 APIIHCEGEDSVT----------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPT 582 (669)
Q Consensus 526 ~~i~h~d~~~~~~----------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~ 582 (669)
.+++|+|+++... .....++..|+|||+.....++.++|||||||++|||++ |+.||
T Consensus 121 ~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~ 200 (256)
T cd05082 121 NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 200 (256)
T ss_pred CCEeccccchheEEEcCCCcEEecCCccceeccccCCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCC
Confidence 4799999985410 011123557999999988889999999999999999998 99998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
.... ...+...+....+.. .+..++..+.+++.+||+.+|++|||+.++++.|+++
T Consensus 201 ~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~ 256 (256)
T cd05082 201 PRIP--LKDVVPRVEKGYKMD-----------------APDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI 256 (256)
T ss_pred CCCC--HHHHHHHHhcCCCCC-----------------CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence 6421 111222222111110 0123345678999999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-24 Score=219.79 Aligned_cols=180 Identities=17% Similarity=0.129 Sum_probs=140.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.+++.+. ..+++.....++.+++.|++|||. .+
T Consensus 77 ~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~~ 151 (340)
T PTZ00426 77 HVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRN-KRFPNDVGCFYAAQIVLIFEYLQS----LN 151 (340)
T ss_pred HHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567899999999999999999999999999999999999999999754 458888899999999999999994 47
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
++|||+|+.. ......||+.|||||++.+..++.++|||||||++|||+||+.||...
T Consensus 152 ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~ 231 (340)
T PTZ00426 152 IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN 231 (340)
T ss_pred eEccCCCHHHEEECCCCCEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC
Confidence 9999999430 112235899999999998888999999999999999999999999753
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
.. .....-+.... . .. +......+.+++.+|++.||.+|+ +++++++
T Consensus 232 ~~--~~~~~~i~~~~---~--~~-------------p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~ 283 (340)
T PTZ00426 232 EP--LLIYQKILEGI---I--YF-------------PKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKE 283 (340)
T ss_pred CH--HHHHHHHhcCC---C--CC-------------CCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence 21 11111111100 0 00 111234567999999999999995 7877765
|
|
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=208.86 Aligned_cols=190 Identities=22% Similarity=0.352 Sum_probs=146.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++.|.. ...++||||+++|+|.+++......+++..+..++.++++|++|+|. .
T Consensus 52 ~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~----~ 126 (270)
T cd05056 52 EKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLES----K 126 (270)
T ss_pred HHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 356779999999999999999998865 55689999999999999998655568999999999999999999994 4
Q ss_pred CeeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+++... .....++..|+|||.+....++.++|||||||++||+++ |+
T Consensus 127 ~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~ 206 (270)
T cd05056 127 RFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGV 206 (270)
T ss_pred CeeccccChheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCC
Confidence 799999985410 000113457999999888889999999999999999986 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||...... ....+....... +.+..++..+.+++.+|+..+|++|||+.+++..|++++.
T Consensus 207 ~pf~~~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~ 267 (270)
T cd05056 207 KPFQGVKNN--DVIGRIENGERL-----------------PMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ 267 (270)
T ss_pred CCCCCCCHH--HHHHHHHcCCcC-----------------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 998653221 122222211100 0112334568899999999999999999999999999875
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 268 ~ 268 (270)
T cd05056 268 E 268 (270)
T ss_pred c
Confidence 4
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=210.88 Aligned_cols=191 Identities=19% Similarity=0.332 Sum_probs=147.5
Q ss_pred ccCchhhhhhccccccccceecccccc-ccccceeeccCCCCChHHhhhcCC-------CccCHHHHHHHHHhHHhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSHN-------YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~-------~~l~~~~~~~i~~~i~~~l~~ 518 (669)
..+..|...+..++|+|++++++++.. +...++++||+++|+|.+++.... ..+++..+..++.+++.|++|
T Consensus 53 ~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~ 132 (280)
T cd05043 53 TLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSY 132 (280)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999998766 467789999999999999986532 458899999999999999999
Q ss_pred hhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
||. .+++|+|+++... .....++..|+|||+.....++.++|||||||+
T Consensus 133 LH~----~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~ 208 (280)
T cd05043 133 LHK----RGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVL 208 (280)
T ss_pred HHH----CCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHH
Confidence 994 4799999985310 001124567999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+||+++ |+.||... ....+..++....... .+..++..+.+++.+||..+|++|||+.+|
T Consensus 209 l~el~~~g~~p~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~~ 269 (280)
T cd05043 209 LWELMTLGQTPYVEI--DPFEMAAYLKDGYRLA-----------------QPINCPDELFAVMACCWALDPEERPSFSQL 269 (280)
T ss_pred HHHHhcCCCCCcCcC--CHHHHHHHHHcCCCCC-----------------CCCcCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 999999 99998653 2222333333221100 011233467899999999999999999999
Q ss_pred HHHHHHhHHH
Q 040540 651 AAKLKKIKVK 660 (669)
Q Consensus 651 ~~~l~~~~~~ 660 (669)
++.|+++..+
T Consensus 270 ~~~l~~~~~~ 279 (280)
T cd05043 270 VQCLTDFHAQ 279 (280)
T ss_pred HHHHHHHHhc
Confidence 9999998754
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=207.62 Aligned_cols=192 Identities=22% Similarity=0.268 Sum_probs=148.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
..+..|+..+++++|++++++++.+...+..+++|||+++|+|.+++.+ .+..+++.+...++.++++|+.|||.
T Consensus 47 ~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~-- 124 (267)
T cd08224 47 QDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS-- 124 (267)
T ss_pred HHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHh--
Confidence 3466788999999999999999999888889999999999999999864 23457889999999999999999994
Q ss_pred CCCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 524 SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......|+..|+|||+..+..++.++|||||||++|||++|
T Consensus 125 --~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g 202 (267)
T cd08224 125 --KRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 202 (267)
T ss_pred --CCEecCCcChhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHC
Confidence 489999988431 01113478889999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ....+.......... +... .......+.+++.+||..+|++||++.+|+++++++.
T Consensus 203 ~~p~~~~~---~~~~~~~~~~~~~~~-----~~~~--------~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~ 266 (267)
T cd08224 203 QSPFYGDK---MNLYSLCKKIEKCDY-----PPLP--------ADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH 266 (267)
T ss_pred CCCcccCC---ccHHHHHhhhhcCCC-----CCCC--------hhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence 99985422 222222211110000 0000 1133456789999999999999999999999998864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=234.08 Aligned_cols=357 Identities=19% Similarity=0.230 Sum_probs=242.9
Q ss_pred CCEEEEEcCCCCCcc--cccccccCCCCCCEEeCCCCc------CcccCCcccCCCC-CCCEEEccCCcCCccCCccccC
Q 040540 51 QRVTALNLSDMGLGG--TIPLHFGNLSFLVSLDISENN------FHGHLPKELGQLR-RLRVMSLAYNKLSGSFPSWIGV 121 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~--~~~~~~~~l~~L~~L~Ls~N~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~ 121 (669)
.+|+.+.+....+.. ..+..|..+.+|+.|.+..+. +...+|..|..++ +|+.|.+.+|.+. .+|..| .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 345555544333322 223458888888888886653 2335666666654 6888888888876 667766 4
Q ss_pred CcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEE
Q 040540 122 LSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLD 201 (669)
Q Consensus 122 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 201 (669)
+.+|+.|+|++|++. .+|..+..+++|+.|+++++...+.+|. ++.+++|+.|++++|.....+|..++.+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 688888888888876 5677778888888888887765566664 77888888888888887778888888888888888
Q ss_pred ccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCcc
Q 040540 202 LADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS 281 (669)
Q Consensus 202 l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 281 (669)
+++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.|++..+...
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 88876555667655 7888888888888655555542 457888888888764 455544 4667777776653211
Q ss_pred -------ccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhcccccc
Q 040540 282 -------GHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNI 354 (669)
Q Consensus 282 -------~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l 354 (669)
...+..+...++|+.|++++|..... .+..+.++++|+.|++++|...+.+|... .+++|
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--------lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-----~L~sL 827 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--------LPSSIQNLHKLEHLEIENCINLETLPTGI-----NLESL 827 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccc--------cChhhhCCCCCCEEECCCCCCcCeeCCCC-----Ccccc
Confidence 11122223345777777776643221 12345677788888888775544555432 35667
Q ss_pred ceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCC
Q 040540 355 YAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSN 434 (669)
Q Consensus 355 ~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N 434 (669)
+.+++++|.....+|.. ..+|+.|++++|.+. .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus 828 ~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 77777776554444432 246778888888776 46777778888888888886555567777777788888888776
Q ss_pred c
Q 040540 435 K 435 (669)
Q Consensus 435 ~ 435 (669)
.
T Consensus 904 ~ 904 (1153)
T PLN03210 904 G 904 (1153)
T ss_pred c
Confidence 4
|
syringae 6; Provisional |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=210.94 Aligned_cols=186 Identities=18% Similarity=0.165 Sum_probs=140.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+.++..++|++++++.+.+......++||||+++|+|.+++.. ....+++.....++.|+++|++|||+
T Consensus 38 ~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~-- 115 (280)
T cd05608 38 EGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQ-- 115 (280)
T ss_pred HHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 3455688899999999999999998888889999999999999988753 23468899999999999999999995
Q ss_pred CCCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 524 SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......||+.|+|||++.+..++.++|||||||++|||++|
T Consensus 116 --~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g 193 (280)
T cd05608 116 --RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAA 193 (280)
T ss_pred --CCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhC
Confidence 479999998430 01122588999999999988899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
+.||....... ............ .. ..+...+..+.+++.+|++.||++|| +++++++
T Consensus 194 ~~pf~~~~~~~-~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~ 256 (280)
T cd05608 194 RGPFRARGEKV-ENKELKQRILND--------SV-------TYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT 256 (280)
T ss_pred CCCCCCCCcch-hHHHHHHhhccc--------CC-------CCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence 99997532111 111111111110 00 01123345678999999999999999 5566654
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=211.92 Aligned_cols=194 Identities=20% Similarity=0.349 Sum_probs=142.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-----------CccCHHHHHHHHHhHHhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-----------YFLDILERLNIMIDVGSA 515 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------~~l~~~~~~~i~~~i~~~ 515 (669)
..+..|+..+.+++|+|++++++++......++||||+++++|.+++.... ..+++..+..++.++++|
T Consensus 62 ~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~a 141 (295)
T cd05097 62 NDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASG 141 (295)
T ss_pred HHHHHHHHHHHhCCCCCcCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHH
Confidence 356779999999999999999999999999999999999999999996421 136788899999999999
Q ss_pred hhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhh
Q 040540 516 LEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 516 l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
++|||. .+++|+|+++... .....++..|+|||+.....++.++|||||
T Consensus 142 l~~lH~----~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSl 217 (295)
T cd05097 142 MKYLAS----LNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAF 217 (295)
T ss_pred HHHHHh----cCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHH
Confidence 999994 4799999985410 000123568999999988889999999999
Q ss_pred HHHHHHHHh--CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 569 GVLLMETFT--RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 569 Gvil~el~t--g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
||++|||++ |..||..... ......+............ .. .+...+..+.+++.+||+.+|++||+
T Consensus 218 G~~l~el~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~l~~li~~~l~~~p~~RPs 285 (295)
T cd05097 218 GVTLWEMFTLCKEQPYSLLSD--EQVIENTGEFFRNQGRQIY-LS---------QTPLCPSPVFKLMMRCWSRDIKDRPT 285 (295)
T ss_pred HHHHHHHHHcCCCCCCcccCh--HHHHHHHHHhhhhcccccc-CC---------CCCCCCHHHHHHHHHHcCCCchhCcC
Confidence 999999998 5567654221 1111111111110000000 00 01122346889999999999999999
Q ss_pred HHHHHHHHHH
Q 040540 647 MTDAAAKLKK 656 (669)
Q Consensus 647 ~~~v~~~l~~ 656 (669)
|.+|++.|++
T Consensus 286 ~~~i~~~l~~ 295 (295)
T cd05097 286 FNKIHHFLRE 295 (295)
T ss_pred HHHHHHHHhC
Confidence 9999998863
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=210.47 Aligned_cols=187 Identities=17% Similarity=0.209 Sum_probs=141.7
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
...|.+++..++|||++++++.+..+...++||||+++|+|.+++... ...+++.....++.+++.|++|||. .+
T Consensus 40 ~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~----~~ 115 (277)
T cd05607 40 ALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHS----MD 115 (277)
T ss_pred HHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 345888999999999999999998888999999999999999888653 3358889999999999999999995 48
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
++|+|+++.. ......||..|+|||++.+..++.++||||+||++|||++|+.||.
T Consensus 116 ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~ 195 (277)
T cd05607 116 IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFK 195 (277)
T ss_pred EEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCC
Confidence 9999998531 0112348899999999988889999999999999999999999986
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
..... .......+........ . ........+.+++.+|++.||++||+++|+++.+
T Consensus 196 ~~~~~-~~~~~~~~~~~~~~~~--------~------~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~ 251 (277)
T cd05607 196 DHKEK-VAKEELKRRTLEDEVK--------F------EHQNFTEESKDICRLFLAKKPEDRLGSREKNDDP 251 (277)
T ss_pred CCcch-hhHHHHHHHhhccccc--------c------ccccCCHHHHHHHHHHhccCHhhCCCCccchhhh
Confidence 53211 1111121211111100 0 0112344578999999999999999998776433
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=216.62 Aligned_cols=180 Identities=19% Similarity=0.183 Sum_probs=140.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++.+......++||||+++|+|.+++... ..+++.....++.+++.||+|||. .+
T Consensus 41 ~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~~ 115 (323)
T cd05595 41 HTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHS----RD 115 (323)
T ss_pred HHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4456888999999999999999998888999999999999999998753 458899999999999999999994 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 116 ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf 195 (323)
T cd05595 116 VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPF 195 (323)
T ss_pred eEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCC
Confidence 9999999430 011234899999999998888999999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
..... ..+...+. .... .+ +......+.+++.+|++.||++|| ++.++++
T Consensus 196 ~~~~~--~~~~~~~~---~~~~------~~---------p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~ 250 (323)
T cd05595 196 YNQDH--ERLFELIL---MEEI------RF---------PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 250 (323)
T ss_pred CCCCH--HHHHHHHh---cCCC------CC---------CCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence 65321 11111110 0000 00 112234578999999999999998 7777764
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=212.87 Aligned_cols=193 Identities=22% Similarity=0.367 Sum_probs=144.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC----------CccCHHHHHHHHHhHHhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----------YFLDILERLNIMIDVGSAL 516 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----------~~l~~~~~~~i~~~i~~~l 516 (669)
..+..|+.++..++|+|+++++++|......++++||+++++|.+++.+.. ..+++.....++.+++.|+
T Consensus 64 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al 143 (296)
T cd05051 64 EDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGM 143 (296)
T ss_pred HHHHHHHHHHHhcCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 456678999999999999999999988889999999999999999997533 2588999999999999999
Q ss_pred hhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhH
Q 040540 517 EYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569 (669)
Q Consensus 517 ~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G 569 (669)
+|||. .+++|+|+|+... .....++..|+|||+..+..++.++||||||
T Consensus 144 ~~LH~----~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG 219 (296)
T cd05051 144 RYLES----LNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFG 219 (296)
T ss_pred HHHHH----cCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhH
Confidence 99994 4799999985410 0011245689999999888899999999999
Q ss_pred HHHHHHHh--CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 570 VLLMETFT--RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 570 vil~el~t--g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|++|||++ |..|+.... .......+............ . +.+..++..+.+++.+|++.||++|||+
T Consensus 220 ~~l~el~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~l~~li~~cl~~~p~~Rpt~ 287 (296)
T cd05051 220 VTLWEILTLCREQPYEHLT--DQQVIENAGHFFRDDGRQIY---L-------PRPPNCPKDIYELMLECWRRDEEDRPTF 287 (296)
T ss_pred HHHHHHHhcCCCCCCCCcC--hHHHHHHHHhcccccccccc---C-------CCccCCCHHHHHHHHHHhccChhcCCCH
Confidence 99999998 667775432 11122222211110000000 0 0112233568999999999999999999
Q ss_pred HHHHHHHH
Q 040540 648 TDAAAKLK 655 (669)
Q Consensus 648 ~~v~~~l~ 655 (669)
.|+++.|+
T Consensus 288 ~el~~~L~ 295 (296)
T cd05051 288 REIHLFLQ 295 (296)
T ss_pred HHHHHHhc
Confidence 99999886
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=209.72 Aligned_cols=189 Identities=20% Similarity=0.275 Sum_probs=136.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC----CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|...+..++|+|++++++.+......++||||+++|+|.++++... ...++.....++.|+++|++|+|.
T Consensus 41 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-- 118 (269)
T cd05087 41 KFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK-- 118 (269)
T ss_pred HHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH--
Confidence 46678899999999999999999988888999999999999999997522 245677778899999999999994
Q ss_pred CCCCeeecCCCCcc----------------c-----------ccccccccccCccccccCC-------CcCccccchhhH
Q 040540 524 SSAPIIHCEGEDSV----------------T-----------QTTTMATIGYMAPEYGSEG-------IVSAKCDVYSYG 569 (669)
Q Consensus 524 ~~~~i~h~d~~~~~----------------~-----------~~~~~gt~~y~aPE~~~~~-------~~~~~~Dv~s~G 569 (669)
.+++|+|+|+.. . .....|+..|+|||++... .++.++||||||
T Consensus 119 --~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG 196 (269)
T cd05087 119 --NNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLG 196 (269)
T ss_pred --CCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHH
Confidence 479999998431 0 0012356789999987542 357899999999
Q ss_pred HHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 570 VLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 570 vil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
|++|||++ |+.||....... ...+...... ....++.+.. .....+.+++.+|| .+|++|||++
T Consensus 197 ~~l~el~~~g~~p~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~---------~~~~~~~~l~~~c~-~~P~~Rpt~~ 261 (269)
T cd05087 197 VTIWELFELGSQPYRHLSDEQ--VLTYTVREQQ---LKLPKPRLKL---------PLSDRWYEVMQFCW-LQPEQRPSAE 261 (269)
T ss_pred HHHHHHHhCCCCCCCCCChHH--HHHHHhhccc---CCCCCCccCC---------CCChHHHHHHHHHh-cCcccCCCHH
Confidence 99999997 999996532211 1111111111 1111111110 11234678899999 5899999999
Q ss_pred HHHHHHH
Q 040540 649 DAAAKLK 655 (669)
Q Consensus 649 ~v~~~l~ 655 (669)
||++.|+
T Consensus 262 ~l~~~l~ 268 (269)
T cd05087 262 EVHLLLS 268 (269)
T ss_pred HHHHHhc
Confidence 9998874
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=212.97 Aligned_cols=193 Identities=21% Similarity=0.383 Sum_probs=146.8
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHHh
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMID 511 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~~ 511 (669)
.+..|+..+..+ +|+|+++++++|......+++|||+++|+|.+++.... ..+++.+..+++.+
T Consensus 63 ~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q 142 (314)
T cd05099 63 DLISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQ 142 (314)
T ss_pred HHHHHHHHHHhccCCCCeeeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHH
Confidence 456788888888 69999999999988888999999999999999996521 34788899999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCccc---------------c------------cccccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSVT---------------Q------------TTTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------~------------~~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
++.|+.|+|. .+++|+|+++... . ....++..|||||++.+..++.++|
T Consensus 143 i~~aL~~lH~----~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D 218 (314)
T cd05099 143 VARGMEYLES----RRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSD 218 (314)
T ss_pred HHHHHHHHHH----CCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccch
Confidence 9999999994 4899999985410 0 0001235799999998888999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||++|||++ |+.||..... ..+......... . ..+..+...+.+++.+||..+|++
T Consensus 219 iwslG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~~---~--------------~~~~~~~~~l~~li~~cl~~~p~~ 279 (314)
T cd05099 219 VWSFGILMWEIFTLGGSPYPGIPV--EELFKLLREGHR---M--------------DKPSNCTHELYMLMRECWHAVPTQ 279 (314)
T ss_pred hhHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC---C--------------CCCCCCCHHHHHHHHHHcCCCccc
Confidence 9999999999999 8888865321 112221111100 0 001123346789999999999999
Q ss_pred CCCHHHHHHHHHHhHHHhhh
Q 040540 644 RMHMTDAAAKLKKIKVKFLD 663 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~~~~ 663 (669)
||++.|+++.|+++...+.+
T Consensus 280 Rps~~~ll~~l~~~~~~~~~ 299 (314)
T cd05099 280 RPTFKQLVEALDKVLAAVSE 299 (314)
T ss_pred CcCHHHHHHHHHHHHHHhcC
Confidence 99999999999998776533
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-23 Score=210.06 Aligned_cols=193 Identities=23% Similarity=0.399 Sum_probs=145.1
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+..++.++|+|++++.+++... ...++||||+++++|.+++.+....+++..+..++.+++.|++|+|.
T Consensus 51 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~--- 127 (284)
T cd05079 51 ADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGS--- 127 (284)
T ss_pred HHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 3567789999999999999999988764 56789999999999999997655568999999999999999999994
Q ss_pred CCCeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+++... .....|+..|+|||+..+..++.++|||||||++|||+
T Consensus 128 -~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ell 206 (284)
T cd05079 128 -RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELL 206 (284)
T ss_pred -CCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhh
Confidence 4899999984310 01123556799999988888999999999999999999
Q ss_pred hCCCCCCcCCC----------CCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 577 TRKRPTDEMFT----------GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 577 tg~~p~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
|++.|...... +......++...... .+.+.+...+..+.+++.+|++.+|++||+
T Consensus 207 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt 272 (284)
T cd05079 207 TYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEG--------------KRLPRPPNCPEEVYQLMRKCWEFQPSKRTT 272 (284)
T ss_pred cCCCCCccccchhhhhcccccccccHHHHHHHHHcC--------------ccCCCCCCCCHHHHHHHHHHccCCcccCcC
Confidence 98876533111 011111111110000 001112234567899999999999999999
Q ss_pred HHHHHHHHHHh
Q 040540 647 MTDAAAKLKKI 657 (669)
Q Consensus 647 ~~~v~~~l~~~ 657 (669)
+.++++.++++
T Consensus 273 ~~~il~~l~~~ 283 (284)
T cd05079 273 FQNLIEGFEAI 283 (284)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=208.75 Aligned_cols=186 Identities=21% Similarity=0.248 Sum_probs=144.8
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.+..|+..++.++|+|++++++.+......++++||+++++|.+++...+..+++.....++.++++|+.|||..
T Consensus 42 ~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~--- 118 (256)
T cd06612 42 LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN--- 118 (256)
T ss_pred HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 34677889999999999999999999988899999999999999999986667789999999999999999999954
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+++.. ......|+..|+|||+..+..++.++|||||||++|||++|+.
T Consensus 119 -~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~ 197 (256)
T cd06612 119 -KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKP 197 (256)
T ss_pred -CcccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCC
Confidence 78999987431 0111237889999999988889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|+........ ... + .. ...+.. ..+......+.+++.+||+.+|++|||+.||++
T Consensus 198 p~~~~~~~~~-~~~-~----~~----~~~~~~-------~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~ 252 (256)
T cd06612 198 PYSDIHPMRA-IFM-I----PN----KPPPTL-------SDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ 252 (256)
T ss_pred CCCCcchhhh-hhh-h----cc----CCCCCC-------CchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence 9875321110 000 0 00 000000 112233456789999999999999999999975
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-24 Score=218.35 Aligned_cols=179 Identities=20% Similarity=0.150 Sum_probs=138.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++.+...+..++||||+++|+|.+++.+. ..+++.....++.+++.||+|||. .+
T Consensus 64 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~~ 138 (329)
T PTZ00263 64 HVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKA-GRFPNDVAKFYHAELVLAFEYLHS----KD 138 (329)
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4667899999999999999999999999999999999999999999854 457888888899999999999994 47
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus 139 ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~ 218 (329)
T PTZ00263 139 IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDD 218 (329)
T ss_pred eeecCCCHHHEEECCCCCEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCC
Confidence 9999999431 011235899999999999888999999999999999999999998652
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAA 651 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~ 651 (669)
. .......+... .. . .+......+.+++.+||+.||.+||+ ++|++
T Consensus 219 ~--~~~~~~~i~~~---~~------~---------~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll 269 (329)
T PTZ00263 219 T--PFRIYEKILAG---RL------K---------FPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVK 269 (329)
T ss_pred C--HHHHHHHHhcC---Cc------C---------CCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHh
Confidence 1 11111111110 00 0 01112345689999999999999996 56665
|
|
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-23 Score=206.53 Aligned_cols=186 Identities=23% Similarity=0.380 Sum_probs=142.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..++|+|++++++++. ....+++|||+++|+|.++++.. ...+++..+..++.+++.|+.|||+
T Consensus 46 ~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---- 120 (260)
T cd05069 46 EAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIER---- 120 (260)
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 34667899999999999999988775 45678999999999999999753 3457899999999999999999995
Q ss_pred CCeeecCCCCccc--------------------c------cccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSVT--------------------Q------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~~--------------------~------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|+|+++... . ....++..|+|||+..+..++.++|||||||++|||+| |
T Consensus 121 ~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g 200 (260)
T cd05069 121 MNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKG 200 (260)
T ss_pred CCEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCC
Confidence 4799999984310 0 01124567999999988889999999999999999999 8
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
+.||..... .....+.....+. +.+.+.+..+.+++.+||+.+|++||++.+|.+.|++
T Consensus 201 ~~p~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 201 RVPYPGMVN--REVLEQVERGYRM-----------------PCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred CCCCCCCCH--HHHHHHHHcCCCC-----------------CCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 999865321 1122222221110 0112334567899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-23 Score=217.84 Aligned_cols=180 Identities=21% Similarity=0.207 Sum_probs=140.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++.+...+..++||||+++|+|.+++... ..+++.+...++.|++.|++|||. .+
T Consensus 41 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~----~~ 115 (328)
T cd05593 41 HTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRE-RVFSEDRTRFYGAEIVSALDYLHS----GK 115 (328)
T ss_pred HHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4566888999999999999999998888999999999999999998753 458899999999999999999994 48
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 116 ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf 195 (328)
T cd05593 116 IVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPF 195 (328)
T ss_pred eEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCC
Confidence 9999999430 011234899999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
..... . ........... .+ +......+.+++.+|++.||++|| ++.|+++
T Consensus 196 ~~~~~--~---~~~~~~~~~~~------~~---------p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~ 250 (328)
T cd05593 196 YNQDH--E---KLFELILMEDI------KF---------PRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMR 250 (328)
T ss_pred CCCCH--H---HHHHHhccCCc------cC---------CCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhc
Confidence 65221 1 11111100000 00 112234578999999999999997 7888875
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-23 Score=206.44 Aligned_cols=185 Identities=24% Similarity=0.401 Sum_probs=142.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..+++++|++++++++.+. ....+++|||+++++|.+++++. ...+++.++..++.+++.|++|||..
T Consensus 47 ~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---- 121 (260)
T cd05070 47 SFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM---- 121 (260)
T ss_pred HHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4678999999999999999998875 45678999999999999999753 34589999999999999999999954
Q ss_pred CeeecCCCCccc--------------------c------cccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSVT--------------------Q------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------~------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+++... . ....++..|+|||+.....++.++||||||+++|||++ |+
T Consensus 122 ~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~ 201 (260)
T cd05070 122 NYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 201 (260)
T ss_pred CcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCC
Confidence 799999985410 0 01123457999999888889999999999999999999 88
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
.||.... .....+......+. +.+.+.+..+.+++.+|+..+|++|||+.++.+.|++
T Consensus 202 ~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 259 (260)
T cd05070 202 VPYPGMN--NREVLEQVERGYRM-----------------PCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED 259 (260)
T ss_pred CCCCCCC--HHHHHHHHHcCCCC-----------------CCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 8986532 11222222211110 0122334568899999999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-23 Score=210.33 Aligned_cols=198 Identities=16% Similarity=0.173 Sum_probs=140.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|+|++++++++......++||||++ |+|.+++...+..+++.....++.|++.||+|||. .+
T Consensus 49 ~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~----~~ 123 (288)
T cd07871 49 TAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLD-SDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHK----RK 123 (288)
T ss_pred hHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCC-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 34578999999999999999999988888899999998 59999997666668888999999999999999994 48
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|||+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+||+.|
T Consensus 124 ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~p 203 (288)
T cd07871 124 ILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPM 203 (288)
T ss_pred cccCCCCHHHEEECCCCCEEECcCcceeeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCC
Confidence 9999998431 0112347889999998865 5589999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHh---CCCCccc---------cccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVKES---LPHRLSE---------VVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|....... .+....+.. .++.+.. ...+..... +..........++.+++.+|++.||.+|||++|
T Consensus 204 f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~ 281 (288)
T cd07871 204 FPGSTVKE-ELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQ-PLINHAPRLDTDGIDLLSSLLLYETKSRISAEA 281 (288)
T ss_pred CCCCCHHH-HHHHHHHHhCCCChHHhhccccchhhhccccCccCCC-chHHhCCCCCHHHHHHHHHhcCcCcccCCCHHH
Confidence 86532111 111111100 0000111 111110000 000001123456789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 282 ~l~ 284 (288)
T cd07871 282 ALR 284 (288)
T ss_pred Hhc
Confidence 974
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=209.24 Aligned_cols=189 Identities=17% Similarity=0.297 Sum_probs=145.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|...+..+.|+|++++++.|... ..++++||+++|+|.+++++....+++.....++.|+++|++|||. .+
T Consensus 55 ~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~----~~ 129 (279)
T cd05109 55 EILDEAYVMAGVGSPYVCRLLGICLTS-TVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEE----VR 129 (279)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEcCC-CcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 456788888899999999999988754 4679999999999999998755678999999999999999999994 47
Q ss_pred eeecCCCCccc----------------------c-----cccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 528 IIHCEGEDSVT----------------------Q-----TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 528 i~h~d~~~~~~----------------------~-----~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
++|+|+|+... . ....++..|+|||...+..++.++|||||||++|||+| |.
T Consensus 130 iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~ 209 (279)
T cd05109 130 LVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGA 209 (279)
T ss_pred eeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCC
Confidence 99999985410 0 00113567999999988889999999999999999999 88
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... ...+..++...... +.+...+..+.+++.+||+.||++||++.|++..++++..
T Consensus 210 ~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~ 270 (279)
T cd05109 210 KPYDGIP--AREIPDLLEKGERL-----------------PQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMAR 270 (279)
T ss_pred CCCCCCC--HHHHHHHHHCCCcC-----------------CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 8986532 12233333221110 0012234567899999999999999999999999988765
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
+
T Consensus 271 ~ 271 (279)
T cd05109 271 D 271 (279)
T ss_pred C
Confidence 4
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=214.30 Aligned_cols=190 Identities=21% Similarity=0.350 Sum_probs=146.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++.|... ..++++||+++|+|.+++......+++.....++.|+++|++|||. .+
T Consensus 55 ~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~----~~ 129 (303)
T cd05110 55 EFMDEALIMASMDHPHLVRLLGVCLSP-TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEE----RR 129 (303)
T ss_pred HHHHHHHHHHhCCCCCcccEEEEEcCC-CceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhh----cC
Confidence 456788899999999999999988754 4578999999999999998766678999999999999999999994 47
Q ss_pred eeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 528 IIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 528 i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
++|+|+++... .....++..|+|||+..+..++.++|||||||++||+++ |+
T Consensus 130 ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~ 209 (303)
T cd05110 130 LVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGG 209 (303)
T ss_pred eeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCC
Confidence 99999985310 001124568999999988889999999999999999998 88
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... .....+++...... +.+..+..++.+++.+||..+|++||+|+++++.++++..
T Consensus 210 ~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~ 270 (303)
T cd05110 210 KPYDGIP--TREIPDLLEKGERL-----------------PQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMAR 270 (303)
T ss_pred CCCCCCC--HHHHHHHHHCCCCC-----------------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 9986532 12223333211100 0011223467899999999999999999999999998764
Q ss_pred Hh
Q 040540 660 KF 661 (669)
Q Consensus 660 ~~ 661 (669)
..
T Consensus 271 ~~ 272 (303)
T cd05110 271 DP 272 (303)
T ss_pred ch
Confidence 43
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-23 Score=210.76 Aligned_cols=194 Identities=20% Similarity=0.343 Sum_probs=143.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC----------CccCHHHHHHHHHhHHhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----------YFLDILERLNIMIDVGSAL 516 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----------~~l~~~~~~~i~~~i~~~l 516 (669)
..+..|+..++.++|+|++++++++......+++|||+++|+|.+++.... ..+++.+...++.++++|+
T Consensus 64 ~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al 143 (296)
T cd05095 64 NDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGM 143 (296)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999998889999999999999999997532 2367788999999999999
Q ss_pred hhhhcCCCCCCeeecCCCCccc---------------c------------cccccccccCccccccCCCcCccccchhhH
Q 040540 517 EYLRHGHSSAPIIHCEGEDSVT---------------Q------------TTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569 (669)
Q Consensus 517 ~~lh~~~~~~~i~h~d~~~~~~---------------~------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G 569 (669)
+|||. .+++|+|+|+... . ....++..|+|||....+.++.++||||||
T Consensus 144 ~~lH~----~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG 219 (296)
T cd05095 144 KYLSS----LNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFG 219 (296)
T ss_pred HHHHH----CCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHH
Confidence 99995 4799999985410 0 001124679999988888899999999999
Q ss_pred HHHHHHHh--CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 570 VLLMETFT--RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 570 vil~el~t--g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|++|||+| |..||...... .....+.............+ .+..++..+.+++.+||+.||++||+|
T Consensus 220 ~~l~el~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~li~~cl~~~p~~Rp~~ 287 (296)
T cd05095 220 VTLWEILTLCKEQPYSQLSDE--QVIENTGEFFRDQGRQVYLP----------KPALCPDSLYKLMLSCWRRNAKERPSF 287 (296)
T ss_pred HHHHHHHHhCCCCCccccChH--HHHHHHHHHHhhccccccCC----------CCCCCCHHHHHHHHHHcCCCcccCCCH
Confidence 99999998 67787643211 11111111110000000000 112234567899999999999999999
Q ss_pred HHHHHHHHH
Q 040540 648 TDAAAKLKK 656 (669)
Q Consensus 648 ~~v~~~l~~ 656 (669)
.||.+.|++
T Consensus 288 ~~i~~~l~~ 296 (296)
T cd05095 288 QEIHATLLE 296 (296)
T ss_pred HHHHHHHhC
Confidence 999998863
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-23 Score=207.72 Aligned_cols=185 Identities=24% Similarity=0.316 Sum_probs=140.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCcc--CHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL--DILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l--~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|+|++++++++......++++||+++++|.++++.....+ ++.....++.|+++|++|||.
T Consensus 50 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~--- 126 (268)
T cd06624 50 QPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHD--- 126 (268)
T ss_pred HHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHH---
Confidence 356678999999999999999999999899999999999999999998644445 778888899999999999994
Q ss_pred CCCeeecCCCCccc--------------------------ccccccccccCccccccCC--CcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEG--IVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+++... .....|+..|+|||+.... .++.++|||||||++|||+
T Consensus 127 -~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~ 205 (268)
T cd06624 127 -NQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMA 205 (268)
T ss_pred -CCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHH
Confidence 4899999884310 0112378899999998654 3789999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||....... ...+...... ..+.+ +......+.+++.+||+.+|++|||+.|++.
T Consensus 206 ~g~~p~~~~~~~~--~~~~~~~~~~------~~~~~---------~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 264 (268)
T cd06624 206 TGKPPFIELGEPQ--AAMFKVGMFK------IHPEI---------PESLSAEAKNFILRCFEPDPDKRASAHDLLQ 264 (268)
T ss_pred hCCCCCccccChh--hhHhhhhhhc------cCCCC---------CcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence 9999986532111 1111100000 00111 1233456789999999999999999999875
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=206.62 Aligned_cols=182 Identities=19% Similarity=0.278 Sum_probs=151.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.+|.-++|||||++|.........|+|.|.-++|+|++||.++...+.+.-..+++.||.+|+.|+|+-
T Consensus 62 ~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqL---- 137 (864)
T KOG4717|consen 62 GHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQL---- 137 (864)
T ss_pred hHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhh----
Confidence 3456799999999999999999999888889999999999999999998877788888999999999999999976
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcC-ccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVS-AKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gvil~el~tg~~ 580 (669)
-++|||+|+. ...++.+|+..|.|||++.+..|+ +++||||+|||||-++.|+.
T Consensus 138 HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~ 217 (864)
T KOG4717|consen 138 HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQP 217 (864)
T ss_pred hhhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCC
Confidence 4899999964 234556799999999999987776 57999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||......+ .+..++|=. +.-+.....++.++|..|+.+||.+|-+.+||+.
T Consensus 218 PFqeANDSE-------------TLTmImDCK-------YtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s 269 (864)
T KOG4717|consen 218 PFQEANDSE-------------TLTMIMDCK-------YTVPSHVSKECRDLIQSMLVRDPKKRASLEEIVS 269 (864)
T ss_pred ccccccchh-------------hhhhhhccc-------ccCchhhhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence 997643211 112222211 1125567788999999999999999999999975
|
|
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=208.54 Aligned_cols=186 Identities=22% Similarity=0.323 Sum_probs=144.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+++++|+|++++++.+.. ...+++|||+++|+|.+++.+.. ..+++.....++.++++|++|||.
T Consensus 41 ~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---- 115 (257)
T cd05040 41 DDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLES---- 115 (257)
T ss_pred HHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHh----
Confidence 456789999999999999999998877 77899999999999999998654 468999999999999999999994
Q ss_pred CCeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+++... .....++..|+|||+.....++.++|||||||++|||+|
T Consensus 116 ~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t 195 (257)
T cd05040 116 KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFT 195 (257)
T ss_pred CCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHh
Confidence 4799999985410 001235678999999988889999999999999999999
Q ss_pred -CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 578 -RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 578 -g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
|+.||...... .+....... .... +.+...+..+.+++.+|++.+|++||++.|+++.|.
T Consensus 196 ~g~~p~~~~~~~--~~~~~~~~~-~~~~---------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 196 YGEEPWAGLSGS--QILKKIDKE-GERL---------------ERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred CCCCCCCCCCHH--HHHHHHHhc-CCcC---------------CCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 99998653211 111111110 0000 001123456789999999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=209.72 Aligned_cols=187 Identities=19% Similarity=0.376 Sum_probs=143.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC---------------CCccCHHHHHHHHHh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---------------NYFLDILERLNIMID 511 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---------------~~~l~~~~~~~i~~~ 511 (669)
..+..|...+..++|+|++++++.+......++++||+++++|.+++..+ ...+++.....++.|
T Consensus 53 ~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 132 (283)
T cd05091 53 EEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQ 132 (283)
T ss_pred HHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHH
Confidence 34667888899999999999999999888899999999999999998531 234788888999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
+++|++|+|. .+++|+|+|+... .....+++.|+|||.+....++.++|
T Consensus 133 l~~aL~~lH~----~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D 208 (283)
T cd05091 133 IAAGMEFLSS----HHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSD 208 (283)
T ss_pred HHHHHHHHHH----cCccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchh
Confidence 9999999994 4799999985410 00112467899999998888999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||++|||+| |..||..... ....+.+...... +.+.+++..+.+++.+||+.+|++
T Consensus 209 v~slG~~l~el~~~g~~p~~~~~~--~~~~~~i~~~~~~-----------------~~~~~~~~~~~~li~~cl~~~p~~ 269 (283)
T cd05091 209 IWSYGVVLWEVFSYGLQPYCGYSN--QDVIEMIRNRQVL-----------------PCPDDCPAWVYTLMLECWNEFPSR 269 (283)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHcCCcC-----------------CCCCCCCHHHHHHHHHHhCCCccc
Confidence 9999999999998 7888765321 1122221111000 012234456789999999999999
Q ss_pred CCCHHHHHHHHHH
Q 040540 644 RMHMTDAAAKLKK 656 (669)
Q Consensus 644 Rps~~~v~~~l~~ 656 (669)
||++.+|++.|+.
T Consensus 270 RP~~~~i~~~l~~ 282 (283)
T cd05091 270 RPRFKDIHSRLRT 282 (283)
T ss_pred CCCHHHHHHHhhC
Confidence 9999999998864
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-23 Score=208.99 Aligned_cols=185 Identities=20% Similarity=0.221 Sum_probs=141.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.+++.++|+|++++++.+..++..++||||+++|+|.+++... ...+++.....++.|+++|+.|||. .
T Consensus 46 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~----~ 121 (285)
T cd05605 46 MALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHR----E 121 (285)
T ss_pred HHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3556889999999999999999998888999999999999999988653 3468999999999999999999995 4
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+++|+|+++.. ......|+..|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 122 ~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf 201 (285)
T cd05605 122 RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPF 201 (285)
T ss_pred CcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCC
Confidence 79999998430 011235789999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
...... . ....+...+..... ..+...+..+.+++.+||..||++|| +++++++
T Consensus 202 ~~~~~~-~-~~~~~~~~~~~~~~--------------~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~ 260 (285)
T cd05605 202 RQRKEK-V-KREEVERRVKEDQE--------------EYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA 260 (285)
T ss_pred CCCchh-h-HHHHHHHHhhhccc--------------ccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence 753211 1 11111111110000 00122345678999999999999999 7778755
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=215.08 Aligned_cols=180 Identities=21% Similarity=0.219 Sum_probs=139.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.+++.++|||++++++.+...+..++||||+++|+|.+++... ..+.+.....++.|+++|++|||. .+
T Consensus 46 ~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~~ 120 (323)
T cd05584 46 HTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLERE-GIFMEDTACFYLSEISLALEHLHQ----QG 120 (323)
T ss_pred HHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 3456889999999999999999998888999999999999999999754 456777888899999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 121 ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf 200 (323)
T cd05584 121 IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPF 200 (323)
T ss_pred eecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCC
Confidence 9999998430 011224899999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
..... ............ .+ +......+.+++.+|++.+|++|| ++.++++
T Consensus 201 ~~~~~-----~~~~~~~~~~~~--~~-------------~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~ 255 (323)
T cd05584 201 TAENR-----KKTIDKILKGKL--NL-------------PPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS 255 (323)
T ss_pred CCCCH-----HHHHHHHHcCCC--CC-------------CCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence 65321 111111111100 00 112234578999999999999999 6777654
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=211.60 Aligned_cols=185 Identities=21% Similarity=0.273 Sum_probs=141.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++.+......++||||+++++|..++.+....+++..+..++.++++|+.|||. .
T Consensus 47 ~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~----~ 122 (282)
T cd06643 47 EDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHE----N 122 (282)
T ss_pred HHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 356678889999999999999999988888999999999999999887655678999999999999999999995 4
Q ss_pred CeeecCCCCccc-------------------------ccccccccccCcccccc-----CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSVT-------------------------QTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~~-------------------------~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++... .....|+..|+|||++. ...++.++|||||||++|||+
T Consensus 123 ~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~ 202 (282)
T cd06643 123 KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA 202 (282)
T ss_pred CeeecCCCcccEEEccCCCEEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHc
Confidence 799999985410 11124788999999874 344778999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||....... .+....... +. .+. .+......+.+++.+||+.+|++||++.++++
T Consensus 203 ~g~~p~~~~~~~~-~~~~~~~~~-~~--------~~~-------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 261 (282)
T cd06643 203 QIEPPHHELNPMR-VLLKIAKSE-PP--------TLA-------QPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQ 261 (282)
T ss_pred cCCCCccccCHHH-HHHHHhhcC-CC--------CCC-------CccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9999986532111 111111110 00 000 01223456789999999999999999999875
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=213.27 Aligned_cols=187 Identities=23% Similarity=0.411 Sum_probs=142.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---------------------CccCHHHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------------YFLDILER 505 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------------~~l~~~~~ 505 (669)
+.+..|+..+..+.|+|+++++++|......+++|||+++|+|.++++... ..+++.++
T Consensus 53 ~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (288)
T cd05050 53 ADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQ 132 (288)
T ss_pred HHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHH
Confidence 356678999999999999999999998888999999999999999997421 24678888
Q ss_pred HHHHHhHHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCC
Q 040540 506 LNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGI 558 (669)
Q Consensus 506 ~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~ 558 (669)
..++.+++.|++|+|. .+++|+|+++... .....++..|+|||...+..
T Consensus 133 ~~~~~~i~~aL~~lH~----~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~ 208 (288)
T cd05050 133 LCIAKQVAAGMAYLSE----RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNR 208 (288)
T ss_pred HHHHHHHHHHHHHHHh----CCeecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCC
Confidence 9999999999999994 4799999884310 00112345699999998888
Q ss_pred cCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcc
Q 040540 559 VSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCC 637 (669)
Q Consensus 559 ~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~ 637 (669)
++.++|||||||++|||++ |..||...... .....+.. ... . +.+...+..+.+++.+||
T Consensus 209 ~~~~~Dv~slG~il~el~~~~~~p~~~~~~~--~~~~~~~~---~~~--------~------~~~~~~~~~l~~li~~~l 269 (288)
T cd05050 209 YTTESDVWAYGVVLWEIFSYGMQPYYGMAHE--EVIYYVRD---GNV--------L------SCPDNCPLELYNLMRLCW 269 (288)
T ss_pred CCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhc---CCC--------C------CCCCCCCHHHHHHHHHHc
Confidence 9999999999999999998 88887643211 11111111 100 0 001123456789999999
Q ss_pred cCCCCCCCCHHHHHHHHHH
Q 040540 638 MESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 638 ~~~P~~Rps~~~v~~~l~~ 656 (669)
+.+|++|||+.|+++.|++
T Consensus 270 ~~~p~~Rpt~~el~~~l~~ 288 (288)
T cd05050 270 SKLPSDRPSFASINRILQR 288 (288)
T ss_pred ccCcccCCCHHHHHHHhhC
Confidence 9999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-23 Score=206.67 Aligned_cols=188 Identities=23% Similarity=0.410 Sum_probs=143.1
Q ss_pred ccCchhhhhhccccccccceeccccccccc------cceeeccCCCCChHHhhhcC-----CCccCHHHHHHHHHhHHhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDF------KALVLEFMPNGSLEKWLYSH-----NYFLDILERLNIMIDVGSA 515 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~------~~lv~ey~~~g~L~~~l~~~-----~~~l~~~~~~~i~~~i~~~ 515 (669)
..+..|+..++.++|+|++++++.+..... .++++||+++|+|.+++... ...+++.....++.|++.|
T Consensus 46 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~a 125 (273)
T cd05035 46 EEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG 125 (273)
T ss_pred HHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHH
Confidence 356778899999999999999998765443 68999999999999998542 2358888999999999999
Q ss_pred hhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhh
Q 040540 516 LEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 516 l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
++|+|. .+++|+|+|+... .....++..|+|||+.....++.++|||||
T Consensus 126 L~~lH~----~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~Sl 201 (273)
T cd05035 126 MEYLSN----RNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAF 201 (273)
T ss_pred HHHHHh----CCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHH
Confidence 999995 4799999995310 000123567999999988889999999999
Q ss_pred HHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 569 GVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 569 Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||++|||++ |..||.... .....+++....... .+..++..+.+++.+||+.||++||++
T Consensus 202 G~il~el~~~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~~l~~~p~~Rp~~ 262 (273)
T cd05035 202 GVTMWEIATRGQTPYPGVE--NHEIYDYLRHGNRLK-----------------QPEDCLDELYDLMYSCWRADPKDRPTF 262 (273)
T ss_pred HHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCCCC-----------------CCcCCCHHHHHHHHHHcCCChhhCcCH
Confidence 999999999 888886532 112223322211110 012334568899999999999999999
Q ss_pred HHHHHHHHHh
Q 040540 648 TDAAAKLKKI 657 (669)
Q Consensus 648 ~~v~~~l~~~ 657 (669)
.|+++.|+++
T Consensus 263 ~e~~~~l~~~ 272 (273)
T cd05035 263 TKLREVLENI 272 (273)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=205.08 Aligned_cols=182 Identities=22% Similarity=0.393 Sum_probs=140.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.+++.++|+|+++++++|.. ...++||||+++|+|.++++.....+++..+..++.|++.|++|||. .
T Consensus 46 ~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~----~ 120 (259)
T cd05037 46 LAFFETASLMSQLSHKHLVKLYGVCVR-DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLED----K 120 (259)
T ss_pred HHHHHHHHHHHcCCCcchhheeeEEec-CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhh----C
Confidence 456678889999999999999999887 67789999999999999998755578999999999999999999994 4
Q ss_pred CeeecCCCCcccc----------------------------cccccccccCccccccCC--CcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSVTQ----------------------------TTTMATIGYMAPEYGSEG--IVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~~~----------------------------~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.... ....++..|+|||++... .++.++|||||||++||++
T Consensus 121 ~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~ 200 (259)
T cd05037 121 KLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEIC 200 (259)
T ss_pred CeecccCccceEEEecCccccCCceeEEeCCCCcccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHH
Confidence 7999999854210 011356789999998776 6899999999999999999
Q ss_pred h-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 577 T-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 577 t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
+ |..|+...... ....+... ... .. ......+.+++.+||..+|++||++.||++.|
T Consensus 201 ~~~~~p~~~~~~~--~~~~~~~~--~~~--------~~---------~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l 258 (259)
T cd05037 201 SNGEEPLSTLSSS--EKERFYQD--QHR--------LP---------MPDCAELANLINQCWTYDPTKRPSFRAILRDL 258 (259)
T ss_pred hCCCCCcccCCch--hHHHHHhc--CCC--------CC---------CCCchHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 9 57777553211 11111110 000 00 00015678999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-23 Score=205.81 Aligned_cols=188 Identities=25% Similarity=0.404 Sum_probs=146.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..++|+|++++++.+......++||||+++++|.++++... ..+++.....++.+++.|+.|||.
T Consensus 45 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~---- 120 (256)
T cd05039 45 QAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEE---- 120 (256)
T ss_pred HHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 456778999999999999999999988888999999999999999997543 268999999999999999999994
Q ss_pred CCeeecCCCCccc----------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCC
Q 040540 526 APIIHCEGEDSVT----------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPT 582 (669)
Q Consensus 526 ~~i~h~d~~~~~~----------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~ 582 (669)
.+++|+|+++... .....++..|+|||+.....++.++||||||+++||+++ |+.||
T Consensus 121 ~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~ 200 (256)
T cd05039 121 KNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY 200 (256)
T ss_pred CCccchhcccceEEEeCCCCEEEcccccccccccccccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCC
Confidence 4799999995410 001123557999999988889999999999999999997 99998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
.... ...+...+....... .+...+..+.+++.+|+..+|++||+++|++++|+.+
T Consensus 201 ~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~ 256 (256)
T cd05039 201 PRIP--LKDVVPHVEKGYRME-----------------APEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI 256 (256)
T ss_pred CCCC--HHHHHHHHhcCCCCC-----------------CccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence 6532 111222222111100 0112345678999999999999999999999999753
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-25 Score=238.73 Aligned_cols=362 Identities=28% Similarity=0.353 Sum_probs=231.4
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
.++.|++..|.+....-+....--.|++||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+.+++.+|++|+|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 3777888888765322222333334999999999886 78888999999999999999987 678899999999999999
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEE-------------------EcccCCCcccCCcccc
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNL-------------------GLWSCNLQGQIPTEIG 192 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L-------------------~l~~n~l~~~~p~~~~ 192 (669)
+|.+. ..|..+..+++|+.|++++|.+. .+|..+..++.+..+ ++..|.+.+.++..+.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~ 177 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY 177 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh
Confidence 99887 79999999999999999999886 566655555444444 4444455555555555
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCC--------------------cEEEcccCCCccccchhhhccCCCCCeeecc
Q 040540 193 SLQNLKNLDLADNKLSGLIPPTIFNISTM--------------------RILTLESNQLSGRLPSTIGHSLRNIEYLALS 252 (669)
Q Consensus 193 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L--------------------~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls 252 (669)
.+++ .|||++|.+.. ..+.++.+| +.|..++|.++...+.. .-.+|++++++
T Consensus 178 ~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis 249 (1081)
T KOG0618|consen 178 NLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDIS 249 (1081)
T ss_pred hhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc---ccccceeeecc
Confidence 5444 56677666651 112222233 33333333333111110 12356666666
Q ss_pred cCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECc
Q 040540 253 TNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALA 332 (669)
Q Consensus 253 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 332 (669)
+|++++ +|+++..+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+...+ .....++.|++|++.
T Consensus 250 ~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip---------~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 250 HNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP---------PFLEGLKSLRTLDLQ 318 (1081)
T ss_pred hhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC---------Ccccccceeeeeeeh
Confidence 666653 3466666666666666666663 45555555666666666666555442 223457889999999
Q ss_pred CCCCccccchhHhhhhc---------------------cccccceEeecCcccCCCCCccccccCCCcEEecCCCccccc
Q 040540 333 SNPLGGILPQLIGNFSA---------------------SLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY 391 (669)
Q Consensus 333 ~n~l~~~~~~~~~~~~~---------------------~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~ 391 (669)
.|.+....+..+..... ....|..|.+.+|.++...-..+.....|+.|++++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 99988654432221100 112234455566666655555566666777777777776644
Q ss_pred CchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcce
Q 040540 392 VPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLS 437 (669)
Q Consensus 392 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 437 (669)
....+..+..|++|++|+|++. .+|..+..+..|+.|...+|++.
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 4445666777777777777776 45667777777777777777766
|
|
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-23 Score=208.40 Aligned_cols=186 Identities=20% Similarity=0.374 Sum_probs=143.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---------CccCHHHHHHHHHhHHhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------~~l~~~~~~~i~~~i~~~l~~ 518 (669)
.+..|+..+..+.|+|++++++++......++||||+++|+|.+++.... ..+++.....++.+++.|+.|
T Consensus 55 ~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 134 (277)
T cd05032 55 EFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAY 134 (277)
T ss_pred HHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999998899999999999999999996421 236788899999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
||. .+++|+|+++.. ......++..|+|||......++.++|||||||+
T Consensus 135 lH~----~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i 210 (277)
T cd05032 135 LAA----KKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVV 210 (277)
T ss_pred HHh----CCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHH
Confidence 994 479999988431 0011235678999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+||++| |+.||.... ...+..+....... . .+...+..+.+++.+||+.+|++|||+.++
T Consensus 211 l~el~t~g~~p~~~~~--~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l 271 (277)
T cd05032 211 LWEMATLAEQPYQGLS--NEEVLKFVIDGGHL--------D---------LPENCPDKLLELMRMCWQYNPKMRPTFLEI 271 (277)
T ss_pred HHHhhccCCCCCccCC--HHHHHHHHhcCCCC--------C---------CCCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 999999 898986432 11222222211000 0 011224567899999999999999999999
Q ss_pred HHHHHH
Q 040540 651 AAKLKK 656 (669)
Q Consensus 651 ~~~l~~ 656 (669)
++.|++
T Consensus 272 ~~~l~~ 277 (277)
T cd05032 272 VSSLKD 277 (277)
T ss_pred HHHhcC
Confidence 998863
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=232.24 Aligned_cols=333 Identities=21% Similarity=0.231 Sum_probs=263.3
Q ss_pred CCEEEEEcCCC------CCcccccccccCCC-CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCc
Q 040540 51 QRVTALNLSDM------GLGGTIPLHFGNLS-FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLS 123 (669)
Q Consensus 51 ~~v~~L~ls~~------~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 123 (669)
.+++.|.+..+ .+...+|..|..++ .|+.|++.+|.+. .+|..| ...+|+.|++++|++. .+|..+..++
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCC
Confidence 35666766543 23345677777764 5999999999886 677777 5789999999999987 6788889999
Q ss_pred ccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEcc
Q 040540 124 KLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLA 203 (669)
Q Consensus 124 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 203 (669)
+|++|+|+++...+.+| .++.+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 99999999887656677 48899999999999998888999999999999999999988777888766 78999999999
Q ss_pred CCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcc-------cccCCccccCCCCCCEEeCC
Q 040540 204 DNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL-------IGKIPNSITNATKLIGLDLG 276 (669)
Q Consensus 204 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l-------~~~~p~~~~~l~~L~~L~ls 276 (669)
+|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|.+|++.++.. ....+..+...++|+.|+++
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 99876666653 468899999999986 678765 478888888876432 11122223345689999999
Q ss_pred CCCccccCccccCCCCCCCEEEccCCc-cccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccc
Q 040540 277 FNSFSGHIPNTFGNLRHLSVLNVMMNN-LTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIY 355 (669)
Q Consensus 277 ~n~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~ 355 (669)
+|...+.+|..++++++|+.|++++|. +...+ ....+++|+.|++++|.....+|.. ..++.
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP----------~~~~L~sL~~L~Ls~c~~L~~~p~~-------~~nL~ 849 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLP----------TGINLESLESLDLSGCSRLRTFPDI-------STNIS 849 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeC----------CCCCccccCEEECCCCCcccccccc-------ccccC
Confidence 998888899999999999999998764 43332 1225789999999998765544432 35688
Q ss_pred eEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCcc
Q 040540 356 AFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKL 412 (669)
Q Consensus 356 ~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l 412 (669)
.|++++|.+. .+|.++..+++|+.|++.+++-...+|.....+++|+.+++++|.-
T Consensus 850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 8999999987 5788899999999999998554445777788899999999999853
|
syringae 6; Provisional |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-23 Score=205.66 Aligned_cols=186 Identities=26% Similarity=0.488 Sum_probs=147.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC--------CCccCHHHHHHHHHhHHhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH--------NYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~--------~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
+.+..|+..+..++|++++++++++......+++|||+++++|.+++... ...+++.....++.++++|++|
T Consensus 41 ~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~ 120 (262)
T cd00192 41 KDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEY 120 (262)
T ss_pred HHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999888999999999999999999865 4678999999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
||. .+++|+|+++.. ......++..|+|||......++.++||||+||+
T Consensus 121 lH~----~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i 196 (262)
T cd00192 121 LAS----KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVL 196 (262)
T ss_pred HHc----CCcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHH
Confidence 995 579999998531 0112246788999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+|||++ |+.||.... ...+.+.+..... ...+...+.++.+++.+||..+|++||++.|+
T Consensus 197 l~~l~~~g~~p~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l 257 (262)
T cd00192 197 LWEIFTLGATPYPGLS--NEEVLEYLRKGYR-----------------LPKPEYCPDELYELMLSCWQLDPEDRPTFSEL 257 (262)
T ss_pred HHHHHhcCCCCCCCCC--HHHHHHHHHcCCC-----------------CCCCccCChHHHHHHHHHccCCcccCcCHHHH
Confidence 999999 599987642 2222222221100 01122334568899999999999999999999
Q ss_pred HHHHH
Q 040540 651 AAKLK 655 (669)
Q Consensus 651 ~~~l~ 655 (669)
++.|+
T Consensus 258 ~~~l~ 262 (262)
T cd00192 258 VERLE 262 (262)
T ss_pred HHhhC
Confidence 98763
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-24 Score=217.41 Aligned_cols=186 Identities=20% Similarity=0.321 Sum_probs=147.2
Q ss_pred ccccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 445 ~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
...+|.+|...|.+++|+|++++||.... .-..+|+|.+++|+|.+-|++ ....+-......++.|||+|+.||.
T Consensus 154 ~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLe--- 229 (1039)
T KOG0199|consen 154 IMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLE--- 229 (1039)
T ss_pred hHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHh---
Confidence 34589999999999999999999999876 666799999999999999997 4456777788899999999999995
Q ss_pred CCCCeeecCCCCcc------------------------cccc----cccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 524 SSAPIIHCEGEDSV------------------------TQTT----TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 524 ~~~~i~h~d~~~~~------------------------~~~~----~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.++.||||+..-. .... ..--..|+|||.+..++++.++|||+|||++|||
T Consensus 230 -skrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEM 308 (1039)
T KOG0199|consen 230 -SKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEM 308 (1039)
T ss_pred -hhhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhh
Confidence 5689999976210 0000 0013579999999999999999999999999999
Q ss_pred Hh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 576 FT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 576 ~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
+| |..||-+... ..+.+ .+| ++.+.+.+..|+.++++++.+||..+|++|||+.++.+.+
T Consensus 309 FtyGEePW~G~~g--~qIL~------------~iD-----~~erLpRPk~csedIY~imk~cWah~paDRptFsair~~~ 369 (1039)
T KOG0199|consen 309 FTYGEEPWVGCRG--IQILK------------NID-----AGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDL 369 (1039)
T ss_pred hccCCCCCCCCCH--HHHHH------------hcc-----ccccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence 99 6788865321 11111 111 2344556788999999999999999999999999997543
|
|
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-23 Score=210.14 Aligned_cols=199 Identities=19% Similarity=0.204 Sum_probs=143.6
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++.+..++..+++|||+++++|.++++.. ..+++.....++.++++|+.|||.. .+
T Consensus 45 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~~ 120 (308)
T cd06615 45 QIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPENILGKISIAVLRGLTYLREK---HK 120 (308)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhh---CC
Confidence 4567899999999999999999999999999999999999999999754 4578888999999999999999942 47
Q ss_pred eeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 528 IIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
++|+|+++.. ......|+..|+|||...+..++.++|||||||++|||+||+.||..
T Consensus 121 i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~ 200 (308)
T cd06615 121 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPP 200 (308)
T ss_pred EEECCCChHHEEEecCCcEEEccCCCcccccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence 9999998431 01123478899999998887899999999999999999999999864
Q ss_pred CCCCCccHHHHHHHhCCCCc---------------------cccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 585 MFTGEMSLRRWVKESLPHRL---------------------SEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
.. ......+......... .+..+.......+..+ .......+.+++.+||..+|++
T Consensus 201 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~ 277 (308)
T cd06615 201 PD--AKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLP-SGAFSDEFQDFVDKCLKKNPKE 277 (308)
T ss_pred cc--hhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCc-CcccCHHHHHHHHHHccCChhh
Confidence 22 1111111111000000 0000000000000000 0123456889999999999999
Q ss_pred CCCHHHHHHH
Q 040540 644 RMHMTDAAAK 653 (669)
Q Consensus 644 Rps~~~v~~~ 653 (669)
||++++|++.
T Consensus 278 Rpt~~~ll~~ 287 (308)
T cd06615 278 RADLKELTKH 287 (308)
T ss_pred CcCHHHHhcC
Confidence 9999999875
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-23 Score=205.81 Aligned_cols=186 Identities=24% Similarity=0.401 Sum_probs=141.6
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..+..++|+|++++++.+. ....++||||+++|+|.+++++. +..+++..+..++.++++|++|+|. .
T Consensus 47 ~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~----~ 121 (262)
T cd05071 47 AFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVER----M 121 (262)
T ss_pred HHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 4677899999999999999998764 45578999999999999999753 3457899999999999999999995 4
Q ss_pred CeeecCCCCccc----------------------c----cccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSVT----------------------Q----TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------~----~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+++... . ....++..|+|||+..+..++.++|||||||++|||+| |+
T Consensus 122 ~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~ 201 (262)
T cd05071 122 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 201 (262)
T ss_pred CccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCC
Confidence 799999885310 0 01124567999999988889999999999999999999 78
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
.||...... .+..-.....+ .+...+.+..+.+++.+|++.+|++||++.++.+.|++.
T Consensus 202 ~p~~~~~~~--~~~~~~~~~~~-----------------~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~ 260 (262)
T cd05071 202 VPYPGMVNR--EVLDQVERGYR-----------------MPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 260 (262)
T ss_pred CCCCCCChH--HHHHHHhcCCC-----------------CCCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence 888653211 11111000000 001223445678999999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-23 Score=215.82 Aligned_cols=189 Identities=16% Similarity=0.171 Sum_probs=143.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|+|++++++.+......++||||+++|+|.+++... ..+++.....++.+++.|+.|||. .+
T Consensus 47 ~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~----~~ 121 (333)
T cd05600 47 HVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNL-GVLSEDHARFYMAEMFEAVDALHE----LG 121 (333)
T ss_pred HHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567888999999999999999999999999999999999999999753 457888889999999999999995 47
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 122 ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~ 201 (333)
T cd05600 122 YIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGS 201 (333)
T ss_pred ccccCCCHHHEEECCCCCEEEEeCcCCcccccccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCC
Confidence 9999998431 112235899999999998889999999999999999999999999753
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
... .....+... ..... .+.... ........+.+++.+|+..+|++||++.++++.
T Consensus 202 ~~~--~~~~~i~~~-~~~~~---~~~~~~------~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h 257 (333)
T cd05600 202 TPN--ETWENLKYW-KETLQ---RPVYDD------PRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH 257 (333)
T ss_pred CHH--HHHHHHHhc-ccccc---CCCCCc------cccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence 211 111111110 00000 000000 001234567899999999999999999999863
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-23 Score=210.35 Aligned_cols=199 Identities=17% Similarity=0.194 Sum_probs=139.1
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+..|+.+++.++|+|++++++++..+...++||||++ +++.+++......++......++.|+++|++|||. .+|
T Consensus 50 ~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~----~~i 124 (303)
T cd07869 50 AIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQ----RYI 124 (303)
T ss_pred HHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH----CCe
Confidence 4568899999999999999999988889999999996 68888887655668888899999999999999994 479
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|||+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+||+.||
T Consensus 125 vH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf 204 (303)
T cd07869 125 LHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAF 204 (303)
T ss_pred ecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 999999430 0112347889999998765 45889999999999999999999999
Q ss_pred CcCCCCCccHHHHHHH-hCCC--Ccccc-----cccc-cc--c-hh-hhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 583 DEMFTGEMSLRRWVKE-SLPH--RLSEV-----VDTN-LV--R-EE-QAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~-~~~~--~~~~~-----~~~~-~~--~-~~-~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
.........+...... ..+. .+... ..+. .. . .. ............+.+++.+|++.||++|||+.|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~ 284 (303)
T cd07869 205 PGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQA 284 (303)
T ss_pred CCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHH
Confidence 7532211111111100 0000 00000 0000 00 0 00 000000112346789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 285 ~l~ 287 (303)
T cd07869 285 ALS 287 (303)
T ss_pred Hhc
Confidence 976
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-23 Score=204.49 Aligned_cols=185 Identities=24% Similarity=0.383 Sum_probs=143.6
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.+.|++++++++++......+++|||+++++|.++++.....+++.....++.+++.|++|||. .+
T Consensus 45 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~----~~ 120 (256)
T cd05112 45 DFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLES----SN 120 (256)
T ss_pred HHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 46679999999999999999999988888999999999999999998655668899999999999999999995 47
Q ss_pred eeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCC
Q 040540 528 IIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKR 580 (669)
Q Consensus 528 i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~ 580 (669)
++|+|+++... .....++.+|+|||...+..++.++|||||||++|||++ |+.
T Consensus 121 i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~ 200 (256)
T cd05112 121 VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKT 200 (256)
T ss_pred ccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCC
Confidence 99999985410 001123468999999988889999999999999999998 899
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
||..... ..+........ ....+. ..+..+.+++.+||+.+|++||+|.||++.|+
T Consensus 201 p~~~~~~--~~~~~~~~~~~-----~~~~~~------------~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~ 256 (256)
T cd05112 201 PYENRSN--SEVVETINAGF-----RLYKPR------------LASQSVYELMQHCWKERPEDRPSFSLLLHQLA 256 (256)
T ss_pred CCCcCCH--HHHHHHHhCCC-----CCCCCC------------CCCHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence 9865321 11222111110 001111 12346789999999999999999999998873
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-23 Score=208.23 Aligned_cols=182 Identities=26% Similarity=0.384 Sum_probs=138.5
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCc-cCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYF-LDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~-l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+...+|+.++++++|+|+|+++....++ +..|||+|||..|.+. |.. ...+ +...+..+|++|+..||+|||.
T Consensus 153 ekv~~EIailKkl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~-w~p-~d~~els~~~Ar~ylrDvv~GLEYLH~-- 228 (576)
T KOG0585|consen 153 EKVRREIAILKKLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVK-WCP-PDKPELSEQQARKYLRDVVLGLEYLHY-- 228 (576)
T ss_pred HHHHHHHHHHHhcCCcCeeEEEEeecCcccCceEEEEEeccCCccc-cCC-CCcccccHHHHHHHHHHHHHHHHHHHh--
Confidence 4567899999999999999999988764 4579999999998774 332 2234 8889999999999999999993
Q ss_pred CCCCeeecCCCCcc-------------------c-----------ccccccccccCccccccCCC----cCccccchhhH
Q 040540 524 SSAPIIHCEGEDSV-------------------T-----------QTTTMATIGYMAPEYGSEGI----VSAKCDVYSYG 569 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------~-----------~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~s~G 569 (669)
-+|||||+|++. . ....+||+.|||||.+.++. .+.+.||||+|
T Consensus 229 --QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalG 306 (576)
T KOG0585|consen 229 --QGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALG 306 (576)
T ss_pred --cCeeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhh
Confidence 479999999540 0 11246999999999987622 45789999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|+||.++-|+.||.+.+. ..+ ..+++...+ -++...+....+.+++.+++.+||.+|-+..|
T Consensus 307 VTLYCllfG~~PF~~~~~--~~l-----------~~KIvn~pL-----~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ 368 (576)
T KOG0585|consen 307 VTLYCLLFGQLPFFDDFE--LEL-----------FDKIVNDPL-----EFPENPEINEDLKDLIKRLLEKDPEQRITLPD 368 (576)
T ss_pred hhHHHhhhccCCcccchH--HHH-----------HHHHhcCcc-----cCCCcccccHHHHHHHHHHhhcChhheeehhh
Confidence 999999999999965221 111 112222222 12334456778899999999999999999888
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
|..
T Consensus 369 ik~ 371 (576)
T KOG0585|consen 369 IKL 371 (576)
T ss_pred hee
Confidence 853
|
|
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-23 Score=210.22 Aligned_cols=182 Identities=20% Similarity=0.222 Sum_probs=140.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|+|++++++.+......++||||+++++|.+++.+ ..+++.+...++.+++.|++|||. .+
T Consensus 63 ~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~i~~ql~~aL~~LH~----~g 136 (296)
T cd06654 63 LIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHS----NQ 136 (296)
T ss_pred HHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 456788889999999999999999888889999999999999999864 347888999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......|++.|+|||...+..++.++|||||||++|||++|+.||
T Consensus 137 i~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf 216 (296)
T cd06654 137 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPY 216 (296)
T ss_pred cccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCC
Confidence 9999998430 011235788999999998888899999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
....... ....+..... +.+ ..+......+.+++.+||..+|++||++.|+++
T Consensus 217 ~~~~~~~-~~~~~~~~~~---------~~~-------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~ 269 (296)
T cd06654 217 LNENPLR-ALYLIATNGT---------PEL-------QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269 (296)
T ss_pred CCCCHHH-hHHHHhcCCC---------CCC-------CCccccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence 6532111 1111111000 000 001223345789999999999999999999987
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-23 Score=212.57 Aligned_cols=190 Identities=22% Similarity=0.398 Sum_probs=145.7
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+.++.++ +|+|++++++.|......+++|||+++|+|.+++.... ..+++.++..++.
T Consensus 62 ~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 141 (334)
T cd05100 62 SDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAY 141 (334)
T ss_pred HHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHH
Confidence 4566789999998 79999999999998888999999999999999997421 2478889999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
|+++|++|||. .+++|+|+++... .....++..|+|||+..+..++.++
T Consensus 142 qi~~al~~LH~----~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 217 (334)
T cd05100 142 QVARGMEYLAS----QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQS 217 (334)
T ss_pred HHHHHHHHHHH----CCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchh
Confidence 99999999994 4899999985410 0001134579999999888899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||++ |..||..... ..+...+...... +.+......+.+++.+||+.+|+
T Consensus 218 Di~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~cl~~~p~ 278 (334)
T cd05100 218 DVWSFGVLLWEIFTLGGSPYPGIPV--EELFKLLKEGHRM-----------------DKPANCTHELYMIMRECWHAVPS 278 (334)
T ss_pred hhHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcccChh
Confidence 99999999999999 8888865321 1111111111000 00112234678999999999999
Q ss_pred CCCCHHHHHHHHHHhHH
Q 040540 643 KRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~ 659 (669)
+||+|.|+++.|+++..
T Consensus 279 ~Rps~~ell~~l~~~~~ 295 (334)
T cd05100 279 QRPTFKQLVEDLDRVLT 295 (334)
T ss_pred hCcCHHHHHHHHHHHhh
Confidence 99999999999998874
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-23 Score=207.45 Aligned_cols=191 Identities=21% Similarity=0.255 Sum_probs=145.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|++++..++|+|++++++.+......++||||+++++|.+++.+. ..+++.....++.++++|+.|||+. .
T Consensus 48 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~---~ 123 (284)
T cd06620 48 KQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKG-GPIPVEILGKIAVAVVEGLTYLYNV---H 123 (284)
T ss_pred HHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHh---c
Confidence 35667899999999999999999999989999999999999999998753 4588999999999999999999953 4
Q ss_pred CeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 527 PIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 527 ~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+++|+|+++.. ......|+..|+|||++.+..++.++|||||||++||++||+.||.
T Consensus 124 ~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~ 203 (284)
T cd06620 124 RIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFA 203 (284)
T ss_pred CeeccCCCHHHEEECCCCcEEEccCCcccchhhhccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCc
Confidence 69999988431 0111257899999999888889999999999999999999999997
Q ss_pred cCCCCC------ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 584 EMFTGE------MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 584 ~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
...... ..+..++........ +.+. ..+.+..+.+++.+|++.||++||++.||++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~ 267 (284)
T cd06620 204 FSNIDDDGQDDPMGILDLLQQIVQEPP-----PRLP--------SSDFPEDLRDFVDACLLKDPTERPTPQQLCAMP 267 (284)
T ss_pred ccchhhhhhhhhhHHHHHHHHHhhccC-----CCCC--------chhcCHHHHHHHHHHhcCCcccCcCHHHHhcCc
Confidence 533210 111222222111100 0000 112445688999999999999999999999863
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-23 Score=210.53 Aligned_cols=186 Identities=22% Similarity=0.302 Sum_probs=142.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+.+++|+|++++++.+..+...++||||+++++|.+++.+....+++.....++.+++.|+.|||. .
T Consensus 47 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~----~ 122 (280)
T cd06611 47 EDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHS----H 122 (280)
T ss_pred HHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 356678999999999999999999998889999999999999999998766678999999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCcccccc-----CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......|++.|+|||.+. ...++.++|||||||++|||+
T Consensus 123 ~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~ 202 (280)
T cd06611 123 KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELA 202 (280)
T ss_pred CcccCCCChhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHH
Confidence 79999988431 001124788999999874 344678999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
+|+.||....... .+..+.. ..+ +.+ ..+......+.+++.+||+.+|++||++.+|++.
T Consensus 203 ~g~~p~~~~~~~~-~~~~~~~-~~~--------~~~-------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (280)
T cd06611 203 QMEPPHHELNPMR-VLLKILK-SEP--------PTL-------DQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH 262 (280)
T ss_pred hCCCCcccCCHHH-HHHHHhc-CCC--------CCc-------CCcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence 9999986532111 1111110 000 000 0112233457899999999999999999999763
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-23 Score=208.48 Aligned_cols=188 Identities=23% Similarity=0.414 Sum_probs=140.6
Q ss_pred ccCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhc-----CCCccCHHHHHHHHHhHHhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYS-----HNYFLDILERLNIMIDVGSA 515 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~-----~~~~l~~~~~~~i~~~i~~~ 515 (669)
+.+..|...+..++|+|++++++.|... ...+++|||+++|+|.+++.. ....+++.....++.|++.|
T Consensus 45 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 124 (272)
T cd05075 45 EDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASG 124 (272)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHH
Confidence 4567788899999999999999877432 245789999999999998742 22357899999999999999
Q ss_pred hhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhh
Q 040540 516 LEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 516 l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
++|||+ .+++|+|+|+... .....+++.|+|||+.....++.++|||||
T Consensus 125 l~~lH~----~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~sl 200 (272)
T cd05075 125 MEYLSS----KSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSF 200 (272)
T ss_pred HHHHHH----CCeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHH
Confidence 999995 4799999984310 001124567999999988889999999999
Q ss_pred HHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 569 GVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 569 Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||++|||++ |+.||.... ...+...+.... .. +.+...+..+.+++.+||+.+|++|||+
T Consensus 201 G~il~el~~~g~~p~~~~~--~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~li~~~l~~~p~~Rps~ 261 (272)
T cd05075 201 GVTMWEIATRGQTPYPGVE--NSEIYDYLRQGN--RL---------------KQPPDCLDGLYSLMSSCWLLNPKDRPSF 261 (272)
T ss_pred HHHHHHHHcCCCCCCCCCC--HHHHHHHHHcCC--CC---------------CCCCCCCHHHHHHHHHHcCCCcccCcCH
Confidence 999999999 788886522 111222121110 00 0011233457899999999999999999
Q ss_pred HHHHHHHHHh
Q 040540 648 TDAAAKLKKI 657 (669)
Q Consensus 648 ~~v~~~l~~~ 657 (669)
.++++.|+++
T Consensus 262 ~~l~~~l~~~ 271 (272)
T cd05075 262 ETLRCELEKA 271 (272)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-23 Score=210.93 Aligned_cols=177 Identities=20% Similarity=0.208 Sum_probs=135.3
Q ss_pred chhhhhhcc-ccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 450 DSECEVLRN-VRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 450 ~~e~~~l~~-l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
..|...+.. .+|||++++++.+...+..++||||+++|+|.+++... ..+++.+...++.|+++|++|||. .++
T Consensus 43 ~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~LH~----~~i 117 (316)
T cd05619 43 MVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQSC-HKFDLPRATFYAAEIICGLQFLHS----KGI 117 (316)
T ss_pred HHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHh----CCe
Confidence 345556654 48999999999999888999999999999999999753 457888999999999999999994 489
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus 118 vHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~ 197 (316)
T cd05619 118 VYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFH 197 (316)
T ss_pred EeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCC
Confidence 999998430 0112348999999999988889999999999999999999999996
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH-HHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT-DAA 651 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~-~v~ 651 (669)
... ...+.+.+....+. . +......+.+++.+|++.||++||++. ++.
T Consensus 198 ~~~--~~~~~~~i~~~~~~-----~-------------~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~ 246 (316)
T cd05619 198 GHD--EEELFQSIRMDNPC-----Y-------------PRWLTREAKDILVKLFVREPERRLGVKGDIR 246 (316)
T ss_pred CCC--HHHHHHHHHhCCCC-----C-------------CccCCHHHHHHHHHHhccCHhhcCCChHHHH
Confidence 532 11122222111100 0 111234567999999999999999997 553
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-23 Score=209.03 Aligned_cols=190 Identities=19% Similarity=0.332 Sum_probs=147.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|+|++++++.|.. ...+++|||+++|+|.+++.+....+++.....++.|+++|++|||. .
T Consensus 54 ~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~----~ 128 (279)
T cd05057 54 KEILDEAYVMASVDHPHVVRLLGICLS-SQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEE----K 128 (279)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEec-CceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 356678899999999999999999876 67789999999999999998766678999999999999999999994 5
Q ss_pred CeeecCCCCccc--------------------c-------cccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSVT--------------------Q-------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------~-------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+++|+|+++... . ....++..|+|||......++.++|||||||++||++| |
T Consensus 129 ~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g 208 (279)
T cd05057 129 RLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFG 208 (279)
T ss_pred CEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCC
Confidence 899999985310 0 00112457999999888889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||..... ..+.+.+...... +.+..+...+.+++.+||..+|.+||++.++++.++++.
T Consensus 209 ~~p~~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~ 269 (279)
T cd05057 209 AKPYEGIPA--VEIPDLLEKGERL-----------------PQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMA 269 (279)
T ss_pred CCCCCCCCH--HHHHHHHhCCCCC-----------------CCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 999865321 1222222211100 001122345789999999999999999999999999875
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 270 ~~ 271 (279)
T cd05057 270 RD 271 (279)
T ss_pred hC
Confidence 43
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=214.53 Aligned_cols=199 Identities=19% Similarity=0.218 Sum_probs=141.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.+++.++||||+++++++......++|+||+. ++|.+++... ..+++.+...|+.++++||+|||. .+
T Consensus 129 ~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~ylH~----~~ 202 (391)
T PHA03212 129 GTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDLYCYLAAK-RNIAICDILAIERSVLRAIQYLHE----NR 202 (391)
T ss_pred hhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 34579999999999999999999988888999999996 7899888753 458899999999999999999995 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.|
T Consensus 203 IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p 282 (391)
T PHA03212 203 IIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDS 282 (391)
T ss_pred cccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 9999999530 00123589999999999888899999999999999999999988
Q ss_pred CCcCCC--C----CccHHHHHHHh--CCCCcc----cccccc----------ccchhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 582 TDEMFT--G----EMSLRRWVKES--LPHRLS----EVVDTN----------LVREEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 582 ~~~~~~--~----~~~l~~~~~~~--~~~~~~----~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
+..... + ...+...++.. .+.... ..++.. .....+........+..+.+++.+|++.
T Consensus 283 ~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~ 362 (391)
T PHA03212 283 LFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAF 362 (391)
T ss_pred cCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcC
Confidence 754211 0 11111111110 000000 000000 0000000011123455788999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
||.+|||++|+++
T Consensus 363 dP~~Rpta~elL~ 375 (391)
T PHA03212 363 DAHHRPSAEALLD 375 (391)
T ss_pred ChhhCCCHHHHhc
Confidence 9999999999985
|
|
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-23 Score=206.23 Aligned_cols=181 Identities=17% Similarity=0.208 Sum_probs=141.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..++.++|+|++++++.+......++||||+++++|.+++.. ..+++.....++.++++|+.|+|+ .
T Consensus 47 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~----~ 120 (277)
T cd06642 47 EDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKP--GPLEETYIATILREILKGLDYLHS----E 120 (277)
T ss_pred HHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhc----C
Confidence 3567789999999999999999999988899999999999999999864 457888999999999999999995 4
Q ss_pred CeeecCCCCccc-------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSVT-------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~~-------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++... .....|+..|+|||+..+..++.++|||||||++|||+||+.|
T Consensus 121 ~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p 200 (277)
T cd06642 121 RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPP 200 (277)
T ss_pred CeeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCC
Confidence 799999885410 0112367889999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+....... ...+..... .+.+ ....+..+.+++.+||+.+|++||+|.||++
T Consensus 201 ~~~~~~~~--~~~~~~~~~--------~~~~---------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 252 (277)
T cd06642 201 NSDLHPMR--VLFLIPKNS--------PPTL---------EGQYSKPFKEFVEACLNKDPRFRPTAKELLK 252 (277)
T ss_pred Ccccchhh--HHhhhhcCC--------CCCC---------CcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence 86532211 111111110 0111 1123456789999999999999999999998
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-23 Score=213.50 Aligned_cols=181 Identities=23% Similarity=0.278 Sum_probs=133.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++|+|++++++++......++||||+++|+|.+.. ...+.....++.++++||+|||. .
T Consensus 117 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~-----~~~~~~~~~i~~qi~~aL~~LH~----~ 187 (353)
T PLN00034 117 RQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTH-----IADEQFLADVARQILSGIAYLHR----R 187 (353)
T ss_pred HHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCcccccc-----cCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 34667999999999999999999998888999999999999986532 24566777899999999999994 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccC-----CCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-----GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|... ......||..|+|||++.. ...+.++|||||||++|||+
T Consensus 188 ~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~ 267 (353)
T PLN00034 188 HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFY 267 (353)
T ss_pred CEeecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHH
Confidence 79999998420 0122358999999998743 23456899999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||....... ............. +. .+......+.+++.+||+.||++||++.|+++
T Consensus 268 ~g~~pf~~~~~~~--~~~~~~~~~~~~~-----~~---------~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~ 327 (353)
T PLN00034 268 LGRFPFGVGRQGD--WASLMCAICMSQP-----PE---------APATASREFRHFISCCLQREPAKRWSAMQLLQ 327 (353)
T ss_pred hCCCCCCCCCCcc--HHHHHHHHhccCC-----CC---------CCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9999997422111 1111111000000 00 01233456789999999999999999999986
|
|
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-23 Score=205.47 Aligned_cols=183 Identities=16% Similarity=0.193 Sum_probs=141.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|...++.++|+|++++++.+......+++|||+++|++.+++.. ....++......++.++++|+.|||. .
T Consensus 44 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~----~ 119 (255)
T cd08219 44 DSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHE----K 119 (255)
T ss_pred HHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhh----C
Confidence 455688889999999999999999888899999999999999999865 33457888899999999999999994 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......|+..|+|||+..+..++.++||||||+++|||++|+.|
T Consensus 120 ~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p 199 (255)
T cd08219 120 RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHP 199 (255)
T ss_pred CcccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCC
Confidence 79999988541 01123478889999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
|..... ............. .+ +......+.+++.+||+.||++||++.|++..
T Consensus 200 ~~~~~~-----~~~~~~~~~~~~~-~~-------------~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~ 252 (255)
T cd08219 200 FQANSW-----KNLILKVCQGSYK-PL-------------PSHYSYELRSLIKQMFKRNPRSRPSATTILSR 252 (255)
T ss_pred CCCCCH-----HHHHHHHhcCCCC-CC-------------CcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence 865211 1111111000000 00 11233457899999999999999999999764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-23 Score=212.34 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=135.4
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|..++..+ +|||++++++++......++||||+++|+|.+++... ..+++..+..++.|++.|++|||. .+
T Consensus 42 ~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~-~~l~~~~~~~~~~qi~~~l~~lH~----~~ 116 (329)
T cd05588 42 VQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNFLHE----RG 116 (329)
T ss_pred HHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45677777777 6999999999998888999999999999999998753 468999999999999999999994 48
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 117 ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf 196 (329)
T cd05588 117 IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 196 (329)
T ss_pred eEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCc
Confidence 9999998430 011235899999999999888999999999999999999999999
Q ss_pred CcCCCC---CccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 583 DEMFTG---EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 583 ~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
+..... ......+........... .+......+.+++.+|++.||.+||+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~p~~~~~~~~~li~~~L~~dP~~R~~ 249 (329)
T cd05588 197 DIVGMSDNPDQNTEDYLFQVILEKQIR--------------IPRSLSVKASSVLKGFLNKDPKERLG 249 (329)
T ss_pred ccccccccccccchHHHHHHHHcCCCC--------------CCCCCCHHHHHHHHHHhccCHHHcCC
Confidence 642211 111112221111110000 01122345789999999999999997
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-23 Score=212.68 Aligned_cols=174 Identities=22% Similarity=0.219 Sum_probs=133.9
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|...+... +|||++++++++...+..++||||+++|+|.+++... ..+++.....++.|+++|++|||. .+
T Consensus 42 ~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~~~-~~l~~~~~~~~~~ql~~~L~~lH~----~~ 116 (320)
T cd05590 42 TMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKS-RRFDEARARFYAAEITSALMFLHD----KG 116 (320)
T ss_pred HHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 44566666655 6999999999998888999999999999999999754 458889999999999999999994 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 117 ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf 196 (320)
T cd05590 117 IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPF 196 (320)
T ss_pred eEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCC
Confidence 9999998430 011234899999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.... ...+...+.. ... .. +......+.+++.+|++.||++||++
T Consensus 197 ~~~~--~~~~~~~i~~---~~~---~~------------~~~~~~~~~~li~~~L~~dP~~R~~~ 241 (320)
T cd05590 197 EAEN--EDDLFEAILN---DEV---VY------------PTWLSQDAVDILKAFMTKNPTMRLGS 241 (320)
T ss_pred CCCC--HHHHHHHHhc---CCC---CC------------CCCCCHHHHHHHHHHcccCHHHCCCC
Confidence 7532 1111111111 100 00 11223457899999999999999998
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-23 Score=194.04 Aligned_cols=172 Identities=21% Similarity=0.202 Sum_probs=135.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
....|..++..+.||.++++++.|.+.+..++||||.++|.|+.++++. ..++.....-++.+|+-|++|||+ ..
T Consensus 90 H~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk~-~rF~e~~arFYAAeivlAleylH~----~~ 164 (355)
T KOG0616|consen 90 HTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLRKS-GRFSEPHARFYAAEIVLALEYLHS----LD 164 (355)
T ss_pred HHhhHHHHHhhccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHh----cC
Confidence 4456888999999999999999999999999999999999999999864 457888888899999999999995 47
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
|+.||+|+.. ...+.+|||.|+|||++....|+.++|+|||||++|||+.|.+||.+.
T Consensus 165 iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~ 244 (355)
T KOG0616|consen 165 IIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDD 244 (355)
T ss_pred eeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCC
Confidence 9999999641 122347999999999999999999999999999999999999999763
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
.+ ..+-+- ++.-.+ ..|.....++.+++.+.++.|=.+|
T Consensus 245 ~~--~~iY~K-----------I~~~~v-------~fP~~fs~~~kdLl~~LL~vD~t~R 283 (355)
T KOG0616|consen 245 NP--IQIYEK-----------ILEGKV-------KFPSYFSSDAKDLLKKLLQVDLTKR 283 (355)
T ss_pred Ch--HHHHHH-----------HHhCcc-------cCCcccCHHHHHHHHHHHhhhhHhh
Confidence 32 111110 110000 0122334456778888888887777
|
|
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-23 Score=212.82 Aligned_cols=195 Identities=19% Similarity=0.154 Sum_probs=136.0
Q ss_pred cCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+.+++.++|||++++++++... ...++|||||. ++|.+++... ..+++.....++.|+++||+|||.
T Consensus 45 ~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH~- 121 (338)
T cd07859 45 RILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SDLHQVIKAN-DDLTPEHHQFFLYQLLRALKYIHT- 121 (338)
T ss_pred HHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEecCC-CCHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHH-
Confidence 456789999999999999999887542 23689999996 6899998753 458899999999999999999995
Q ss_pred CCCCCeeecCCCCcc-----------------------c-----ccccccccccCccccccC--CCcCccccchhhHHHH
Q 040540 523 HSSAPIIHCEGEDSV-----------------------T-----QTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLL 572 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~-----------------------~-----~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil 572 (669)
.+++|+|+|+.. . .....||+.|+|||++.+ ..++.++|||||||++
T Consensus 122 ---~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl 198 (338)
T cd07859 122 ---ANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIF 198 (338)
T ss_pred ---CCeecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHH
Confidence 479999998420 0 012358899999998865 5689999999999999
Q ss_pred HHHHhCCCCCCcCCCCCccHHHHHHHhCCCCc------------ccc---ccccccchhhhhhhhHHHHHHHHHHHhhcc
Q 040540 573 METFTRKRPTDEMFTGEMSLRRWVKESLPHRL------------SEV---VDTNLVREEQAFSAKMDCLLSIMDLALDCC 637 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~ 637 (669)
|||+||+.||..... ......+........ .+. +.+..... ...........+.+++.+||
T Consensus 199 ~el~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l 274 (338)
T cd07859 199 AEVLTGKPLFPGKNV--VHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVP--FSQKFPNADPLALRLLERLL 274 (338)
T ss_pred HHHHcCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCc--hHHhcCCCChHHHHHHHHHc
Confidence 999999999865221 111111111100000 000 00000000 00000123356789999999
Q ss_pred cCCCCCCCCHHHHHH
Q 040540 638 MESPDKRMHMTDAAA 652 (669)
Q Consensus 638 ~~~P~~Rps~~~v~~ 652 (669)
+.||++||+++|+++
T Consensus 275 ~~~P~~Rpt~~e~l~ 289 (338)
T cd07859 275 AFDPKDRPTAEEALA 289 (338)
T ss_pred CcCcccCCCHHHHhc
Confidence 999999999999986
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=203.67 Aligned_cols=187 Identities=22% Similarity=0.284 Sum_probs=143.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++.+......+++|||+++++|.+++......+++.+...++.+++.|++|||. .
T Consensus 45 ~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~----~ 120 (262)
T cd06613 45 EIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHE----T 120 (262)
T ss_pred HHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 456678999999999999999999988888999999999999999998655678999999999999999999994 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCC---CcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG---IVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......|+..|+|||..... .++.++|||||||++|||+||
T Consensus 121 ~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg 200 (262)
T cd06613 121 GKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAEL 200 (262)
T ss_pred CceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhC
Confidence 79999988431 01122467889999998766 788999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.|+....... ..........+. +.+. .....+..+.+++.+||..+|.+||++.+|+.
T Consensus 201 ~~p~~~~~~~~-~~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 259 (262)
T cd06613 201 QPPMFDLHPMR-ALFLISKSNFPP-------PKLK-------DKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ 259 (262)
T ss_pred CCCCCCCCHHH-HHHHHHhccCCC-------cccc-------chhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 99987532111 111111110000 0010 12234456789999999999999999999874
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=202.24 Aligned_cols=190 Identities=17% Similarity=0.279 Sum_probs=136.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+..++.++|||++++++.|......++||||+++|+|.+++++.. ...++.....++.++++|++|||.
T Consensus 40 ~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~-- 117 (268)
T cd05086 40 NEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHK-- 117 (268)
T ss_pred HHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH--
Confidence 356778888889999999999999998888999999999999999997532 235666778899999999999995
Q ss_pred CCCCeeecCCCCccc---------------------------ccccccccccCccccccC-------CCcCccccchhhH
Q 040540 524 SSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSE-------GIVSAKCDVYSYG 569 (669)
Q Consensus 524 ~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~G 569 (669)
.+++|+|+|+... .....|+..|+|||+... ..++.++||||||
T Consensus 118 --~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG 195 (268)
T cd05086 118 --HNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALG 195 (268)
T ss_pred --CCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHH
Confidence 4799999985410 011236778999998743 2357899999999
Q ss_pred HHHHHHHhC-CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 570 VLLMETFTR-KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 570 vil~el~tg-~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
|++|||+++ ..||.... ....+....+.. .....++.+.. .....+.+++..|| .+|++||+|+
T Consensus 196 ~~l~el~~~~~~p~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~l~~~c~-~~P~~Rp~~~ 260 (268)
T cd05086 196 VTLWELFENAAQPYSHLS-DREVLNHVIKDQ----QVKLFKPQLEL---------PYSERWYEVLQFCW-LSPEKRATAE 260 (268)
T ss_pred HHHHHHHhCCCCCCCCCC-HHHHHHHHHhhc----ccccCCCccCC---------CCcHHHHHHHHHHh-hCcccCCCHH
Confidence 999999974 66775421 111111111111 11112222211 12345678889999 6799999999
Q ss_pred HHHHHHH
Q 040540 649 DAAAKLK 655 (669)
Q Consensus 649 ~v~~~l~ 655 (669)
+|++.|.
T Consensus 261 ~i~~~l~ 267 (268)
T cd05086 261 EVHRLLT 267 (268)
T ss_pred HHHHHhc
Confidence 9998874
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-23 Score=215.80 Aligned_cols=176 Identities=19% Similarity=0.195 Sum_probs=137.2
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+..|+.++.+++|+|++++++.+..+...++||||+++|+|.+++.+. ..+++.....++.++++||+|||. .++
T Consensus 45 ~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~----~~i 119 (318)
T cd05582 45 TKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE-VMFTEEDVKFYLAELALALDHLHS----LGI 119 (318)
T ss_pred HHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CCE
Confidence 456888999999999999999999888999999999999999999753 468999999999999999999994 479
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+|+|+++.. ......||+.|+|||+..+..++.++|||||||++|||+||+.||.
T Consensus 120 ~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~ 199 (318)
T cd05582 120 IYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQ 199 (318)
T ss_pred ecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCC
Confidence 999998420 0112358999999999988888999999999999999999999996
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
.... ......+. .... .+ +......+.+++.+||+.||++||++.+
T Consensus 200 ~~~~--~~~~~~i~---~~~~--~~-------------p~~~~~~~~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 200 GKDR--KETMTMIL---KAKL--GM-------------PQFLSPEAQSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred CCCH--HHHHHHHH---cCCC--CC-------------CCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence 5321 11111111 1100 00 1122345679999999999999999655
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-23 Score=210.95 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=128.9
Q ss_pred hhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCC
Q 040540 455 VLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGE 534 (669)
Q Consensus 455 ~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~ 534 (669)
.+..++|||++++++++......++||||+++|+|..+++. ..+++.....++.+++.|++|||. .+++|||+|
T Consensus 55 ~~~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~----~~ivHrdlk 128 (324)
T cd05589 55 TANSERHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIHT--DVFSEPRAVFYAACVVLGLQYLHE----NKIVYRDLK 128 (324)
T ss_pred hccccCCCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHh----CCeEecCCC
Confidence 34567899999999999988999999999999999998864 458999999999999999999994 479999998
Q ss_pred Ccc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCC
Q 040540 535 DSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589 (669)
Q Consensus 535 ~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~ 589 (669)
+.. ......||+.|||||++.+..++.++|||||||++|||++|+.||.....
T Consensus 129 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~-- 206 (324)
T cd05589 129 LDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE-- 206 (324)
T ss_pred HHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH--
Confidence 430 01123489999999999888899999999999999999999999865321
Q ss_pred ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 590 MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
......+..... . .+......+.+++.+|++.||++||++
T Consensus 207 ~~~~~~i~~~~~---------~---------~p~~~~~~~~~li~~~L~~dP~~R~~~ 246 (324)
T cd05589 207 EEVFDSIVNDEV---------R---------YPRFLSREAISIMRRLLRRNPERRLGS 246 (324)
T ss_pred HHHHHHHHhCCC---------C---------CCCCCCHHHHHHHHHHhhcCHhHcCCC
Confidence 111111111000 0 011223456789999999999999953
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-23 Score=211.60 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=134.7
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|...+..+ +|||++++++++......++||||+++|+|..++... ..+++.....++.+++.|++|||. .+
T Consensus 42 ~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~----~~ 116 (329)
T cd05618 42 VQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHE----RG 116 (329)
T ss_pred HHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 44566666655 7999999999998888999999999999999988753 458899999999999999999994 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 117 ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf 196 (329)
T cd05618 117 IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 196 (329)
T ss_pred eeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCC
Confidence 9999998430 011235899999999999888999999999999999999999999
Q ss_pred CcCCCC---CccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 583 DEMFTG---EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 583 ~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
...... ......++......... . .+......+.+++.+|++.||++||++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~-----~---------~p~~~~~~~~~ll~~~L~~dP~~R~~~ 250 (329)
T cd05618 197 DIVGSSDNPDQNTEDYLFQVILEKQI-----R---------IPRSLSVKAASVLKSFLNKDPKERLGC 250 (329)
T ss_pred ccCCCcCCcccccHHHHHHHHhcCCC-----C---------CCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence 642211 11112222211111000 0 012233457899999999999999984
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=202.43 Aligned_cols=186 Identities=21% Similarity=0.365 Sum_probs=143.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+.+++.++|+|++++.+.+.. ...+++|||+++|+|.+++.+. ....++..+..++.+++.|+.|||.
T Consensus 46 ~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~---- 120 (260)
T cd05073 46 EAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ---- 120 (260)
T ss_pred HHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHh----
Confidence 356678999999999999999988876 6678999999999999999753 3457888999999999999999995
Q ss_pred CCeeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|+|+++... .....++..|+|||++....++.++|||||||++||++| |
T Consensus 121 ~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g 200 (260)
T cd05073 121 RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYG 200 (260)
T ss_pred CCccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcC
Confidence 4799999885410 001124567999999988889999999999999999999 8
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
+.||.... ...+..+....... +.+...+..+.+++.+|++.+|++||++.++.+.|+.
T Consensus 201 ~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 201 RIPYPGMS--NPEVIRALERGYRM-----------------PRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred CCCCCCCC--HHHHHHHHhCCCCC-----------------CCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 99986532 12223332221110 0012234567899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-23 Score=215.26 Aligned_cols=181 Identities=19% Similarity=0.172 Sum_probs=139.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++.+......++||||+++|+|.+++... ..+++.....++.|+++||+|||. ..+
T Consensus 41 ~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH~---~~~ 116 (325)
T cd05594 41 HTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALDYLHS---EKN 116 (325)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh---cCC
Confidence 3456788888999999999999998888999999999999999998753 468899999999999999999994 247
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 117 ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf 196 (325)
T cd05594 117 VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPF 196 (325)
T ss_pred EEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCC
Confidence 9999999541 001224899999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
..... ......+.. ... .+ +......+.+++.+|++.||++|+ ++.++++
T Consensus 197 ~~~~~--~~~~~~i~~---~~~------~~---------p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~ 251 (325)
T cd05594 197 YNQDH--EKLFELILM---EEI------RF---------PRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ 251 (325)
T ss_pred CCCCH--HHHHHHHhc---CCC------CC---------CCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence 65321 111111110 000 00 112234578999999999999996 8888864
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-23 Score=206.69 Aligned_cols=194 Identities=23% Similarity=0.374 Sum_probs=146.8
Q ss_pred cccCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+.+..|+..++.+.|+|++++++++.. ....+++|||+++++|.+++......+++..+..++.+++.|++|||.
T Consensus 50 ~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~-- 127 (284)
T cd05038 50 RSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGS-- 127 (284)
T ss_pred HHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHh--
Confidence 3467788999999999999999998876 557889999999999999998755568999999999999999999994
Q ss_pred CCCCeeecCCCCccc-------------------c---------cccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 524 SSAPIIHCEGEDSVT-------------------Q---------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 524 ~~~~i~h~d~~~~~~-------------------~---------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.+++|+|+++... . ....++..|+|||......++.++||||||+++|||
T Consensus 128 --~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el 205 (284)
T cd05038 128 --QRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYEL 205 (284)
T ss_pred --CCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhhee
Confidence 4799999984310 0 001234569999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCcc----------HHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 576 FTRKRPTDEMFTGEMS----------LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
+||+.|+......... ...+.... .. ..+.+.+..+...+.+++.+||+.+|++||
T Consensus 206 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp 271 (284)
T cd05038 206 FTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELL---------KE-----GERLPRPPSCPDEVYDLMKLCWEAEPQDRP 271 (284)
T ss_pred eccCCCcccccchhccccccccccccHHHHHHHH---------Hc-----CCcCCCCccCCHHHHHHHHHHhccChhhCC
Confidence 9999997653221110 11111000 00 001111223346688999999999999999
Q ss_pred CHHHHHHHHHHh
Q 040540 646 HMTDAAAKLKKI 657 (669)
Q Consensus 646 s~~~v~~~l~~~ 657 (669)
+|.||+++|+++
T Consensus 272 t~~ei~~~l~~i 283 (284)
T cd05038 272 SFADLILIVDRL 283 (284)
T ss_pred CHHHHHHHHhhc
Confidence 999999999876
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-23 Score=207.62 Aligned_cols=187 Identities=20% Similarity=0.396 Sum_probs=143.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC--------CccCHHHHHHHHHhHHhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--------YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--------~~l~~~~~~~i~~~i~~~l~~ 518 (669)
..+..|+.++.+++|+|++++++++......++||||+++|+|.+++.... ..+++..+..++.++++|++|
T Consensus 53 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~ 132 (275)
T cd05046 53 SEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDH 132 (275)
T ss_pred HHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence 356779999999999999999999988888999999999999999997533 158999999999999999999
Q ss_pred hhcCCCCCCeeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLL 572 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil 572 (669)
||. .+++|+|+++... .....++..|+|||...+..++.++|||||||++
T Consensus 133 LH~----~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l 208 (275)
T cd05046 133 LSN----ARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLM 208 (275)
T ss_pred hhh----cCcccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHH
Confidence 994 4799999995410 0112356679999998887788999999999999
Q ss_pred HHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 573 METFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 573 ~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
|||++ |..||..... ..+....... ..... .+...+..+.+++.+||+.+|++||++.|++
T Consensus 209 ~~l~~~~~~p~~~~~~--~~~~~~~~~~---~~~~~-------------~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l 270 (275)
T cd05046 209 WEVFTQGELPFYGLSD--EEVLNRLQAG---KLELP-------------VPEGCPSRLYKLMTRCWAVNPKDRPSFSELV 270 (275)
T ss_pred HHHHhCCCCCccccch--HHHHHHHHcC---CcCCC-------------CCCCCCHHHHHHHHHHcCCCcccCCCHHHHH
Confidence 99999 7788854221 1122211111 00000 0112234678999999999999999999999
Q ss_pred HHHH
Q 040540 652 AKLK 655 (669)
Q Consensus 652 ~~l~ 655 (669)
++|.
T Consensus 271 ~~l~ 274 (275)
T cd05046 271 SALG 274 (275)
T ss_pred HHhc
Confidence 9875
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-23 Score=203.86 Aligned_cols=186 Identities=28% Similarity=0.454 Sum_probs=144.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.+++.+.|+|++++++++......++||||+++++|.++++.....+++.....++.+++.|++|||. .
T Consensus 37 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~ 112 (251)
T cd05041 37 RKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLES----K 112 (251)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 356678999999999999999999998889999999999999999997655568888999999999999999994 4
Q ss_pred CeeecCCCCcccc---------------------c------ccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSVTQ---------------------T------TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~~~---------------------~------~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+++|+|+++.... . ...++..|+|||.+.+..++.++|||||||++|||+| |
T Consensus 113 ~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~ 192 (251)
T cd05041 113 NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLG 192 (251)
T ss_pred CEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhcc
Confidence 7999999854100 0 0112456999999988889999999999999999999 7
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
..||..... ......+..... .+.+...+..+.+++.+|+..+|++||++.|+++.|+
T Consensus 193 ~~p~~~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 193 DTPYPGMSN--QQTRERIESGYR-----------------MPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred CCCCccCCH--HHHHHHHhcCCC-----------------CCCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence 888865321 112222111100 0112233456889999999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=207.83 Aligned_cols=200 Identities=21% Similarity=0.227 Sum_probs=143.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+..++.++|+|++++++.+...+..+++|||+++|++.+++.+. ...+++.....++.++++|++|||.
T Consensus 44 ~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~---- 119 (314)
T cd08216 44 KLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHS---- 119 (314)
T ss_pred HHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 35677899999999999999999998888899999999999999999753 3457888889999999999999995
Q ss_pred CCeeecCCCCccc--------------------------------ccccccccccCccccccC--CCcCccccchhhHHH
Q 040540 526 APIIHCEGEDSVT--------------------------------QTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVL 571 (669)
Q Consensus 526 ~~i~h~d~~~~~~--------------------------------~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvi 571 (669)
.+|+|+|+++... .....++..|+|||++.. ..++.++|||||||+
T Consensus 120 ~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~i 199 (314)
T cd08216 120 KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGIT 199 (314)
T ss_pred CCeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHH
Confidence 4799999884310 011235678999999866 348899999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccc----------------cccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSE----------------VVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
+|||++|+.||...... ..+.+......+..+.. ..++... .............++.+++.+
T Consensus 200 l~el~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~ 277 (314)
T cd08216 200 ACELANGHVPFKDMPAT-QMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNR-DSVDHPYTRTFSEHFHQFVEL 277 (314)
T ss_pred HHHHHhCCCCCCCCCHH-HHHHHHHhccCccccccCchhhhcCCcCcccccccccchh-hhhhcchhhHHHHHHHHHHHH
Confidence 99999999999753211 11111111111110000 0000000 001111223445678899999
Q ss_pred cccCCCCCCCCHHHHHH
Q 040540 636 CCMESPDKRMHMTDAAA 652 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~ 652 (669)
||+.||++|||++++++
T Consensus 278 ~l~~~P~~Rpt~~~ll~ 294 (314)
T cd08216 278 CLQRDPESRPSASQLLN 294 (314)
T ss_pred HhhcCCCcCcCHHHHhc
Confidence 99999999999999987
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=203.18 Aligned_cols=189 Identities=23% Similarity=0.326 Sum_probs=135.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC----CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+..++.++|+|++++++.|......++||||+++|+|.+++.... ...++.....++.|+++|++|||.
T Consensus 41 ~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~-- 118 (269)
T cd05042 41 LFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ-- 118 (269)
T ss_pred HHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh--
Confidence 45678888899999999999999998888999999999999999997632 224567778999999999999994
Q ss_pred CCCCeeecCCCCccc---------------------------ccccccccccCccccccC-------CCcCccccchhhH
Q 040540 524 SSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSE-------GIVSAKCDVYSYG 569 (669)
Q Consensus 524 ~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~G 569 (669)
.+++|+|+|+... .....++..|+|||+... ..++.++||||||
T Consensus 119 --~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG 196 (269)
T cd05042 119 --ADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLG 196 (269)
T ss_pred --cCEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHH
Confidence 4799999994310 001124567999998642 3467899999999
Q ss_pred HHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 570 VLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 570 vil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
|++|||++ |+.||..... ...+...+.... .+...+.+ .......+.+++..|| .||++||+++
T Consensus 197 ~~l~el~~~~~~p~~~~~~-~~~~~~~~~~~~----~~~~~~~~---------~~~~~~~~~~~~~~~~-~dp~~Rpt~~ 261 (269)
T cd05042 197 VTMWELFTAADQPYPDLSD-EQVLKQVVREQD----IKLPKPQL---------DLKYSDRWYEVMQFCW-LDPETRPTAE 261 (269)
T ss_pred HHHHHHHhCCCCCCCcCCH-HHHHHHHhhccC----ccCCCCcc---------cccCCHHHHHHHHHHh-cCcccccCHH
Confidence 99999999 7788865321 111111111111 01111111 1122344567888898 5999999999
Q ss_pred HHHHHHH
Q 040540 649 DAAAKLK 655 (669)
Q Consensus 649 ~v~~~l~ 655 (669)
||++.|.
T Consensus 262 ~v~~~l~ 268 (269)
T cd05042 262 EVHELLT 268 (269)
T ss_pred HHHHHhc
Confidence 9998863
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-23 Score=207.55 Aligned_cols=180 Identities=24% Similarity=0.312 Sum_probs=145.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+...+|+++++.++||||+.++.++......++|.||+.+ +|+.+|.. ...+++.....|+.+.+.||.||| +.
T Consensus 46 ~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~g-~L~~il~~-d~~lpEe~v~~~a~~LVsaL~yLh----s~ 119 (808)
T KOG0597|consen 46 KNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAVG-DLFTILEQ-DGKLPEEQVRAIAYDLVSALYYLH----SN 119 (808)
T ss_pred HHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhhh-hHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHH----hc
Confidence 4567899999999999999999999999999999999985 99999985 456999999999999999999999 45
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+. ...++..|||.|||||...+..|+..+|.||+|||+||+.+|++|
T Consensus 120 rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PP 199 (808)
T KOG0597|consen 120 RILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPP 199 (808)
T ss_pred CcccccCCcceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCC
Confidence 8999999853 112233599999999999999999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|... . +.+.++.-..+.+ ..+......+..+....+.+||.+|-+-.+++.
T Consensus 200 F~a~--s---i~~Lv~~I~~d~v---------------~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~ 250 (808)
T KOG0597|consen 200 FYAR--S---ITQLVKSILKDPV---------------KPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLG 250 (808)
T ss_pred chHH--H---HHHHHHHHhcCCC---------------CCcccccHHHHHHHHHHhhcChhhcccHHHHhc
Confidence 9652 1 2222222211110 013355667889999999999999999877654
|
|
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=201.75 Aligned_cols=186 Identities=20% Similarity=0.359 Sum_probs=142.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+..++.++|+|++++++.+. ....+++|||+++|+|.+++... +..+++.++..++.+++.|++|||.
T Consensus 46 ~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~---- 120 (260)
T cd05067 46 EAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIER---- 120 (260)
T ss_pred HHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhc----
Confidence 35667899999999999999998764 45678999999999999998753 3468899999999999999999994
Q ss_pred CCeeecCCCCcc--------------------c------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------T------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------~------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|+|+++.. . .....++..|+|||+.....++.++|||||||++||+++ |
T Consensus 121 ~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g 200 (260)
T cd05067 121 KNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYG 200 (260)
T ss_pred CCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCC
Confidence 479999998431 0 001124567999999988888999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
+.||.... ...+.......... +.+...+..+.+++.+|++.+|++||+++++.+.|+.
T Consensus 201 ~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 259 (260)
T cd05067 201 RIPYPGMT--NPEVIQNLERGYRM-----------------PRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED 259 (260)
T ss_pred CCCCCCCC--hHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence 99987532 11122222111100 0011223468899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-23 Score=207.86 Aligned_cols=185 Identities=20% Similarity=0.258 Sum_probs=140.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++.+..+...++||||++++++..++.+....+++.....++.|+++|++|||. .
T Consensus 54 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~----~ 129 (292)
T cd06644 54 EDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHS----M 129 (292)
T ss_pred HHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhc----C
Confidence 456678889999999999999999988888999999999999999887655678999999999999999999994 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCcccccc-----CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......|+..|+|||++. ...++.++|||||||++|||+
T Consensus 130 ~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~ 209 (292)
T cd06644 130 KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA 209 (292)
T ss_pred CeeecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHh
Confidence 79999998531 001123678899999874 344688999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.|+..... . ..+........ +.. ..+.....++.+++.+||..+|++||+++|+++
T Consensus 210 ~g~~p~~~~~~----~-~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 268 (292)
T cd06644 210 QIEPPHHELNP----M-RVLLKIAKSEP-----PTL-------SQPSKWSMEFRDFLKTALDKHPETRPSAAQLLE 268 (292)
T ss_pred cCCCCCccccH----H-HHHHHHhcCCC-----ccC-------CCCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 99999864221 1 11111110000 000 011223445789999999999999999999976
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=209.59 Aligned_cols=179 Identities=21% Similarity=0.180 Sum_probs=137.2
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|..++..+ +|+|++++++.+...+..++||||+++|+|..++.+. ..+++.....++.++++|+.|||. .+
T Consensus 42 ~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qi~~~l~~LH~----~~ 116 (318)
T cd05570 42 TMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRS-GRFDEPRARFYAAEIVLGLQFLHE----RG 116 (318)
T ss_pred HHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 34566666666 6999999999998888999999999999999998753 468999999999999999999994 48
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 117 ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf 196 (318)
T cd05570 117 IIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPF 196 (318)
T ss_pred eEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCC
Confidence 9999988430 011224899999999999888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH-----HHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM-----TDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~-----~~v~~ 652 (669)
.... ...+...+.. ... .. +......+.+++.+||..||++||++ .++++
T Consensus 197 ~~~~--~~~~~~~i~~---~~~------~~---------~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~ 251 (318)
T cd05570 197 EGDD--EDELFQSILE---DEV------RY---------PRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG 251 (318)
T ss_pred CCCC--HHHHHHHHHc---CCC------CC---------CCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence 6522 1111111111 000 00 11223457899999999999999999 77654
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=204.92 Aligned_cols=194 Identities=21% Similarity=0.252 Sum_probs=133.3
Q ss_pred hhhhhhcc---ccccccceecccccc-----ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 451 SECEVLRN---VRHRNLIKIISSCSN-----PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 451 ~e~~~l~~---l~h~niv~l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.|...+.. ++|||++++++.|.. ....++||||++ ++|.+++... ...+++..+..++.|++.||+|||.
T Consensus 50 ~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~ 128 (290)
T cd07862 50 REVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS 128 (290)
T ss_pred HHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45555444 479999999998742 345789999997 6999998753 2357889999999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||++
T Consensus 129 ----~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~ 204 (290)
T cd07862 129 ----HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR 204 (290)
T ss_pred ----CCeeeCCCCHHHEEEcCCCCEEEccccceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHc
Confidence 479999999531 0112347899999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHh-C--CCCccc-------cccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKES-L--PHRLSE-------VVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~-~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|+.||..... ...+...+... . +..+.. ...+..... ......+....+.+++.+|++.||++|||+
T Consensus 205 g~~~f~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~P~~R~s~ 281 (290)
T cd07862 205 RKPLFRGSSD-VDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQP--IEKFVTDIDELGKDLLLKCLTFNPAKRISA 281 (290)
T ss_pred CCCCcCCCCH-HHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCC--HHHHccCCCHHHHHHHHHHhccCchhcCCH
Confidence 9999875321 11111111110 0 001100 000000000 000011234567899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 282 ~~~l~ 286 (290)
T cd07862 282 YSALS 286 (290)
T ss_pred HHHhc
Confidence 99974
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=205.71 Aligned_cols=188 Identities=19% Similarity=0.350 Sum_probs=141.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---------CccCHHHHHHHHHhHHhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------~~l~~~~~~~i~~~i~~~l~~ 518 (669)
.+..|...++.++|+|++++++.+......++||||+++|+|.++++... ....+.....++.+++.|+.|
T Consensus 55 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 134 (288)
T cd05061 55 EFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAY 134 (288)
T ss_pred HHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35568888999999999999999988888999999999999999997421 234566778899999999999
Q ss_pred hhcCCCCCCeeecCCCCccc--------------c-------------cccccccccCccccccCCCcCccccchhhHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSVT--------------Q-------------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~~--------------~-------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
||. ++++|+|+|+... . ....++..|+|||...+..++.++|||||||+
T Consensus 135 lH~----~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~ 210 (288)
T cd05061 135 LNA----KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVV 210 (288)
T ss_pred HHh----CCCcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHH
Confidence 994 5799999985410 0 00123567999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+|||++ |..||..... ......+.. .... . .+......+.+++.+|++.+|++|||+.++
T Consensus 211 l~el~~~~~~p~~~~~~--~~~~~~~~~---~~~~-----~---------~~~~~~~~~~~li~~~l~~~p~~Rps~~~l 271 (288)
T cd05061 211 LWEITSLAEQPYQGLSN--EQVLKFVMD---GGYL-----D---------QPDNCPERVTDLMRMCWQFNPKMRPTFLEI 271 (288)
T ss_pred HHHHHhCCCCCCCCCCH--HHHHHHHHc---CCCC-----C---------CCCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 999999 7888865321 112111111 0000 0 011223568899999999999999999999
Q ss_pred HHHHHHhH
Q 040540 651 AAKLKKIK 658 (669)
Q Consensus 651 ~~~l~~~~ 658 (669)
++.+++..
T Consensus 272 l~~l~~~~ 279 (288)
T cd05061 272 VNLLKDDL 279 (288)
T ss_pred HHHHHhhc
Confidence 99988753
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-23 Score=205.68 Aligned_cols=186 Identities=17% Similarity=0.210 Sum_probs=138.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++.+......++|+||+++++|.++++.. ..+++.....++.|+++|++|||+ .+
T Consensus 52 ~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~~ 126 (267)
T cd06646 52 LIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVT-GPLSELQIAYVCRETLQGLAYLHS----KG 126 (267)
T ss_pred HHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 3556888999999999999999998888899999999999999999753 468899999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHHhCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
++|+|+++.. ......|+..|+|||.+. ...++.++|||||||++|||++|+
T Consensus 127 i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~ 206 (267)
T cd06646 127 KMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQ 206 (267)
T ss_pred ccccCCCHHHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCC
Confidence 9999988430 011234788999999874 344788999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
.|+........ ...+.... ...+... .....+..+.+++.+||..+|++||+++++++-
T Consensus 207 ~p~~~~~~~~~-~~~~~~~~-------~~~~~~~-------~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~ 265 (267)
T cd06646 207 PPMFDLHPMRA-LFLMSKSN-------FQPPKLK-------DKTKWSSTFHNFVKISLTKNPKKRPTAERLLTH 265 (267)
T ss_pred CCccccchhhh-heeeecCC-------CCCCCCc-------cccccCHHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence 99864321110 00000000 0001110 011234567899999999999999999999763
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=202.84 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=143.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++++++|+|++++++++......+++|||+++|+|.+++... ...+++.....++.++++|+.|||.
T Consensus 44 ~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---- 119 (256)
T cd08221 44 RDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHK---- 119 (256)
T ss_pred HHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 34667899999999999999999999888999999999999999999764 3468899999999999999999995
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
.+++|+|+++.. ......|++.|+|||+..+..++.++||||||+++|||++|+.
T Consensus 120 ~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~ 199 (256)
T cd08221 120 AGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKR 199 (256)
T ss_pred CCccccCCChHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCC
Confidence 379999988531 0112347899999999988888999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||.... ..+.+.......... ........+.+++.+||..+|++||++.|+++.
T Consensus 200 ~~~~~~-----~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~ 253 (256)
T cd08221 200 TFDATN-----PLNLVVKIVQGNYTP--------------VVSVYSSELISLVHSLLQQDPEKRPTADEVLDQ 253 (256)
T ss_pred CCCCCC-----HHHHHHHHHcCCCCC--------------CccccCHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence 986421 111111111111100 012234567899999999999999999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=224.03 Aligned_cols=191 Identities=24% Similarity=0.436 Sum_probs=151.3
Q ss_pred cccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHH
Q 040540 446 FRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIM 509 (669)
Q Consensus 446 ~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~ 509 (669)
.+.+..|+.+|..+ +|+|++.++|+|......++|+||+..|+|.++++..+ ..+...+.+.++
T Consensus 345 ~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa 424 (609)
T KOG0200|consen 345 KKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFA 424 (609)
T ss_pred HHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHH
Confidence 35677889998887 59999999999999888999999999999999998765 348888999999
Q ss_pred HhHHhhhhhhhcCCCCCCeeecCCCCc-----------------------cc-c--cccccc--cccCccccccCCCcCc
Q 040540 510 IDVGSALEYLRHGHSSAPIIHCEGEDS-----------------------VT-Q--TTTMAT--IGYMAPEYGSEGIVSA 561 (669)
Q Consensus 510 ~~i~~~l~~lh~~~~~~~i~h~d~~~~-----------------------~~-~--~~~~gt--~~y~aPE~~~~~~~~~ 561 (669)
.|||+|++||+ +.+++|||+..- .. . ....|+ ..|||||.+....|+.
T Consensus 425 ~QIa~GMe~L~----~~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~ 500 (609)
T KOG0200|consen 425 YQIANGMEYLA----SVPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTS 500 (609)
T ss_pred HHHHHHHHHHh----hCCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccc
Confidence 99999999997 457999997621 00 0 111122 3599999999999999
Q ss_pred cccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCC
Q 040540 562 KCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 562 ~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~ 640 (669)
|+|||||||+|||++| |..||.+... ...+.++++.+ .|...|..+..++.++|..||+.+
T Consensus 501 kSDVWSfGI~L~EifsLG~~PYp~~~~-~~~l~~~l~~G-----------------~r~~~P~~c~~eiY~iM~~CW~~~ 562 (609)
T KOG0200|consen 501 KSDVWSFGILLWEIFTLGGTPYPGIPP-TEELLEFLKEG-----------------NRMEQPEHCSDEIYDLMKSCWNAD 562 (609)
T ss_pred cchhhHHHHHHHHHhhCCCCCCCCCCc-HHHHHHHHhcC-----------------CCCCCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999 7889876321 11223333332 233345667788899999999999
Q ss_pred CCCCCCHHHHHHHHHHhH
Q 040540 641 PDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 641 P~~Rps~~~v~~~l~~~~ 658 (669)
|++||++.++++.++...
T Consensus 563 p~~RP~F~~~~~~~~~~l 580 (609)
T KOG0200|consen 563 PEDRPTFSECVEFFEKHL 580 (609)
T ss_pred cccCCCHHHHHHHHHHHH
Confidence 999999999999999853
|
|
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=186.04 Aligned_cols=198 Identities=22% Similarity=0.234 Sum_probs=144.9
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
-.+|+..++.++|+||+.+++.+...+...+|+|||+ .+|...++++...+.-.+..+++.++.+|++|+| .+.|
T Consensus 48 alREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~-tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H----~~~I 122 (318)
T KOG0659|consen 48 ALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMP-TDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCH----SKWI 122 (318)
T ss_pred HHHHHHHHHHccCcchhhhhhhccCCCceEEEEEecc-ccHHHHhcccccccCHHHHHHHHHHHHHHHHHHH----hhhh
Confidence 3479999999999999999999999999999999998 6999999998889999999999999999999999 4589
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|||+|+.. ..+..+-|..|.|||.+.+ ++|+..+|+||.|||+.||+-|.+-|
T Consensus 123 lHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~f 202 (318)
T KOG0659|consen 123 LHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFF 202 (318)
T ss_pred hcccCCccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCC
Confidence 999999641 1222356889999998877 55999999999999999999987544
Q ss_pred CcCCCCCccHHHHHHHhC----CCCccc---cccccccc---hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESL----PHRLSE---VVDTNLVR---EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~----~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.+ ..+..++ ..+-+.+ ++.+.+ .-|..... ..........+..++.+++.+++..||.+|.|+.|+++
T Consensus 203 pG-~sDidQL-~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~ 280 (318)
T KOG0659|consen 203 PG-DSDIDQL-SKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALK 280 (318)
T ss_pred CC-CchHHHH-HHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhc
Confidence 33 1222222 1111111 111111 10100000 00000011234556789999999999999999999986
Q ss_pred H
Q 040540 653 K 653 (669)
Q Consensus 653 ~ 653 (669)
+
T Consensus 281 ~ 281 (318)
T KOG0659|consen 281 H 281 (318)
T ss_pred c
Confidence 4
|
|
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=205.78 Aligned_cols=184 Identities=18% Similarity=0.264 Sum_probs=141.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++.+...+..++||||+++++|.+++.. ..+++.+...++.++++|++|||. .
T Consensus 64 ~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~----~ 137 (292)
T cd06658 64 ELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLSVLRALSYLHN----Q 137 (292)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3466788899999999999999999988999999999999999999864 347888999999999999999994 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......|+..|+|||+..+..++.++|||||||++|||++|+.|
T Consensus 138 ~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p 217 (292)
T cd06658 138 GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPP 217 (292)
T ss_pred CEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 79999998431 01123478899999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
|.... .......+....+. .+.. .......+.+++.+||..||++|||++|+++.
T Consensus 218 ~~~~~--~~~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~ 272 (292)
T cd06658 218 YFNEP--PLQAMRRIRDNLPP--------RVKD-------SHKVSSVLRGFLDLMLVREPSQRATAQELLQH 272 (292)
T ss_pred CCCCC--HHHHHHHHHhcCCC--------cccc-------ccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 86421 11111111111111 1110 11223457789999999999999999999863
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=213.72 Aligned_cols=199 Identities=19% Similarity=0.180 Sum_probs=141.2
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
..+|+.++..++|+|++++++.+......+++|||+. +++.+++. ....+++..+..|+.|++.||.|||. .+|
T Consensus 133 ~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~-~~~~l~~~~~~~i~~ql~~aL~~LH~----~gi 206 (392)
T PHA03207 133 PGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-CDLFTYVD-RSGPLPLEQAITIQRRLLEALAYLHG----RGI 206 (392)
T ss_pred HHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-CCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHH----CCc
Confidence 3578999999999999999999988888999999996 68999985 34568999999999999999999995 479
Q ss_pred eecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 529 IHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 529 ~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|||+|+.. ......||+.|+|||++....++.++|||||||++|||++|+.|
T Consensus 207 vHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~p 286 (392)
T PHA03207 207 IHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVT 286 (392)
T ss_pred cccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCC
Confidence 999998430 00123589999999999988899999999999999999999999
Q ss_pred CCcCCCCC--ccHHHHHHHhC--CCCccccccccc----------cchhhhhh---hhHHHHHHHHHHHhhcccCCCCCC
Q 040540 582 TDEMFTGE--MSLRRWVKESL--PHRLSEVVDTNL----------VREEQAFS---AKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 582 ~~~~~~~~--~~l~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|....... ..+...++..- +.....-....+ .......+ .......++.+++.+|+..||++|
T Consensus 287 f~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R 366 (392)
T PHA03207 287 LFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFR 366 (392)
T ss_pred CCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhC
Confidence 86532211 11111111100 000000000000 00000000 001123467789999999999999
Q ss_pred CCHHHHHHH
Q 040540 645 MHMTDAAAK 653 (669)
Q Consensus 645 ps~~~v~~~ 653 (669)
||+.|++..
T Consensus 367 psa~e~l~~ 375 (392)
T PHA03207 367 PSAQDILSL 375 (392)
T ss_pred CCHHHHhhC
Confidence 999999864
|
|
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-23 Score=203.99 Aligned_cols=183 Identities=20% Similarity=0.255 Sum_probs=141.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++......++++||+++++|.+++... ..+++.....++.++++|+.|||. .
T Consensus 49 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~----~ 123 (263)
T cd06625 49 NALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAY-GALTETVTRKYTRQILEGVEYLHS----N 123 (263)
T ss_pred HHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 35667899999999999999999999988999999999999999999753 457888889999999999999995 4
Q ss_pred CeeecCCCCcc---------------------c----c---cccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV---------------------T----Q---TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------~----~---~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. . . ....|+..|+|||+..+..++.++||||+||++|||++|
T Consensus 124 ~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g 203 (263)
T cd06625 124 MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTE 203 (263)
T ss_pred CeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhC
Confidence 79999988430 0 0 112367789999999988899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ........ ... .. +.+ +......+.+++.+||..+|.+||++.|+++
T Consensus 204 ~~p~~~~~~--~~~~~~~~--~~~-~~----~~~---------~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 259 (263)
T cd06625 204 KPPWAEFEA--MAAIFKIA--TQP-TN----PQL---------PSHVSPDARNFLRRTFVENAKKRPSAEELLR 259 (263)
T ss_pred CCCccccch--HHHHHHHh--ccC-CC----CCC---------CccCCHHHHHHHHHHhhcCcccCCCHHHHhh
Confidence 999865311 11111111 000 00 000 1223445789999999999999999999976
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-23 Score=207.98 Aligned_cols=176 Identities=20% Similarity=0.268 Sum_probs=139.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+....|-.++....++.+|+++.++++.+..||||||.|||++..+|... ..+++....-++.+.+-|++-+|+.
T Consensus 186 ~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~~~-~~L~e~~arfYiaE~vlAI~~iH~~---- 260 (550)
T KOG0605|consen 186 EHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLMRK-DTLTEDWARFYIAETVLAIESIHQL---- 260 (550)
T ss_pred HHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHHhc-CcCchHHHHHHHHHHHHHHHHHHHc----
Confidence 34567888888899999999999999999999999999999999999864 4577777777888899999999954
Q ss_pred CeeecCCCCc----------------------------------------------------------------------
Q 040540 527 PIIHCEGEDS---------------------------------------------------------------------- 536 (669)
Q Consensus 527 ~i~h~d~~~~---------------------------------------------------------------------- 536 (669)
++||||+|+.
T Consensus 261 gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~n 340 (550)
T KOG0605|consen 261 GYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRN 340 (550)
T ss_pred CcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhh
Confidence 8999999831
Q ss_pred --ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCc--cHHHHHHHhCCCCccccccccc
Q 040540 537 --VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM--SLRRWVKESLPHRLSEVVDTNL 612 (669)
Q Consensus 537 --~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~ 612 (669)
....+.+|||-|||||++.+..|+..+|+||+|||+|||+.|-+||.+...... .+..|....
T Consensus 341 rr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l------------- 407 (550)
T KOG0605|consen 341 RRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETL------------- 407 (550)
T ss_pred hhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhc-------------
Confidence 012234699999999999999999999999999999999999999976332221 123332111
Q ss_pred cchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 613 VREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
.+|...+...++.++|.+|+. ||++|-.
T Consensus 408 -----~fP~~~~~s~eA~DLI~rll~-d~~~RLG 435 (550)
T KOG0605|consen 408 -----KFPEEVDLSDEAKDLITRLLC-DPENRLG 435 (550)
T ss_pred -----cCCCcCcccHHHHHHHHHHhc-CHHHhcC
Confidence 111222334678999999999 9999975
|
|
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=208.66 Aligned_cols=173 Identities=20% Similarity=0.195 Sum_probs=131.3
Q ss_pred hhhhhc-cccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeee
Q 040540 452 ECEVLR-NVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH 530 (669)
Q Consensus 452 e~~~l~-~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h 530 (669)
|...+. ..+|||++++++.+......++||||+++|+|.+++... ..+++.....++.|++.|+.|||. .+|+|
T Consensus 45 e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~----~~ivH 119 (316)
T cd05592 45 ERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQSS-GRFDEARARFYAAEIICGLQFLHK----KGIIY 119 (316)
T ss_pred HHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CCEEe
Confidence 444444 348999999999998888999999999999999999754 457888888999999999999995 48999
Q ss_pred cCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 531 CEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 531 ~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 120 ~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~ 199 (316)
T cd05592 120 RDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE 199 (316)
T ss_pred CCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC
Confidence 9998420 011235899999999998888999999999999999999999999753
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
.. ..+..-+....+ .+ +......+.+++.+||+.||++||++.+
T Consensus 200 ~~--~~~~~~i~~~~~---------~~---------~~~~~~~~~~ll~~~l~~~P~~R~~~~~ 243 (316)
T cd05592 200 DE--DELFDSILNDRP---------HF---------PRWISKEAKDCLSKLFERDPTKRLGVDG 243 (316)
T ss_pred CH--HHHHHHHHcCCC---------CC---------CCCCCHHHHHHHHHHccCCHHHcCCChH
Confidence 21 111111111100 00 1122345678999999999999998753
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-23 Score=226.95 Aligned_cols=192 Identities=18% Similarity=0.256 Sum_probs=144.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC----------CCccCHHHHHHHHHhHHhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH----------NYFLDILERLNIMIDVGSAL 516 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~----------~~~l~~~~~~~i~~~i~~~l 516 (669)
+.+..|+.++..++|||++++++.+...+..+++|||+++|+|.+++... ....++....+++.++++|+
T Consensus 47 ~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL 126 (932)
T PRK13184 47 KRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATI 126 (932)
T ss_pred HHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999888999999999999999998631 12356677889999999999
Q ss_pred hhhhcCCCCCCeeecCCCCccc------------------c-------------------------cccccccccCcccc
Q 040540 517 EYLRHGHSSAPIIHCEGEDSVT------------------Q-------------------------TTTMATIGYMAPEY 553 (669)
Q Consensus 517 ~~lh~~~~~~~i~h~d~~~~~~------------------~-------------------------~~~~gt~~y~aPE~ 553 (669)
+|||. .+|+|||+|+... . ...+||+.|||||+
T Consensus 127 ~yLHs----~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~ 202 (932)
T PRK13184 127 EYVHS----KGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPER 202 (932)
T ss_pred HHHHH----CCccccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHH
Confidence 99995 4799999995310 0 01258999999999
Q ss_pred ccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHH
Q 040540 554 GSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLA 633 (669)
Q Consensus 554 ~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 633 (669)
+.+..++.++|||||||++|||+||+.||........... ... .++.- .....+.+..+.+++
T Consensus 203 l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~----~~i-------~~P~~------~~p~~~iP~~L~~LI 265 (932)
T PRK13184 203 LLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYR----DVI-------LSPIE------VAPYREIPPFLSQIA 265 (932)
T ss_pred hcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhh----hhc-------cChhh------ccccccCCHHHHHHH
Confidence 9988899999999999999999999999865221111000 000 00000 000123345578899
Q ss_pred hhcccCCCCCCC-CHHHHHHHHHHhHH
Q 040540 634 LDCCMESPDKRM-HMTDAAAKLKKIKV 659 (669)
Q Consensus 634 ~~c~~~~P~~Rp-s~~~v~~~l~~~~~ 659 (669)
.+|++.||++|| +++++.+.|+....
T Consensus 266 ~rcL~~DP~kR~ss~eeLl~~Le~~lq 292 (932)
T PRK13184 266 MKALAVDPAERYSSVQELKQDLEPHLQ 292 (932)
T ss_pred HHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 999999999996 67888888887654
|
|
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=208.87 Aligned_cols=177 Identities=19% Similarity=0.187 Sum_probs=134.5
Q ss_pred chhhhhhcc-ccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 450 DSECEVLRN-VRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 450 ~~e~~~l~~-l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
..|...+.. .+|++++++++.+...+..++||||+++|+|.+++... ..+++.....++.++++|++|||. .++
T Consensus 43 ~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~~i 117 (316)
T cd05620 43 MVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDK-GRFDLYRATFYAAEIVCGLQFLHS----KGI 117 (316)
T ss_pred HHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CCe
Confidence 345555543 48999999999999889999999999999999998753 457888899999999999999994 489
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||++|+.||.
T Consensus 118 vHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~ 197 (316)
T cd05620 118 IYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFH 197 (316)
T ss_pred EecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCC
Confidence 999998430 0112348999999999998889999999999999999999999996
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH-HHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT-DAA 651 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~-~v~ 651 (669)
... ...+.+.+....+ .+ +.....++.+++.+|+..||++||++. ++.
T Consensus 198 ~~~--~~~~~~~~~~~~~---------~~---------~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~ 246 (316)
T cd05620 198 GDD--EDELFESIRVDTP---------HY---------PRWITKESKDILEKLFERDPTRRLGVVGNIR 246 (316)
T ss_pred CCC--HHHHHHHHHhCCC---------CC---------CCCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence 532 1112211111110 00 111234567999999999999999974 554
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-22 Score=200.22 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=141.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..++.++|+|++++++.+......++||||+++++|.+++... ...+++.....++.++++|++|||.
T Consensus 44 ~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~---- 119 (256)
T cd08220 44 LAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHT---- 119 (256)
T ss_pred HHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 34667899999999999999999888888889999999999999999764 3458899999999999999999994
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
.+++|+|+++.. ......|+..|+|||...+..++.++|||||||++|||++|+.
T Consensus 120 ~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~ 199 (256)
T cd08220 120 KLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKR 199 (256)
T ss_pred CCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCC
Confidence 489999988431 0011246789999999988888999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||..... ............... +......+.+++.+||..+|++|||+.|+++
T Consensus 200 ~~~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~ 252 (256)
T cd08220 200 AFEAANL--PALVLKIMSGTFAPI-----------------SDRYSPDLRQLILSMLNLDPSKRPQLSQIMA 252 (256)
T ss_pred CcccCch--HHHHHHHHhcCCCCC-----------------CCCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 9865321 112211111110000 1123445789999999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-23 Score=207.73 Aligned_cols=182 Identities=19% Similarity=0.236 Sum_probs=140.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++.+......++|+||+++++|.+++.. ..+++.++..++.++++|++|||. .+
T Consensus 62 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~l~~al~~LH~----~~ 135 (296)
T cd06655 62 LIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTE--TCMDEAQIAAVCRECLQALEFLHA----NQ 135 (296)
T ss_pred HHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 455788899999999999999999888899999999999999999864 358999999999999999999994 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......|+..|+|||...+..++.++|||||||++|||++|+.||
T Consensus 136 i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf 215 (296)
T cd06655 136 VIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPY 215 (296)
T ss_pred cccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 9999988430 011224788999999998888999999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
....... .+. ........ .+ ..+......+.+++.+||..||++||++.+++.
T Consensus 216 ~~~~~~~-~~~-~~~~~~~~--------~~-------~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~ 268 (296)
T cd06655 216 LNENPLR-ALY-LIATNGTP--------EL-------QNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ 268 (296)
T ss_pred CCCCHHH-HHH-HHHhcCCc--------cc-------CCcccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 6532111 111 11110000 00 011223446788999999999999999999975
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-23 Score=217.42 Aligned_cols=188 Identities=21% Similarity=0.354 Sum_probs=152.4
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..++..|.-.|.+++|+|++++++.|.... ..||.+|||.|.|.++++.++..+.-...+++..|||+|+.|||.
T Consensus 742 s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~---- 816 (1177)
T KOG1025|consen 742 SIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEE---- 816 (1177)
T ss_pred hHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh----
Confidence 345677888999999999999999998766 779999999999999999988889999999999999999999984
Q ss_pred CCeeecCCCCc-------------------------ccccccc--cccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 526 APIIHCEGEDS-------------------------VTQTTTM--ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 526 ~~i~h~d~~~~-------------------------~~~~~~~--gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
.+++|||+..- ....... -.+.|||=|.+....|+.++|||||||++||++|
T Consensus 817 qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTF 896 (1177)
T KOG1025|consen 817 QRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTF 896 (1177)
T ss_pred cchhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhc
Confidence 47999997621 0111111 2356888888888999999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|..||+....+++ +.+...+.|.+.+..+..++..++.+||..|++.||++++......+.
T Consensus 897 Ga~Py~gi~~~eI-------------------~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ 957 (1177)
T KOG1025|consen 897 GAKPYDGIPAEEI-------------------PDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRM 957 (1177)
T ss_pred CCCccCCCCHHHh-------------------hHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHH
Confidence 8899987543221 112223344556778889999999999999999999999998887664
|
|
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-22 Score=208.03 Aligned_cols=190 Identities=23% Similarity=0.385 Sum_probs=140.8
Q ss_pred cCchhhhhhccc-cccccceeccccccc-cccceeeccCCCCChHHhhhcCC----------------------------
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNP-DFKALVLEFMPNGSLEKWLYSHN---------------------------- 497 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~~---------------------------- 497 (669)
.+..|+..+..+ +|+|+++++++|... ...+++|||+++|+|.++++...
T Consensus 56 ~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (343)
T cd05103 56 ALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLK 135 (343)
T ss_pred HHHHHHHHHHhccCCccHhhhcceeecCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhh
Confidence 456788899888 689999999988654 45689999999999999986421
Q ss_pred --------------------------------------CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCccc-
Q 040540 498 --------------------------------------YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVT- 538 (669)
Q Consensus 498 --------------------------------------~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~~- 538 (669)
..+++.....++.++++|++|||. .+++|+|+|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~----~~i~H~dikp~Nil 211 (343)
T cd05103 136 RRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLAS----RKCIHRDLAARNIL 211 (343)
T ss_pred hhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHh----CCeecCCCccCeEE
Confidence 235777888999999999999994 4899999995410
Q ss_pred --------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCcc
Q 040540 539 --------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMS 591 (669)
Q Consensus 539 --------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~ 591 (669)
.....++..|+|||++.+..++.++|||||||++|||++ |..||....... .
T Consensus 212 ~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-~ 290 (343)
T cd05103 212 LSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-E 290 (343)
T ss_pred EcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccH-H
Confidence 001123567999999988889999999999999999997 898986532211 1
Q ss_pred HHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 592 LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
+...+........ +......+.+++.+||+.+|++||++.||++.|+.+.+
T Consensus 291 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~ 341 (343)
T cd05103 291 FCRRLKEGTRMRA-----------------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 341 (343)
T ss_pred HHHHHhccCCCCC-----------------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 1111111110000 11122357899999999999999999999999998765
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-22 Score=201.59 Aligned_cols=187 Identities=24% Similarity=0.402 Sum_probs=144.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+..++.++|+|++++++.+......+++|||+++++|.+++.... ..+++.....++.+++.|+.|||.
T Consensus 46 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~---- 121 (261)
T cd05034 46 EAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLES---- 121 (261)
T ss_pred HHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 356678999999999999999999988888999999999999999997643 468999999999999999999994
Q ss_pred CCeeecCCCCcccc--------------------------cccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSVTQ--------------------------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~~~--------------------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|+|+++.... ....++..|+|||...+..++.++|||||||++||++| |
T Consensus 122 ~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g 201 (261)
T cd05034 122 RNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYG 201 (261)
T ss_pred CCcccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCC
Confidence 47999999854100 00113457999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
+.||.... .....+........ +.+.+.+..+.+++.+|++.+|++||+++++.+.|+.
T Consensus 202 ~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~ 260 (261)
T cd05034 202 RVPYPGMT--NREVLEQVERGYRM-----------------PRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED 260 (261)
T ss_pred CCCCCCCC--HHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence 99986532 11122222111110 0011223467899999999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-22 Score=199.66 Aligned_cols=186 Identities=25% Similarity=0.432 Sum_probs=141.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+..+..++|+|++++++.+... ..+++|||+++++|.++++... ..+++..+.+++.++++|+.|+|.
T Consensus 44 ~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~---- 118 (254)
T cd05083 44 QAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLES---- 118 (254)
T ss_pred HHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 3566789999999999999999988654 4689999999999999997543 357899999999999999999994
Q ss_pred CCeeecCCCCccc----------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCC
Q 040540 526 APIIHCEGEDSVT----------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPT 582 (669)
Q Consensus 526 ~~i~h~d~~~~~~----------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~ 582 (669)
.+++|+|+++... ......+..|+|||++.+..++.++|||||||++|||++ |+.||
T Consensus 119 ~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~ 198 (254)
T cd05083 119 KKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPY 198 (254)
T ss_pred CCeeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCC
Confidence 5899999995410 011123457999999988889999999999999999998 99998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
..... ............. ..+...+..+.+++.+||+.+|++||++.++++.|++
T Consensus 199 ~~~~~--~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 253 (254)
T cd05083 199 PKMSL--KEVKECVEKGYRM-----------------EPPEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK 253 (254)
T ss_pred ccCCH--HHHHHHHhCCCCC-----------------CCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence 65321 1112221111100 0012234567899999999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=201.65 Aligned_cols=195 Identities=24% Similarity=0.261 Sum_probs=144.4
Q ss_pred Cchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+|+.+++++.||||+++.+..... ..+|+|+|||+. +|.-++...+..++..+...|+.|++.||+|+|. .
T Consensus 163 ~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~----~ 237 (560)
T KOG0600|consen 163 AIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHS----R 237 (560)
T ss_pred HHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhh----c
Confidence 45799999999999999999987765 678999999985 9999998777789999999999999999999994 5
Q ss_pred CeeecCCCCc--------------------------ccccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDS--------------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~--------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|.+ ...+..+-|..|.|||.+.+ ..|+.++|+||.|||+.||++|+
T Consensus 238 gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gk 317 (560)
T KOG0600|consen 238 GVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGK 317 (560)
T ss_pred CeeeccccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCC
Confidence 8999999943 12344567999999999887 45999999999999999999999
Q ss_pred CCCCcCCCCCccH------------HHHHHHhCCCCccccccccccchhhhh-hhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 580 RPTDEMFTGEMSL------------RRWVKESLPHRLSEVVDTNLVREEQAF-SAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 580 ~p~~~~~~~~~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
+.+.+... ..++ ..|....+|. ...+.+...-. .+. +.....+..+.+++..++..||++|.|
T Consensus 318 PI~~G~tE-veQl~kIfklcGSP~e~~W~~~kLP~--~~~~kp~~~y~-r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~t 393 (560)
T KOG0600|consen 318 PILQGRTE-VEQLHKIFKLCGSPTEDYWPVSKLPH--ATIFKPQQPYK-RRLRETFKDFPASALDLLEKLLSLDPDKRGT 393 (560)
T ss_pred CCcCCccH-HHHHHHHHHHhCCCChhccccccCCc--ccccCCCCccc-chHHHHhccCCHHHHHHHHHHhccCcccccc
Confidence 98876321 1111 1122112221 01111100000 000 012234456789999999999999999
Q ss_pred HHHHHH
Q 040540 647 MTDAAA 652 (669)
Q Consensus 647 ~~~v~~ 652 (669)
+.++++
T Consensus 394 A~~aL~ 399 (560)
T KOG0600|consen 394 ASSALQ 399 (560)
T ss_pred HHHHhc
Confidence 999875
|
|
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-22 Score=209.89 Aligned_cols=179 Identities=20% Similarity=0.160 Sum_probs=136.0
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|..++... +||+++++++++......++||||+++|+|..++... ..+++.....++.++++|++|||. .+
T Consensus 42 ~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~~ 116 (321)
T cd05591 42 TMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRS-RKFDEPRSRFYAAEVTLALMFLHR----HG 116 (321)
T ss_pred HHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 44566666644 7999999999999888999999999999999998754 458888999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 117 ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf 196 (321)
T cd05591 117 VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPF 196 (321)
T ss_pred eeccCCCHHHeEECCCCCEEEeecccceecccCCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCC
Confidence 9999998430 011234899999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-------CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-------HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-------s~~~v~~ 652 (669)
..... ..+.+.+.. .. ... +......+.+++.+|++.||++|| ++.++++
T Consensus 197 ~~~~~--~~~~~~i~~---~~---~~~------------p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~ 253 (321)
T cd05591 197 EADNE--DDLFESILH---DD---VLY------------PVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQ 253 (321)
T ss_pred CCCCH--HHHHHHHHc---CC---CCC------------CCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhc
Confidence 75321 111111111 00 000 111234568999999999999999 6666653
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=203.28 Aligned_cols=182 Identities=18% Similarity=0.232 Sum_probs=142.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..++.+.|++++++++.+......++||||+++|+|.+++.. ..+++.+...++.++++|++|+|+ .
T Consensus 47 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~--~~l~~~~~~~~~~~l~~~l~~lh~----~ 120 (277)
T cd06640 47 EDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRA--GPFDEFQIATMLKEILKGLDYLHS----E 120 (277)
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 3566788899999999999999999988999999999999999999974 357888889999999999999994 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......++..|+|||+..+..++.++|||||||++|||+||+.|
T Consensus 121 ~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p 200 (277)
T cd06640 121 KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP 200 (277)
T ss_pred CccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCC
Confidence 79999988431 01112467889999999888889999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
+....... ..... +.. ..+. .....+..+.+++.+||+.+|++||++.|+++.
T Consensus 201 ~~~~~~~~--~~~~~----~~~----~~~~---------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06640 201 NSDMHPMR--VLFLI----PKN----NPPT---------LTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH 253 (277)
T ss_pred CCCcChHh--Hhhhh----hcC----CCCC---------CchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence 87532211 00000 000 0011 123455678899999999999999999999764
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=201.51 Aligned_cols=182 Identities=21% Similarity=0.272 Sum_probs=139.4
Q ss_pred cCchhhhhhccccccccceecccccc-ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|+..++.++|+|++++++.+.. ....+++|||+++++|.++++.. ...+++.+..+++.+++.|++|+|.
T Consensus 45 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~---- 120 (257)
T cd08223 45 AAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHE---- 120 (257)
T ss_pred HHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 45678889999999999999887654 44568999999999999999763 3458999999999999999999995
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
.+++|+|+++.. ......|++.|+|||+..+..++.++|||||||+++||++|+.
T Consensus 121 ~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~ 200 (257)
T cd08223 121 KHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKH 200 (257)
T ss_pred CCeeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCC
Confidence 479999998541 0112247889999999988889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... ............. +. .+......+.+++.+|++.+|++||++.++++
T Consensus 201 ~~~~~~-----~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 253 (257)
T cd08223 201 AFNAKD-----MNSLVYRIIEGKL-----PP---------MPKDYSPELGELIATMLSKRPEKRPSVKSILR 253 (257)
T ss_pred CCCCCC-----HHHHHHHHHhcCC-----CC---------CccccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 986422 1111111100000 00 01233456789999999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=213.12 Aligned_cols=200 Identities=17% Similarity=0.173 Sum_probs=142.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++++++|+||+++++++......++||||+. ++|.+++......+++.++..|+.|+++||.|||. .+
T Consensus 206 ~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~----~g 280 (461)
T PHA03211 206 SSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHG----EG 280 (461)
T ss_pred CHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 34579999999999999999999988888899999995 79999987655679999999999999999999994 47
Q ss_pred eeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 528 IIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 528 i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
|+|||+|+.. ......||..|||||++.+..++.++|||||||++|||++|..
T Consensus 281 IvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~ 360 (461)
T PHA03211 281 IIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTA 360 (461)
T ss_pred EEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCC
Confidence 9999999430 0112348999999999998889999999999999999999987
Q ss_pred CCCcCCCC------CccHHHHHHHhCC--CCccccccccccc-----------hhhhhhhhH---HHHHHHHHHHhhccc
Q 040540 581 PTDEMFTG------EMSLRRWVKESLP--HRLSEVVDTNLVR-----------EEQAFSAKM---DCLLSIMDLALDCCM 638 (669)
Q Consensus 581 p~~~~~~~------~~~l~~~~~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~~---~~~~~~~~l~~~c~~ 638 (669)
|+...... ...+.+.++.... ..........+.. .....+.+. .....+.+++.+|++
T Consensus 361 ~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~ 440 (461)
T PHA03211 361 SLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALT 440 (461)
T ss_pred CcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcc
Confidence 65432111 0112222221100 0000000000000 000000011 223467899999999
Q ss_pred CCCCCCCCHHHHHH
Q 040540 639 ESPDKRMHMTDAAA 652 (669)
Q Consensus 639 ~~P~~Rps~~~v~~ 652 (669)
.||.+|||+.|+++
T Consensus 441 ~DP~~RPsa~elL~ 454 (461)
T PHA03211 441 FDGARRPSAAELLR 454 (461)
T ss_pred cChhhCcCHHHHhh
Confidence 99999999999986
|
|
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-22 Score=200.76 Aligned_cols=190 Identities=21% Similarity=0.218 Sum_probs=146.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++.+......++++||+++++|.+++......++......++.++++|++|+|. ..
T Consensus 44 ~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~ 120 (265)
T cd06605 44 KQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHE---KH 120 (265)
T ss_pred HHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcC---CC
Confidence 346678888999999999999999988899999999999999999998654678888889999999999999994 25
Q ss_pred CeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 527 PIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 527 ~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+++|+|+++.. ......|+..|+|||+..+..++.++||||||+++|||++|+.||.
T Consensus 121 ~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~ 200 (265)
T cd06605 121 KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYP 200 (265)
T ss_pred CeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 89999988431 0011347889999999988889999999999999999999999987
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
..........+.++....... +.+. .......+.+++.+||..+|++||++.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 256 (265)
T cd06605 201 PENDPPDGIFELLQYIVNEPP-----PRLP--------SGKFSPDFQDFVNLCLIKDPRERPSYKELLE 256 (265)
T ss_pred ccccccccHHHHHHHHhcCCC-----CCCC--------hhhcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence 543222222222222211100 0010 1114456789999999999999999999875
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=216.40 Aligned_cols=197 Identities=17% Similarity=0.185 Sum_probs=134.5
Q ss_pred chhhhhhccccccccceecccccc--------ccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhh
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSN--------PDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~--------~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
..|+.+++.++|+|++++++++.. ..+.++||||++ +++.+++.. ....+++.....++.|+++||+|
T Consensus 107 ~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~y 185 (440)
T PTZ00036 107 NRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIP-QTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAY 185 (440)
T ss_pred HHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCC-ccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 358899999999999998776532 124568999998 578777653 34568888999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLL 572 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil 572 (669)
||. .+|+|||+|+.. ......||+.|+|||++.+ ..|+.++|||||||++
T Consensus 186 LH~----~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil 261 (440)
T PTZ00036 186 IHS----KFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCII 261 (440)
T ss_pred HHH----CCEecCCcCHHHEEEcCCCCceeeeccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHH
Confidence 995 479999999430 0112357899999998765 4689999999999999
Q ss_pred HHHHhCCCCCCcCCCCCccHHHHHHHhC-CC---------CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 573 METFTRKRPTDEMFTGEMSLRRWVKESL-PH---------RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~~~~l~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||+||+.||..... ...+...+...- +. ...++..+.+.....+...+...+.++.+++.+||+.||.
T Consensus 262 ~elltG~~pf~~~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~ 340 (440)
T PTZ00036 262 AEMILGYPIFSGQSS-VDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPL 340 (440)
T ss_pred HHHHhCCCCCCCCCh-HHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChh
Confidence 999999999965321 111111111100 00 0000000111110000011223446788999999999999
Q ss_pred CCCCHHHHHH
Q 040540 643 KRMHMTDAAA 652 (669)
Q Consensus 643 ~Rps~~~v~~ 652 (669)
+|||+.|+++
T Consensus 341 ~R~ta~e~l~ 350 (440)
T PTZ00036 341 KRLNPIEALA 350 (440)
T ss_pred HCcCHHHHhC
Confidence 9999999974
|
|
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=209.44 Aligned_cols=182 Identities=18% Similarity=0.181 Sum_probs=136.0
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++.++ +|++++.+++++......++||||+++|+|.+++... ..+++..+..++.++++|++|||. .
T Consensus 41 ~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qi~~al~~lH~----~ 115 (327)
T cd05617 41 WVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQ-RKLPEEHARFYAAEICIALNFLHE----R 115 (327)
T ss_pred HHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 345677777776 6999999999998888899999999999999988743 458999999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.|
T Consensus 116 ~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~p 195 (327)
T cd05617 116 GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSP 195 (327)
T ss_pred CeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCC
Confidence 79999998430 01123589999999999888899999999999999999999999
Q ss_pred CCcCCCC-CccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 582 TDEMFTG-EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 582 ~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
|...... ......++.......... .+......+.+++.+|++.||++||++.
T Consensus 196 f~~~~~~~~~~~~~~~~~~~~~~~~~--------------~p~~~~~~~~~li~~~L~~dP~~R~~~~ 249 (327)
T cd05617 196 FDIITDNPDMNTEDYLFQVILEKPIR--------------IPRFLSVKASHVLKGFLNKDPKERLGCQ 249 (327)
T ss_pred CCccCCCcccccHHHHHHHHHhCCCC--------------CCCCCCHHHHHHHHHHhccCHHHcCCCC
Confidence 9643211 111111211111100000 0112234567999999999999999853
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-22 Score=203.26 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=139.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++.+......++++||++ +++.+++......+++.....++.|+++|+.|||. .+
T Consensus 45 ~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~----~~ 119 (284)
T cd07839 45 SALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCD-QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHS----HN 119 (284)
T ss_pred chhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45678999999999999999999998889999999997 58888887655678999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......++..|+|||++.+. .++.++|||||||++|||+||+.|
T Consensus 120 i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p 199 (284)
T cd07839 120 VLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP 199 (284)
T ss_pred EecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCC
Confidence 9999988431 00122467889999987664 478999999999999999999998
Q ss_pred CCcCCCCCccHHHHHHHhCCC-C------cccccc----ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPH-R------LSEVVD----TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~-~------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+.........+. ...+.... . .....+ +..................+.+++.+|++.||++|||++++
T Consensus 200 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~i 278 (284)
T cd07839 200 LFPGNDVDDQLK-RIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEA 278 (284)
T ss_pred CcCCCCHHHHHH-HHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHH
Confidence 654222111111 11110000 0 000000 00000000000111234677899999999999999999998
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
++
T Consensus 279 l~ 280 (284)
T cd07839 279 LQ 280 (284)
T ss_pred hc
Confidence 75
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-22 Score=198.75 Aligned_cols=187 Identities=20% Similarity=0.292 Sum_probs=141.8
Q ss_pred cCchhhhhhcc-ccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRN-VRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~-l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+..+.+ ++|+|++++++.+......+++|||+++++|.+++.. ....+++.....++.+++.|+.|||+.
T Consensus 54 ~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~- 132 (269)
T cd08528 54 DIVSEVTIIKEQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE- 132 (269)
T ss_pred HHHHHHHHHhhcCCCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC-
Confidence 45567776754 7899999999999999999999999999999998743 345688889999999999999999942
Q ss_pred CCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 524 SSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 524 ~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+++|+|+++.. ......|+..|+|||+..+..++.++||||||+++|||++|+
T Consensus 133 --~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~ 210 (269)
T cd08528 133 --KRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQ 210 (269)
T ss_pred --CceeecCCCHHHEEECCCCcEEEecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCC
Confidence 479999988420 111234788999999998888999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
.||.... .......+... ... + .. .......+.+++.+||+.||++||++.||..+++
T Consensus 211 ~p~~~~~--~~~~~~~~~~~---~~~----~-~~--------~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~ 268 (269)
T cd08528 211 PPFYSTN--MLSLATKIVEA---VYE----P-LP--------EGMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS 268 (269)
T ss_pred CcccccC--HHHHHHHHhhc---cCC----c-CC--------cccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence 9986421 11111111111 000 0 00 0122346789999999999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-22 Score=201.76 Aligned_cols=181 Identities=20% Similarity=0.217 Sum_probs=141.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.+++.++|+|++++++.+..+...++|+||+++++|.+++... .+++.....++.+++.|+.|||. .+
T Consensus 45 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lh~----~~ 118 (274)
T cd06609 45 DIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPG--KLDETYIAFILREVLLGLEYLHE----EG 118 (274)
T ss_pred HHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4567888999999999999999998888899999999999999999753 68999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......|+..|+|||+..+..++.++|||||||++|||+||+.||
T Consensus 119 i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~ 198 (274)
T cd06609 119 KIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPL 198 (274)
T ss_pred cccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence 9999988430 011234788899999998888999999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...... .....+....+ +.+.. ......+.+++.+||..+|++||+++++++
T Consensus 199 ~~~~~~--~~~~~~~~~~~--------~~~~~--------~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~ 250 (274)
T cd06609 199 SDLHPM--RVLFLIPKNNP--------PSLEG--------NKFSKPFKDFVSLCLNKDPKERPSAKELLK 250 (274)
T ss_pred ccCchH--HHHHHhhhcCC--------CCCcc--------cccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence 653211 11111111111 11100 013345789999999999999999999976
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-22 Score=207.31 Aligned_cols=209 Identities=19% Similarity=0.236 Sum_probs=146.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|..++..++|+|++++++++......++|+||++++++.+++... ...+++.....++.|++.||+|||.
T Consensus 44 ~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---- 119 (328)
T cd08226 44 KALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQ---- 119 (328)
T ss_pred HHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 45667888888899999999999999988999999999999999999753 2357888888999999999999994
Q ss_pred CCeeecCCCCcccc------------------------c--------ccccccccCccccccCC--CcCccccchhhHHH
Q 040540 526 APIIHCEGEDSVTQ------------------------T--------TTMATIGYMAPEYGSEG--IVSAKCDVYSYGVL 571 (669)
Q Consensus 526 ~~i~h~d~~~~~~~------------------------~--------~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gvi 571 (669)
.+++|||+|+.... . ...++..|||||++.+. .++.++|||||||+
T Consensus 120 ~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~ 199 (328)
T cd08226 120 NGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGIT 199 (328)
T ss_pred CCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHH
Confidence 47999999954100 0 01134569999998763 47899999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhCCC-----------------------Cccccc-c----ccccchhhhhhhhH
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESLPH-----------------------RLSEVV-D----TNLVREEQAFSAKM 623 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~-----------------------~~~~~~-~----~~~~~~~~~~~~~~ 623 (669)
+|||++|+.||....... .+.......... .+.+.. . ..+.....+.+.+.
T Consensus 200 l~el~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (328)
T cd08226 200 ACELATGRVPFQDMLRTQ-MLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSK 278 (328)
T ss_pred HHHHHhCCCCCCCcChHH-HHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhccccccccccccccchhhh
Confidence 999999999996532211 111111000000 000000 0 00000001112234
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCHHHHHH--HHHHhHHH
Q 040540 624 DCLLSIMDLALDCCMESPDKRMHMTDAAA--KLKKIKVK 660 (669)
Q Consensus 624 ~~~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~~~~~ 660 (669)
.+...+.+++.+||+.||++|||+.|+++ .++.++..
T Consensus 279 ~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~~~ 317 (328)
T cd08226 279 TFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVKEQ 317 (328)
T ss_pred hhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHHHHh
Confidence 56778899999999999999999999975 45555443
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-22 Score=199.94 Aligned_cols=172 Identities=21% Similarity=0.222 Sum_probs=134.6
Q ss_pred cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCccc-
Q 040540 460 RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVT- 538 (669)
Q Consensus 460 ~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~~- 538 (669)
+|+|++++++.+..++..++||||+++|+|.+++... ..+++.+...++.|+++|+.|+|. .+++|+|+++...
T Consensus 67 ~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~----~~i~H~dl~p~nil 141 (267)
T PHA03390 67 DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKKE-GKLSEAEVKKIIRQLVEALNDLHK----HNIIHNDIKLENVL 141 (267)
T ss_pred cCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CCeeeCCCCHHHEE
Confidence 6999999999998888999999999999999999764 378999999999999999999995 4799999985310
Q ss_pred ---------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHH
Q 040540 539 ---------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVK 597 (669)
Q Consensus 539 ---------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~ 597 (669)
.....|+..|+|||++.+..++.++|||||||++|||++|+.||............+..
T Consensus 142 ~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~ 221 (267)
T PHA03390 142 YDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLK 221 (267)
T ss_pred EeCCCCeEEEecCccceecCCCccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHH
Confidence 01124788999999998888999999999999999999999999754333323333332
Q ss_pred HhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-HHHHHH
Q 040540 598 ESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-MTDAAA 652 (669)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-~~~v~~ 652 (669)
.. .... +.+......+.+++.+|++.+|.+||+ ++|+++
T Consensus 222 ~~-~~~~---------------~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~ 261 (267)
T PHA03390 222 RQ-QKKL---------------PFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK 261 (267)
T ss_pred hh-cccC---------------CcccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence 22 1100 011234456789999999999999995 688864
|
|
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=202.44 Aligned_cols=185 Identities=19% Similarity=0.227 Sum_probs=138.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++.+...+..++++||+++++|.+++... ..+++.+...++.+++.|+.|||.. +
T Consensus 52 ~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~----~ 126 (267)
T cd06645 52 VVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVT-GPLSESQIAYVSRETLQGLYYLHSK----G 126 (267)
T ss_pred HHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 3556888999999999999999998888999999999999999998754 4688999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHHhCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
++|+|+++.. ......|+..|+|||++. ...++.++|||||||++|||++|+
T Consensus 127 i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~ 206 (267)
T cd06645 127 KMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQ 206 (267)
T ss_pred eecCCCCHHHEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCC
Confidence 9999988430 011225889999999874 345889999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.|+....... .+......... .+.... .......+.+++.+|++.+|++||+++++++
T Consensus 207 ~p~~~~~~~~-~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~ 264 (267)
T cd06645 207 PPMFDLHPMR-ALFLMTKSNFQ-------PPKLKD-------KMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ 264 (267)
T ss_pred CCcccccchh-hHHhhhccCCC-------CCcccc-------cCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence 9986532111 11111111000 000000 0112335679999999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-22 Score=208.79 Aligned_cols=128 Identities=23% Similarity=0.288 Sum_probs=110.5
Q ss_pred chhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
..|..++..++|+|++++++++......++|+||+. ++|.+++......+++..+..|+.|+++||.|||. .+|+
T Consensus 105 ~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~----~~iv 179 (357)
T PHA03209 105 LIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHA----QRII 179 (357)
T ss_pred HHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH----CCee
Confidence 458889999999999999999998888999999995 69999997766678999999999999999999995 4799
Q ss_pred ecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 530 HCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 530 h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|||+|+.. ......||..|+|||++.+..++.++|||||||++|||+++..|+
T Consensus 180 HrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~ 256 (357)
T PHA03209 180 HRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI 256 (357)
T ss_pred cCCCCHHHEEECCCCCEEEecCccccccccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence 99999531 011235899999999999888999999999999999999976655
|
|
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=204.82 Aligned_cols=183 Identities=25% Similarity=0.250 Sum_probs=139.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++.+.|......++||||++ |++.+++......+++..+..++.|++.|+.|||. .
T Consensus 60 ~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~----~ 134 (307)
T cd06607 60 QDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLHS----H 134 (307)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 346678899999999999999999998888999999997 68888876555678999999999999999999994 4
Q ss_pred CeeecCCCCcc---------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV---------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+++|+|+++.. ......|+..|+|||+.. ...++.++|||||||++|||+||+.||
T Consensus 135 ~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~ 214 (307)
T cd06607 135 ERIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 214 (307)
T ss_pred CceecCCCcccEEECCCCCEEEeecCcceecCCCCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCC
Confidence 79999988541 111234788999999874 355889999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
..... ...........+ +.+. .......+.+++.+||+.+|++||+|.+|+.
T Consensus 215 ~~~~~--~~~~~~~~~~~~--------~~~~--------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 266 (307)
T cd06607 215 FNMNA--MSALYHIAQNDS--------PTLS--------SNDWSDYFRNFVDSCLQKIPQDRPSSEELLK 266 (307)
T ss_pred CCccH--HHHHHHHhcCCC--------CCCC--------chhhCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 65321 111111110000 0110 1234456889999999999999999999987
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-22 Score=226.57 Aligned_cols=192 Identities=17% Similarity=0.204 Sum_probs=141.6
Q ss_pred ccCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
..+..|+.++..++||||+++++++.. ....++||||+++|+|.++|... ...+++.....|+.|++.||+|||.
T Consensus 57 ~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs 136 (1021)
T PTZ00266 57 SQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHN 136 (1021)
T ss_pred HHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 346679999999999999999998744 45678999999999999999752 2468999999999999999999996
Q ss_pred CC---CCCCeeecCCCCccc-----------------------------------------ccccccccccCccccccC-
Q 040540 522 GH---SSAPIIHCEGEDSVT-----------------------------------------QTTTMATIGYMAPEYGSE- 556 (669)
Q Consensus 522 ~~---~~~~i~h~d~~~~~~-----------------------------------------~~~~~gt~~y~aPE~~~~- 556 (669)
.+ ...+|+|+|+|+... .....||+.|+|||++.+
T Consensus 137 ~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge 216 (1021)
T PTZ00266 137 LKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHE 216 (1021)
T ss_pred cccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhcc
Confidence 32 124699999985310 011248999999998854
Q ss_pred -CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 -GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 -~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..++.++||||||||+|||+||+.||.... .+...+...... +.+. .......+.+++.+
T Consensus 217 ~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~----~~~qli~~lk~~-------p~lp--------i~~~S~eL~dLI~~ 277 (1021)
T PTZ00266 217 TKSYDDKSDMWALGCIIYELCSGKTPFHKAN----NFSQLISELKRG-------PDLP--------IKGKSKELNILIKN 277 (1021)
T ss_pred CCCCCchhHHHHHHHHHHHHHHCCCCCCcCC----cHHHHHHHHhcC-------CCCC--------cCCCCHHHHHHHHH
Confidence 448899999999999999999999996421 122222111100 0000 01123457899999
Q ss_pred cccCCCCCCCCHHHHHH--HHHHh
Q 040540 636 CCMESPDKRMHMTDAAA--KLKKI 657 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~--~l~~~ 657 (669)
||..+|.+||++.|++. .++.+
T Consensus 278 ~L~~dPeeRPSa~QlL~h~~ik~i 301 (1021)
T PTZ00266 278 LLNLSAKERPSALQCLGYQIIKNV 301 (1021)
T ss_pred HhcCChhHCcCHHHHhccHHHhhc
Confidence 99999999999999984 44444
|
|
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=205.00 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=143.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|+|++++++.+......++++||+++++|.+++......+++..+..++.+++.|+.|||. .
T Consensus 60 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~----~ 135 (286)
T cd06614 60 ELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHS----Q 135 (286)
T ss_pred HHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 356678899999999999999999988899999999999999999998755478999999999999999999994 5
Q ss_pred CeeecCCCCccc-------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSVT-------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~~-------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++... .....|+..|+|||+..+..++.++|||||||++|||++|+.|
T Consensus 136 gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p 215 (286)
T cd06614 136 NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPP 215 (286)
T ss_pred CeeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCC
Confidence 899999884310 0112367889999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|...... ...........+ . ..........+.+++.+|++.+|++||++.++++
T Consensus 216 ~~~~~~~-~~~~~~~~~~~~----~------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~ 269 (286)
T cd06614 216 YLREPPL-RALFLITTKGIP----P------------LKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQ 269 (286)
T ss_pred CCCCCHH-HHHHHHHhcCCC----C------------CcchhhCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence 8642111 111111111000 0 0011223456789999999999999999999975
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=216.58 Aligned_cols=182 Identities=24% Similarity=0.248 Sum_probs=138.4
Q ss_pred cCchhhhhhccccccccceecccccccc--------ccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPD--------FKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSAL 516 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~--------~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l 516 (669)
.+..|+..+..++|+|++++...+.... ..++||||+++|+|.++++.. ...+++.....|+.|++.||
T Consensus 77 ~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL 156 (496)
T PTZ00283 77 RAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAV 156 (496)
T ss_pred HHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHH
Confidence 4557888899999999999877654321 357999999999999999752 34688888999999999999
Q ss_pred hhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhH
Q 040540 517 EYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569 (669)
Q Consensus 517 ~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G 569 (669)
+|+|. .+|+|||+|+.. ......||+.|+|||++.+..++.++||||||
T Consensus 157 ~~lH~----~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlG 232 (496)
T PTZ00283 157 HHVHS----KHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLG 232 (496)
T ss_pred HHHHh----CCEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHH
Confidence 99994 589999999530 01123589999999999988899999999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|++|||++|+.||.... ....+......... . .+......+.+++.+||+.||.+||++.+
T Consensus 233 vilyeLltG~~Pf~~~~-----~~~~~~~~~~~~~~-~-------------~~~~~~~~l~~li~~~L~~dP~~RPs~~e 293 (496)
T PTZ00283 233 VLLYELLTLKRPFDGEN-----MEEVMHKTLAGRYD-P-------------LPPSISPEMQEIVTALLSSDPKRRPSSSK 293 (496)
T ss_pred HHHHHHHHCCCCCCCCC-----HHHHHHHHhcCCCC-C-------------CCCCCCHHHHHHHHHHcccChhhCcCHHH
Confidence 99999999999986521 22222221111100 0 01223456789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 294 ll~ 296 (496)
T PTZ00283 294 LLN 296 (496)
T ss_pred HHh
Confidence 876
|
|
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=203.53 Aligned_cols=183 Identities=19% Similarity=0.219 Sum_probs=135.0
Q ss_pred cCchhhhhhccc-cccccceeccccccc------cccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhh
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
.+..|+..+..+ +|+|++++++.+... ...+++|||+++|+|.+++... ...+++.....++.|+++|++||
T Consensus 48 ~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~L 127 (272)
T cd06637 48 EIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHL 127 (272)
T ss_pred HHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 455678888887 699999999988642 3568999999999999999863 34688999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-------------------------cccccccccccCcccccc-----CCCcCccccchhhH
Q 040540 520 RHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYG 569 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~G 569 (669)
|+ .+++|+|+++.. ......|+..|+|||++. +..++.++||||||
T Consensus 128 H~----~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG 203 (272)
T cd06637 128 HQ----HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLG 203 (272)
T ss_pred HH----CCCccCCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHH
Confidence 95 479999988320 011234788999999875 34578899999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|++|||++|+.||..... ........ ........ ....+..+.+++.+||..+|.+|||+.|
T Consensus 204 v~l~el~~g~~p~~~~~~----~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~li~~~l~~~p~~Rpt~~~ 265 (272)
T cd06637 204 ITAIEMAEGAPPLCDMHP----MRALFLIP-RNPAPRLK-------------SKKWSKKFQSFIESCLVKNHSQRPTTEQ 265 (272)
T ss_pred HHHHHHHhCCCCccccCH----HHHHHHHh-cCCCCCCC-------------CCCcCHHHHHHHHHHcCCChhhCCCHHH
Confidence 999999999999865321 11111000 00000000 1122345789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 266 il~ 268 (272)
T cd06637 266 LMK 268 (272)
T ss_pred Hhh
Confidence 874
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-22 Score=199.99 Aligned_cols=191 Identities=20% Similarity=0.211 Sum_probs=141.6
Q ss_pred ccCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
..+.+|++.++.++|+|+++++++|.. ....++||||+++++|.+++.. ....+++.....++.++++|+.|+|.
T Consensus 44 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~ 123 (287)
T cd06621 44 KQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHS 123 (287)
T ss_pred HHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999998754 3457899999999999988753 34457888899999999999999995
Q ss_pred CCCCCCeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 522 GHSSAPIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......++..|+|||...+..++.++||||+||++|||++|
T Consensus 124 ----~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g 199 (287)
T cd06621 124 ----RKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQN 199 (287)
T ss_pred ----CCcccCCCCHHHEEEecCCeEEEeeccccccccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhC
Confidence 479999987320 01112367889999999888899999999999999999999
Q ss_pred CCCCCcCCC---CCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFT---GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ....+..++.............. ....+..+.+++.+||..+|++||||.|+++
T Consensus 200 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~ 265 (287)
T cd06621 200 RFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGN-----------GIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE 265 (287)
T ss_pred CCCCCcccCCCCChHHHHHHHhcCCchhhccCCCC-----------CCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence 999975421 11223333322111111100000 0123456789999999999999999999987
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-22 Score=198.90 Aligned_cols=182 Identities=18% Similarity=0.247 Sum_probs=141.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..++.++|+|++++++.+...+..++|+||+++++|.+++... ...+++.+...++.+++.|+.|+|. .
T Consensus 45 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~----~ 120 (256)
T cd08218 45 ESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHD----R 120 (256)
T ss_pred HHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 5667889999999999999999998888999999999999999999753 3357888999999999999999994 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......|+..|+|||+..+..++.++|||||||+++||+||+.|
T Consensus 121 ~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~ 200 (256)
T cd08218 121 KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHA 200 (256)
T ss_pred CEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCC
Confidence 79999988431 00112478889999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... ....+......... . .+......+.+++.+||+.+|++||+|.||++
T Consensus 201 ~~~~~-----~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~ 252 (256)
T cd08218 201 FEAGN-----MKNLVLKIIRGSYP-----P---------VSSHYSYDLRNLVSQLFKRNPRDRPSVNSILE 252 (256)
T ss_pred ccCCC-----HHHHHHHHhcCCCC-----C---------CcccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence 86421 11111111111000 0 01223456789999999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-22 Score=200.75 Aligned_cols=185 Identities=21% Similarity=0.217 Sum_probs=139.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++.+++|+|++++++.+..+...++||||++++++..+. .+++.....++.+++.|++|+|+ .
T Consensus 44 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~----~ 114 (279)
T cd06619 44 KQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVYR-----KIPEHVLGRIAVAVVKGLTYLWS----L 114 (279)
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCChHHhh-----cCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 34667889999999999999999999888899999999999997653 36778888999999999999995 4
Q ss_pred CeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 527 PIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 527 ~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+++|+|+++.. ......||..|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus 115 ~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~ 194 (279)
T cd06619 115 KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYP 194 (279)
T ss_pred CEeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCch
Confidence 89999998431 1122358899999999988889999999999999999999999996
Q ss_pred cCCCCCcc--HHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 584 EMFTGEMS--LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 584 ~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
........ ...+........ .+.+. ......++.+++.+|++.+|++||+++|+++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~ 253 (279)
T cd06619 195 QIQKNQGSLMPLQLLQCIVDED-----PPVLP--------VGQFSEKFVHFITQCMRKQPKERPAPENLMDH 253 (279)
T ss_pred hhcccccccchHHHHHHHhccC-----CCCCC--------CCcCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 53221110 111111110000 00000 11123457899999999999999999999764
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=214.32 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=138.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|..++..++|+|++++++.+......++||||+++|+|.+++.+. ..+++.....++.+++.|++|||. .
T Consensus 46 ~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~aL~~LH~----~ 120 (381)
T cd05626 46 AHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM-EVFPEVLARFYIAELTLAIESVHK----M 120 (381)
T ss_pred HHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 34667889999999999999999999999999999999999999999754 457888888899999999999994 4
Q ss_pred CeeecCCCCcc--------------c------------------------------------------------------
Q 040540 527 PIIHCEGEDSV--------------T------------------------------------------------------ 538 (669)
Q Consensus 527 ~i~h~d~~~~~--------------~------------------------------------------------------ 538 (669)
+|+|||+|+.. .
T Consensus 121 givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (381)
T cd05626 121 GFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQH 200 (381)
T ss_pred CeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhccccccc
Confidence 89999998430 0
Q ss_pred ----ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccc
Q 040540 539 ----QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVR 614 (669)
Q Consensus 539 ----~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 614 (669)
..+.+||+.|+|||++.+..++.++|||||||++|||+||+.||....... ....+.. ..... .
T Consensus 201 ~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~--~~~~i~~-~~~~~------~--- 268 (381)
T cd05626 201 QRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTE--TQLKVIN-WENTL------H--- 268 (381)
T ss_pred cccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHH--HHHHHHc-ccccc------C---
Confidence 012358999999999988889999999999999999999999997532111 1110000 00000 0
Q ss_pred hhhhhhhhHHHHHHHHHHHhh--cccCCCCCCCCHHHHHH
Q 040540 615 EEQAFSAKMDCLLSIMDLALD--CCMESPDKRMHMTDAAA 652 (669)
Q Consensus 615 ~~~~~~~~~~~~~~~~~l~~~--c~~~~P~~Rps~~~v~~ 652 (669)
.+.......++.+++.+ |+..+|..||++.|+++
T Consensus 269 ----~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~ 304 (381)
T cd05626 269 ----IPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKA 304 (381)
T ss_pred ----CCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhc
Confidence 00011223456677776 66677777999999976
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-23 Score=213.51 Aligned_cols=183 Identities=19% Similarity=0.271 Sum_probs=141.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|...+..++|+|++++++.+......++||||+++|+|.+++.+. ..+++.....++.++++||+|||. .+
T Consensus 47 ~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~----~g 121 (350)
T cd05573 47 HVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRK-DVFPEETARFYIAELVLALDSVHK----LG 121 (350)
T ss_pred HHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4667888999999999999999999889999999999999999999864 568888999999999999999994 58
Q ss_pred eeecCCCCcc-----------------------c-------------------------------ccccccccccCcccc
Q 040540 528 IIHCEGEDSV-----------------------T-------------------------------QTTTMATIGYMAPEY 553 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~-------------------------------~~~~~gt~~y~aPE~ 553 (669)
++|+|+|+.. . .....||+.|+|||+
T Consensus 122 iiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 201 (350)
T cd05573 122 FIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEV 201 (350)
T ss_pred eeccCCCHHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHH
Confidence 9999998320 0 112358999999999
Q ss_pred ccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHH
Q 040540 554 GSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLA 633 (669)
Q Consensus 554 ~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 633 (669)
+.+..++.++|||||||++|||++|+.||...... ..+ ....... .... .+........+.+++
T Consensus 202 ~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~----~~~-~~i~~~~-~~~~----------~p~~~~~~~~~~~li 265 (350)
T cd05573 202 LRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQ----ETY-NKIINWK-ESLR----------FPPDPPVSPEAIDLI 265 (350)
T ss_pred HcCCCCCCceeeEecchhhhhhccCCCCCCCCCHH----HHH-HHHhccC-Cccc----------CCCCCCCCHHHHHHH
Confidence 99889999999999999999999999999753211 111 1100000 0000 000111345678999
Q ss_pred hhcccCCCCCCCC-HHHHHH
Q 040540 634 LDCCMESPDKRMH-MTDAAA 652 (669)
Q Consensus 634 ~~c~~~~P~~Rps-~~~v~~ 652 (669)
.+|+. ||.+||+ ++|+++
T Consensus 266 ~~ll~-dp~~R~~s~~~ll~ 284 (350)
T cd05573 266 CRLLC-DPEDRLGSFEEIKS 284 (350)
T ss_pred HHHcc-ChhhcCCCHHHHhc
Confidence 99997 9999999 999986
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-22 Score=200.39 Aligned_cols=184 Identities=19% Similarity=0.263 Sum_probs=141.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..++.++|+|+++++++|......+++|||+++++|.+++.+. ..+++.....++.++++|++|+|. .
T Consensus 47 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~ 121 (265)
T cd06631 47 EKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRF-GPLPEPVFCKYTKQILDGVAYLHN----N 121 (265)
T ss_pred HHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 34667899999999999999999999888999999999999999999754 457888888999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 527 PIIHCEGEDSV-------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
+++|+|+++.. ......|+..|+|||+..+..++.++|||||||++|||
T Consensus 122 ~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l 201 (265)
T cd06631 122 CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEM 201 (265)
T ss_pred CcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHH
Confidence 69999988431 00112378889999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++|+.||....... ........ ... .+.+ +......+.+++.+||..+|++||++.|+++
T Consensus 202 ~~g~~p~~~~~~~~-~~~~~~~~---~~~----~~~~---------~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~ 261 (265)
T cd06631 202 ATGKPPLASMDRLA-AMFYIGAH---RGL----MPRL---------PDSFSAAAIDFVTSCLTRDQHERPSALQLLR 261 (265)
T ss_pred HhCCCccccCChHH-HHHHhhhc---cCC----CCCC---------CCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 99999997532111 11110000 000 0111 1123445789999999999999999999874
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=213.16 Aligned_cols=183 Identities=16% Similarity=0.221 Sum_probs=137.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.+++... .++......++.++++||+|||. .+
T Consensus 89 ~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~--~l~~~~~~~~~~qi~~aL~~LH~----~~ 162 (370)
T cd05596 89 FFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMSNY--DIPEKWARFYTAEVVLALDAIHS----MG 162 (370)
T ss_pred HHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 3567888999999999999999999889999999999999999999753 46777788899999999999995 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCC----CcCccccchhhHHHHHHHHh
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEG----IVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~s~Gvil~el~t 577 (669)
|+|||+|+.. ......||+.|+|||++... .++.++|||||||++|||++
T Consensus 163 ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyellt 242 (370)
T cd05596 163 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV 242 (370)
T ss_pred eeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHh
Confidence 9999998430 01123589999999987643 47899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC--CCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK--RMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~--Rps~~~v~~ 652 (669)
|+.||..... ......+.... . .. .++.....+..+.+++.+|++.+|.+ ||++.|+++
T Consensus 243 G~~Pf~~~~~--~~~~~~i~~~~-~---~~----------~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~ 303 (370)
T cd05596 243 GDTPFYADSL--VGTYSKIMDHK-N---SL----------TFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKS 303 (370)
T ss_pred CCCCcCCCCH--HHHHHHHHcCC-C---cC----------CCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence 9999965221 10111110000 0 00 00111123456789999999999987 999999965
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-22 Score=198.65 Aligned_cols=182 Identities=19% Similarity=0.256 Sum_probs=141.6
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..++.++|+|++++++.+......++++||+++++|.+++.+. +..+++..+..++.++++|+.|||. .
T Consensus 45 ~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~----~ 120 (257)
T cd08225 45 ASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHD----R 120 (257)
T ss_pred HHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 4557889999999999999999999888999999999999999999753 3357899999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+++.. ......|++.|+|||+..+..++.++|||||||++|||++|+.
T Consensus 121 ~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~ 200 (257)
T cd08225 121 KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKH 200 (257)
T ss_pred CcccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 79999988431 0011237788999999888889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... ..+++........... .......+.+++.+||..+|++|||+.|+++
T Consensus 201 p~~~~~-----~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~ 253 (257)
T cd08225 201 PFEGNN-----LHQLVLKICQGYFAPI--------------SPNFSRDLRSLISQLFKVSPRDRPSITSILK 253 (257)
T ss_pred CCCCcc-----HHHHHHHHhcccCCCC--------------CCCCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence 986421 2222222221111110 1112345789999999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-22 Score=200.37 Aligned_cols=182 Identities=20% Similarity=0.308 Sum_probs=141.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++......+++|||+++++|.+++... ..+++.....++.+++.|++|||. .
T Consensus 51 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lH~----~ 125 (267)
T cd06628 51 DALAREIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNY-GAFEETLVRNFVRQILKGLNYLHN----R 125 (267)
T ss_pred HHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEEEEecCCCCHHHHHHhc-cCccHHHHHHHHHHHHHHHHHHHh----c
Confidence 35667889999999999999999998888999999999999999999754 457888889999999999999995 4
Q ss_pred CeeecCCCCcc--------------------c-----------ccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 527 PIIHCEGEDSV--------------------T-----------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------~-----------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
+++|+|+++.. . .....|+..|+|||.+.+..++.++|||||||++|||
T Consensus 126 ~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l 205 (267)
T cd06628 126 GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEM 205 (267)
T ss_pred CcccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHH
Confidence 79999988430 0 0012367889999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++|+.||..... ........ . ...+.+ +......+.+++.+||+.||.+||++.||++
T Consensus 206 ~~g~~p~~~~~~----~~~~~~~~--~----~~~~~~---------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 263 (267)
T cd06628 206 LTGKHPFPDCTQ----LQAIFKIG--E----NASPEI---------PSNISSEAIDFLEKTFEIDHNKRPTAAELLK 263 (267)
T ss_pred hhCCCCCCCccH----HHHHHHHh--c----cCCCcC---------CcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence 999999975321 11100000 0 000111 1223456789999999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=208.55 Aligned_cols=169 Identities=22% Similarity=0.197 Sum_probs=131.1
Q ss_pred hhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCC
Q 040540 455 VLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGE 534 (669)
Q Consensus 455 ~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~ 534 (669)
.+..++|||++++++.+...+..++||||+++|+|.+++... ..+++.....++.|+++||+|||. .+++|||+|
T Consensus 49 ~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~givH~dik 123 (323)
T cd05575 49 LLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRE-RSFPEPRARFYAAEIASALGYLHS----LNIIYRDLK 123 (323)
T ss_pred HHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CCeEeCCCC
Confidence 456789999999999998888899999999999999999753 457888888999999999999995 479999998
Q ss_pred Ccc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCC
Q 040540 535 DSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589 (669)
Q Consensus 535 ~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~ 589 (669)
+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 124 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~--- 200 (323)
T cd05575 124 PENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD--- 200 (323)
T ss_pred HHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC---
Confidence 430 0112348999999999988889999999999999999999999986532
Q ss_pred ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 590 MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
..+.......... .+ +......+.+++.+|++.||.+||++.
T Consensus 201 --~~~~~~~i~~~~~--~~-------------~~~~~~~~~~li~~~l~~~p~~R~~~~ 242 (323)
T cd05575 201 --TAEMYDNILNKPL--RL-------------KPNISVSARHLLEGLLQKDRTKRLGAK 242 (323)
T ss_pred --HHHHHHHHHcCCC--CC-------------CCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence 1111111111100 00 111234578999999999999999985
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-23 Score=213.62 Aligned_cols=184 Identities=17% Similarity=0.235 Sum_probs=139.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++...+|++++++++.+......++||||+++|+|.+++.+....+++.....++.|+++||.|||. .+
T Consensus 47 ~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~----~~ 122 (330)
T cd05601 47 FFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQ----MG 122 (330)
T ss_pred HHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45678888889999999999999988888999999999999999998765678999999999999999999994 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCcccccc------CCCcCccccchhhHHHHHHH
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGS------EGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~s~Gvil~el 575 (669)
|+|||+|+.. ......||+.|+|||++. ...++.++|||||||++|||
T Consensus 123 i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el 202 (330)
T cd05601 123 YVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEM 202 (330)
T ss_pred eEcccCchHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeee
Confidence 9999998430 001125899999999886 45578999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++|+.||...... ......... .... .++........+.+++.+|+. +|++||++.++++
T Consensus 203 ~~g~~Pf~~~~~~-----~~~~~i~~~--~~~~---------~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~ 262 (330)
T cd05601 203 IYGRSPFHEGTSA-----KTYNNIMNF--QRFL---------KFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCC 262 (330)
T ss_pred ccCCCCCCCCCHH-----HHHHHHHcC--CCcc---------CCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence 9999999653211 111111000 0000 000111234557889999997 9999999999874
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-22 Score=201.43 Aligned_cols=180 Identities=18% Similarity=0.193 Sum_probs=137.2
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|+.++..++|++++.+.+.+...+..+++|||+++|+|.+++... ...+++.....++.|+++|+.|||. .+
T Consensus 47 ~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~----~~ 122 (285)
T cd05632 47 ALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHR----EN 122 (285)
T ss_pred HHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 456889999999999999999988888899999999999999988753 3368999999999999999999994 47
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
|+|+|+++.. ......|+..|+|||++.+..++.++|||||||++|||+||+.||.
T Consensus 123 iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~ 202 (285)
T cd05632 123 TVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFR 202 (285)
T ss_pred eeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCC
Confidence 9999998420 0112357899999999988889999999999999999999999997
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
...... ...-+......... .. +......+.+++.+|++.||++||++.
T Consensus 203 ~~~~~~--~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~li~~~l~~~P~~R~~~~ 251 (285)
T cd05632 203 GRKEKV--KREEVDRRVLETEE-VY-------------SAKFSEEAKSICKMLLTKDPKQRLGCQ 251 (285)
T ss_pred CCCHHH--HHHHHHHhhhcccc-cc-------------CccCCHHHHHHHHHHccCCHhHcCCCc
Confidence 532111 11111111111000 00 112234567999999999999999943
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-22 Score=203.01 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=140.6
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+..|+..+..++|+|++++++++..+...++||||++ ++|.+++......+++.....++.++++|++|||. .++
T Consensus 51 ~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~----~~i 125 (301)
T cd07873 51 AIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHR----RKV 125 (301)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh----CCe
Confidence 4568899999999999999999998889999999998 69999987665668888999999999999999994 589
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|+++.. ......+++.|+|||++.+ ..++.++|||||||++|||+||+.||
T Consensus 126 ~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f 205 (301)
T cd07873 126 LHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLF 205 (301)
T ss_pred eCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCC
Confidence 999998430 0112246889999998765 34788999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCC----Ccccccc---------ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPH----RLSEVVD---------TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
..... ......+...... .+...++ +....... ..........+.+++.+|++.||.+|||+.|
T Consensus 206 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~ml~~dp~~R~t~~e 282 (301)
T cd07873 206 PGSTV--EEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCL-HNHAPRLDSDGAELLSKLLQFEGRKRISAEE 282 (301)
T ss_pred CCCCH--HHHHHHHHHHcCCCChhhchhhhccccccccccCccccccH-HhhcCCCCHHHHHHHHHHhcCCcccCcCHHH
Confidence 65321 1111111111111 0111110 00000000 0001123456789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 283 il~ 285 (301)
T cd07873 283 AMK 285 (301)
T ss_pred Hhc
Confidence 986
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-22 Score=208.45 Aligned_cols=184 Identities=20% Similarity=0.162 Sum_probs=136.6
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ +|++++++++.+......++||||+++|+|.+++... ..+++.....++.+++.||+|||. .
T Consensus 50 ~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~ 124 (332)
T cd05614 50 HTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQR-DNFSEDEVRFYSGEIILALEHLHK----L 124 (332)
T ss_pred HHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 345678888888 4899999999888888899999999999999999753 457888899999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|||+|+.. ......||+.|||||++.+. .++.++|||||||++|||+||+
T Consensus 125 ~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~ 204 (332)
T cd05614 125 GIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGA 204 (332)
T ss_pred CcEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCC
Confidence 79999998430 01123589999999998764 4788999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
.||....... ............ ++.+ +......+.+++.+|++.||++|| +++++++
T Consensus 205 ~pf~~~~~~~-~~~~~~~~~~~~------~~~~---------~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~ 266 (332)
T cd05614 205 SPFTLEGERN-TQSEVSRRILKC------DPPF---------PSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE 266 (332)
T ss_pred CCCCCCCCCC-CHHHHHHHHhcC------CCCC---------CCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence 9996432111 111111111100 0111 112234568999999999999999 5666654
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=204.35 Aligned_cols=182 Identities=18% Similarity=0.201 Sum_probs=140.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++.+......++||||+++++|.+++.+ ..+++..+..++.++++|+.|||. .+
T Consensus 62 ~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~l~~~L~~LH~----~~ 135 (297)
T cd06656 62 LIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALDFLHS----NQ 135 (297)
T ss_pred HHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 456788889999999999999999988899999999999999999964 347888999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......|++.|+|||...+..++.++|||||||++|||+||+.||
T Consensus 136 i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf 215 (297)
T cd06656 136 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPY 215 (297)
T ss_pred cccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 9999988430 011224788999999998888899999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
............+ .... +. ...+......+.+++.+||..+|++||+++++++
T Consensus 216 ~~~~~~~~~~~~~-~~~~---------~~-------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 268 (297)
T cd06656 216 LNENPLRALYLIA-TNGT---------PE-------LQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQ 268 (297)
T ss_pred CCCCcchheeeec-cCCC---------CC-------CCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 6522111000000 0000 00 0012233445789999999999999999999987
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=208.06 Aligned_cols=174 Identities=22% Similarity=0.204 Sum_probs=132.8
Q ss_pred hhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCC
Q 040540 455 VLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGE 534 (669)
Q Consensus 455 ~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~ 534 (669)
.+..++|+|++++++.+...+..++||||+++|+|.+++... ..+.......++.|+++||+|||. .+++|||+|
T Consensus 49 ~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~----~giiHrDlk 123 (325)
T cd05602 49 LLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE-RCFLEPRARFYAAEIASALGYLHS----LNIVYRDLK 123 (325)
T ss_pred HHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CCeEecCCC
Confidence 456789999999999998888999999999999999999754 346777777899999999999994 479999998
Q ss_pred Ccc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCC
Q 040540 535 DSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589 (669)
Q Consensus 535 ~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~ 589 (669)
+.. ......||+.|+|||++.+..++.++||||+||++|||++|+.||.....
T Consensus 124 p~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-- 201 (325)
T cd05602 124 PENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-- 201 (325)
T ss_pred HHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH--
Confidence 430 01123589999999999988899999999999999999999999975321
Q ss_pred ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 590 MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
..+...+... +.. . +......+.+++.+|++.+|.+||++.+.+..
T Consensus 202 ~~~~~~i~~~-~~~----~-------------~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ 247 (325)
T cd05602 202 AEMYDNILNK-PLQ----L-------------KPNITNSARHLLEGLLQKDRTKRLGAKDDFME 247 (325)
T ss_pred HHHHHHHHhC-CcC----C-------------CCCCCHHHHHHHHHHcccCHHHCCCCCCCHHH
Confidence 1111111111 000 0 11223457899999999999999998754433
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-22 Score=200.54 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=140.4
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|+.++..++|++++.+++.+...+..++||||+++|+|.+++... ...+++..+..++.+++.|+.|||. .+
T Consensus 47 ~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~----~~ 122 (285)
T cd05630 47 ALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQ----ER 122 (285)
T ss_pred HHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 456888999999999999999998888999999999999999998643 2358889999999999999999994 58
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
++|+|+++.. ......||..|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus 123 iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~ 202 (285)
T cd05630 123 IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQ 202 (285)
T ss_pred EEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCC
Confidence 9999998431 0112358899999999988889999999999999999999999997
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
...... .. +-..... .... .. .+......+.+++.+||+.||++||| +.|+++
T Consensus 203 ~~~~~~-~~-~~~~~~~-~~~~----~~---------~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~ 260 (285)
T cd05630 203 QRKKKI-KR-EEVERLV-KEVQ----EE---------YSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKE 260 (285)
T ss_pred CCCccc-hH-HHHHhhh-hhhh----hh---------cCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence 532111 00 0000000 0000 00 01223345789999999999999999 778876
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-22 Score=202.63 Aligned_cols=183 Identities=20% Similarity=0.224 Sum_probs=140.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|||++++++.+...+..++|+||+++++|.+++.+. .+++.++..++.++++|+.|||. .+
T Consensus 62 ~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~l~~al~~LH~----~g 135 (293)
T cd06647 62 LIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHS----NQ 135 (293)
T ss_pred HHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4567888899999999999999998888999999999999999999753 47888999999999999999994 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......|++.|+|||......++.++|||||||++||+++|+.||
T Consensus 136 i~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf 215 (293)
T cd06647 136 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPY 215 (293)
T ss_pred EeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 9999988431 011124778899999988888899999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
........ +...... . .+.+..+......+.+++.+||+.+|++||++.+++..
T Consensus 216 ~~~~~~~~-~~~~~~~---~-------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h 269 (293)
T cd06647 216 LNENPLRA-LYLIATN---G-------------TPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH 269 (293)
T ss_pred CCCChhhh-eeehhcC---C-------------CCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 65321110 0000000 0 00011122334567899999999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-22 Score=203.19 Aligned_cols=204 Identities=13% Similarity=0.198 Sum_probs=142.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++..+...++||||++ +++.+++...+..+++.....++.++++|++|||. .+
T Consensus 50 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~----~~ 124 (309)
T cd07872 50 TAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLD-KDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHR----RK 124 (309)
T ss_pred hHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 34568899999999999999999998889999999998 58999887666668888999999999999999994 48
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|||+++.. ......||+.|+|||++.+ ..++.++|||||||++|||+||+.|
T Consensus 125 ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~p 204 (309)
T cd07872 125 VLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPL 204 (309)
T ss_pred eecCCCCHHHEEECCCCCEEECccccceecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 9999998430 0112347889999998765 4588999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCC----Cccccccc------cccc--hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPH----RLSEVVDT------NLVR--EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|....... .+.... ..... .+..+... .... ..............+.+++.+|++.||.+|||+.|
T Consensus 205 f~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e 282 (309)
T cd07872 205 FPGSTVED-ELHLIF-RLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEE 282 (309)
T ss_pred CCCCChHH-HHHHHH-HHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHH
Confidence 96532111 111111 10000 00000000 0000 00000011123456789999999999999999999
Q ss_pred HHH--HHHHhH
Q 040540 650 AAA--KLKKIK 658 (669)
Q Consensus 650 v~~--~l~~~~ 658 (669)
+++ .++.+.
T Consensus 283 ~l~h~~~~~~~ 293 (309)
T cd07872 283 AMKHAYFRSLG 293 (309)
T ss_pred HhcChhhhhcc
Confidence 987 344443
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-22 Score=209.60 Aligned_cols=174 Identities=21% Similarity=0.198 Sum_probs=133.1
Q ss_pred hhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCC
Q 040540 455 VLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGE 534 (669)
Q Consensus 455 ~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~ 534 (669)
+++.++|||++++++.+...+..++||||+++|+|..++.. ...+++.....++.|+++|++|||. .+++|||+|
T Consensus 49 ~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH~----~givH~Dlk 123 (325)
T cd05604 49 LLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQR-ERSFPEPRARFYAAEIASALGYLHS----INIVYRDLK 123 (325)
T ss_pred HHHhCCCCCCccEEEEEecCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHH----CCeeecCCC
Confidence 45678999999999999888899999999999999999874 3468889999999999999999994 479999998
Q ss_pred Ccc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCC
Q 040540 535 DSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589 (669)
Q Consensus 535 ~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~ 589 (669)
+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||.... .
T Consensus 124 p~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~--~ 201 (325)
T cd05604 124 PENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRD--V 201 (325)
T ss_pred HHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCC--H
Confidence 420 0112348999999999998889999999999999999999999986522 1
Q ss_pred ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 590 MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
..+.+ ....... .+. ......+.+++.+|++.+|.+||++++.++.
T Consensus 202 ~~~~~---~~~~~~~--~~~-------------~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~ 247 (325)
T cd05604 202 AEMYD---NILHKPL--VLR-------------PGASLTAWSILEELLEKDRQRRLGAKEDFLE 247 (325)
T ss_pred HHHHH---HHHcCCc--cCC-------------CCCCHHHHHHHHHHhccCHHhcCCCCCCHHH
Confidence 11111 1111000 000 1123456789999999999999988644433
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-22 Score=205.16 Aligned_cols=184 Identities=20% Similarity=0.241 Sum_probs=151.0
Q ss_pred ccCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.....|+.++..+. |||+|.+.+.+......++|||++.+|.|++.+... ..++.+...++.+++.|+.|+|.
T Consensus 80 ~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL~~GGeLfd~i~~~--~~sE~da~~~~~~il~av~~lH~---- 153 (382)
T KOG0032|consen 80 EDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMELCEGGELFDRIVKK--HYSERDAAGIIRQILEAVKYLHS---- 153 (382)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEecCCchHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHh----
Confidence 46778999999998 999999999999999999999999999999999865 38899999999999999999995
Q ss_pred CCeeecCCCCc----------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDS----------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|||+|+. ......+||+.|+|||+.....|+.++||||.||++|.|++
T Consensus 154 ~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~ 233 (382)
T KOG0032|consen 154 LGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLS 233 (382)
T ss_pred CCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhh
Confidence 58999999843 01223469999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..||........ .....+.. + . ...+.++.....+.+++.+|+..||.+|+|+.++++
T Consensus 234 G~~PF~~~~~~~~-~~~i~~~~----~------~-----f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~ 292 (382)
T KOG0032|consen 234 GVPPFWGETEFEI-FLAILRGD----F------D-----FTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQ 292 (382)
T ss_pred CCCCCcCCChhHH-HHHHHcCC----C------C-----CCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence 9999976432221 11111100 0 0 111236677888999999999999999999999987
|
|
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-22 Score=202.26 Aligned_cols=185 Identities=21% Similarity=0.258 Sum_probs=134.4
Q ss_pred cCchhhhhhccc-cccccceeccccc-----cccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhh
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCS-----NPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~-----~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
.+..|+..+..+ +|+|++++++++. .....++||||+++++|.++++. ....+++.....++.++++|+.|
T Consensus 60 ~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 139 (286)
T cd06638 60 EIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQH 139 (286)
T ss_pred HHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHH
Confidence 355688888888 6999999999873 34567899999999999998863 23457888888999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccC-----CCcCccccchhh
Q 040540 519 LRHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-----GIVSAKCDVYSY 568 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~ 568 (669)
||. .+++|+|+++.. ......|+..|+|||++.. ..++.++|||||
T Consensus 140 lH~----~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl 215 (286)
T cd06638 140 LHV----NKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSL 215 (286)
T ss_pred HHh----CCccccCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhH
Confidence 994 479999988430 0112348889999998753 347889999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
||++|||++|+.|+..... .....+.. ........+ +......+.+++.+||+.||++||++.
T Consensus 216 Gvi~~el~~g~~p~~~~~~----~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~li~~~l~~~p~~Rps~~ 278 (286)
T cd06638 216 GITAIELGDGDPPLADLHP----MRALFKIP-RNPPPTLHQ------------PELWSNEFNDFIRKCLTKDYEKRPTVS 278 (286)
T ss_pred HHHHHHHhcCCCCCCCCch----hHHHhhcc-ccCCCcccC------------CCCcCHHHHHHHHHHccCCcccCCCHH
Confidence 9999999999999865321 11111100 000000001 111234578999999999999999999
Q ss_pred HHHHH
Q 040540 649 DAAAK 653 (669)
Q Consensus 649 ~v~~~ 653 (669)
|+++.
T Consensus 279 ell~~ 283 (286)
T cd06638 279 DLLQH 283 (286)
T ss_pred HHhhc
Confidence 99863
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-22 Score=199.87 Aligned_cols=187 Identities=17% Similarity=0.197 Sum_probs=140.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC--CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH--NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~--~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+..+..++|+|++++++.+......++||||+++++|.+++... ...+++.....++.++++|+.|||+
T Consensus 44 ~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--- 120 (286)
T cd06622 44 NQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE--- 120 (286)
T ss_pred HHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 34667888999999999999999999899999999999999999998753 2368999999999999999999994
Q ss_pred CCCeeecCCCCcc-----------------------cccccccccccCccccccCC------CcCccccchhhHHHHHHH
Q 040540 525 SAPIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEG------IVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 525 ~~~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~Gvil~el 575 (669)
..+++|+|+++.. ......|+..|+|||...+. .++.++|||||||++|||
T Consensus 121 ~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l 200 (286)
T cd06622 121 EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEM 200 (286)
T ss_pred cCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHH
Confidence 2479999988431 01112477899999987543 357899999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++|+.||..... ......+........ +. .+.+...++.+++.+||+.+|++||++.++++
T Consensus 201 ~~g~~pf~~~~~--~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~ 261 (286)
T cd06622 201 ALGRYPYPPETY--ANIFAQLSAIVDGDP-----PT---------LPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLE 261 (286)
T ss_pred HhCCCCCCCcch--hhHHHHHHHHhhcCC-----CC---------CCcccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence 999999865211 111111111000000 00 12234566789999999999999999999987
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-22 Score=207.12 Aligned_cols=175 Identities=19% Similarity=0.139 Sum_probs=132.4
Q ss_pred cCchhhhhhcccccc-ccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHR-NLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~-niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+.|+ +++.+++++...+..++||||+++|+|.+++... ..+++.....++.|++.||+|||. .
T Consensus 46 ~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~----~ 120 (324)
T cd05587 46 CTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GKFKEPHAVFYAAEIAIGLFFLHS----K 120 (324)
T ss_pred HHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 345677777777665 5777888888888899999999999999999753 457888999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||+||+.|
T Consensus 121 ~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~p 200 (324)
T cd05587 121 GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPP 200 (324)
T ss_pred CeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCC
Confidence 89999998531 01122489999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|..... ..+...+..... . .+......+.+++.+|+..||.+|++.
T Consensus 201 f~~~~~--~~~~~~i~~~~~---------~---------~~~~~~~~~~~li~~~l~~~P~~R~~~ 246 (324)
T cd05587 201 FDGEDE--DELFQSIMEHNV---------S---------YPKSLSKEAVSICKGLLTKHPAKRLGC 246 (324)
T ss_pred CCCCCH--HHHHHHHHcCCC---------C---------CCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 975321 111111111100 0 011223457899999999999999976
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-22 Score=213.69 Aligned_cols=183 Identities=17% Similarity=0.245 Sum_probs=139.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|+|++++++.+..+...++||||+++|+|.+++... ..+++.....|+.|+++||+|||. .+
T Consensus 47 ~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH~----~~ 121 (364)
T cd05599 47 HVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKK-DTFTEEETRFYIAETILAIDSIHK----LG 121 (364)
T ss_pred HHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567899999999999999999999999999999999999999999754 458889999999999999999995 47
Q ss_pred eeecCCCCccc---------------------------------------------------------------cccccc
Q 040540 528 IIHCEGEDSVT---------------------------------------------------------------QTTTMA 544 (669)
Q Consensus 528 i~h~d~~~~~~---------------------------------------------------------------~~~~~g 544 (669)
|+|||+|+... ....+|
T Consensus 122 ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 201 (364)
T cd05599 122 YIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVG 201 (364)
T ss_pred eEeccCCHHHeEECCCCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhccccccccccc
Confidence 99999994300 001258
Q ss_pred ccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHH
Q 040540 545 TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMD 624 (669)
Q Consensus 545 t~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (669)
|+.|+|||++....++.++|||||||++|||++|+.||..... ......+... .... .. +....
T Consensus 202 t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~--~~~~~~i~~~-~~~~--~~-----------~~~~~ 265 (364)
T cd05599 202 TPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNP--QETYRKIINW-KETL--QF-----------PDEVP 265 (364)
T ss_pred CccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCH--HHHHHHHHcC-CCcc--CC-----------CCCCC
Confidence 9999999999888899999999999999999999999975321 1111111100 0000 00 00111
Q ss_pred HHHHHHHHHhhcccCCCCCCCC---HHHHHH
Q 040540 625 CLLSIMDLALDCCMESPDKRMH---MTDAAA 652 (669)
Q Consensus 625 ~~~~~~~l~~~c~~~~P~~Rps---~~~v~~ 652 (669)
....+.+++.+|+. +|.+|++ +.|+++
T Consensus 266 ~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~ 295 (364)
T cd05599 266 LSPEAKDLIKRLCC-EAERRLGNNGVNEIKS 295 (364)
T ss_pred CCHHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence 23456788999986 9999997 888765
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-22 Score=198.57 Aligned_cols=186 Identities=22% Similarity=0.325 Sum_probs=140.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++......++||||+++|+|.+++++. ..+++..+..++.+++.|+.|||+ .+
T Consensus 54 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~----~~ 128 (272)
T cd06629 54 ALRSEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTY-GRFEEQLVRFFTEQVLEGLAYLHS----KG 128 (272)
T ss_pred HHHHHHHHHHhcCCCCcceEEEEeccCCceEEEEecCCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhh----CC
Confidence 4667889999999999999999999889999999999999999999864 468888888999999999999995 47
Q ss_pred eeecCCCCcc---------------------------cccccccccccCccccccCCC--cCccccchhhHHHHHHHHhC
Q 040540 528 IIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGI--VSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 528 i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gvil~el~tg 578 (669)
++|+|+++.. ......|+..|+|||...... ++.++||||||+++||+++|
T Consensus 129 i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g 208 (272)
T cd06629 129 ILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAG 208 (272)
T ss_pred eeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhC
Confidence 9999988431 001123778899999887644 78999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ........ .......+.+.. ..+.+..+.+++.+||..+|++||+|.+|++
T Consensus 209 ~~p~~~~~~----~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 268 (272)
T cd06629 209 RRPWSDEEA----IAAMFKLG-NKRSAPPIPPDV---------SMNLSPVALDFLNACFTINPDNRPTARELLQ 268 (272)
T ss_pred CCCCcCcch----HHHHHHhh-ccccCCcCCccc---------cccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence 999854211 11111100 000011111111 1123456789999999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-22 Score=206.80 Aligned_cols=169 Identities=20% Similarity=0.176 Sum_probs=130.1
Q ss_pred hhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCC
Q 040540 455 VLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGE 534 (669)
Q Consensus 455 ~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~ 534 (669)
.++.++|+|++++++.+...+..++||||+++|+|..++... ..+.+.....++.|+++||+|||. .+|+|+|+|
T Consensus 49 ~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~lH~----~~ivH~Dlk 123 (321)
T cd05603 49 LLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRE-RCFLEPRARFYAAEVASAIGYLHS----LNIIYRDLK 123 (321)
T ss_pred HHHhCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CCeEeccCC
Confidence 467789999999999998888999999999999999988753 457778888899999999999994 479999998
Q ss_pred Ccc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCC
Q 040540 535 DSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589 (669)
Q Consensus 535 ~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~ 589 (669)
+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||.... .
T Consensus 124 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~ 201 (321)
T cd05603 124 PENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD--V 201 (321)
T ss_pred HHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC--H
Confidence 430 0112348999999999988889999999999999999999999996531 1
Q ss_pred ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 590 MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
..+...+. .... . .+......+.+++.+|++.||.+||++.
T Consensus 202 ~~~~~~i~---~~~~------~---------~~~~~~~~~~~li~~~l~~~p~~R~~~~ 242 (321)
T cd05603 202 SQMYDNIL---HKPL------Q---------LPGGKTVAACDLLVGLLHKDQRRRLGAK 242 (321)
T ss_pred HHHHHHHh---cCCC------C---------CCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence 11111111 1100 0 0112234578999999999999999764
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-22 Score=200.25 Aligned_cols=182 Identities=19% Similarity=0.264 Sum_probs=140.6
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.+.|+|++++++++...+..++++||+++++|.+++.. ..+++.+...++.+++.|++|+|. .+
T Consensus 62 ~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~----~~ 135 (285)
T cd06648 62 LLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLAVLKALSFLHA----QG 135 (285)
T ss_pred HHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 356788889999999999999998888889999999999999999976 457888999999999999999994 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......|+..|+|||...+..++.++|||||||++|||++|+.||
T Consensus 136 i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~ 215 (285)
T cd06648 136 VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPY 215 (285)
T ss_pred eecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCC
Confidence 9999988431 011124788999999998888999999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... ......-+....+. .+. ........+.+++.+||..+|++||++.++++
T Consensus 216 ~~~~--~~~~~~~~~~~~~~--------~~~-------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~ 268 (285)
T cd06648 216 FNEP--PLQAMKRIRDNLPP--------KLK-------NLHKVSPRLRSFLDRMLVRDPAQRATAAELLN 268 (285)
T ss_pred cCCC--HHHHHHHHHhcCCC--------CCc-------ccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence 6421 11111111111110 000 01123356789999999999999999999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-22 Score=202.98 Aligned_cols=183 Identities=23% Similarity=0.261 Sum_probs=140.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++++......++||||++ |++.+.+......+++.++..++.+++.|+.|||. .+
T Consensus 71 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----~~ 145 (317)
T cd06635 71 DIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHS----HN 145 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 46678899999999999999999998888999999997 58888886656678999999999999999999995 47
Q ss_pred eeecCCCCcc---------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 528 IIHCEGEDSV---------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 528 i~h~d~~~~~---------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
++|+|+++.. ......|+..|+|||++. .+.++.++|||||||++|||++|+.||.
T Consensus 146 i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~ 225 (317)
T cd06635 146 MIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF 225 (317)
T ss_pred cccCCCCcccEEECCCCCEEEecCCCccccCCcccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence 9999988541 011224788999999873 4568899999999999999999999986
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
.... ......+.....+. . ........+.+++.+||+.+|.+||++.+|++.
T Consensus 226 ~~~~-~~~~~~~~~~~~~~---------~--------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~ 277 (317)
T cd06635 226 NMNA-MSALYHIAQNESPT---------L--------QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKH 277 (317)
T ss_pred CccH-HHHHHHHHhccCCC---------C--------CCccccHHHHHHHHHHccCCcccCcCHHHHHhC
Confidence 5311 11111111111100 0 011233457899999999999999999999874
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-22 Score=199.83 Aligned_cols=199 Identities=17% Similarity=0.140 Sum_probs=140.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.+++.++|+|++++++.+......++||||++++.+..++.. ...+++..+..++.++++|++|||. .+
T Consensus 46 ~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~ql~~~l~~LH~----~~ 120 (286)
T cd07847 46 IALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKN-PRGVPEHLIKKIIWQTLQAVNFCHK----HN 120 (286)
T ss_pred HHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCccHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 456789999999999999999999988889999999999888887764 3458999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......++..|+|||++.+ ..++.++|||||||++|||+||+.|
T Consensus 121 i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p 200 (286)
T cd07847 121 CIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPL 200 (286)
T ss_pred ceecCCChhhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCC
Confidence 9999988431 0012246788999998866 4578999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHH---hCCC--------Cc-cccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVKE---SLPH--------RL-SEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~---~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|....... .+....+. ..+. .. .....+..................+.+++.+||+.+|++||++.|
T Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e 279 (286)
T cd07847 201 WPGKSDVD-QLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEE 279 (286)
T ss_pred CCCCChHH-HHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHH
Confidence 97533211 11111110 0000 00 000000000000000001123466889999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
++.
T Consensus 280 il~ 282 (286)
T cd07847 280 LLE 282 (286)
T ss_pred Hhc
Confidence 874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-22 Score=201.68 Aligned_cols=183 Identities=19% Similarity=0.251 Sum_probs=140.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++.+...+..++++||+++++|.+++.. ..+++.....++.+++.|+.|||. .+
T Consensus 64 ~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~----~~ 137 (297)
T cd06659 64 LLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ--TRLNEEQIATVCESVLQALCYLHS----QG 137 (297)
T ss_pred HHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 455788889999999999999999888899999999999999998864 347899999999999999999994 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......|+..|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 138 ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~ 217 (297)
T cd06659 138 VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPY 217 (297)
T ss_pred eecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 9999988431 111234888999999998888999999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
.... .......+....+... . ........+.+++.+|++.+|++||+++++++.
T Consensus 218 ~~~~--~~~~~~~~~~~~~~~~--------~-------~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~ 271 (297)
T cd06659 218 FSDS--PVQAMKRLRDSPPPKL--------K-------NAHKISPVLRDFLERMLTREPQERATAQELLDH 271 (297)
T ss_pred CCCC--HHHHHHHHhccCCCCc--------c-------ccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence 6422 1111111111111000 0 011123456789999999999999999999873
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-22 Score=209.76 Aligned_cols=174 Identities=20% Similarity=0.214 Sum_probs=135.7
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
....|-.++.-. +||.++.++++++..+..+.||||+.||++..+.+. ..+++....-|+..|+-||+|||+ +
T Consensus 414 ~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~--~~F~e~rarfyaAev~l~L~fLH~----~ 487 (694)
T KOG0694|consen 414 SLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHIHT--DVFSEPRARFYAAEVVLGLQFLHE----N 487 (694)
T ss_pred HHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEecCCCcEEEEEec--ccccHHHHHHHHHHHHHHHHHHHh----c
Confidence 344455555444 699999999999999999999999999996666653 457888888899999999999995 5
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+||+||+|-. ....+.+||+.|||||++.+..|+..+|+|||||++|||++|..|
T Consensus 488 ~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~P 567 (694)
T KOG0694|consen 488 GIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESP 567 (694)
T ss_pred CceeeecchhheEEcccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCC
Confidence 8999999811 234556899999999999999999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|.+..+++ +.+ . +..+.. .+|...+.+++.++.+.+.++|.+|..+
T Consensus 568 F~gddEee--~Fd-----------s-----I~~d~~--~yP~~ls~ea~~il~~ll~k~p~kRLG~ 613 (694)
T KOG0694|consen 568 FPGDDEEE--VFD-----------S-----IVNDEV--RYPRFLSKEAIAIMRRLLRKNPEKRLGS 613 (694)
T ss_pred CCCCCHHH--HHH-----------H-----HhcCCC--CCCCcccHHHHHHHHHHhccCcccccCC
Confidence 97632221 111 1 111111 1233455677899999999999999866
|
|
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-22 Score=197.54 Aligned_cols=186 Identities=18% Similarity=0.239 Sum_probs=142.2
Q ss_pred cCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+..++.++|+|++++++.+.. ....+++|||+++++|.+++... ...+++.....++.++++|++|+|..
T Consensus 45 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~ 124 (265)
T cd08217 45 QLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNR 124 (265)
T ss_pred HHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 45668889999999999999987653 34568999999999999999753 45789999999999999999999943
Q ss_pred C-CCCCeeecCCCCcc-----------------------c--ccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 523 H-SSAPIIHCEGEDSV-----------------------T--QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 523 ~-~~~~i~h~d~~~~~-----------------------~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+ ...+++|+|+++.. . .....|+..|+|||+.....++.++||||||+++|||+
T Consensus 125 ~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~ 204 (265)
T cd08217 125 SDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELC 204 (265)
T ss_pred ccccCcceecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHH
Confidence 1 14689999988430 0 11235789999999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||.... ...+.+.+...... .+ +......+.+++.+|++.+|++||++.+|++
T Consensus 205 ~g~~p~~~~~--~~~~~~~~~~~~~~--------~~---------~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~ 261 (265)
T cd08217 205 ALSPPFTARN--QLQLASKIKEGKFR--------RI---------PYRYSSELNEVIKSMLNVDPDKRPSTEELLQ 261 (265)
T ss_pred HCCCcccCcC--HHHHHHHHhcCCCC--------CC---------ccccCHHHHHHHHHHccCCcccCCCHHHHhh
Confidence 9999987532 22222222221110 01 1123456789999999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-22 Score=210.63 Aligned_cols=132 Identities=21% Similarity=0.266 Sum_probs=115.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|++++++++.+......++||||+++|+|.+++.+. ..+++.....++.+++.||+|||. .+
T Consensus 47 ~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH~----~g 121 (363)
T cd05628 47 HIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK-DTLTEEETQFYIAETVLAIDSIHQ----LG 121 (363)
T ss_pred HHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4556888899999999999999999888999999999999999999754 468899999999999999999994 48
Q ss_pred eeecCCCCcc--------------c----------------------------------------------ccccccccc
Q 040540 528 IIHCEGEDSV--------------T----------------------------------------------QTTTMATIG 547 (669)
Q Consensus 528 i~h~d~~~~~--------------~----------------------------------------------~~~~~gt~~ 547 (669)
|+|||+|+.. . ....+||+.
T Consensus 122 ivHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~ 201 (363)
T cd05628 122 FIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPD 201 (363)
T ss_pred eEecCCCHHHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCcc
Confidence 9999998420 0 012368999
Q ss_pred cCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 548 YMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 548 y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 202 Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~ 238 (363)
T cd05628 202 YIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCS 238 (363)
T ss_pred ccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCC
Confidence 9999999888899999999999999999999999965
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-22 Score=201.24 Aligned_cols=185 Identities=21% Similarity=0.248 Sum_probs=137.1
Q ss_pred ccCchhhhhhccc-cccccceecccccccc------ccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhh
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSAL 516 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l 516 (669)
..+..|+.++.++ .|+|++++++.+.... ..++||||+++++|.+++... +..+++.....++.|+++|+
T Consensus 47 ~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al 126 (275)
T cd06608 47 EEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGL 126 (275)
T ss_pred HHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 3567788888888 6999999999986543 478999999999999998652 35688999999999999999
Q ss_pred hhhhcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccC-----CCcCccccch
Q 040540 517 EYLRHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-----GIVSAKCDVY 566 (669)
Q Consensus 517 ~~lh~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~ 566 (669)
.|||. .+++|+|+++.. ......|+..|+|||++.. ..++.++|||
T Consensus 127 ~~lH~----~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~ 202 (275)
T cd06608 127 AYLHE----NKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVW 202 (275)
T ss_pred HHHhc----CCcccCCCCHHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHH
Confidence 99994 479999987420 0112247888999998753 3477899999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
||||++|||+||+.||..... ...+..... .. .+.+ ..+......+.+++.+||..||++|||
T Consensus 203 slG~il~~l~~g~~p~~~~~~-~~~~~~~~~-~~--------~~~~-------~~~~~~~~~~~~li~~~l~~dp~~Rpt 265 (275)
T cd06608 203 SLGITAIELADGKPPLCDMHP-MRALFKIPR-NP--------PPTL-------KSPENWSKKFNDFISECLIKNYEQRPF 265 (275)
T ss_pred HhHHHHHHHHhCCCCccccch-HHHHHHhhc-cC--------CCCC-------CchhhcCHHHHHHHHHHhhcChhhCcC
Confidence 999999999999999864221 111111110 00 0011 112234557889999999999999999
Q ss_pred HHHHHH
Q 040540 647 MTDAAA 652 (669)
Q Consensus 647 ~~~v~~ 652 (669)
+.|+++
T Consensus 266 ~~~ll~ 271 (275)
T cd06608 266 MEELLE 271 (275)
T ss_pred HHHHhc
Confidence 999975
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-22 Score=202.12 Aligned_cols=183 Identities=22% Similarity=0.263 Sum_probs=134.4
Q ss_pred Cchhhhhhccc-cccccceeccccccc-----cccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhh
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+..|...+.++ +|+|++++++++... ...++||||+++|+|.++++. ....+++.....++.+++.|+.||
T Consensus 65 ~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~l 144 (291)
T cd06639 65 IEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHL 144 (291)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44677778777 799999999988643 357899999999999998863 344688999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccCC-----CcCccccchhhH
Q 040540 520 RHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-----IVSAKCDVYSYG 569 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~s~G 569 (669)
|. .+++|+|+++.. ......|+..|+|||++... .++.++||||||
T Consensus 145 H~----~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG 220 (291)
T cd06639 145 HN----NRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLG 220 (291)
T ss_pred Hh----CCeeccCCCHHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHH
Confidence 94 479999988430 01122477889999987543 267899999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|++|||++|+.||...... ..+..+.+ ..+. ...+ +......+.+++.+||+.+|++||++.|
T Consensus 221 vi~~el~~g~~p~~~~~~~-~~~~~~~~-~~~~---~~~~------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ 283 (291)
T cd06639 221 ITAIELGDGDPPLFDMHPV-KTLFKIPR-NPPP---TLLH------------PEKWCRSFNHFISQCLIKDFEARPSVTH 283 (291)
T ss_pred HHHHHHhhCCCCCCCCcHH-HHHHHHhc-CCCC---CCCc------------ccccCHHHHHHHHHHhhcChhhCcCHHH
Confidence 9999999999998753211 11111111 1010 0000 1123345789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 284 il~ 286 (291)
T cd06639 284 LLE 286 (291)
T ss_pred Hhc
Confidence 975
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-22 Score=200.64 Aligned_cols=197 Identities=18% Similarity=0.143 Sum_probs=138.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|+..+..++|+|++++++.+..+...++||||++ +++.+++.... ..+++.....++.|+++||+|||.
T Consensus 45 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---- 119 (285)
T cd07861 45 TAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHS---- 119 (285)
T ss_pred HHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHh----
Confidence 45678899999999999999999998889999999997 68998886522 468899999999999999999994
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+++|+|+++.. ......+++.|+|||++.+. .++.++|||||||++|||+||+
T Consensus 120 ~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~ 199 (285)
T cd07861 120 RRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKK 199 (285)
T ss_pred CCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCC
Confidence 479999998431 00122467899999987653 4788999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCC---Cc---------cccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPH---RL---------SEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.||...... ..+....+..... .+ ...++...... ..........++.+++.+|++.||++|||+
T Consensus 200 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~ 276 (285)
T cd07861 200 PLFHGDSEI-DQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGS--LRSAVKNLDEDGLDLLEKMLIYDPAKRISA 276 (285)
T ss_pred CCCCCCCHH-HHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcch--hHHhcCCCCHHHHHHHHHHhcCChhhCCCH
Confidence 998652210 0111111100000 00 00000000000 000011234567899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.+|++
T Consensus 277 ~~ll~ 281 (285)
T cd07861 277 KKALN 281 (285)
T ss_pred HHHhc
Confidence 99874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-22 Score=204.38 Aligned_cols=173 Identities=19% Similarity=0.143 Sum_probs=131.7
Q ss_pred chhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 450 DSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 450 ~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
..|...+... +|++++.+++++...+..++||||+++|+|.+++... ..+++..+..++.|+++|++|||. .++
T Consensus 48 ~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~~i 122 (323)
T cd05616 48 MVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQV-GRFKEPHAVFYAAEIAIGLFFLHS----KGI 122 (323)
T ss_pred HHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CCE
Confidence 3455555555 5888888988888888899999999999999998754 458889999999999999999994 479
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||.
T Consensus 123 vHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~ 202 (323)
T cd05616 123 IYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFE 202 (323)
T ss_pred EecCCCHHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCC
Confidence 999998430 0112348999999999998889999999999999999999999997
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.... ..+...+..... . .+......+.+++.+|++.+|++|++.
T Consensus 203 ~~~~--~~~~~~i~~~~~---------~---------~p~~~s~~~~~li~~~l~~~p~~R~~~ 246 (323)
T cd05616 203 GEDE--DELFQSIMEHNV---------A---------YPKSMSKEAVAICKGLMTKHPGKRLGC 246 (323)
T ss_pred CCCH--HHHHHHHHhCCC---------C---------CCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence 5321 112221111100 0 011233457899999999999999985
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-23 Score=202.73 Aligned_cols=257 Identities=21% Similarity=0.184 Sum_probs=144.6
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccC-CcCCccCCccccCCccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAY-NKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ 129 (669)
...+.|+|..|+|+.+.+.+|+.++.|+.||||+|.|+.+-|++|..++.|..|.+.+ |+|+...-+.|++|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4566777777777766666777788888888888877777777777777776666555 777755456777777888777
Q ss_pred ccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCc------------ccCCccccCCCCC
Q 040540 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ------------GQIPTEIGSLQNL 197 (669)
Q Consensus 130 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~------------~~~p~~~~~l~~L 197 (669)
+.-|++.-.....|..|++|..|.+..|.+...--..|..+..++++.+..|.+. ...|..++.++-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 7777777666677777777777777777776444446777777777777666621 1223333333332
Q ss_pred CEEEccCCCCCCCCCccccC-CCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCC
Q 040540 198 KNLDLADNKLSGLIPPTIFN-ISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLG 276 (669)
Q Consensus 198 ~~L~l~~N~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls 276 (669)
.-..+.++++....+..|.. +..+..--.+.+...+.-|...+..+++|++|+|++|++++.-+.+|.....++.|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 22222222222111111110 00110000111112223344444445555555555555555555555555555555555
Q ss_pred CCCccccCccccCCCCCCCEEEccCCccccC
Q 040540 277 FNSFSGHIPNTFGNLRHLSVLNVMMNNLTTE 307 (669)
Q Consensus 277 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 307 (669)
.|++...-...|.++..|+.|+|..|+++..
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 5555433344455555555555555555443
|
|
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-22 Score=200.72 Aligned_cols=197 Identities=21% Similarity=0.192 Sum_probs=137.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..+++++|+|++++++++......++||||++ ++|.+++... ...+++.....++.++++|++|||. .
T Consensus 45 ~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~----~ 119 (284)
T cd07860 45 TAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHS----H 119 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 46678999999999999999999998889999999996 6899988653 3468899999999999999999994 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCC-cCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+++.. ......++..|+|||+..+.. ++.++|||||||++|||+||+.
T Consensus 120 ~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~ 199 (284)
T cd07860 120 RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA 199 (284)
T ss_pred CeecCCCCHHHEEECCCCCEEEeeccchhhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 79999988431 001123677899999876644 6889999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCcccccccc---ccchhhhh---------hhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTN---LVREEQAF---------SAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
||..... ...+.+..+..-... +.+.+. +......+ .........+.+++.+|++.||++||+++
T Consensus 200 p~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~ 276 (284)
T cd07860 200 LFPGDSE-IDQLFRIFRTLGTPD--EVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAK 276 (284)
T ss_pred CCCCCCH-HHHHHHHHHHhCCCC--hhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHH
Confidence 9864221 111111111110000 000000 00000000 00111234567999999999999999999
Q ss_pred HHHH
Q 040540 649 DAAA 652 (669)
Q Consensus 649 ~v~~ 652 (669)
++++
T Consensus 277 ~~l~ 280 (284)
T cd07860 277 AALA 280 (284)
T ss_pred HHhc
Confidence 9874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=213.05 Aligned_cols=183 Identities=19% Similarity=0.241 Sum_probs=137.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.+++... ..+++.....++.|++.||+|||. .+
T Consensus 47 ~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~ql~~aL~~LH~----~g 121 (377)
T cd05629 47 HVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKY-DTFSEDVTRFYMAECVLAIEAVHK----LG 121 (377)
T ss_pred HHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4567889999999999999999999999999999999999999999753 457888888899999999999994 47
Q ss_pred eeecCCCCcc--------------c-c-----------------------------------------------------
Q 040540 528 IIHCEGEDSV--------------T-Q----------------------------------------------------- 539 (669)
Q Consensus 528 i~h~d~~~~~--------------~-~----------------------------------------------------- 539 (669)
|+|||+|+.. . .
T Consensus 122 ivHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (377)
T cd05629 122 FIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNR 201 (377)
T ss_pred eeccCCCHHHEEECCCCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcc
Confidence 9999998430 0 0
Q ss_pred ----cccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccch
Q 040540 540 ----TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVRE 615 (669)
Q Consensus 540 ----~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 615 (669)
...+||+.|+|||++.+..++.++|||||||++|||+||+.||....... .+..... ..... .
T Consensus 202 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~--~~~~~---~------- 268 (377)
T cd05629 202 RLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHE-TYRKIIN--WRETL---Y------- 268 (377)
T ss_pred cccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCHHH-HHHHHHc--cCCcc---C-------
Confidence 01358999999999988889999999999999999999999996532111 0111100 00000 0
Q ss_pred hhhhhhhHHHHHHHHHHHhhcccCCCCCC---CCHHHHHH
Q 040540 616 EQAFSAKMDCLLSIMDLALDCCMESPDKR---MHMTDAAA 652 (669)
Q Consensus 616 ~~~~~~~~~~~~~~~~l~~~c~~~~P~~R---ps~~~v~~ 652 (669)
++........+.+++.+|+. +|.+| +++.|+++
T Consensus 269 ---~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~ 304 (377)
T cd05629 269 ---FPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKS 304 (377)
T ss_pred ---CCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhc
Confidence 00011223457899999997 67665 58888876
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-22 Score=204.11 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=141.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++.+......++||||+++++|.+++... ..+++.....++.++++|+.|+|. .+
T Consensus 47 ~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~----~~ 121 (305)
T cd05609 47 QVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNI-GALPVDMARMYFAETVLALEYLHN----YG 121 (305)
T ss_pred HHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567888999999999999999998888899999999999999999754 458888888999999999999995 47
Q ss_pred eeecCCCCccc---------------c-------------------------cccccccccCccccccCCCcCccccchh
Q 040540 528 IIHCEGEDSVT---------------Q-------------------------TTTMATIGYMAPEYGSEGIVSAKCDVYS 567 (669)
Q Consensus 528 i~h~d~~~~~~---------------~-------------------------~~~~gt~~y~aPE~~~~~~~~~~~Dv~s 567 (669)
++|+|+++... . ....|+..|+|||.+....++.++||||
T Consensus 122 i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s 201 (305)
T cd05609 122 IVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWA 201 (305)
T ss_pred ccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHH
Confidence 99999884310 0 0123677899999998888999999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|||++|||++|+.||.....+ ++......... ..+.. ....+..+.+++.+||+.+|++||++
T Consensus 202 lG~vl~el~~g~~pf~~~~~~-----~~~~~~~~~~~---~~~~~---------~~~~~~~~~~li~~~l~~~P~~R~~~ 264 (305)
T cd05609 202 MGIILYEFLVGCVPFFGDTPE-----ELFGQVISDDI---EWPEG---------DEALPADAQDLISRLLRQNPLERLGT 264 (305)
T ss_pred HHHHHHHHHhCCCCCCCCCHH-----HHHHHHHhccc---CCCCc---------cccCCHHHHHHHHHHhccChhhccCc
Confidence 999999999999998642211 11111100000 00000 01234457899999999999999997
Q ss_pred HHHHHHHHH
Q 040540 648 TDAAAKLKK 656 (669)
Q Consensus 648 ~~v~~~l~~ 656 (669)
.++.+.|+.
T Consensus 265 ~~~~~ll~~ 273 (305)
T cd05609 265 GGAFEVKQH 273 (305)
T ss_pred cCHHHHHhC
Confidence 766666654
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-22 Score=214.02 Aligned_cols=183 Identities=19% Similarity=0.239 Sum_probs=137.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|+|++++++.+...+..++||||+++|+|.+++... ..++......++.|++.|++|||. .+
T Consensus 47 ~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH~----~~ 121 (376)
T cd05598 47 HVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRL-GIFEEDLARFYIAELTCAIESVHK----MG 121 (376)
T ss_pred HHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567899999999999999999999999999999999999999999754 457777888899999999999995 47
Q ss_pred eeecCCCCcc--------------cc------------------------------------------------------
Q 040540 528 IIHCEGEDSV--------------TQ------------------------------------------------------ 539 (669)
Q Consensus 528 i~h~d~~~~~--------------~~------------------------------------------------------ 539 (669)
|+|||+|+.. ..
T Consensus 122 ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (376)
T cd05598 122 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLA 201 (376)
T ss_pred eEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccc
Confidence 9999998431 00
Q ss_pred cccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhh
Q 040540 540 TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAF 619 (669)
Q Consensus 540 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (669)
...+||+.|||||++.+..++.++|||||||++|||++|+.||....... ....+... .... . .
T Consensus 202 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~--~~~~i~~~-~~~~---~----------~ 265 (376)
T cd05598 202 HSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAE--TQLKVINW-ETTL---H----------I 265 (376)
T ss_pred cccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHH--HHHHHhcc-Cccc---c----------C
Confidence 01358999999999998889999999999999999999999997532111 11100000 0000 0 0
Q ss_pred hhhHHHHHHHHHHHhhcccCCCCCCC---CHHHHHH
Q 040540 620 SAKMDCLLSIMDLALDCCMESPDKRM---HMTDAAA 652 (669)
Q Consensus 620 ~~~~~~~~~~~~l~~~c~~~~P~~Rp---s~~~v~~ 652 (669)
+........+.+++.+|+ .+|.+|+ ++.|+++
T Consensus 266 ~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~ 300 (376)
T cd05598 266 PSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKA 300 (376)
T ss_pred CCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhC
Confidence 001122345667787765 5999999 7888875
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-22 Score=197.89 Aligned_cols=181 Identities=19% Similarity=0.259 Sum_probs=134.4
Q ss_pred cCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|+.+++.++|+|++++++.+.. ....++++||+++++|.+++... ..+++.....++.++++|++|||.
T Consensus 50 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~LH~---- 124 (266)
T cd06651 50 ALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAY-GALTESVTRKYTRQILEGMSYLHS---- 124 (266)
T ss_pred HHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 46678899999999999999988754 35668999999999999999753 357888899999999999999994
Q ss_pred CCeeecCCCCcc--------------c--------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDSV--------------T--------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------~--------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+++.. . .....|+..|+|||...+..++.++|||||||++||+++
T Consensus 125 ~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~ 204 (266)
T cd06651 125 NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLT 204 (266)
T ss_pred CCeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHH
Confidence 479999988320 0 011237788999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|+.||..... ... +....... ..+.+ +......+.+++ +||..+|++||+|+||++
T Consensus 205 g~~pf~~~~~----~~~-~~~~~~~~----~~~~~---------~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~ 260 (266)
T cd06651 205 EKPPWAEYEA----MAA-IFKIATQP----TNPQL---------PSHISEHARDFL-GCIFVEARHRPSAEELLR 260 (266)
T ss_pred CCCCccccch----HHH-HHHHhcCC----CCCCC---------chhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence 9999875321 111 11110000 01111 112233455666 789899999999999975
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=195.74 Aligned_cols=186 Identities=20% Similarity=0.283 Sum_probs=142.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++.+...+..++||||+++++|.+++.+. ..+++.....++.++++|+.|||. .
T Consensus 48 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~ql~~al~~LH~----~ 122 (268)
T cd06630 48 EALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKY-GAFKEAVIINYTEQLLRGLSYLHE----N 122 (268)
T ss_pred HHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEeccCCCcHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 45667899999999999999999999888899999999999999999753 467888999999999999999995 4
Q ss_pred CeeecCCCCccc------------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSVT------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~~------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++... .....|+..|+|||+..+..++.++||||+|++++||+
T Consensus 123 ~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~ 202 (268)
T cd06630 123 QIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMA 202 (268)
T ss_pred CeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHH
Confidence 899999884210 00124677899999998888899999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||...... .............. .+ ..+......+.+++.+|+..+|++||++.|+++
T Consensus 203 ~g~~p~~~~~~~--~~~~~~~~~~~~~~----~~---------~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~ 263 (268)
T cd06630 203 TAKPPWNAEKHS--NHLALIFKIASATT----AP---------SIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK 263 (268)
T ss_pred hCCCCCCCCCCc--chHHHHHHHhccCC----CC---------CCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence 999998642211 11111111000000 00 012334566789999999999999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-22 Score=212.38 Aligned_cols=133 Identities=19% Similarity=0.266 Sum_probs=114.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++.+......++|||||++|+|.+++.+. ..+++.....++.|++.|++|||. .
T Consensus 46 ~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~al~~lH~----~ 120 (382)
T cd05625 46 AHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM-GIFPEDLARFYIAELTCAVESVHK----M 120 (382)
T ss_pred HHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 35667899999999999999999999999999999999999999999754 457777888899999999999995 4
Q ss_pred CeeecCCCCcc--------------c------------------------------------------------------
Q 040540 527 PIIHCEGEDSV--------------T------------------------------------------------------ 538 (669)
Q Consensus 527 ~i~h~d~~~~~--------------~------------------------------------------------------ 538 (669)
+|+|||+|+.. .
T Consensus 121 ~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (382)
T cd05625 121 GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQH 200 (382)
T ss_pred CeecCCCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhcccc
Confidence 79999998430 0
Q ss_pred ----ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 539 ----QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 539 ----~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
..+.+||+.|+|||++.+..++.++||||+||++|||++|+.||..
T Consensus 201 ~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~ 250 (382)
T cd05625 201 QRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLA 250 (382)
T ss_pred ccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCC
Confidence 0112589999999999888899999999999999999999999975
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-22 Score=196.47 Aligned_cols=183 Identities=19% Similarity=0.229 Sum_probs=140.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++++......++++||+++++|.+++.+. ..+++.....++.++++|++|||. .
T Consensus 47 ~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~----~ 121 (258)
T cd06632 47 KQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKY-GSFPEPVIRLYTRQILLGLEYLHD----R 121 (258)
T ss_pred HHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEecCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 45677899999999999999999998888899999999999999999754 357888999999999999999994 4
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCC-cCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......|+..|+|||...... ++.++|+|||||++|||++|+.|
T Consensus 122 ~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~p 201 (258)
T cd06632 122 NTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPP 201 (258)
T ss_pred CcccCCCCHHHEEECCCCCEEEccCccceeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCC
Confidence 79999988431 011234788899999887766 89999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..... ......+.... ... .+ +......+.+++.+||+.+|++||++.++++
T Consensus 202 f~~~~~-~~~~~~~~~~~---~~~-~~-------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 254 (258)
T cd06632 202 WSQLEG-VAAVFKIGRSK---ELP-PI-------------PDHLSDEAKDFILKCLQRDPSLRPTAAELLE 254 (258)
T ss_pred cccCcH-HHHHHHHHhcc---cCC-Cc-------------CCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence 865321 11111111100 000 00 1123355688999999999999999999875
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-22 Score=199.85 Aligned_cols=199 Identities=22% Similarity=0.186 Sum_probs=139.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++..+...++||||++++.+.++.... ..+++.....++.++++|++|||. .+
T Consensus 46 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~----~~ 120 (286)
T cd07846 46 IAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYP-NGLDESRVRKYLFQILRGIEFCHS----HN 120 (286)
T ss_pred HHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4557889999999999999999999889999999999999998887643 348999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......|+..|+|||+..+ ..++.++|||||||++|||++|+.|
T Consensus 121 i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~ 200 (286)
T cd07846 121 IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPL 200 (286)
T ss_pred ccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCC
Confidence 9999988431 0011247788999998865 4478899999999999999999988
Q ss_pred CCcCCCCCccHHHHHH--HhCCCCccccc----------cccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVK--ESLPHRLSEVV----------DTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|..... ...+..... ........... .+..................+.+++.+||..+|++||+|.+
T Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~ 279 (286)
T cd07846 201 FPGDSD-IDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQ 279 (286)
T ss_pred CCCCch-HHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHH
Confidence 864211 000101000 00000000000 00000000000011234567889999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 280 il~ 282 (286)
T cd07846 280 LLH 282 (286)
T ss_pred Hhc
Confidence 875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-22 Score=183.59 Aligned_cols=186 Identities=21% Similarity=0.210 Sum_probs=142.9
Q ss_pred hhhhhhccc-cccccceecccccc----ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 451 SECEVLRNV-RHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 451 ~e~~~l~~l-~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+|++.-... .|+|||.+++.+.+ .....+|||.|+||.|+..+.+++ ..+.+.+...|+++|+.|+.|||
T Consensus 103 rEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH---- 178 (400)
T KOG0604|consen 103 REVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLH---- 178 (400)
T ss_pred hHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH----
Confidence 466655444 69999999998865 344568999999999999998754 46888899999999999999999
Q ss_pred CCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 525 SAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
+..|.|||+|+.. ...+.+-|+.|.|||++...+|+..+|+||+||++|-|+.
T Consensus 179 ~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLC 258 (400)
T KOG0604|consen 179 SMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLC 258 (400)
T ss_pred hcchhhccCChhheeeecCCCCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhc
Confidence 4589999999530 1112246899999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|-+||....... +..-+++.+..... .+..++|...+..+.+++.+.+..+|.+|.|+.+++.
T Consensus 259 GyPPFYS~hg~a--ispgMk~rI~~gqy----------~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~ 321 (400)
T KOG0604|consen 259 GYPPFYSNHGLA--ISPGMKRRIRTGQY----------EFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD 321 (400)
T ss_pred CCCcccccCCcc--CChhHHhHhhccCc----------cCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence 999997644321 11111111111100 1223468899999999999999999999999999875
|
|
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=197.53 Aligned_cols=197 Identities=17% Similarity=0.144 Sum_probs=141.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++++..+...++||||+ +++|.+++......+++.++..++.++++|++|||. .+
T Consensus 45 ~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~----~~ 119 (286)
T cd07832 45 QALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHA----NG 119 (286)
T ss_pred HHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4667889999999999999999998888999999999 999999997666678999999999999999999995 47
Q ss_pred eeecCCCCcc-----------------------c---ccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCC
Q 040540 528 IIHCEGEDSV-----------------------T---QTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~---~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
++|+|+++.. . .....|+..|+|||+..+. .++.++||||+||+++||+||+.
T Consensus 120 i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~ 199 (286)
T cd07832 120 IMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSP 199 (286)
T ss_pred eecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCc
Confidence 9999988420 0 1123578899999988654 46899999999999999999987
Q ss_pred CCCcCCCCCccHHHHHHHhCCC-------------CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPH-------------RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||.... ......++...... ....+..+.-... .......+....+.+++.+|+..+|.+||++
T Consensus 200 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~ 276 (286)
T cd07832 200 LFPGEN--DIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPI-PLEEIFPDASPEALDLLKGLLVYDPSKRLSA 276 (286)
T ss_pred CcCCCC--HHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcc-hHHHhCCCccHHHHHHHHHHhccChhhCCCH
Confidence 775421 11111111111100 0000000000000 0000011334678899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
+++++
T Consensus 277 ~~~l~ 281 (286)
T cd07832 277 AEALR 281 (286)
T ss_pred HHHhh
Confidence 99875
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-22 Score=190.91 Aligned_cols=180 Identities=21% Similarity=0.251 Sum_probs=143.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
-.+.+|+++|+.+.||||+.++..+.+.+...|||||..+|.|++++.+. ..+++.+...|++||..|+.|+|. .
T Consensus 98 vhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYaS~GeLYDYiSer-~~LsErEaRhfFRQIvSAVhYCHk----n 172 (668)
T KOG0611|consen 98 VHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYASGGELYDYISER-GSLSEREARHFFRQIVSAVHYCHK----N 172 (668)
T ss_pred HHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEecCCccHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHhh----c
Confidence 34668999999999999999999999999999999999999999999864 558999999999999999999994 4
Q ss_pred CeeecCCCCc------------------------ccccccccccccCccccccCCCcC-ccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVS-AKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|||+|-. ....+++|++-|..||+..+..|. +.+|.||+||+||-++.|..|
T Consensus 173 rVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMP 252 (668)
T KOG0611|consen 173 RVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMP 252 (668)
T ss_pred cceecccchhheeecCCCCeeeeccchhhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccc
Confidence 8999998821 123456899999999999988765 789999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|++. +...+++-++. ... ..| +-+.++.-+|..++..+|++|-|..||+.
T Consensus 253 FDG~--Dhk~lvrQIs~---GaY---rEP-------------~~PSdA~gLIRwmLmVNP~RRATieDiAs 302 (668)
T KOG0611|consen 253 FDGR--DHKRLVRQISR---GAY---REP-------------ETPSDASGLIRWMLMVNPERRATIEDIAS 302 (668)
T ss_pred cCCc--hHHHHHHHhhc---ccc---cCC-------------CCCchHHHHHHHHHhcCcccchhHHHHhh
Confidence 9863 22222221111 111 111 11233457888999999999999999975
|
|
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-21 Score=194.89 Aligned_cols=185 Identities=26% Similarity=0.480 Sum_probs=142.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCc-cCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF-LDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~-l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+..++|+|++++++.+...+..+++|||+++++|.+++...... +++.....++.+++.|++|||+.
T Consensus 46 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~--- 122 (258)
T smart00219 46 EEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK--- 122 (258)
T ss_pred HHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC---
Confidence 45667889999999999999999998888899999999999999999764433 89999999999999999999954
Q ss_pred CCeeecCCCCccc------------------------cc--ccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSVT------------------------QT--TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~~------------------------~~--~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+++|+|+++... .. ...++..|+|||......++.++||||+|++++||++ |
T Consensus 123 -~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g 201 (258)
T smart00219 123 -NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLG 201 (258)
T ss_pred -CeeecccccceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCC
Confidence 799999985310 00 1125678999999988889999999999999999999 7
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
+.||... ....+.+.+....... .+...+..+.+++.+|+..+|++|||+.|+++.|
T Consensus 202 ~~p~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l 258 (258)
T smart00219 202 ESPYPGM--SNEEVLEYLKKGYRLP-----------------KPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL 258 (258)
T ss_pred CCCCCCC--CHHHHHHHHhcCCCCC-----------------CCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence 8887652 1112222222111000 0112345678999999999999999999998764
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-21 Score=206.81 Aligned_cols=198 Identities=20% Similarity=0.191 Sum_probs=137.9
Q ss_pred ccCchhhhhhccccccccceecccccccc-----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD-----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+..|+.+++.++|+|++++++.+..+. ..++|+||+. ++|.+++.. ...+++.....++.++++||+|||.
T Consensus 44 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH~ 121 (372)
T cd07853 44 KRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTELMQ-SDLHKIIVS-PQPLSSDHVKVFLYQILRGLKYLHS 121 (372)
T ss_pred HHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEeeccc-cCHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999987765 6789999997 688888864 3468899999999999999999994
Q ss_pred CCCCCCeeecCCCCcc--------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHH
Q 040540 522 GHSSAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLME 574 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~e 574 (669)
.+++|||+|+.. ......+|..|+|||++.+. .++.++|||||||++||
T Consensus 122 ----~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~e 197 (372)
T cd07853 122 ----AGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAE 197 (372)
T ss_pred ----CCeeCCCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHH
Confidence 479999998531 01122468899999998764 47899999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCCCccc-----------ccccccc---chhhhhhhhHHHHHHHHHHHhhcccCC
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPHRLSE-----------VVDTNLV---REEQAFSAKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~c~~~~ 640 (669)
|++|+.||..... ......+.........+ .+..... .....+....+....+.+++.+|++.|
T Consensus 198 l~~g~~pf~~~~~--~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~d 275 (372)
T cd07853 198 LLGRRILFQAQSP--IQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFD 275 (372)
T ss_pred HHcCCCCCCCCCH--HHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCC
Confidence 9999999965321 11111111100000000 0000000 000000011123456789999999999
Q ss_pred CCCCCCHHHHHH
Q 040540 641 PDKRMHMTDAAA 652 (669)
Q Consensus 641 P~~Rps~~~v~~ 652 (669)
|.+|||+.|+++
T Consensus 276 P~~R~t~~e~l~ 287 (372)
T cd07853 276 PDKRISAADALA 287 (372)
T ss_pred hhhCcCHHHHhc
Confidence 999999999986
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-22 Score=197.57 Aligned_cols=188 Identities=22% Similarity=0.231 Sum_probs=142.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC--CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH--NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~--~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+..++.++|+|++++++.+......++++||+++++|.++++.. ...+++.....++.+++.|++|||.
T Consensus 44 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~--- 120 (267)
T cd06610 44 DELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS--- 120 (267)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 45677888899999999999999998888999999999999999999753 2458888999999999999999994
Q ss_pred CCCeeecCCCCcc-----------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHH
Q 040540 525 SAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLME 574 (669)
Q Consensus 525 ~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~e 574 (669)
.+++|+|+++.. ......|+..|+|||++... .++.++|||||||++||
T Consensus 121 -~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~ 199 (267)
T cd06610 121 -NGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIE 199 (267)
T ss_pred -CCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHH
Confidence 479999988420 00112478899999998776 68999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|++|+.||...... ..+....... +....... .....+..+.+++.+||..||++||++.++++
T Consensus 200 l~~g~~p~~~~~~~-~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~ 263 (267)
T cd06610 200 LATGAAPYSKYPPM-KVLMLTLQND-PPSLETGA------------DYKKYSKSFRKMISLCLQKDPSKRPTAEELLK 263 (267)
T ss_pred HHhCCCCccccChh-hhHHHHhcCC-CCCcCCcc------------ccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 99999999753221 1122222111 11000000 01233456789999999999999999999875
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-22 Score=194.78 Aligned_cols=202 Identities=21% Similarity=0.281 Sum_probs=144.8
Q ss_pred ccccCchhhhhh--ccccccccceecccccccc----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhh
Q 040540 445 AFRSFDSECEVL--RNVRHRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 445 ~~~~~~~e~~~l--~~l~h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
..++|..|-.+. -.++|+||++++++-.... +.+||+||.++|+|.+||+. ..++|....+|+..+++||+|
T Consensus 245 ~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~--ntisw~~~cria~SmarGLa~ 322 (534)
T KOG3653|consen 245 EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLKA--NTISWNSLCRIAESMARGLAH 322 (534)
T ss_pred HHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHHh--ccccHHHHHHHHHHHHHHHHH
Confidence 345666665554 4679999999999876544 77899999999999999975 568999999999999999999
Q ss_pred hhcC-----CCCCCeeecCCCCc---------------------------ccccccccccccCccccccCCC------cC
Q 040540 519 LRHG-----HSSAPIIHCEGEDS---------------------------VTQTTTMATIGYMAPEYGSEGI------VS 560 (669)
Q Consensus 519 lh~~-----~~~~~i~h~d~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~~------~~ 560 (669)
||.. +-.++|+|||+|.. ......+||.+|||||++.+.. .-
T Consensus 323 LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Af 402 (534)
T KOG3653|consen 323 LHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAF 402 (534)
T ss_pred hcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHH
Confidence 9953 44589999999843 1123357999999999986632 22
Q ss_pred ccccchhhHHHHHHHHhCCCCCC--------cCCCC-------CccHHHHHHHhCCCCccccccccccchhhhhhhhHHH
Q 040540 561 AKCDVYSYGVLLMETFTRKRPTD--------EMFTG-------EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDC 625 (669)
Q Consensus 561 ~~~Dv~s~Gvil~el~tg~~p~~--------~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (669)
.+.||||+|.|+|||+++..-.+ -.+.. ...++..|.+. ...|.+.. .......
T Consensus 403 kr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~k-------K~RP~~p~----~W~~h~~ 471 (534)
T KOG3653|consen 403 KRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRK-------KQRPKIPD----AWRKHAG 471 (534)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhh-------ccCCCChh----hhhcCcc
Confidence 47899999999999999765332 11110 01122222111 00111111 1112345
Q ss_pred HHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 626 LLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 626 ~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
+..+.+.++.||..||+.|-|+.-|.+++.++..
T Consensus 472 ~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~ 505 (534)
T KOG3653|consen 472 MAVLCETIEECWDHDAEARLTAGCVEERMAELMM 505 (534)
T ss_pred HHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhc
Confidence 6778999999999999999999999998887753
|
|
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-22 Score=208.12 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=135.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++.+..+...++||||+++|+|.+++... .+++.....++.+++.||+|||. .+
T Consensus 89 ~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~--~~~~~~~~~~~~qil~aL~~LH~----~~ 162 (370)
T cd05621 89 FFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNY--DVPEKWAKFYTAEVVLALDAIHS----MG 162 (370)
T ss_pred HHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 3557888999999999999999999999999999999999999999753 47888888999999999999994 48
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCC----CcCccccchhhHHHHHHHHh
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEG----IVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~s~Gvil~el~t 577 (669)
|+|||+|+.. ......||+.|||||++.+. .++.++||||+||++|||+|
T Consensus 163 IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~ 242 (370)
T cd05621 163 LIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLV 242 (370)
T ss_pred eEecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHh
Confidence 9999999430 01133599999999988653 37889999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC--CCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK--RMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~--Rps~~~v~~ 652 (669)
|+.||...... ..+...+.... . + .++........+.+++.+|+..+|.+ ||++.|+++
T Consensus 243 G~~Pf~~~~~~-~~~~~i~~~~~-----~-----~-----~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~ 303 (370)
T cd05621 243 GDTPFYADSLV-GTYSKIMDHKN-----S-----L-----NFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQ 303 (370)
T ss_pred CCCCCCCCCHH-HHHHHHHhCCc-----c-----c-----CCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhc
Confidence 99999653210 01111111000 0 0 00111223455678888898755543 889999876
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=198.92 Aligned_cols=199 Identities=21% Similarity=0.203 Sum_probs=139.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++......++||||+ +|+|.+++......+++.....++.|+++||.|||. .+
T Consensus 48 ~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~----~~ 122 (298)
T cd07841 48 TALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHS----NW 122 (298)
T ss_pred HHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 3456888899999999999999999888899999999 899999998654468999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......++..|+|||.+.+ ..++.++|||||||++|||++|..|
T Consensus 123 i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~ 202 (298)
T cd07841 123 ILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPF 202 (298)
T ss_pred eeecCCChhhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCcc
Confidence 9999998531 0011235678999998755 4578999999999999999999777
Q ss_pred CCcCCCCCccHHHHHHHh-CCC--------CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKES-LPH--------RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..... ...+....... .+. ..........................+.+++.+||+.+|++|||++||++
T Consensus 203 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~ 281 (298)
T cd07841 203 LPGDSD-IDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE 281 (298)
T ss_pred ccCCcc-HHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence 654221 11111111100 000 00000000000000000011233567889999999999999999999987
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=194.45 Aligned_cols=186 Identities=23% Similarity=0.238 Sum_probs=145.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|+|++++++.+......+++|||+++++|.+++... ..+++.....++.++++|++|+|.. .
T Consensus 44 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lh~~---~ 119 (264)
T cd06623 44 KQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKV-GKIPEPVLAYIARQILKGLDYLHTK---R 119 (264)
T ss_pred HHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhcc---C
Confidence 45677888999999999999999999999999999999999999999754 5689999999999999999999951 5
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......|+..|+|||......++.++||||||+++|||+||+.|
T Consensus 120 ~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p 199 (264)
T cd06623 120 HIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFP 199 (264)
T ss_pred CCccCCCCHHHEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 79999988430 00123477899999999888899999999999999999999999
Q ss_pred CCcCCC-CCccHHHHHHHhCCCCccccccccccchhhhhhhhHH-HHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 582 TDEMFT-GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMD-CLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 582 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
|..... ....+..++...... .+ +.. .+..+.+++.+|+..+|++||++.++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~--------~~---------~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~ 256 (264)
T cd06623 200 FLPPGQPSFFELMQAICDGPPP--------SL---------PAEEFSPEFRDFISACLQKDPKKRPSAAELLQH 256 (264)
T ss_pred CccccccCHHHHHHHHhcCCCC--------CC---------CcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 876432 111222222211100 00 111 34567899999999999999999999873
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=195.45 Aligned_cols=186 Identities=23% Similarity=0.291 Sum_probs=141.1
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.+..|+..++.++|+|++++++.+......++|+||+++++|.+++... ..+++.....++.++++|+.|||.
T Consensus 43 ~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~---- 117 (264)
T cd06626 43 IKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHG-RILDEHVIRVYTLQLLEGLAYLHS---- 117 (264)
T ss_pred HHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCCcHHHHHhhc-CCCChHHHHHHHHHHHHHHHHHHH----
Confidence 345678899999999999999999988888899999999999999999854 457888899999999999999995
Q ss_pred CCeeecCCCCcc------------------------c-----ccccccccccCccccccCCC---cCccccchhhHHHHH
Q 040540 526 APIIHCEGEDSV------------------------T-----QTTTMATIGYMAPEYGSEGI---VSAKCDVYSYGVLLM 573 (669)
Q Consensus 526 ~~i~h~d~~~~~------------------------~-----~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gvil~ 573 (669)
.+++|+|+++.. . .....++..|+|||++.+.. ++.++||||||+++|
T Consensus 118 ~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~ 197 (264)
T cd06626 118 HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVL 197 (264)
T ss_pred CCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHH
Confidence 479999987320 0 00124678999999987765 889999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|+++|+.||..... .......+....+. . .+........+.+++.+||+.+|++||++.|++.
T Consensus 198 ~l~~g~~pf~~~~~-~~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~ 260 (264)
T cd06626 198 EMATGKRPWSELDN-EFQIMFHVGAGHKP--------P-------IPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQ 260 (264)
T ss_pred HHHhCCCCccCCcc-hHHHHHHHhcCCCC--------C-------CCcccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 99999999965321 11111111111000 0 0111223455679999999999999999999864
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=199.73 Aligned_cols=183 Identities=23% Similarity=0.237 Sum_probs=138.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++++......++||||+. |++.+++......+++.++..++.+++.|+.|||. .+
T Consensus 61 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~----~~ 135 (308)
T cd06634 61 DIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS----HN 135 (308)
T ss_pred HHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 45678899999999999999999988888999999997 68888886555668999999999999999999994 47
Q ss_pred eeecCCCCcc---------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 528 IIHCEGEDSV---------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 528 i~h~d~~~~~---------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
++|+|+++.. ......|+..|+|||.+. ...++.++|||||||++|||++|+.|+.
T Consensus 136 i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~ 215 (308)
T cd06634 136 MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF 215 (308)
T ss_pred cccCCCCHHhEEECCCCcEEECCcccceeecCcccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCc
Confidence 9999998431 111224788999999874 3457889999999999999999999986
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
.... ...+..+.....+. .. .......+.+++.+||+.+|++||++.++++.
T Consensus 216 ~~~~-~~~~~~~~~~~~~~---------~~--------~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~ 267 (308)
T cd06634 216 NMNA-MSALYHIAQNESPA---------LQ--------SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 267 (308)
T ss_pred cccH-HHHHHHHhhcCCCC---------cC--------cccccHHHHHHHHHHhhCCcccCCCHHHHhhC
Confidence 5321 11111111111100 00 11233457899999999999999999999864
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=195.47 Aligned_cols=194 Identities=19% Similarity=0.160 Sum_probs=137.0
Q ss_pred hhhhhhcccc-ccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 451 SECEVLRNVR-HRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 451 ~e~~~l~~l~-h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.|+..+.++. |+|++++++.+... +..++|+||++ |++.+++......+++.+...++.++++|++|||. .+
T Consensus 46 ~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~----~~ 120 (282)
T cd07831 46 REIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD-MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHR----NG 120 (282)
T ss_pred HHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC-ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 5677777775 99999999998876 78899999997 68988887655678999999999999999999995 47
Q ss_pred eeecCCCCcc-----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 528 IIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
++|+|+++.. ......++..|+|||+... ..++.++|||||||++|||++|+.||.
T Consensus 121 i~H~dl~p~ni~l~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~ 200 (282)
T cd07831 121 IFHRDIKPENILIKDDILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFP 200 (282)
T ss_pred ceecccCHHHEEEcCCCeEEEecccccccccCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCC
Confidence 9999988431 0112247888999997644 557889999999999999999999996
Q ss_pred cCCCCCccHHHHHHHhCCC------------CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 584 EMFTGEMSLRRWVKESLPH------------RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
.... .....+....... .......+...... ........+..+.+++.+||..+|++||++++++
T Consensus 201 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l 277 (282)
T cd07831 201 GTNE--LDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTG-LRKLLPNASAEGLDLLKKLLAYDPDERITAKQAL 277 (282)
T ss_pred CCCH--HHHHHHHHHHcCCCCHHHHHhhcccccccccCccccccc-HHHHcccccHHHHHHHHHHhccCcccccCHHHHh
Confidence 5321 1111222111110 00000000000000 0001123467789999999999999999999987
Q ss_pred H
Q 040540 652 A 652 (669)
Q Consensus 652 ~ 652 (669)
+
T Consensus 278 ~ 278 (282)
T cd07831 278 R 278 (282)
T ss_pred h
Confidence 5
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=198.40 Aligned_cols=198 Identities=19% Similarity=0.202 Sum_probs=139.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..++.++|+|++++++++......+++|||++ ++|.+++.... ..+++..+..++.++++|++|||. .
T Consensus 44 ~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~----~ 118 (283)
T cd07835 44 TAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHS----H 118 (283)
T ss_pred HHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 45678999999999999999999998899999999995 79999987543 358999999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+++.. ......++..|+|||++.+. .++.++|||||||++|||+||+.
T Consensus 119 ~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~ 198 (283)
T cd07835 119 RVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRP 198 (283)
T ss_pred CeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 79999988431 00122457889999987664 47899999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhC-CCC--c------ccccc--ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESL-PHR--L------SEVVD--TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~-~~~--~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
||..... ...+...++... +.. + .+... +....... ..........+.+++.+|++.+|++||+++|
T Consensus 199 pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ 276 (283)
T cd07835 199 LFPGDSE-IDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDL-SKVVPNLDEDGLDLLSKMLVYDPAKRISAKA 276 (283)
T ss_pred CCCCCCH-HHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccch-hhhcCCCCHHHHHHHHHHhcCChhhCcCHHH
Confidence 9865321 111122111110 000 0 00000 00000000 0001123356789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
|++
T Consensus 277 il~ 279 (283)
T cd07835 277 ALQ 279 (283)
T ss_pred Hhc
Confidence 974
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-22 Score=191.50 Aligned_cols=196 Identities=23% Similarity=0.216 Sum_probs=138.2
Q ss_pred cCchhhhhhccccccccceecccccc-----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN-----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.-.+|+..++.++|+|++.+.+.... -..+|+|+|+|+ .+|++.++. +..+......-++.|+.+|++|+|.
T Consensus 67 RtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elMe-tDL~~iik~-~~~L~d~H~q~f~YQiLrgLKyiHS- 143 (359)
T KOG0660|consen 67 RTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELME-TDLHQIIKS-QQDLTDDHAQYFLYQILRGLKYIHS- 143 (359)
T ss_pred HHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhHHh-hHHHHHHHc-CccccHHHHHHHHHHHHHhcchhhc-
Confidence 34578999999999999999887654 345799999995 799999985 3448888888899999999999994
Q ss_pred CCCCCeeecCCCCcc---------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHH
Q 040540 523 HSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLME 574 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~e 574 (669)
.+|+|||+|++. ..+..+.|..|.|||++.. ..|+.+.||||.|||+.|
T Consensus 144 ---AnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AE 220 (359)
T KOG0660|consen 144 ---ANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAE 220 (359)
T ss_pred ---ccccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHH
Confidence 589999999540 1133468999999998765 569999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCC---CC-c--------ccccc--ccccchhhhhhhhHHHHHHHHHHHhhcccCC
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLP---HR-L--------SEVVD--TNLVREEQAFSAKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~---~~-~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~ 640 (669)
|++|++-|.+. +..+....+-...+ +. + ...+. +....... ........+.++++..+++..|
T Consensus 221 mL~gkplFpG~--d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f-~~~fp~a~p~AidLlekmL~fd 297 (359)
T KOG0660|consen 221 MLTGKPLFPGK--DYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPF-SSIFPNANPLAIDLLEKMLVFD 297 (359)
T ss_pred HHcCCCCCCCC--chHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCH-HHHcCCCCHHHHHHHHHHhccC
Confidence 99999877542 11111111111110 00 0 00000 00000000 0011245567899999999999
Q ss_pred CCCCCCHHHHHH
Q 040540 641 PDKRMHMTDAAA 652 (669)
Q Consensus 641 P~~Rps~~~v~~ 652 (669)
|.+|+|++|+++
T Consensus 298 P~kRita~eAL~ 309 (359)
T KOG0660|consen 298 PKKRITAEEALA 309 (359)
T ss_pred ccccCCHHHHhc
Confidence 999999999976
|
|
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=194.99 Aligned_cols=179 Identities=21% Similarity=0.200 Sum_probs=137.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|...++.++|+|++++++.+..+...++++||+++++|.+++.+. ..+++.....++.++++|+.|+|. .
T Consensus 38 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lH~----~ 112 (262)
T cd05572 38 EHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILRDR-GLFDEYTARFYIACVVLAFEYLHN----R 112 (262)
T ss_pred HHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhh----C
Confidence 34667888999999999999999998888999999999999999999754 457888999999999999999994 5
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+++|+|+++.. ......|+..|+|||......++.++|+||||+++|||++|+.||
T Consensus 113 ~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~ 192 (262)
T cd05572 113 GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPF 192 (262)
T ss_pred CcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCc
Confidence 79999988431 011234788999999988888899999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
.....+. .+......... .. . ..+......+.+++.+||+.+|++||+
T Consensus 193 ~~~~~~~---~~~~~~~~~~~-~~---~---------~~~~~~~~~~~~~i~~~l~~~p~~R~~ 240 (262)
T cd05572 193 GEDDEDP---MEIYNDILKGN-GK---L---------EFPNYIDKAAKDLIKQLLRRNPEERLG 240 (262)
T ss_pred CCCCCCH---HHHHHHHhccC-CC---C---------CCCcccCHHHHHHHHHHccCChhhCcC
Confidence 7643211 11111111000 00 0 011122456889999999999999999
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-21 Score=177.42 Aligned_cols=162 Identities=20% Similarity=0.151 Sum_probs=112.8
Q ss_pred CChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCC---CCc-----ccccccccccccCccccccCCC
Q 040540 487 GSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEG---EDS-----VTQTTTMATIGYMAPEYGSEGI 558 (669)
Q Consensus 487 g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~---~~~-----~~~~~~~gt~~y~aPE~~~~~~ 558 (669)
|+|.+++++.+..+++.++..|+.|+++||+|||..+....|+-.+. +.. .......||+.|||||++.+..
T Consensus 1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~kp~Nil~~~~~~~~~fG~~~~~~~~~~~g~~~y~aPE~~~~~~ 80 (176)
T smart00750 1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQAKSGNILLTWDGLLKLDGSVAFKTPEQSRVDPYFMAPEVIQGQS 80 (176)
T ss_pred CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCcccEeEcCccceeeccceEeeccccCCCcccccChHHhcCCC
Confidence 78999998766779999999999999999999997642223332110 100 0112235899999999999989
Q ss_pred cCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHH--HHHHHHHhhc
Q 040540 559 VSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCL--LSIMDLALDC 636 (669)
Q Consensus 559 ~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~c 636 (669)
++.|+|||||||++|||+||+.||.........+..+.....+..... . ....... ..+.+++.+|
T Consensus 81 ~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~i~~c 148 (176)
T smart00750 81 YTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRD---R---------SNLESVSAARSFADFMRVC 148 (176)
T ss_pred CcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccc---c---------ccHHHHHhhhhHHHHHHHH
Confidence 999999999999999999999998653322222222222211110000 0 0011222 2588999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 637 CMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 637 ~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
|..+|++||++.|+++.+..+...
T Consensus 149 l~~~p~~Rp~~~~ll~~~~~~~~~ 172 (176)
T smart00750 149 ASRLPQRREAANHYLAHCRALFAE 172 (176)
T ss_pred HhcccccccCHHHHHHHHHHHHHH
Confidence 999999999999999988776544
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=195.34 Aligned_cols=188 Identities=22% Similarity=0.397 Sum_probs=139.7
Q ss_pred ccCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcC-----CCccCHHHHHHHHHhHHhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSH-----NYFLDILERLNIMIDVGSA 515 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~-----~~~l~~~~~~~i~~~i~~~ 515 (669)
+.+..|+..++.++|||++++++.+.... ..++++||+++|+|.+++... ...+++.....++.++++|
T Consensus 46 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ 125 (273)
T cd05074 46 EEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASG 125 (273)
T ss_pred HHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 34667899999999999999999775432 236788999999999887531 2347888899999999999
Q ss_pred hhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhh
Q 040540 516 LEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 516 l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
++|||. .+++|+|+++... .....+++.|++||......++.++|||||
T Consensus 126 l~~lH~----~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~sl 201 (273)
T cd05074 126 MEYLSS----KNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAF 201 (273)
T ss_pred HHHHHh----CCEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHH
Confidence 999994 4799999995310 001123467999999888888999999999
Q ss_pred HHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 569 GVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 569 Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||++|||++ |+.|+..... .....+........ .+.+....+.+++.+||+.+|++||++
T Consensus 202 G~il~el~~~g~~p~~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~l~~~p~~Rps~ 262 (273)
T cd05074 202 GVTMWEIMTRGQTPYAGVEN--SEIYNYLIKGNRLK-----------------QPPDCLEDVYELMCQCWSPEPKCRPSF 262 (273)
T ss_pred HHHHHHHhhCCCCCCCCCCH--HHHHHHHHcCCcCC-----------------CCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence 999999999 8888765321 12222222111000 011234567899999999999999999
Q ss_pred HHHHHHHHHh
Q 040540 648 TDAAAKLKKI 657 (669)
Q Consensus 648 ~~v~~~l~~~ 657 (669)
.++++.|+++
T Consensus 263 ~~~~~~l~~~ 272 (273)
T cd05074 263 QHLRDQLELI 272 (273)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-21 Score=195.06 Aligned_cols=182 Identities=20% Similarity=0.260 Sum_probs=141.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|+|++++++.+......++||||+++++|.+++.. ..+++.....++.+++.|+.|||+ .
T Consensus 47 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~--~~~~~~~~~~~~~~l~~~l~~lh~----~ 120 (277)
T cd06641 47 EDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEP--GPLDETQIATILREILKGLDYLHS----E 120 (277)
T ss_pred HHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHcc----C
Confidence 3566788899999999999999999988899999999999999999864 357899999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......|+..|+|||......++.++|||||||++|||++|+.|
T Consensus 121 ~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p 200 (277)
T cd06641 121 KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPP 200 (277)
T ss_pred CeecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCC
Confidence 89999988431 01112478889999999888889999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
+..... ......+....+ +.+ .......+.+++.+||+.+|++||+|.++++.
T Consensus 201 ~~~~~~--~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~ 253 (277)
T cd06641 201 HSELHP--MKVLFLIPKNNP--------PTL---------EGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 253 (277)
T ss_pred CCccch--HHHHHHHhcCCC--------CCC---------CcccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 865321 111111111100 001 11233457899999999999999999999983
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-22 Score=207.06 Aligned_cols=183 Identities=17% Similarity=0.202 Sum_probs=134.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|||++++++.+......++||||+++|+|.+++... .++......++.+++.|++|||. .+
T Consensus 89 ~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~----~~ 162 (371)
T cd05622 89 FFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIHS----MG 162 (371)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 3556888899999999999999999888999999999999999999753 46777888899999999999994 48
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCC----CcCccccchhhHHHHHHHHh
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEG----IVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~s~Gvil~el~t 577 (669)
|+|||+|+.. ......||+.|||||++... .++.++|||||||++|||++
T Consensus 163 ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~ 242 (371)
T cd05622 163 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV 242 (371)
T ss_pred EEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHh
Confidence 9999999530 01133589999999998653 37899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC--CCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK--RMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~--Rps~~~v~~ 652 (669)
|+.||..... ........... .. ..++.....+..+.+++.+|+..+|.+ ||++.|+++
T Consensus 243 G~~Pf~~~~~-----~~~~~~i~~~~-~~----------~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~ 303 (371)
T cd05622 243 GDTPFYADSL-----VGTYSKIMNHK-NS----------LTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 303 (371)
T ss_pred CCCCCCCCCH-----HHHHHHHHcCC-Cc----------ccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhc
Confidence 9999975221 11111110000 00 001112233456788999999844433 778888876
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=196.35 Aligned_cols=183 Identities=19% Similarity=0.203 Sum_probs=133.8
Q ss_pred cCchhhhhhccc-cccccceecccccc------ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhh
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
.+..|...+.++ +|+|++++++++.. ....+++|||+++|+|.+++... ...+++.....++.|+++|+.||
T Consensus 58 ~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~L 137 (282)
T cd06636 58 EIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHL 137 (282)
T ss_pred HHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345677777777 69999999998753 45678999999999999999753 34578888889999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-------------------------cccccccccccCcccccc-----CCCcCccccchhhH
Q 040540 520 RHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYG 569 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~G 569 (669)
|. .+++|+|+++.. ......|+..|+|||.+. ...++.++||||||
T Consensus 138 H~----~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG 213 (282)
T cd06636 138 HA----HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLG 213 (282)
T ss_pred HH----CCcccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHH
Confidence 95 479999988320 011234788999999875 34578899999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|++|||+||+.||........ ... +... ..+.+. ....+..+.+++.+||+.||.+||++.|
T Consensus 214 ~~l~el~~g~~p~~~~~~~~~-~~~-~~~~--------~~~~~~--------~~~~~~~~~~li~~cl~~~p~~Rp~~~e 275 (282)
T cd06636 214 ITAIEMAEGAPPLCDMHPMRA-LFL-IPRN--------PPPKLK--------SKKWSKKFIDFIEGCLVKNYLSRPSTEQ 275 (282)
T ss_pred HHHHHHHhCCCCccccCHHhh-hhh-HhhC--------CCCCCc--------ccccCHHHHHHHHHHhCCChhhCcCHHH
Confidence 999999999999865321110 000 0000 001110 1123456889999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 276 ll~ 278 (282)
T cd06636 276 LLK 278 (282)
T ss_pred Hhc
Confidence 864
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=189.30 Aligned_cols=205 Identities=21% Similarity=0.329 Sum_probs=147.1
Q ss_pred ccccCchhhhhhc--cccccccceeccccccc----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhh
Q 040540 445 AFRSFDSECEVLR--NVRHRNLIKIISSCSNP----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 445 ~~~~~~~e~~~l~--~l~h~niv~l~~~~~~~----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
..+++.+|.++.. .++|+||+.++++=..+ ...+||.+|-+.|||+|+|.+ ..++....+++++.+|.||++
T Consensus 246 dE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r--~tv~~~~ml~LalS~AsGLaH 323 (513)
T KOG2052|consen 246 DERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNR--NTVTTEGMLKLALSIASGLAH 323 (513)
T ss_pred chhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHhh--ccCCHHHHHHHHHHHhhhHHH
Confidence 3456666666544 56999999999875443 246899999999999999975 678999999999999999999
Q ss_pred hhcC----CCCCCeeecCCCCc-----------------------------ccccccccccccCccccccCCC----cC-
Q 040540 519 LRHG----HSSAPIIHCEGEDS-----------------------------VTQTTTMATIGYMAPEYGSEGI----VS- 560 (669)
Q Consensus 519 lh~~----~~~~~i~h~d~~~~-----------------------------~~~~~~~gt~~y~aPE~~~~~~----~~- 560 (669)
||-. ...|.|.|||+|.. ...+..+||-+|||||+++... +.
T Consensus 324 LH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fes 403 (513)
T KOG2052|consen 324 LHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFES 403 (513)
T ss_pred HHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhh
Confidence 9931 23688999999843 1234457999999999987632 22
Q ss_pred -ccccchhhHHHHHHHHhC----------CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHH
Q 040540 561 -AKCDVYSYGVLLMETFTR----------KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSI 629 (669)
Q Consensus 561 -~~~Dv~s~Gvil~el~tg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (669)
..+||||||.|+||++-+ +.||.+.-..+-..-+. +..+- .+-+.|.+.. ....++++..+
T Consensus 404 yk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeM-rkVVC---v~~~RP~ipn----rW~s~~~l~~m 475 (513)
T KOG2052|consen 404 YKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEM-RKVVC---VQKLRPNIPN----RWKSDPALRVM 475 (513)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHH-hccee---ecccCCCCCc----ccccCHHHHHH
Confidence 369999999999999653 35776543333222111 11110 0011121111 12245778889
Q ss_pred HHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 630 MDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 630 ~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.++|..||..+|+.|-|+--|.+.|.++.+
T Consensus 476 ~klMkeCW~~Np~aRltALriKKtl~~l~~ 505 (513)
T KOG2052|consen 476 AKLMKECWYANPAARLTALRIKKTLAKLSN 505 (513)
T ss_pred HHHHHHhhcCCchhhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999998875
|
|
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=200.61 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=105.9
Q ss_pred Cchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcC--------CCccCHHHHHHHHHhHHhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSH--------NYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~--------~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
...|+.+++.++|||++++++.+.. ....+++|||+. +++.+++... ...+++.....++.|++.|++|
T Consensus 45 ~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~ 123 (317)
T cd07868 45 ACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHY 123 (317)
T ss_pred HHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988744 455789999997 5888887531 2247888889999999999999
Q ss_pred hhcCCCCCCeeecCCCCccc--------------------------------ccccccccccCccccccC-CCcCccccc
Q 040540 519 LRHGHSSAPIIHCEGEDSVT--------------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDV 565 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~~--------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv 565 (669)
||. .+|+|||+|+... .....||+.|+|||++.+ ..++.++||
T Consensus 124 LH~----~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di 199 (317)
T cd07868 124 LHA----NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDI 199 (317)
T ss_pred HHh----CCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhH
Confidence 994 4799999984310 012357889999999876 458999999
Q ss_pred hhhHHHHHHHHhCCCCCCc
Q 040540 566 YSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 566 ~s~Gvil~el~tg~~p~~~ 584 (669)
||+||++|||+||+.||..
T Consensus 200 wslG~il~el~~g~~~f~~ 218 (317)
T cd07868 200 WAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred HHHHHHHHHHHhCCCCccC
Confidence 9999999999999999964
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=200.80 Aligned_cols=174 Identities=20% Similarity=0.159 Sum_probs=131.3
Q ss_pred Cchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|..++.... |++++.+.+++...+..++||||+++|+|.+++... ..+++.+...|+.+++.|++|||. .+
T Consensus 47 ~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~-~~l~~~~~~~i~~qi~~al~~lH~----~~ 121 (323)
T cd05615 47 TMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQV-GKFKEPQAVFYAAEISVGLFFLHR----RG 121 (323)
T ss_pred HHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 445666666665 567778888888888899999999999999999753 458899999999999999999994 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 122 ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf 201 (323)
T cd05615 122 IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPF 201 (323)
T ss_pred eeccCCCHHHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCC
Confidence 9999998430 011224899999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
..... ..+.+.+.... . . .+......+.+++.+|++.+|.+|++.
T Consensus 202 ~~~~~--~~~~~~i~~~~---~------~---------~p~~~~~~~~~li~~~l~~~p~~R~~~ 246 (323)
T cd05615 202 DGEDE--DELFQSIMEHN---V------S---------YPKSLSKEAVSICKGLMTKHPSKRLGC 246 (323)
T ss_pred CCCCH--HHHHHHHHhCC---C------C---------CCccCCHHHHHHHHHHcccCHhhCCCC
Confidence 75321 11111111110 0 0 011223456899999999999999975
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=196.38 Aligned_cols=181 Identities=20% Similarity=0.263 Sum_probs=136.9
Q ss_pred cCchhhhhhcccc---ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVR---HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|+..++.++ |+|++++++++......++||||+++++|.++++. ..+++.....++.++++|+.|||+
T Consensus 45 ~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~i~~~l~~lh~--- 119 (277)
T cd06917 45 DIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKA--GPIAEKYISVIIREVLVALKYIHK--- 119 (277)
T ss_pred HHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 4556777777776 99999999999888888999999999999999865 368899999999999999999995
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhC
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......|+..|+|||+..++ .++.++|||||||++|||++|
T Consensus 120 -~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g 198 (277)
T cd06917 120 -VGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATG 198 (277)
T ss_pred -CCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhC
Confidence 479999988430 01122478889999988654 478999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ..+... . .....+.+.. ...+..+.+++.+||+.||++||++.|+++
T Consensus 199 ~~p~~~~~~-----~~~~~~-~----~~~~~~~~~~--------~~~~~~~~~~i~~~l~~~p~~R~~~~~il~ 254 (277)
T cd06917 199 NPPYSDVDA-----FRAMML-I----PKSKPPRLED--------NGYSKLLREFVAACLDEEPKERLSAEELLK 254 (277)
T ss_pred CCCCCCCCh-----hhhhhc-c----ccCCCCCCCc--------ccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence 999865321 111100 0 0000011110 113456789999999999999999999976
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=194.29 Aligned_cols=173 Identities=17% Similarity=0.191 Sum_probs=130.4
Q ss_pred cccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc
Q 040540 458 NVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV 537 (669)
Q Consensus 458 ~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~ 537 (669)
..+|++++.+++.+...+..++||||+++|+|.+++... ..+++.....|+.|+++|++|||. .+++|+|+|+..
T Consensus 53 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~-~~l~~~~~~~i~~qi~~al~~lH~----~~ivH~dikp~N 127 (279)
T cd05633 53 TGDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQH-GVFSEKEMRFYATEIILGLEHMHN----RFVVYRDLKPAN 127 (279)
T ss_pred hCCCCcEeEEEEEEecCCeEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CCcCCCCCCHHH
Confidence 347899999999988888899999999999999999754 458999999999999999999995 479999998431
Q ss_pred -----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHH
Q 040540 538 -----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR 593 (669)
Q Consensus 538 -----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~ 593 (669)
......||..|+|||.... ..++.++|||||||++|||++|+.||........
T Consensus 128 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~--- 204 (279)
T cd05633 128 ILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK--- 204 (279)
T ss_pred EEECCCCCEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCH---
Confidence 0112248999999998864 5588999999999999999999999965322111
Q ss_pred HHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
..+...... ....+ +......+.+++.+|+..||++|| +++|+++
T Consensus 205 ~~~~~~~~~-----~~~~~---------~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~ 254 (279)
T cd05633 205 HEIDRMTLT-----VNVEL---------PDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKE 254 (279)
T ss_pred HHHHHHhhc-----CCcCC---------ccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHh
Confidence 111111000 00011 123345678999999999999999 5888766
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-21 Score=203.19 Aligned_cols=129 Identities=22% Similarity=0.192 Sum_probs=105.9
Q ss_pred cCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+..+..++|+|++++++++.... ..++||||+++ ++.+.+.. .+++.....++.|+++||+|||.
T Consensus 66 ~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~ 141 (359)
T cd07876 66 RAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIHM---ELDHERMSYLLYQMLCGIKHLHS 141 (359)
T ss_pred HHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCCc-CHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999875432 35899999974 67766643 36788888899999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+|+|||+|+.. ......||..|+|||++.+..++.++||||+||++|||+|
T Consensus 142 ----~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~t 217 (359)
T cd07876 142 ----AGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVK 217 (359)
T ss_pred ----CCcccCCCCHHHEEECCCCCEEEecCCCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHh
Confidence 479999998431 0112357899999999998889999999999999999999
Q ss_pred CCCCCCc
Q 040540 578 RKRPTDE 584 (669)
Q Consensus 578 g~~p~~~ 584 (669)
|+.||..
T Consensus 218 g~~pf~~ 224 (359)
T cd07876 218 GSVIFQG 224 (359)
T ss_pred CCCCCCC
Confidence 9999975
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-21 Score=195.91 Aligned_cols=199 Identities=17% Similarity=0.195 Sum_probs=136.6
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+..|+..++.++|+|++++.+++..+...++||||++ +++.+++......+.+.....++.++++||.|||. .++
T Consensus 50 ~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~----~~i 124 (291)
T cd07870 50 AIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHG----QHI 124 (291)
T ss_pred HHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEeccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh----CCc
Confidence 4568889999999999999999988888899999996 78888876554567888888899999999999995 479
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|+++.. ......++..|+|||+..+. .++.++|||||||++|||+||+.||
T Consensus 125 ~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f 204 (291)
T cd07870 125 LHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAF 204 (291)
T ss_pred ccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 999998431 01112368899999988653 4788999999999999999999999
Q ss_pred CcCCCCCccHHHHHH-HhCC------------CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 583 DEMFTGEMSLRRWVK-ESLP------------HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
.........+..... ...+ ...........................+.+++.+|++.||.+|||+.|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~ 284 (291)
T cd07870 205 PGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQD 284 (291)
T ss_pred CCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHH
Confidence 753321111111100 0000 000000000000000000000112356789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
++.
T Consensus 285 ~l~ 287 (291)
T cd07870 285 ALL 287 (291)
T ss_pred Hhc
Confidence 864
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-21 Score=195.07 Aligned_cols=199 Identities=20% Similarity=0.177 Sum_probs=140.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..++.++|+|++++++.+...+..+++|||++++.+..+... ...+++.....++.++++|+.|||. .
T Consensus 45 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH~----~ 119 (288)
T cd07833 45 KTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLEAS-PGGLPPDAVRSYIWQLLQAIAYCHS----H 119 (288)
T ss_pred hHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3566789999999999999999999888889999999998777665543 4558899999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++.. ......|+..|+|||++.+. .++.++||||||+++|||++|+
T Consensus 120 ~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~ 199 (288)
T cd07833 120 NIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGE 199 (288)
T ss_pred CeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCC
Confidence 79999988420 11123467889999999887 7899999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHH---hCCCCccccc--cc--------cc-cchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 580 RPTDEMFTGEMSLRRWVKE---SLPHRLSEVV--DT--------NL-VREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~---~~~~~~~~~~--~~--------~~-~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
.||...... ..+ ..... ..+....... ++ .. .........+......+.+++.+||..+|++||
T Consensus 200 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp 277 (288)
T cd07833 200 PLFPGDSDI-DQL-YLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERL 277 (288)
T ss_pred CCCCCCCHH-HHH-HHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcc
Confidence 998653211 101 00000 0000000000 00 00 000000011222367789999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
+++++++
T Consensus 278 s~~~il~ 284 (288)
T cd07833 278 TCDELLQ 284 (288)
T ss_pred cHHHHhc
Confidence 9999875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-22 Score=204.00 Aligned_cols=173 Identities=18% Similarity=0.112 Sum_probs=127.8
Q ss_pred hhhhhccc---cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 452 ECEVLRNV---RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 452 e~~~l~~l---~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
|..++... .||+++++++.+......++||||+++|+|.+++... ..+++.....++.|+++|++|||. .+|
T Consensus 43 e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qil~al~~LH~----~~i 117 (330)
T cd05586 43 ERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKE-GRFSEDRAKFYIAELVLALEHLHK----YDI 117 (330)
T ss_pred HHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCCChHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CCe
Confidence 44444443 6999999999998889999999999999999998753 458888999999999999999994 479
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|||+|+.. ......||..|+|||++.+. .++.++||||+||++|||+||+.||
T Consensus 118 vHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf 197 (330)
T cd05586 118 VYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPF 197 (330)
T ss_pred EeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCC
Confidence 999998420 01123589999999988764 4889999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
..... .+..+....... .+. .......+.+++.+|++.||.+||++.
T Consensus 198 ~~~~~-----~~~~~~i~~~~~------~~~--------~~~~~~~~~~li~~~L~~~P~~R~~~~ 244 (330)
T cd05586 198 YAEDT-----QQMYRNIAFGKV------RFP--------KNVLSDEGRQFVKGLLNRNPQHRLGAH 244 (330)
T ss_pred CCCCH-----HHHHHHHHcCCC------CCC--------CccCCHHHHHHHHHHcCCCHHHCCCCC
Confidence 65221 111111100000 000 011234567899999999999999543
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-21 Score=195.76 Aligned_cols=182 Identities=19% Similarity=0.267 Sum_probs=140.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++.+...+..+++|||+++++|.+++.. ..+++.....++.+++.|++|+|. .+
T Consensus 63 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~----~g 136 (292)
T cd06657 63 LLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLKALSVLHA----QG 136 (292)
T ss_pred HHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 466788899999999999999999988999999999999999998864 347888899999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......|+..|+|||...+..++.++|||||||++|||++|+.||
T Consensus 137 ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~ 216 (292)
T cd06657 137 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPY 216 (292)
T ss_pred eecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 9999988430 011124788899999988878899999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
... ........+....+..... .......+.+++.+||..+|.+||++.++++
T Consensus 217 ~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~ 269 (292)
T cd06657 217 FNE--PPLKAMKMIRDNLPPKLKN---------------LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 269 (292)
T ss_pred CCC--CHHHHHHHHHhhCCcccCC---------------cccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence 642 1122222222222221111 1112335678999999999999999999987
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-21 Score=194.76 Aligned_cols=199 Identities=16% Similarity=0.204 Sum_probs=137.6
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+..|+.+++.++|+|++++++++......++||||++ ++|.+++......+++.....++.++++|+.|||. .++
T Consensus 50 ~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~----~~i 124 (291)
T cd07844 50 AIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLD-TDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQ----RRV 124 (291)
T ss_pred HHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCC-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh----CCe
Confidence 4568999999999999999999998889999999998 59999997655678889999999999999999995 479
Q ss_pred eecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCC
Q 040540 529 IHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 529 ~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|+++.. ......++..|+|||+..+ ..++.++||||+||++|||++|+.||
T Consensus 125 ~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~ 204 (291)
T cd07844 125 LHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLF 204 (291)
T ss_pred ecccCCHHHEEEcCCCCEEECccccccccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCC
Confidence 999998420 0011236788999998865 45889999999999999999999998
Q ss_pred CcCCCCCccHHHHHHH--hC-CCCccccc------cc--cccchhhhhhh--hHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 583 DEMFTGEMSLRRWVKE--SL-PHRLSEVV------DT--NLVREEQAFSA--KMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~--~~-~~~~~~~~------~~--~~~~~~~~~~~--~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
.........+....+. .. +....... .. ........... .......+.+++.+|++.+|++|||+.|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e 284 (291)
T cd07844 205 PGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAE 284 (291)
T ss_pred CCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHH
Confidence 6532111111100000 00 00000000 00 00000000000 0011256789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 285 ~l~ 287 (291)
T cd07844 285 AMK 287 (291)
T ss_pred Hhc
Confidence 864
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-21 Score=191.94 Aligned_cols=181 Identities=17% Similarity=0.174 Sum_probs=139.5
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+..|..+++.++|||++++++++......++||||+++++|.+++.+ ....+++.....++.++++|+.|||.
T Consensus 49 ~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---- 124 (260)
T cd08222 49 ANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQ---- 124 (260)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHH----
Confidence 34577888999999999999999888888999999999999998864 34568999999999999999999994
Q ss_pred CCeeecCCCCccc------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 526 APIIHCEGEDSVT------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 526 ~~i~h~d~~~~~~------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
.+++|+|+++... .....|++.|+|||...+..++.++||||||+++|||++|+.|
T Consensus 125 ~~i~h~~l~~~nili~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~ 204 (260)
T cd08222 125 RRILHRDLKAKNIFLKNNLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHA 204 (260)
T ss_pred cCccccCCChhheEeecCCEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 4799999874310 0122378889999998877789999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.... ............ .+.. +......+.+++.+||..+|++||++.|+++
T Consensus 205 ~~~~~-----~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 256 (260)
T cd08222 205 FEGQN-----FLSVVLRIVEGP-----TPSL---------PETYSRQLNSIMQSMLNKDPSLRPSAAEILR 256 (260)
T ss_pred CCCcc-----HHHHHHHHHcCC-----CCCC---------cchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence 85421 111111111100 0111 2234456789999999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-21 Score=197.37 Aligned_cols=183 Identities=24% Similarity=0.257 Sum_probs=139.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++++......++||||++ |++.+++......+++.++..++.+++.|+.|||. .
T Consensus 66 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~----~ 140 (313)
T cd06633 66 QDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHS----H 140 (313)
T ss_pred HHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 345678889999999999999999998888999999996 68888887666678999999999999999999994 4
Q ss_pred CeeecCCCCcc---------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV---------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+++|+|+++.. ......|+..|+|||++. ...++.++|||||||++|||++|+.|+
T Consensus 141 gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~ 220 (313)
T cd06633 141 NMIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 220 (313)
T ss_pred CeecCCCChhhEEECCCCCEEEeecCCCcccCCCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 79999988531 011234788999999874 355888999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
..... .......... .. +... .......+.+++.+||+.+|.+||++.++++
T Consensus 221 ~~~~~--~~~~~~~~~~---~~-----~~~~--------~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~ 272 (313)
T cd06633 221 FNMNA--MSALYHIAQN---DS-----PTLQ--------SNEWTDSFRGFVDYCLQKIPQERPASAELLR 272 (313)
T ss_pred CCCCh--HHHHHHHHhc---CC-----CCCC--------ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 65321 1111111110 00 0000 1112234788999999999999999999986
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-21 Score=199.78 Aligned_cols=187 Identities=17% Similarity=0.193 Sum_probs=136.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|...+...+|++++++++.+......++||||+++|+|.+++++....+++.....++.+++.|++|||. .+
T Consensus 47 ~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~----~~ 122 (332)
T cd05623 47 CFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQ----LH 122 (332)
T ss_pred HHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 35567888888999999999999998889999999999999999998655668888888999999999999995 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCcccccc-----CCCcCccccchhhHHHHHHHH
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~el~ 576 (669)
++|||+|+.. ......||+.|+|||++. ...++.++|||||||++|||+
T Consensus 123 iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell 202 (332)
T cd05623 123 YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEML 202 (332)
T ss_pred eEecCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHh
Confidence 9999999430 001135899999999875 345889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC--CCCHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK--RMHMTDAAAK 653 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~--Rps~~~v~~~ 653 (669)
+|+.||.... ..+......... .+. ... .........+.+++.+|+..+|.+ |+++.|+++-
T Consensus 203 ~g~~Pf~~~~-----~~~~~~~i~~~~-~~~---~~p------~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h 266 (332)
T cd05623 203 YGETPFYAES-----LVETYGKIMNHK-ERF---QFP------AQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH 266 (332)
T ss_pred cCCCCCCCCC-----HHHHHHHHhCCC-ccc---cCC------CccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence 9999996521 111111111000 000 000 001223456778888887655443 6888888654
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.6e-22 Score=189.91 Aligned_cols=198 Identities=21% Similarity=0.222 Sum_probs=140.2
Q ss_pred Cchhhhhhccccccccceeccccccc--c---ccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNP--D---FKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~--~---~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
-..|..+|+.++|||||+++.++... . ...+||||||. +|++.++. .+..++.....-++.|+.+|+.|||
T Consensus 64 knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh 142 (364)
T KOG0658|consen 64 KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH 142 (364)
T ss_pred CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH
Confidence 34689999999999999998877542 2 34689999994 99999984 2456788888889999999999999
Q ss_pred cCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLME 574 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~e 574 (669)
. .+|+|||+|+.. ...+..-|..|.|||.+.+. .|+.+.||||.|||+.|
T Consensus 143 ~----~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aE 218 (364)
T KOG0658|consen 143 S----HGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAE 218 (364)
T ss_pred h----cCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHH
Confidence 4 589999999641 11233467899999998875 49999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhC-CCC---------ccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESL-PHR---------LSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|+-|++-|.+. .+..++...++..- |.+ ..+.-.+.+....-..-......++..+++.++++.+|.+|
T Consensus 219 Ll~g~plFpG~-s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R 297 (364)
T KOG0658|consen 219 LLKGQPLFPGD-SSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKR 297 (364)
T ss_pred HhcCCcccCCC-CHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhc
Confidence 99999887652 22233333322111 110 00111122222110000123455678899999999999999
Q ss_pred CCHHHHHH
Q 040540 645 MHMTDAAA 652 (669)
Q Consensus 645 ps~~~v~~ 652 (669)
.++.|++.
T Consensus 298 ~~~~~~l~ 305 (364)
T KOG0658|consen 298 LSALEALA 305 (364)
T ss_pred CCHHHHhc
Confidence 99998875
|
|
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-21 Score=199.03 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=112.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++...+|++++.+++++......++||||+++|+|.+++.+....+++.....++.|++.|++|||. .+
T Consensus 47 ~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~----~~ 122 (331)
T cd05597 47 CFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQ----LG 122 (331)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 35668888888999999999999999999999999999999999997655568888899999999999999994 47
Q ss_pred eeecCCCCcc-----------------------c---ccccccccccCccccccC-----CCcCccccchhhHHHHHHHH
Q 040540 528 IIHCEGEDSV-----------------------T---QTTTMATIGYMAPEYGSE-----GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~---~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gvil~el~ 576 (669)
|+|||+|+.. . .....||+.|||||++.. ..++.++|||||||++|||+
T Consensus 123 ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~ 202 (331)
T cd05597 123 YVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEML 202 (331)
T ss_pred eEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHh
Confidence 9999998420 0 011248999999998863 45788999999999999999
Q ss_pred hCCCCCCc
Q 040540 577 TRKRPTDE 584 (669)
Q Consensus 577 tg~~p~~~ 584 (669)
+|+.||..
T Consensus 203 ~g~~Pf~~ 210 (331)
T cd05597 203 YGETPFYA 210 (331)
T ss_pred hCCCCCCC
Confidence 99999865
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-21 Score=192.80 Aligned_cols=198 Identities=19% Similarity=0.153 Sum_probs=142.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|++++++++.+......++++||++ +++.+++......+++..+..++.++++|+.|||. .+
T Consensus 44 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~----~~ 118 (283)
T cd05118 44 TALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMD-TDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHS----HG 118 (283)
T ss_pred HHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccC-CCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45568889999999999999999998899999999998 48998887655678999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......++..|+|||...+. .++.++||||+|+++|||+||+.|
T Consensus 119 i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~ 198 (283)
T cd05118 119 ILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPL 198 (283)
T ss_pred eeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCC
Confidence 9999988431 01123477789999998776 688999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCC----Ccccccc------ccccc--hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPH----RLSEVVD------TNLVR--EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~----~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|..... ............. .+....+ ..... ..............+.+++.+||+.||.+||++++
T Consensus 199 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ 276 (283)
T cd05118 199 FPGKSE--IDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQ 276 (283)
T ss_pred CCCCCH--HHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHH
Confidence 865321 1111111111100 0000000 00000 00000112345678899999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
++.
T Consensus 277 ll~ 279 (283)
T cd05118 277 ALA 279 (283)
T ss_pred Hhh
Confidence 975
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-21 Score=202.30 Aligned_cols=196 Identities=19% Similarity=0.155 Sum_probs=134.2
Q ss_pred cCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+..++.++|+|++++++.+... ...++||||++ +++.+.+.. .+++.....++.|+++||+|||.
T Consensus 62 ~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~ 137 (355)
T cd07874 62 RAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLHS 137 (355)
T ss_pred HHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEhhhhc-ccHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHh
Confidence 455688889999999999999887543 24589999997 467777753 37888888999999999999994
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|||+|+.. ......||..|+|||++.+..++.++|||||||++|||++
T Consensus 138 ----~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~ 213 (355)
T cd07874 138 ----AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVR 213 (355)
T ss_pred ----CCcccCCCChHHEEECCCCCEEEeeCcccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHh
Confidence 489999998531 0112358899999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHh----------CCCCccccc----------cccccchh---hhhhhhHHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKES----------LPHRLSEVV----------DTNLVREE---QAFSAKMDCLLSIMDLAL 634 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~----------~~~~~~~~~----------~~~~~~~~---~~~~~~~~~~~~~~~l~~ 634 (669)
|+.||....... .+...+... ........+ .+...... ............+.+++.
T Consensus 214 g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 292 (355)
T cd07874 214 HKILFPGRDYID-QWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLS 292 (355)
T ss_pred CCCCCCCCCHHH-HHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHH
Confidence 999986522100 000000000 000000000 00000000 000011123456789999
Q ss_pred hcccCCCCCCCCHHHHHH
Q 040540 635 DCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 635 ~c~~~~P~~Rps~~~v~~ 652 (669)
+|++.||++|||+.|+++
T Consensus 293 ~mL~~dP~~Rps~~ell~ 310 (355)
T cd07874 293 KMLVIDPAKRISVDEALQ 310 (355)
T ss_pred HHhcCCchhcCCHHHHhc
Confidence 999999999999999987
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-21 Score=195.88 Aligned_cols=194 Identities=21% Similarity=0.226 Sum_probs=132.3
Q ss_pred hhhhhhcc---ccccccceecccccc-----ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhc
Q 040540 451 SECEVLRN---VRHRNLIKIISSCSN-----PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 451 ~e~~~l~~---l~h~niv~l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.|+..+.. ++|+|++++++++.. ....+++|||++ +++.+++.... ..+++.....++.|++.|+.|+|.
T Consensus 48 ~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~ 126 (288)
T cd07863 48 REVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHA 126 (288)
T ss_pred HHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45555544 479999999988754 234689999998 58988887532 347899999999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+|+.. ......||..|+|||++.+..++.++||||+||++|||++
T Consensus 127 ----~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~ 202 (288)
T cd07863 127 ----NCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFR 202 (288)
T ss_pred ----CCeecCCCCHHHEEECCCCCEEECccCccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHh
Confidence 479999998531 0112347889999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHh-CCC--Cccc-------cccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKES-LPH--RLSE-------VVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~-~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|+.||..... ...+....... .+. .+.. ...+...... .....+....+.+++.+|++.||++|||+
T Consensus 203 g~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~R~t~ 279 (288)
T cd07863 203 RKPLFCGNSE-ADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPV--QSVVPEIEESGAQLLLEMLTFNPHKRISA 279 (288)
T ss_pred CCcCcCCCCH-HHHHHHHHHHhCCCChhhCcccccccccccCCCCCCch--HHhCcCcCHHHHHHHHHHhccCcccCCCH
Confidence 9999864321 11111111110 000 0000 0000000000 00012334567899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|++.
T Consensus 280 ~~~l~ 284 (288)
T cd07863 280 FRALQ 284 (288)
T ss_pred HHHhc
Confidence 99874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-22 Score=208.25 Aligned_cols=132 Identities=20% Similarity=0.268 Sum_probs=114.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|++++++++.+......++||||+++|+|.+++.+. ..+++.....++.+++.|++|||. .+
T Consensus 47 ~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~~L~~lH~----~g 121 (360)
T cd05627 47 HIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK-DTLSEEATQFYIAETVLAIDAIHQ----LG 121 (360)
T ss_pred HHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4556888899999999999999999889999999999999999999753 458888899999999999999994 58
Q ss_pred eeecCCCCcc--------------c----------------------------------------------ccccccccc
Q 040540 528 IIHCEGEDSV--------------T----------------------------------------------QTTTMATIG 547 (669)
Q Consensus 528 i~h~d~~~~~--------------~----------------------------------------------~~~~~gt~~ 547 (669)
|+|||+|+.. . ..+.+||+.
T Consensus 122 ivHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 201 (360)
T cd05627 122 FIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPD 201 (360)
T ss_pred eEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCcc
Confidence 9999998430 0 012358999
Q ss_pred cCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 548 YMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 548 y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
|+|||++.+..++.++|||||||++|||+||+.||..
T Consensus 202 Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~ 238 (360)
T cd05627 202 YIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCS 238 (360)
T ss_pred ccCHHHHcCCCCCCcceeccccceeeecccCCCCCCC
Confidence 9999999988899999999999999999999999975
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-21 Score=201.94 Aligned_cols=194 Identities=18% Similarity=0.122 Sum_probs=134.6
Q ss_pred cCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+..++.++|+|++++++.+... ...++||||++ +++.+++.. .+++.....++.|+++||+|||.
T Consensus 69 ~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~ 144 (364)
T cd07875 69 RAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLHS 144 (364)
T ss_pred HHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEEeCCC-CCHHHHHHh---cCCHHHHHHHHHHHHHHHHHHhh
Confidence 455688899999999999999876543 24689999997 578777753 37888888999999999999994
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+|+|||+|+.. ......||..|+|||++.+..++.++|||||||++|||++
T Consensus 145 ----~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~ 220 (364)
T cd07875 145 ----AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIK 220 (364)
T ss_pred ----CCeecCCCCHHHEEECCCCcEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHh
Confidence 489999999530 0122358999999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCC-----------ccccc--------------cccccchhhhhhhhHHHHHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHR-----------LSEVV--------------DTNLVREEQAFSAKMDCLLSIMDL 632 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l 632 (669)
|+.||...... ..+...+ ...... +...+ .+..... ............+.++
T Consensus 221 g~~pf~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dl 297 (364)
T cd07875 221 GGVLFPGTDHI-DQWNKVI-EQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFP-ADSEHNKLKASQARDL 297 (364)
T ss_pred CCCCCCCCCHH-HHHHHHH-HhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCcccccc-ccccccccccHHHHHH
Confidence 99999653210 0011110 000000 00000 0000000 0000011223467899
Q ss_pred HhhcccCCCCCCCCHHHHHH
Q 040540 633 ALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 633 ~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.+|++.||.+|||+.|+++
T Consensus 298 l~~mL~~dP~~R~t~~e~L~ 317 (364)
T cd07875 298 LSKMLVIDASKRISVDEALQ 317 (364)
T ss_pred HHHhcCcCcccCCCHHHHhc
Confidence 99999999999999999986
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-21 Score=192.38 Aligned_cols=185 Identities=24% Similarity=0.267 Sum_probs=142.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..++.++|++++++++.+......++++||+++++|.+++......+++.....++.++++|+.|||. .
T Consensus 42 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~----~ 117 (253)
T cd05122 42 EKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHS----N 117 (253)
T ss_pred HHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc----C
Confidence 456678999999999999999999988888999999999999999998654578999999999999999999995 5
Q ss_pred CeeecCCCCcc---------------------c---ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV---------------------T---QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+++|+|+++.. . .....|+..|+|||......++.++||||||++++||++|+.|+
T Consensus 118 ~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~ 197 (253)
T cd05122 118 GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPY 197 (253)
T ss_pred CEecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCC
Confidence 79999988431 0 12234788999999998888899999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
..... ........... ..... ........+.+++.+||+.||++|||+.|+++
T Consensus 198 ~~~~~--~~~~~~~~~~~---~~~~~------------~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~ 250 (253)
T cd05122 198 SELPP--MKALFKIATNG---PPGLR------------NPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLK 250 (253)
T ss_pred CCCch--HHHHHHHHhcC---CCCcC------------cccccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 65311 11111111100 00000 01112356789999999999999999999875
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-21 Score=200.75 Aligned_cols=184 Identities=22% Similarity=0.264 Sum_probs=140.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|...+..++|++++++++.+......+++|||+.+++|.+++... +..+++.....++.++++|++|||.
T Consensus 46 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---- 121 (316)
T cd05574 46 KRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHL---- 121 (316)
T ss_pred HHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHH----
Confidence 34667888999999999999999998888899999999999999999753 3568889999999999999999994
Q ss_pred CCeeecCCCCccc------------------------------------------------------ccccccccccCcc
Q 040540 526 APIIHCEGEDSVT------------------------------------------------------QTTTMATIGYMAP 551 (669)
Q Consensus 526 ~~i~h~d~~~~~~------------------------------------------------------~~~~~gt~~y~aP 551 (669)
.+++|+|+++... .....||..|+||
T Consensus 122 ~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aP 201 (316)
T cd05574 122 LGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAP 201 (316)
T ss_pred CCeeccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCH
Confidence 4799999984200 0012478889999
Q ss_pred ccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHH
Q 040540 552 EYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMD 631 (669)
Q Consensus 552 E~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (669)
|+..+..++.++||||||+++|||++|+.||....... .+.... ..... .+........+.+
T Consensus 202 E~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~-~~~~~~----~~~~~-------------~~~~~~~~~~~~~ 263 (316)
T cd05574 202 EVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDE-TFSNIL----KKEVT-------------FPGSPPVSSSARD 263 (316)
T ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHH-HHHHHh----cCCcc-------------CCCccccCHHHHH
Confidence 99988889999999999999999999999986532211 111100 00000 0011124567889
Q ss_pred HHhhcccCCCCCCCC----HHHHHH
Q 040540 632 LALDCCMESPDKRMH----MTDAAA 652 (669)
Q Consensus 632 l~~~c~~~~P~~Rps----~~~v~~ 652 (669)
++.+||+.+|++||+ ++|+++
T Consensus 264 li~~~l~~~p~~R~s~~~~~~~ll~ 288 (316)
T cd05574 264 LIRKLLVKDPSKRLGSKRGAAEIKQ 288 (316)
T ss_pred HHHHHccCCHhHCCCchhhHHHHHc
Confidence 999999999999999 555544
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-22 Score=186.17 Aligned_cols=190 Identities=19% Similarity=0.241 Sum_probs=148.6
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
...+|++++..++ |+||+.++.++.++...|+|||-|.+|+|...|.++ ..+.+.+...+..+||.||+|||. +
T Consensus 121 RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGplLshI~~~-~~F~E~EAs~vvkdia~aLdFlH~----k 195 (463)
T KOG0607|consen 121 RVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQKR-KHFNEREASRVVKDIASALDFLHT----K 195 (463)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchHHHHHHHh-hhccHHHHHHHHHHHHHHHHHHhh----c
Confidence 4557889888884 999999999999999999999999999999999864 457888999999999999999995 4
Q ss_pred CeeecCCCCc-----------------------------------ccccccccccccCcccccc-----CCCcCccccch
Q 040540 527 PIIHCEGEDS-----------------------------------VTQTTTMATIGYMAPEYGS-----EGIVSAKCDVY 566 (669)
Q Consensus 527 ~i~h~d~~~~-----------------------------------~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~ 566 (669)
+|.|||+|+. ....+.+|+..|||||+.. ...|+.++|.|
T Consensus 196 gIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlw 275 (463)
T KOG0607|consen 196 GIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLW 275 (463)
T ss_pred CcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHH
Confidence 8999999943 0122346889999999753 24599999999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCCc---------cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcc
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGEM---------SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCC 637 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~ 637 (669)
|+|||+|-|++|-+||.+...++- .-+.-+-+.+++...+.- ...|.+.+....+++...+
T Consensus 276 SLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFP----------dkdWahIS~eakdlisnLl 345 (463)
T KOG0607|consen 276 SLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFP----------DKDWAHISSEAKDLISNLL 345 (463)
T ss_pred HHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCC----------hhhhHHhhHHHHHHHHHHH
Confidence 999999999999999976544321 011112222222222211 1247788999999999999
Q ss_pred cCCCCCCCCHHHHHH
Q 040540 638 MESPDKRMHMTDAAA 652 (669)
Q Consensus 638 ~~~P~~Rps~~~v~~ 652 (669)
.++|.+|-++.+|++
T Consensus 346 vrda~~rlsa~~vln 360 (463)
T KOG0607|consen 346 VRDAKQRLSAAQVLN 360 (463)
T ss_pred hccHHhhhhhhhccC
Confidence 999999999998876
|
|
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-21 Score=208.65 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=131.3
Q ss_pred chhhhhhccccc------cccceeccccccc-cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 450 DSECEVLRNVRH------RNLIKIISSCSNP-DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 450 ~~e~~~l~~l~h------~niv~l~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
..|+..+..++| .+++.+++++... ...++|||++ +++|.+++.+. ..+++.....|+.|++.||+|||+.
T Consensus 173 ~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~~~l~~~-~~l~~~~~~~i~~qi~~aL~yLH~~ 250 (467)
T PTZ00284 173 KIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDWIMKH-GPFSHRHLAQIIFQTGVALDYFHTE 250 (467)
T ss_pred HHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEecc-CCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555544 4577777777653 4678999988 67899998754 4688999999999999999999942
Q ss_pred CCCCCeeecCCCCccc--------------------------------------ccccccccccCccccccCCCcCcccc
Q 040540 523 HSSAPIIHCEGEDSVT--------------------------------------QTTTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~~--------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
.+|+|||+|+... ....+||+.|||||++.+..|+.++|
T Consensus 251 ---~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~D 327 (467)
T PTZ00284 251 ---LHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTD 327 (467)
T ss_pred ---CCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHH
Confidence 4799999995310 11235899999999999988999999
Q ss_pred chhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHh---CCCCcc---------ccc------cccccchh-h-----hhh
Q 040540 565 VYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES---LPHRLS---------EVV------DTNLVREE-Q-----AFS 620 (669)
Q Consensus 565 v~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~---~~~~~~---------~~~------~~~~~~~~-~-----~~~ 620 (669)
||||||++|||+||+.||..... ......+... ++..+. ++. .+...... . ...
T Consensus 328 iwSlGvil~elltG~~pf~~~~~--~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (467)
T PTZ00284 328 MWSMGCIIYELYTGKLLYDTHDN--LEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPV 405 (467)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccch
Confidence 99999999999999999975321 1111111111 010000 000 00000000 0 000
Q ss_pred hhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 621 AKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 621 ~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
........+.+++.+|++.||.+|||++|+++
T Consensus 406 ~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~ 437 (467)
T PTZ00284 406 REVIRDDLLCDLIYGLLHYDRQKRLNARQMTT 437 (467)
T ss_pred hhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence 00112346789999999999999999999986
|
|
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-21 Score=191.53 Aligned_cols=183 Identities=23% Similarity=0.248 Sum_probs=141.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|||++++++.+......++|+||+++++|.+++... ..+++.....++.++++|+.|||. .
T Consensus 45 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lh~----~ 119 (258)
T cd05578 45 RNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQK-VKFSEEQVKFWICEIVLALEYLHS----K 119 (258)
T ss_pred HHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHh----C
Confidence 45667889999999999999999999888999999999999999999754 568899999999999999999994 4
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+++|+|+++.. ......|+..|+|||+.....++.++||||||+++|||++|+.||
T Consensus 120 ~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~ 199 (258)
T cd05578 120 GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPY 199 (258)
T ss_pred CeeccCCCHHHeEEcCCCCEEEeecccccccCCCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCC
Confidence 79999988431 011234788999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH--HHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM--TDAA 651 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~--~~v~ 651 (669)
...... ...+....... .... .+...+..+.+++.+||..||.+||++ +|++
T Consensus 200 ~~~~~~---~~~~~~~~~~~-~~~~-------------~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~ 253 (258)
T cd05578 200 RGHSRT---IRDQIRAKQET-ADVL-------------YPATWSTEAIDAINKLLERDPQKRLGDNLKDLK 253 (258)
T ss_pred CCCCcc---HHHHHHHHhcc-cccc-------------CcccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence 764321 11111111110 0000 012233567899999999999999999 5553
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-21 Score=194.47 Aligned_cols=198 Identities=19% Similarity=0.117 Sum_probs=137.5
Q ss_pred cCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|+..+..++|+|++++++++... ...++||||++ ++|.+++......+++.....++.|+++||+|||.
T Consensus 50 ~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---- 124 (293)
T cd07843 50 TSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE-HDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHD---- 124 (293)
T ss_pred hHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcC-cCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 345688899999999999999988776 78899999998 59999987655568999999999999999999995
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCCC-cCccccchhhHHHHHHHHhCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+++|+|+++.. ......+++.|+|||.+.+.. ++.++||||+|+++|||++|+
T Consensus 125 ~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~ 204 (293)
T cd07843 125 NWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKK 204 (293)
T ss_pred CCeeeccCCHHHEEECCCCcEEEeecCceeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCC
Confidence 479999988430 011234678899999886644 689999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCC----cc------c---cccccccchhhhhhhhHH-HHHHHHHHHhhcccCCCCCCC
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHR----LS------E---VVDTNLVREEQAFSAKMD-CLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~----~~------~---~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~c~~~~P~~Rp 645 (669)
.||...... ....-+....... +. . ...............+.. ....+.+++.+|++.+|++||
T Consensus 205 ~~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~ 282 (293)
T cd07843 205 PLFPGKSEI--DQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRI 282 (293)
T ss_pred CCCCCCChH--HHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccC
Confidence 998653211 1110000000000 00 0 000000000000000111 245678999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
|+.|+++
T Consensus 283 t~~ell~ 289 (293)
T cd07843 283 SAEDALK 289 (293)
T ss_pred CHHHHhc
Confidence 9999975
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-21 Score=181.14 Aligned_cols=180 Identities=20% Similarity=0.210 Sum_probs=136.0
Q ss_pred hhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeec
Q 040540 453 CEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC 531 (669)
Q Consensus 453 ~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~ 531 (669)
..++.+.. +|.||+.+|++..+..+++.||.|. ..+..+++.-..++++.-.-++...+.+||.||... .+||||
T Consensus 141 ldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs-~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeK---H~viHR 216 (391)
T KOG0983|consen 141 LDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS-TCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEK---HGVIHR 216 (391)
T ss_pred hhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH-HHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHh---cceeec
Confidence 33444443 7999999999999999999999985 456666666566778777788999999999999864 589999
Q ss_pred CCCCc------------------------ccccccccccccCccccccC---CCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 532 EGEDS------------------------VTQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 532 d~~~~------------------------~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
|+|++ ...+...|-+.|||||-+.- .+|+-++|||||||+++|++||+.||..
T Consensus 217 DvKPSNILlDe~GniKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~ 296 (391)
T KOG0983|consen 217 DVKPSNILLDERGNIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKG 296 (391)
T ss_pred ccCccceEEccCCCEEeecccccceeecccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCC
Confidence 99965 22344568999999998864 4589999999999999999999999987
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
-..+...+...+... |. . .+.....+.++++++..|+.+|+.+||...++++
T Consensus 297 c~tdFe~ltkvln~e-PP--------~-------L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~ 348 (391)
T KOG0983|consen 297 CKTDFEVLTKVLNEE-PP--------L-------LPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLE 348 (391)
T ss_pred CCccHHHHHHHHhcC-CC--------C-------CCcccCcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence 444433333322211 11 1 1112235677899999999999999999888765
|
|
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-21 Score=195.21 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=105.7
Q ss_pred cCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcC--------CCccCHHHHHHHHHhHHhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSH--------NYFLDILERLNIMIDVGSALE 517 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~--------~~~l~~~~~~~i~~~i~~~l~ 517 (669)
.+..|+.++..++|+|++++++++.. +...++||||++ +++.+++... ...+++.....++.|++.||+
T Consensus 44 ~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~ 122 (317)
T cd07867 44 SACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIH 122 (317)
T ss_pred HHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHH
Confidence 35578999999999999999998743 456789999987 5788877421 224788888899999999999
Q ss_pred hhhcCCCCCCeeecCCCCccc--------------------------------ccccccccccCccccccC-CCcCcccc
Q 040540 518 YLRHGHSSAPIIHCEGEDSVT--------------------------------QTTTMATIGYMAPEYGSE-GIVSAKCD 564 (669)
Q Consensus 518 ~lh~~~~~~~i~h~d~~~~~~--------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~D 564 (669)
|||. .+++|||+|+... .....||+.|+|||++.+ ..++.++|
T Consensus 123 ~lH~----~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~D 198 (317)
T cd07867 123 YLHA----NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAID 198 (317)
T ss_pred HHHh----CCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHH
Confidence 9994 4799999984310 011247889999998876 45899999
Q ss_pred chhhHHHHHHHHhCCCCCCc
Q 040540 565 VYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 565 v~s~Gvil~el~tg~~p~~~ 584 (669)
||||||++|||+||+.||..
T Consensus 199 iwSlG~il~el~tg~~~f~~ 218 (317)
T cd07867 199 IWAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred HHhHHHHHHHHHhCCCCccc
Confidence 99999999999999999864
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-21 Score=179.21 Aligned_cols=192 Identities=22% Similarity=0.335 Sum_probs=143.7
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.++|..|+-.++...|||+..++++|..+....++..|||.|+|+..+++.. ..++..+.++++.++|+|++|||.-.
T Consensus 231 srdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhsle- 309 (448)
T KOG0195|consen 231 SRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLE- 309 (448)
T ss_pred cchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcc-
Confidence 4689999999999999999999999999988899999999999999999743 35677899999999999999999542
Q ss_pred CCCeeec---CC------------------CCcccccccccccccCccccccCCCc---CccccchhhHHHHHHHHhCCC
Q 040540 525 SAPIIHC---EG------------------EDSVTQTTTMATIGYMAPEYGSEGIV---SAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 525 ~~~i~h~---d~------------------~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++-+ +. |-+.......-.+.||+||.+....- -.++|+|||+|++||+.|+..
T Consensus 310 --p~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trev 387 (448)
T KOG0195|consen 310 --PMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREV 387 (448)
T ss_pred --hhhhhhhcccceEEecchhhhheecccceeeeeccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhcccc
Confidence 23221 11 11111222235789999999877553 358999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
||.+...-+..+.-.+ +.++--+ ++.....+.+++.-|.++||.+||.+..|+-.|++..
T Consensus 388 pfadlspmecgmkial-----eglrv~i-------------ppgis~hm~klm~icmnedpgkrpkfdmivpilekm~ 447 (448)
T KOG0195|consen 388 PFADLSPMECGMKIAL-----EGLRVHI-------------PPGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI 447 (448)
T ss_pred ccccCCchhhhhhhhh-----ccccccC-------------CCCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence 9987543332222111 1111112 2334456788999999999999999999999888753
|
|
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-21 Score=191.20 Aligned_cols=182 Identities=19% Similarity=0.211 Sum_probs=135.7
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|+|++++++++... ...+++|||+++++|.+++.+. ..+++....+++.+++.|++|||.
T Consensus 49 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~l~~~l~~lH~--- 124 (265)
T cd06652 49 NALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSY-GALTENVTRKYTRQILEGVSYLHS--- 124 (265)
T ss_pred HHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 3566788999999999999999987653 4567899999999999999754 347888889999999999999995
Q ss_pred CCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+++.. ......|+..|+|||...+..++.++|||||||++|||+
T Consensus 125 -~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~ 203 (265)
T cd06652 125 -NMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEML 203 (265)
T ss_pred -CCEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHh
Confidence 479999988420 011124788999999998888899999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||..... ........... . .+. .+......+.+++.+|+. +|++||+++|+++
T Consensus 204 ~g~~p~~~~~~----~~~~~~~~~~~-~----~~~---------~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~ 260 (265)
T cd06652 204 TEKPPWAEFEA----MAAIFKIATQP-T----NPV---------LPPHVSDHCRDFLKRIFV-EAKLRPSADELLR 260 (265)
T ss_pred hCCCCCCccch----HHHHHHHhcCC-C----CCC---------CchhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence 99999864211 11111111000 0 010 122344567788999985 9999999999875
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-21 Score=190.72 Aligned_cols=178 Identities=17% Similarity=0.110 Sum_probs=133.2
Q ss_pred ccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCc
Q 040540 457 RNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDS 536 (669)
Q Consensus 457 ~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~ 536 (669)
...+|+|++++++.+...+..++|+||+++++|.+++... ..+++.....++.|+++|+.|+|. .+++|+|+++.
T Consensus 52 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~----~~i~H~dl~p~ 126 (260)
T cd05611 52 IQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTL-GGLPEDWAKQYIAEVVLGVEDLHQ----RGIIHRDIKPE 126 (260)
T ss_pred hcCCCCCeeeeeeeEEcCCeEEEEEeccCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CCeecCCCCHH
Confidence 4458999999999998888999999999999999999753 457888899999999999999994 47999998853
Q ss_pred cc---------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHH
Q 040540 537 VT---------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRW 595 (669)
Q Consensus 537 ~~---------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~ 595 (669)
.. .....|+..|+|||...+..++.++||||||+++|||+||+.||..... ..+..-
T Consensus 127 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~ 204 (260)
T cd05611 127 NLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP--DAVFDN 204 (260)
T ss_pred HeEECCCCcEEEeecccceeccccccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH--HHHHHH
Confidence 10 1122478899999999887789999999999999999999999865321 111111
Q ss_pred HHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 596 VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
...... ... ... .......+.+++.+||+.+|++||++.++.+.+.
T Consensus 205 ~~~~~~-~~~----~~~---------~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~ 250 (260)
T cd05611 205 ILSRRI-NWP----EEV---------KEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKS 250 (260)
T ss_pred HHhccc-CCC----Ccc---------cccCCHHHHHHHHHHccCCHHHccCCCcHHHHHc
Confidence 110000 000 000 1123456789999999999999998876655443
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-21 Score=191.82 Aligned_cols=182 Identities=18% Similarity=0.179 Sum_probs=137.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.+++.++|||++++++.+...+..++||||+++++|.+++.+.. ..+++..+..++.++++|+.|||. .
T Consensus 39 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~----~ 114 (277)
T cd05577 39 MALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQ----R 114 (277)
T ss_pred HHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 44568899999999999999999988888999999999999999997643 358899999999999999999995 4
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+++|+|+++.. ......|+..|+|||+..+..++.++|||||||++|||++|+.||
T Consensus 115 ~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~ 194 (277)
T cd05577 115 RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPF 194 (277)
T ss_pred CcccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCC
Confidence 79999988431 011124678899999988888999999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
....... . ...+........ . ..+......+.+++.+||+.+|++||+.++
T Consensus 195 ~~~~~~~-~-~~~~~~~~~~~~-----~---------~~~~~~~~~~~~li~~~l~~~p~~R~~~~~ 245 (277)
T cd05577 195 RQRKEKV-E-KEELKRRTLEMA-----V---------EYPDKFSPEAKDLCEALLQKDPEKRLGCRG 245 (277)
T ss_pred CCCcccc-c-HHHHHhcccccc-----c---------cCCccCCHHHHHHHHHHccCChhHccCCCc
Confidence 6532211 1 111111110000 0 011223456789999999999999995444
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=190.69 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=132.3
Q ss_pred hccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCC
Q 040540 456 LRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGED 535 (669)
Q Consensus 456 l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~ 535 (669)
+....|++++.+++.+...+..++||||+++|+|.+++.. ...+++..+..++.++++|+.|||. .+++|+|+++
T Consensus 51 ~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~~-~~~l~~~~~~~~~~ql~~~l~~lH~----~~i~H~di~p 125 (278)
T cd05606 51 VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQ-HGVFSEAEMRFYAAEIILGLEHMHN----RFVVYRDLKP 125 (278)
T ss_pred HHhCCCCcEeeeeeeeecCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH----CCEEcCCCCH
Confidence 4445799999999999888889999999999999999875 3468999999999999999999994 4799999984
Q ss_pred cc-----------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCCCCcCCCCCcc
Q 040540 536 SV-----------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMS 591 (669)
Q Consensus 536 ~~-----------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~ 591 (669)
.. ......|+..|+|||++.++ .++.++||||+||++|||++|+.||.........
T Consensus 126 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~ 205 (278)
T cd05606 126 ANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH 205 (278)
T ss_pred HHEEECCCCCEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchH
Confidence 31 01123589999999998754 5889999999999999999999999753221110
Q ss_pred HHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 592 LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
........ ....+ +...+..+.+++.+|+..+|++|| ++.|+++
T Consensus 206 ~~~~~~~~--------~~~~~---------~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~ 254 (278)
T cd05606 206 EIDRMTLT--------MAVEL---------PDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 254 (278)
T ss_pred HHHHHhhc--------cCCCC---------CCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence 00000000 00111 112345678999999999999999 8888875
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-21 Score=195.63 Aligned_cols=187 Identities=21% Similarity=0.209 Sum_probs=135.6
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhh---hc-CCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL---YS-HNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l---~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+..+.++. |+|++++++++..+...+++|||++ +++.++. .. ....+++.....++.++++|++|||+.
T Consensus 48 ~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 126 (288)
T cd06616 48 RLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMD-ISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEE 126 (288)
T ss_pred HHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEeccc-CCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 4566888888886 9999999999988888899999987 4554433 22 235688889999999999999999953
Q ss_pred CCCCCeeecCCCCcc------------------------cccccccccccCccccccCC---CcCccccchhhHHHHHHH
Q 040540 523 HSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEG---IVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~s~Gvil~el 575 (669)
.+++|+|+++.. ......|+..|+|||++.+. .++.++|||||||++|||
T Consensus 127 ---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el 203 (288)
T cd06616 127 ---LKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEV 203 (288)
T ss_pred ---CCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHH
Confidence 479999998431 01122478899999998765 689999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++|+.||.... .....+........ +.+.. ..+...+..+.+++.+||+.+|++|||+.+|++
T Consensus 204 ~~g~~p~~~~~----~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~ 266 (288)
T cd06616 204 ATGKFPYPKWN----SVFDQLTQVVKGDP-----PILSN-----SEEREFSPSFVNFINLCLIKDESKRPKYKELLE 266 (288)
T ss_pred HhCCCCchhcc----hHHHHHhhhcCCCC-----CcCCC-----cCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99999986532 11111111111100 11110 011234556889999999999999999999977
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-21 Score=197.19 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=135.6
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++...+|++++.+++++...+..++||||+++|+|.+++.+....+++.....++.|++.||+|+|. .+
T Consensus 47 ~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~----~~ 122 (331)
T cd05624 47 CFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQ----LH 122 (331)
T ss_pred HHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 35567888888999999999999999999999999999999999998655568888888999999999999994 58
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccC-----CCcCccccchhhHHHHHHHH
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE-----GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gvil~el~ 576 (669)
|+|||+|+.. ......||+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 123 iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell 202 (331)
T cd05624 123 YVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEML 202 (331)
T ss_pred eeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhh
Confidence 9999998430 0011358999999998865 45788999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC--CCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK--RMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~--Rps~~~v~~ 652 (669)
+|+.||..... .+...........-.+.+. ..+.+..+.+++.+|+..++++ |++++++.+
T Consensus 203 ~g~~Pf~~~~~-----~~~~~~i~~~~~~~~~p~~----------~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~ 265 (331)
T cd05624 203 YGETPFYAESL-----VETYGKIMNHEERFQFPSH----------ITDVSEEAKDLIQRLICSRERRLGQNGIEDFKK 265 (331)
T ss_pred hCCCCccCCCH-----HHHHHHHHcCCCcccCCCc----------cccCCHHHHHHHHHHccCchhhcCCCCHHHHhc
Confidence 99999965221 1111111000000000000 1123456788999988866544 467777764
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-21 Score=198.69 Aligned_cols=196 Identities=21% Similarity=0.195 Sum_probs=134.5
Q ss_pred cCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+..+..++|+|++++++++... ...++++|++ +++|.+++.. ..+++.....++.|+++||+|||.
T Consensus 60 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~ 136 (343)
T cd07878 60 RTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVKC--QKLSDEHVQFLIYQLLRGLKYIHS 136 (343)
T ss_pred HHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999999877532 3457889988 6899988864 358889999999999999999994
Q ss_pred CCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhC
Q 040540 522 GHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+|+|||+|+.. ......||..|+|||++.+ ..++.++||||+||++|||++|
T Consensus 137 ----~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g 212 (343)
T cd07878 137 ----AGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKG 212 (343)
T ss_pred ----CCeecccCChhhEEECCCCCEEEcCCccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHC
Confidence 479999999531 1122358999999999876 5688999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccc---cc--------cccchh-hhh-hhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVV---DT--------NLVREE-QAF-SAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~--------~~~~~~-~~~-~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
+.||..... ...+..+.... .....+.. .. .+.... ... .........+.+++.+|+..||.+||
T Consensus 213 ~~pf~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~ 290 (343)
T cd07878 213 KALFPGNDY-IDQLKRIMEVV-GTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRI 290 (343)
T ss_pred CCCCCCCCH-HHHHHHHHHHh-CCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCC
Confidence 999865211 11111111110 00000000 00 000000 000 00011233578999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
|+.|+++
T Consensus 291 s~~ell~ 297 (343)
T cd07878 291 SASEALA 297 (343)
T ss_pred CHHHHhc
Confidence 9999985
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-21 Score=192.25 Aligned_cols=176 Identities=22% Similarity=0.229 Sum_probs=130.6
Q ss_pred hccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecC
Q 040540 456 LRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE 532 (669)
Q Consensus 456 l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d 532 (669)
++..+|+|++++++++..+...+++|||++ |+|.+++.. .+..+++.....++.|++.|++|||.. .+++|+|
T Consensus 54 ~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~~i~h~d 129 (283)
T cd06617 54 MRSVDCPYTVTFYGALFREGDVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSK---LSVIHRD 129 (283)
T ss_pred HHHcCCCCeeeeeEEEecCCcEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhc---CCeecCC
Confidence 556689999999999988888999999997 788888754 334688999999999999999999942 3799999
Q ss_pred CCCcc------------------------cccccccccccCccccccC----CCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 533 GEDSV------------------------TQTTTMATIGYMAPEYGSE----GIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 533 ~~~~~------------------------~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
+++.. ......|+..|+|||.+.+ ..++.++|||||||++|||++|+.||..
T Consensus 130 lkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~ 209 (283)
T cd06617 130 VKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDS 209 (283)
T ss_pred CCHHHEEECCCCCEEEeecccccccccccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCc
Confidence 98431 0111347888999998764 4468899999999999999999999865
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.......+........ +.+. ....+..+.+++.+||..+|++||++.++++
T Consensus 210 ~~~~~~~~~~~~~~~~---------~~~~--------~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~ 260 (283)
T cd06617 210 WKTPFQQLKQVVEEPS---------PQLP--------AEKFSPEFQDFVNKCLKKNYKERPNYPELLQ 260 (283)
T ss_pred cccCHHHHHHHHhcCC---------CCCC--------ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 3221111222111110 0010 0112346789999999999999999999986
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-21 Score=193.40 Aligned_cols=179 Identities=21% Similarity=0.190 Sum_probs=137.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++.+......++||||+++++|.+++... ..+++..+..++.+++.|+.|||. .+
T Consensus 47 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qil~~l~~lH~----~~ 121 (290)
T cd05580 47 HVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKS-GRFPEPVARFYAAQVVLALEYLHS----LD 121 (290)
T ss_pred HHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567889999999999999999999888999999999999999999754 568888999999999999999995 58
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
++|+|+++.. ......|++.|+|||...+..++.++||||||+++|||++|+.||...
T Consensus 122 i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 201 (290)
T cd05580 122 IVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDD 201 (290)
T ss_pred EecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 9999988431 011224788999999988878889999999999999999999998653
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAA 651 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~ 651 (669)
. .......... ... .+ +......+.+++.+||..||.+|| +++|++
T Consensus 202 ~--~~~~~~~~~~---~~~------~~---------~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~ 252 (290)
T cd05580 202 N--PIQIYEKILE---GKV------RF---------PSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIK 252 (290)
T ss_pred C--HHHHHHHHhc---CCc------cC---------CccCCHHHHHHHHHHccCCHHHccCcccCCHHHHH
Confidence 2 1111111110 000 00 112234678999999999999999 555554
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-20 Score=188.54 Aligned_cols=182 Identities=23% Similarity=0.253 Sum_probs=141.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|+..++.++|+|++++++.+......++||||+++++|.+++.+. +..+++.....++.++++|+.|||.
T Consensus 45 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~--- 121 (256)
T cd08530 45 DAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHE--- 121 (256)
T ss_pred HHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh---
Confidence 4456888899999999999999988888899999999999999998752 3457888999999999999999994
Q ss_pred CCCeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 525 SAPIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 525 ~~~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
.+++|+|+++.. ......|+..|++||...+..++.++|+||+|+++|||++|+.|
T Consensus 122 -~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p 200 (256)
T cd08530 122 -QKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPP 200 (256)
T ss_pred -CCcccCCCCcceEEEecCCcEEEeeccchhhhccCCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 478999988541 01112478899999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..... ..+...+... ... . .+.....++.+++.+|++.+|++||++.|+++
T Consensus 201 ~~~~~~--~~~~~~~~~~---~~~-----~---------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 252 (256)
T cd08530 201 FEARSM--QDLRYKVQRG---KYP-----P---------IPPIYSQDLQNFIRSMLQVKPKLRPNCDKILA 252 (256)
T ss_pred CCCCCH--HHHHHHHhcC---CCC-----C---------CchhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 865321 1111111110 000 0 11234556889999999999999999999875
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-21 Score=188.13 Aligned_cols=170 Identities=18% Similarity=0.109 Sum_probs=128.4
Q ss_pred hhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeec
Q 040540 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC 531 (669)
Q Consensus 452 e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~ 531 (669)
|...+....|||++++++.+......+++|||+++|+|.+++.+. ..+++.....++.++++|++|+|. .+++|+
T Consensus 35 ~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~ql~~~l~~lH~----~~i~H~ 109 (237)
T cd05576 35 ERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKF-LNIPEECVKRWAAEMVVALDALHR----EGIVCR 109 (237)
T ss_pred HHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHh----CCeecc
Confidence 333344456999999999998888999999999999999999754 358999999999999999999994 479999
Q ss_pred CCCCccc----------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCC
Q 040540 532 EGEDSVT----------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589 (669)
Q Consensus 532 d~~~~~~----------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~ 589 (669)
|+|+... .....++..|+|||......++.++||||+||++|||++|+.|+.......
T Consensus 110 dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~ 189 (237)
T cd05576 110 DLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI 189 (237)
T ss_pred CCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc
Confidence 9995310 011235667999999888888999999999999999999998864311000
Q ss_pred ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 590 MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
.......+ +......+.+++.+|++.||++||++.++
T Consensus 190 ---------------~~~~~~~~---------~~~~~~~~~~li~~~l~~dp~~R~~~~~~ 226 (237)
T cd05576 190 ---------------NTHTTLNI---------PEWVSEEARSLLQQLLQFNPTERLGAGVA 226 (237)
T ss_pred ---------------ccccccCC---------cccCCHHHHHHHHHHccCCHHHhcCCCcc
Confidence 00000000 11233457899999999999999997444
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-21 Score=186.34 Aligned_cols=190 Identities=18% Similarity=0.280 Sum_probs=145.7
Q ss_pred Cchhhhhhccccccccceecccccccc-ccceeeccCCCCChHHhhh-----c--CCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLY-----S--HNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~-----~--~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+..|.-.+..+.|||+.++.+.+..+. ..+.+|.++.-|+|..+|. + ..+.+...+...++.|++.|++|||
T Consensus 334 ~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh 413 (563)
T KOG1024|consen 334 LLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH 413 (563)
T ss_pred HHHHHHHHhcCcCCCccceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 445556677888999999999987754 4567889999999999998 2 2235667788899999999999999
Q ss_pred cCCCCCCeeecCCCCc---------------cc-----c--ccccc-----ccccCccccccCCCcCccccchhhHHHHH
Q 040540 521 HGHSSAPIIHCEGEDS---------------VT-----Q--TTTMA-----TIGYMAPEYGSEGIVSAKCDVYSYGVLLM 573 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~---------------~~-----~--~~~~g-----t~~y~aPE~~~~~~~~~~~Dv~s~Gvil~ 573 (669)
. .++||.|+..- .- + ....| ...||+||.+....|+.++|||||||++|
T Consensus 414 ~----~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllW 489 (563)
T KOG1024|consen 414 N----HGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLW 489 (563)
T ss_pred h----cCcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHH
Confidence 4 58999887621 00 0 00012 35799999999999999999999999999
Q ss_pred HHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 574 ETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 574 el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||+| |+.||.+..+ ..+..+++. +.|...|-.|++++..++.-||+..|++||++++++.
T Consensus 490 ELmtlg~~PyaeIDP--fEm~~ylkd-----------------GyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~ 550 (563)
T KOG1024|consen 490 ELMTLGKLPYAEIDP--FEMEHYLKD-----------------GYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVI 550 (563)
T ss_pred HHHhcCCCCccccCH--HHHHHHHhc-----------------cceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHH
Confidence 9998 8999976432 223333322 2233345678888999999999999999999999999
Q ss_pred HHHHhHHHh
Q 040540 653 KLKKIKVKF 661 (669)
Q Consensus 653 ~l~~~~~~~ 661 (669)
-|.++...+
T Consensus 551 cLseF~~ql 559 (563)
T KOG1024|consen 551 CLSEFHTQL 559 (563)
T ss_pred HHHHHHHHH
Confidence 999876543
|
|
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-21 Score=179.84 Aligned_cols=196 Identities=21% Similarity=0.202 Sum_probs=137.7
Q ss_pred Cchhhhhhccccccccceeccccc--cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCS--NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+|+.++.+++|||||.+-.... +-+.+|+|||||. -+|..++..-+.++...+..-++.|+.+|++|||+ .
T Consensus 122 sLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~~E-hDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~----~ 196 (419)
T KOG0663|consen 122 SLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEYVE-HDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHD----N 196 (419)
T ss_pred hHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHHHH-hhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhh----c
Confidence 347899999999999999866553 3455899999998 59999998767778888888899999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
-|+|||+|.+. ..+..+-|..|.|||.+.+. .|+.+.|+||+|||+.||+++++
T Consensus 197 wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kP 276 (419)
T KOG0663|consen 197 WILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKP 276 (419)
T ss_pred eeEecccchhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCC
Confidence 79999999541 12334568899999998875 49999999999999999999997
Q ss_pred CCCcCCCCCccHHHHHHHhC--CCC--cccccc-ccc-----cc-----hhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 581 PTDEMFTGEMSLRRWVKESL--PHR--LSEVVD-TNL-----VR-----EEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~--~~~--~~~~~~-~~~-----~~-----~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
-|.+.. +.+..+-+-..+ |.. +..+-. +.. .. -..+|+.- .......++....+..||.+|-
T Consensus 277 lf~G~s--E~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~-~lse~g~~Lln~llt~dP~kR~ 353 (419)
T KOG0663|consen 277 LFPGKS--EIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGAL-SLSEQGFDLLNKLLTYDPGKRI 353 (419)
T ss_pred CCCCCc--hHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhcccc-ccchhHHHHHHHHhccCccccc
Confidence 775521 221111111111 110 000000 000 00 00111111 1335678999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
|++|.++
T Consensus 354 tA~~~L~ 360 (419)
T KOG0663|consen 354 TAEDGLK 360 (419)
T ss_pred cHHHhhc
Confidence 9999875
|
|
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-21 Score=193.90 Aligned_cols=186 Identities=20% Similarity=0.243 Sum_probs=140.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++.+......+++|||+++++|.+++.+.+ .+++..+..++.++++|++|||. .
T Consensus 38 ~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~lH~----~ 112 (265)
T cd05579 38 DQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVG-SLDEDVARIYIAEIVLALEYLHS----N 112 (265)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH----c
Confidence 356678888999999999999999888888999999999999999998644 68999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------------cccccccccccCccccccCCCcCccccchhhHHHHH
Q 040540 527 PIIHCEGEDSV---------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLM 573 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~ 573 (669)
+++|+|+++.. ......++..|+|||......++.++||||||+++|
T Consensus 113 ~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~ 192 (265)
T cd05579 113 GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILY 192 (265)
T ss_pred CeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHH
Confidence 79999988420 001124677899999998888899999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
|+++|+.||..... ......... .... .+........+.+++.+||+.+|++|||+.+|.+.
T Consensus 193 ~l~~g~~p~~~~~~--~~~~~~~~~---~~~~-------------~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~ 254 (265)
T cd05579 193 EFLVGIPPFHGETP--EEIFQNILN---GKIE-------------WPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEI 254 (265)
T ss_pred HHHhCCCCCCCCCH--HHHHHHHhc---CCcC-------------CCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHH
Confidence 99999999865321 111111111 0000 00000124567899999999999999999666554
Q ss_pred HH
Q 040540 654 LK 655 (669)
Q Consensus 654 l~ 655 (669)
|+
T Consensus 255 l~ 256 (265)
T cd05579 255 KN 256 (265)
T ss_pred hc
Confidence 43
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=190.51 Aligned_cols=197 Identities=16% Similarity=0.195 Sum_probs=139.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|+..++.++|+|++++++.+...+..++||||++ +++.+++.... ..+++....+++.+++.|++|||.
T Consensus 44 ~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---- 118 (284)
T cd07836 44 TAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMD-KDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHE---- 118 (284)
T ss_pred HHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCC-ccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH----
Confidence 34568899999999999999999998888999999998 58998887543 468999999999999999999994
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+++|+|+++.. ......++..|++||++.+. .++.++|||||||++|||++|+
T Consensus 119 ~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~ 198 (284)
T cd07836 119 NRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGR 198 (284)
T ss_pred CCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 479999998431 01123467889999987653 4788999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhC-C-----------CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 580 RPTDEMFTGEMSLRRWVKESL-P-----------HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.||....... .......... + ....... +..... ............+.+++.+|++.||++||++
T Consensus 199 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~ 275 (284)
T cd07836 199 PLFPGTNNED-QLLKIFRIMGTPTESTWPGISQLPEYKPTF-PRYPPQ-DLQQLFPHADPLGIDLLHRLLQLNPELRISA 275 (284)
T ss_pred CCCCCCCcHH-HHHHHHHHhCCCChhhHHHHhcCchhcccc-cCCChH-HHHHHhhhcCcHHHHHHHHHhcCCcccCCCH
Confidence 9987532211 1111110000 0 0000000 000000 0000012335678899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 276 ~~~l~ 280 (284)
T cd07836 276 HDALQ 280 (284)
T ss_pred HHHhc
Confidence 99874
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=193.22 Aligned_cols=199 Identities=20% Similarity=0.227 Sum_probs=133.7
Q ss_pred Cchhhhhhccccccccceeccccccccc--------cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDF--------KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~--------~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+..|+..++.++|||++++++.|..... .++||||+. +++.+++......+++.+...++.|++.|++|||
T Consensus 58 ~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH 136 (310)
T cd07865 58 ALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCE-HDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIH 136 (310)
T ss_pred HHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEEEEcCCC-cCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999998765443 389999997 5888888765556899999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc-----------------------c------ccccccccccCccccccCC-CcCccccchhhHH
Q 040540 521 HGHSSAPIIHCEGEDSV-----------------------T------QTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGV 570 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~-----------------------~------~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv 570 (669)
. .+++|+|+++.. . .....++..|+|||...+. .++.++||||||+
T Consensus 137 ~----~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ 212 (310)
T cd07865 137 R----NKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGC 212 (310)
T ss_pred H----CCeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHH
Confidence 5 479999988430 0 0112367789999987664 3788999999999
Q ss_pred HHHHHHhCCCCCCcCCCCC-ccHHHHHHHhCCCCcc-cc-----ccc-cccchhh-hhh---hhHHHHHHHHHHHhhccc
Q 040540 571 LLMETFTRKRPTDEMFTGE-MSLRRWVKESLPHRLS-EV-----VDT-NLVREEQ-AFS---AKMDCLLSIMDLALDCCM 638 (669)
Q Consensus 571 il~el~tg~~p~~~~~~~~-~~l~~~~~~~~~~~~~-~~-----~~~-~~~~~~~-~~~---~~~~~~~~~~~l~~~c~~ 638 (669)
++|||+||+.||....... ......+....+..+. .. .+. ....... ..+ .+......+.+++.+||.
T Consensus 213 ~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~ 292 (310)
T cd07865 213 IMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLV 292 (310)
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhc
Confidence 9999999999986522110 0111111111111100 00 000 0000000 000 000123456799999999
Q ss_pred CCCCCCCCHHHHHH
Q 040540 639 ESPDKRMHMTDAAA 652 (669)
Q Consensus 639 ~~P~~Rps~~~v~~ 652 (669)
.||++|||++|+++
T Consensus 293 ~~P~~R~t~~e~l~ 306 (310)
T cd07865 293 LDPAKRIDADTALN 306 (310)
T ss_pred CChhhccCHHHHhc
Confidence 99999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-21 Score=192.36 Aligned_cols=184 Identities=26% Similarity=0.356 Sum_probs=139.4
Q ss_pred hhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeee
Q 040540 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH 530 (669)
Q Consensus 451 ~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h 530 (669)
.|...+..++|+|++++++.+......+++|||+++++|.+++. ....+++..+..++.++++||++||+. +++|
T Consensus 47 ~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~L~~Lh~~----~i~H 121 (260)
T PF00069_consen 47 REIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYLQ-KNKPLSEEEILKIAYQILEALAYLHSK----GIVH 121 (260)
T ss_dssp HHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETTEBHHHHHH-HHSSBBHHHHHHHHHHHHHHHHHHHHT----TEEE
T ss_pred hhhhcccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc----cccc
Confidence 37888999999999999999988888899999999999999998 335589999999999999999999964 8999
Q ss_pred cCCCCcc-----------------c--------ccccccccccCcccccc-CCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 531 CEGEDSV-----------------T--------QTTTMATIGYMAPEYGS-EGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 531 ~d~~~~~-----------------~--------~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
+|+++.. . .....++..|+|||+.. ...++.++||||+|+++|||++|+.||..
T Consensus 122 ~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~ 201 (260)
T PF00069_consen 122 RDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEE 201 (260)
T ss_dssp SSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9998530 0 11224788999999988 77899999999999999999999999876
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.. .............. ..... ..........+.+++.+|++.||++||++.++++
T Consensus 202 ~~--~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~ 256 (260)
T PF00069_consen 202 SN--SDDQLEIIEKILKR--------PLPSS---SQQSREKSEELRDLIKKMLSKDPEQRPSAEELLK 256 (260)
T ss_dssp SS--HHHHHHHHHHHHHT--------HHHHH---TTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred cc--chhhhhhhhhcccc--------ccccc---ccccchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 41 11111111111000 00000 0001111267889999999999999999999875
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=190.38 Aligned_cols=198 Identities=20% Similarity=0.164 Sum_probs=139.0
Q ss_pred cCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|+..+..++|+|++++++.+... ...++||||++ ++|.+++......+++..+..++.++++|++|||..
T Consensus 44 ~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~--- 119 (287)
T cd07840 44 TAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMD-HDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSN--- 119 (287)
T ss_pred HHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEecccc-ccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 456788999999999999999999877 78899999998 589999876555789999999999999999999954
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhC
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......++..|+|||.+.+ ..++.++||||||+++|||+||
T Consensus 120 -~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~ 198 (287)
T cd07840 120 -GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLG 198 (287)
T ss_pred -CceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhC
Confidence 79999988430 0112245778999997765 4578999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhC----CCCcccccc--------ccccc-hhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 579 KRPTDEMFTGEMSLRRWVKESL----PHRLSEVVD--------TNLVR-EEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~----~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
+.||..... ......+.... +..+....+ +.... ...+......+...+.+++.+||..+|++||
T Consensus 199 ~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp 276 (287)
T cd07840 199 KPIFQGSTE--LEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRI 276 (287)
T ss_pred CCCCCCCCh--HHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCc
Confidence 999865321 11111111110 000000000 00000 0000000011256788999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
+++++++
T Consensus 277 ~~~~~l~ 283 (287)
T cd07840 277 SADQALQ 283 (287)
T ss_pred CHHHHhh
Confidence 9999875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-20 Score=192.90 Aligned_cols=184 Identities=20% Similarity=0.188 Sum_probs=132.9
Q ss_pred chhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 450 DSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 450 ~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
..|+..+.+. .|+|+++++++|......+++|||++ +++.++.......+++..+..++.++++|++|||. ..++
T Consensus 61 ~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---~~~i 136 (296)
T cd06618 61 LMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS-TCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKE---KHGV 136 (296)
T ss_pred HHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC-cCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---hCCE
Confidence 3455555555 49999999999999999999999986 57777776544578999999999999999999994 2479
Q ss_pred eecCCCCcc------------------------cccccccccccCccccccCCC----cCccccchhhHHHHHHHHhCCC
Q 040540 529 IHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGI----VSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 529 ~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|+++.. ......|+..|+|||.+.+.. ++.++||||||+++|||++|+.
T Consensus 137 ~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~ 216 (296)
T cd06618 137 IHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQF 216 (296)
T ss_pred ecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCC
Confidence 999988431 011123677899999986543 7889999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||.....+...+...+....+ . + +........+.+++.+||..||++||++.++++.
T Consensus 217 p~~~~~~~~~~~~~~~~~~~~-~--------~-------~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~ 273 (296)
T cd06618 217 PYKNCKTEFEVLTKILQEEPP-S--------L-------PPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH 273 (296)
T ss_pred CCCcchhHHHHHHHHhcCCCC-C--------C-------CCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 986522111111111111100 0 0 0011223457899999999999999999999764
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=189.96 Aligned_cols=194 Identities=19% Similarity=0.197 Sum_probs=136.6
Q ss_pred hhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 451 SECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 451 ~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
.|+..+.+++ |+|++++++.+......++||||+ +|++.+++.... ..+++..+..++.++++|+.|||+ .++
T Consensus 46 ~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~----~~i 120 (283)
T cd07830 46 REVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHK----HGF 120 (283)
T ss_pred HHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH----CCc
Confidence 4777888888 999999999999989999999999 789999987643 468999999999999999999995 479
Q ss_pred eecCCCCcc------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 529 IHCEGEDSV------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 529 ~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+|+|+++.. ......|+..|+|||++.+ ..++.++||||||++++||++|+.||.
T Consensus 121 ~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~ 200 (283)
T cd07830 121 FHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFP 200 (283)
T ss_pred ccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccC
Confidence 999988431 0112347888999998754 457899999999999999999999985
Q ss_pred cCCCCCccHH------------HHHHHh-CCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 584 EMFTGEMSLR------------RWVKES-LPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 584 ~~~~~~~~l~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
...... .+. .|.... ........+........ ..........+.+++.+||+.+|++||+++|+
T Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei 277 (283)
T cd07830 201 GSSEID-QLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSL--HQLIPNASPEAIDLIKDMLRWDPKKRPTASQA 277 (283)
T ss_pred CCChHH-HHHHHHHhcCCCChhhhhhHhhhhccccccccccccccH--HHHcccCCHHHHHHHHHhcccCcccCCCHHHH
Confidence 432110 010 011000 00000000000000000 00011124668899999999999999999998
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
+.
T Consensus 278 ~~ 279 (283)
T cd07830 278 LQ 279 (283)
T ss_pred hh
Confidence 75
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-20 Score=200.76 Aligned_cols=262 Identities=26% Similarity=0.331 Sum_probs=137.0
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
..|++++|.++ .+|..+. .+|+.|++++|+++ .+|. .+++|++|+|++|+++. +|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence 34555555554 3444443 24555555555554 2332 13455555555555552 3321 234555555555
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccch
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (669)
.+. .+|.. ..+|+.|++++|+++ .+|.. +++|+.|++++|++++. |.. ..+|+.|++++|.++ .+|.
T Consensus 273 ~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 273 PLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred chh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCC---cccccccccccCccc-cccc
Confidence 544 22322 134555666666665 23331 34566666666666642 321 124555666666665 3443
Q ss_pred hhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccc
Q 040540 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFL 317 (669)
Q Consensus 238 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 317 (669)
. ..+|++|+|++|++++ +|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|+++..+..
T Consensus 340 l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l------- 400 (788)
T PRK15387 340 L----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL------- 400 (788)
T ss_pred c----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc-------
Confidence 1 1356666666666653 3332 2345566666666653 4432 24566677777766654311
Q ss_pred cccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhh
Q 040540 318 SSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDL 396 (669)
Q Consensus 318 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~ 396 (669)
.++|+.|++++|.+.+ +|..+ ..|..|++++|.++ .+|..+..+..|+.+++++|.+++..+..+
T Consensus 401 -----~s~L~~LdLS~N~Lss-IP~l~-------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 -----PSELKELMVSGNRLTS-LPMLP-------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -----ccCCCEEEccCCcCCC-CCcch-------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 1356677777777664 33221 23455666666665 456666666777777777777776665554
|
|
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=186.91 Aligned_cols=184 Identities=20% Similarity=0.244 Sum_probs=142.4
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+..++++.|+|++++++.+... ...++++||+++++|.+++.+.. .+++..+..++.++++|++|||.
T Consensus 44 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~--- 119 (260)
T cd06606 44 EALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGLAYLHS--- 119 (260)
T ss_pred HHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---
Confidence 4567789999999999999999998877 78899999999999999998644 78999999999999999999995
Q ss_pred CCCeeecCCCCc-----------------------cc----ccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 525 SAPIIHCEGEDS-----------------------VT----QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 525 ~~~i~h~d~~~~-----------------------~~----~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+++. .. .....++..|+|||...+..++.++||||||++++||++
T Consensus 120 -~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~ 198 (260)
T cd06606 120 -NGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMAT 198 (260)
T ss_pred -CCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHh
Confidence 47999998732 00 122347889999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|+.||.... . .............. +. .+......+.+++.+|++.+|++||++.|+++
T Consensus 199 g~~p~~~~~-~--~~~~~~~~~~~~~~-----~~---------~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~ 256 (260)
T cd06606 199 GKPPWSELG-N--PMAALYKIGSSGEP-----PE---------IPEHLSEEAKDFLRKCLRRDPKKRPTADELLQ 256 (260)
T ss_pred CCCCCCCCC-c--hHHHHHhccccCCC-----cC---------CCcccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence 999987632 1 11111000000000 00 12233456889999999999999999999975
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=190.67 Aligned_cols=198 Identities=17% Similarity=0.164 Sum_probs=135.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..++.++|+|++++++++......++||||++ +++.+++.... ...++.....++.+++.|++|||. .
T Consensus 47 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~----~ 121 (294)
T PLN00009 47 TAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHS----H 121 (294)
T ss_pred HHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHh----C
Confidence 45678999999999999999999998899999999996 58888876432 235677777899999999999994 4
Q ss_pred CeeecCCCCccc--------------------------ccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++... .....|++.|+|||++.+ ..++.++|||||||++|||+||+
T Consensus 122 ~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~ 201 (294)
T PLN00009 122 RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQK 201 (294)
T ss_pred CeeCCCCCcceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 799999885410 011235778999998766 45789999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHH-hCC--CCccccc---c-----ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 580 RPTDEMFTGEMSLRRWVKE-SLP--HRLSEVV---D-----TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~-~~~--~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
.||..... ...+...... ..+ ..+.... + +..... ............+.+++.+|++.+|++||++.
T Consensus 202 ~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~ 279 (294)
T PLN00009 202 PLFPGDSE-IDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPK-DLATVVPTLEPAGVDLLSKMLRLDPSKRITAR 279 (294)
T ss_pred CCCCCCCH-HHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCC-CHHHhCcCCChHHHHHHHHHccCChhhCcCHH
Confidence 99865221 1111111100 000 0000000 0 000000 00000112345678999999999999999999
Q ss_pred HHHH
Q 040540 649 DAAA 652 (669)
Q Consensus 649 ~v~~ 652 (669)
++++
T Consensus 280 ~~l~ 283 (294)
T PLN00009 280 AALE 283 (294)
T ss_pred HHhc
Confidence 9986
|
|
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-20 Score=186.32 Aligned_cols=182 Identities=20% Similarity=0.274 Sum_probs=142.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|++.++.++|+|++++.+.+......++++||+++++|.+++.+. +..+++.....++.++++|+.|||.
T Consensus 45 ~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~--- 121 (258)
T cd08215 45 DALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS--- 121 (258)
T ss_pred HHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHh---
Confidence 4567888999999999999999988888889999999999999999764 3678999999999999999999994
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+++|+|+++.. ......|++.|+|||...+..++.++||||+|++++||++|+
T Consensus 122 -~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~ 200 (258)
T cd08215 122 -RKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLK 200 (258)
T ss_pred -CCEecccCChHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCC
Confidence 389999988431 011234788899999988888999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ..+........... .+ +......+.+++.+||..+|++||++.|+++
T Consensus 201 ~p~~~~~-----~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~ 254 (258)
T cd08215 201 HPFEGEN-----LLELALKILKGQYP-----PI---------PSQYSSELRNLVSSLLQKDPEERPSIAQILQ 254 (258)
T ss_pred CCCCCCc-----HHHHHHHHhcCCCC-----CC---------CCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 9986532 11111111111100 00 1122345789999999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-20 Score=200.40 Aligned_cols=185 Identities=17% Similarity=0.181 Sum_probs=144.2
Q ss_pred ccCchhhhhhccc-cccccceecccccc-----ccccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhh
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSN-----PDFKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
.+...|.+++... .|||++.++|++.. ++..|+|||||.+|+..++++. .+..+.|....-|.+++++|+.+|
T Consensus 60 eEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HL 139 (953)
T KOG0587|consen 60 EEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHL 139 (953)
T ss_pred HHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 3444556666554 69999999998854 6788999999999999999986 345688888888999999999999
Q ss_pred hcCCCCCCeeecCCCCc-------------------------ccccccccccccCccccccC-----CCcCccccchhhH
Q 040540 520 RHGHSSAPIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSE-----GIVSAKCDVYSYG 569 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~G 569 (669)
|. ..++|||+|.. ....+.+||+.|||||++.. ..|+.++|+||+|
T Consensus 140 H~----nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLG 215 (953)
T KOG0587|consen 140 HN----NKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLG 215 (953)
T ss_pred hh----cceeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhcc
Confidence 94 47999999943 12345579999999999854 3488899999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|+..||.-|.+|+.++.+.. .+-+.....++....+.....++.++|..|+.+|-.+||++.+
T Consensus 216 ITaIEladG~PPl~DmHPmr-----------------aLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ 278 (953)
T KOG0587|consen 216 ITAIEMAEGAPPLCDMHPMR-----------------ALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEE 278 (953)
T ss_pred ceeehhcCCCCCccCcchhh-----------------hhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhh
Confidence 99999999999998765321 0111122222223346778889999999999999999999988
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
.++
T Consensus 279 ll~ 281 (953)
T KOG0587|consen 279 LLK 281 (953)
T ss_pred hcc
Confidence 765
|
|
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-20 Score=193.27 Aligned_cols=197 Identities=19% Similarity=0.187 Sum_probs=136.5
Q ss_pred cCchhhhhhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+.++..++|+|++++++.+.. ....++||||+. |+|.+++... ..+++.....++.++++|+.|||.
T Consensus 50 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~-- 125 (334)
T cd07855 50 RTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDLHHIIHSD-QPLTEEHIRYFLYQLLRGLKYIHS-- 125 (334)
T ss_pred HHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEehhh-hhHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 44568899999999999999887753 345689999996 6899998753 458999999999999999999995
Q ss_pred CCCCeeecCCCCcc--------------------c---------ccccccccccCccccccC-CCcCccccchhhHHHHH
Q 040540 524 SSAPIIHCEGEDSV--------------------T---------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLM 573 (669)
Q Consensus 524 ~~~~i~h~d~~~~~--------------------~---------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~ 573 (669)
.+++|+|+++.. . .....|+..|+|||++.. ..++.++|||||||++|
T Consensus 126 --~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~ 203 (334)
T cd07855 126 --ANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFA 203 (334)
T ss_pred --CCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHH
Confidence 479999998430 0 012257889999998765 45889999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCC----cccccccccc-------c-hhhh-hhhhHHHHHHHHHHHhhcccCC
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHR----LSEVVDTNLV-------R-EEQA-FSAKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~-------~-~~~~-~~~~~~~~~~~~~l~~~c~~~~ 640 (669)
||++|+.||..... ......+....... ........+. . .... .....+.+..+.+++.+|++.+
T Consensus 204 el~~g~~pf~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~ 281 (334)
T cd07855 204 EMLGRRQLFPGKNY--VHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFD 281 (334)
T ss_pred HHHcCCCccCCCCh--HHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCC
Confidence 99999999965321 11111111111000 0000000000 0 0000 0001234567899999999999
Q ss_pred CCCCCCHHHHHH
Q 040540 641 PDKRMHMTDAAA 652 (669)
Q Consensus 641 P~~Rps~~~v~~ 652 (669)
|++||++++++.
T Consensus 282 P~~Rpt~~~~l~ 293 (334)
T cd07855 282 PEERITVEQALQ 293 (334)
T ss_pred hhhCcCHHHHHh
Confidence 999999999876
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-20 Score=190.25 Aligned_cols=197 Identities=20% Similarity=0.160 Sum_probs=135.9
Q ss_pred Cchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+..|+.++.+++|+|++++++.+... +..++||||+. ++|.+++......+++.+...++.++++|++|||..
T Consensus 53 ~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---- 127 (309)
T cd07845 53 SLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCE-QDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHEN---- 127 (309)
T ss_pred hhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 44688999999999999999987654 45789999997 589988876556789999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+++.. ......++..|+|||.+.+ ..++.++||||+||++|||++|+.
T Consensus 128 ~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~ 207 (309)
T cd07845 128 FIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKP 207 (309)
T ss_pred CeecCCCCHHHEEECCCCCEEECccceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCC
Confidence 79999988430 0111235678999998865 457899999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccc----cc------cccchhh--hhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVV----DT------NLVREEQ--AFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~------~~~~~~~--~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
||..... .....-+............ +. .+..... ...........+.+++.+|++.||++|||+.
T Consensus 208 ~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~ 285 (309)
T cd07845 208 LLPGKSE--IEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAE 285 (309)
T ss_pred CCCCCCH--HHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHH
Confidence 9875321 1111111111110000000 00 0000000 0000011345678999999999999999999
Q ss_pred HHHH
Q 040540 649 DAAA 652 (669)
Q Consensus 649 ~v~~ 652 (669)
|+++
T Consensus 286 ~il~ 289 (309)
T cd07845 286 EALE 289 (309)
T ss_pred HHhc
Confidence 9975
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-20 Score=187.71 Aligned_cols=196 Identities=19% Similarity=0.208 Sum_probs=135.4
Q ss_pred Cchhhhhhccc---cccccceeccccccccc-----cceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhh
Q 040540 449 FDSECEVLRNV---RHRNLIKIISSCSNPDF-----KALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 449 ~~~e~~~l~~l---~h~niv~l~~~~~~~~~-----~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+..|+..+..+ .|+|++++++.+..... .+++|||++ +++.+++.... ..+++.....++.++++|+.||
T Consensus 45 ~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~L 123 (287)
T cd07838 45 TLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFL 123 (287)
T ss_pred HHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33465555444 69999999999887665 889999998 58999887532 3589999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
|. .+++|+|+++.. ......++..|+|||+..+..++.++|||||||++|||
T Consensus 124 H~----~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l 199 (287)
T cd07838 124 HS----HRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAEL 199 (287)
T ss_pred HH----CCeeeccCChhhEEEccCCCEEEeccCcceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHH
Confidence 95 479999988431 01122367889999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCC-CC--cc-------ccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLP-HR--LS-------EVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~-~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
++|+.||..... ...+......... .. .. .......... . .....+....+.+++.+||+.||++||
T Consensus 200 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~li~~~l~~dp~~Rp 276 (287)
T cd07838 200 FRRRPLFRGTSE-ADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRS-F-KSFVPEICEEGLDLLKKMLTFNPHKRI 276 (287)
T ss_pred HhCCCcccCCCh-HHHHHHHHHHcCCCChHhcCCCcccchhhcccccccc-h-hhhhhhhhHHHHHHHHHHhccCCccCC
Confidence 999988865321 1112222211100 00 00 0000000000 0 001123456778999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
++.|+++
T Consensus 277 ~~~~il~ 283 (287)
T cd07838 277 SAFEALQ 283 (287)
T ss_pred CHHHHhc
Confidence 9999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=201.74 Aligned_cols=270 Identities=21% Similarity=0.320 Sum_probs=139.2
Q ss_pred ChhhHHHHHHHHhhcCCCcc--cccCCCCCCCCCCCccc----------------eeeCCCCCCEEEEEcCCCCCcccc-
Q 040540 7 LTTDQSSLLAFKAHAFDYRS--ALANNWSISYPICSWAG----------------ISCGSRHQRVTALNLSDMGLGGTI- 67 (669)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~--~l~~~w~~~~~~c~~~g----------------~~c~~~~~~v~~L~ls~~~l~~~~- 67 (669)
.+.+.+.+++..+.+..|.. .....|+...++|.-.. |.|.. +.|+.+...+.......
T Consensus 61 ~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~~~~~ 138 (754)
T PRK15370 61 SPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQASSAS 138 (754)
T ss_pred CHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--CcccccccccccccccCC
Confidence 34567788888887855543 33445888888996543 44543 44555555432111000
Q ss_pred -------------------cc--------cc-----cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccC
Q 040540 68 -------------------PL--------HF-----GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115 (669)
Q Consensus 68 -------------------~~--------~~-----~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 115 (669)
+. .+ .-..+.+.|+++++.++ .+|..+. +.|+.|+|++|+++ .+
T Consensus 139 ~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sL 214 (754)
T PRK15370 139 GSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SL 214 (754)
T ss_pred CCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cC
Confidence 00 00 01123456666666665 3444443 35666666666666 34
Q ss_pred CccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCC
Q 040540 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQ 195 (669)
Q Consensus 116 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~ 195 (669)
|..+. .+|++|++++|+|+ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. +
T Consensus 215 P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~ 283 (754)
T PRK15370 215 PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--E 283 (754)
T ss_pred Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--C
Confidence 44332 36666666666665 3444433 24666666666655 4454443 35666666666665 3444332 3
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeC
Q 040540 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDL 275 (669)
Q Consensus 196 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 275 (669)
+|+.|++++|++++ +|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.+++ +|..+. ++|+.|++
T Consensus 284 sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~L 353 (754)
T PRK15370 284 ELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS-LPASLP--PELQVLDV 353 (754)
T ss_pred CCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-CChhhc--CcccEEEC
Confidence 56666666666654 233222 24555666666555 3443322 355555666665543 343332 45555666
Q ss_pred CCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 276 GFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 276 s~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
++|.+. .+|..+. ++|+.|++++|+++.
T Consensus 354 s~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 354 SKNQIT-VLPETLP--PTITTLDVSRNALTN 381 (754)
T ss_pred CCCCCC-cCChhhc--CCcCEEECCCCcCCC
Confidence 655554 2333331 345555555555544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=198.51 Aligned_cols=265 Identities=26% Similarity=0.282 Sum_probs=200.5
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
-..|+++.++++ .+|+.+. ++|+.|++++|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|+|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 457999999998 6777665 489999999999984 564 2578999999999998 45643 46889999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
|.++ .+|..+ .+|+.|++++|.+. .+|.. +++|+.|++++|++++ +|... .+|+.|++++|.+++ +|
T Consensus 272 N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccc-cc
Confidence 9987 455433 56888999999987 45543 4689999999999985 45422 467889999999985 45
Q ss_pred ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCC
Q 040540 213 PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 292 (669)
.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|++.+ +|.. ..+|+.|++++|.+.+ +|.. .+
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s 402 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PS 402 (788)
T ss_pred cc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---cc
Confidence 32 257899999999998 46642 3578889999999874 5543 3578999999999885 5543 35
Q ss_pred CCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccc
Q 040540 293 HLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372 (669)
Q Consensus 293 ~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 372 (669)
+|+.|++++|+++..+.. ..+|+.|++++|.++ .+|..+.. +..+..+++++|.+++..+..+
T Consensus 403 ~L~~LdLS~N~LssIP~l------------~~~L~~L~Ls~NqLt-~LP~sl~~----L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTSLPML------------PSGLLSLSVYRNQLT-RLPESLIH----LSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCCCCcc------------hhhhhhhhhccCccc-ccChHHhh----ccCCCeEECCCCCCCchHHHHH
Confidence 788999999998765421 235778899999987 45655543 6678899999999998776665
Q ss_pred cc
Q 040540 373 GT 374 (669)
Q Consensus 373 ~~ 374 (669)
..
T Consensus 466 ~~ 467 (788)
T PRK15387 466 RE 467 (788)
T ss_pred HH
Confidence 33
|
|
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-20 Score=193.13 Aligned_cols=197 Identities=20% Similarity=0.195 Sum_probs=134.5
Q ss_pred cCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+..+..++|+|++++++.+... ...++++||++ +++.+.+.. ..+++.....++.++++|++|||.
T Consensus 49 ~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~--~~l~~~~~~~i~~ql~~aL~~LH~- 124 (336)
T cd07849 49 RTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQELME-TDLYKLIKT--QHLSNDHIQYFLYQILRGLKYIHS- 124 (336)
T ss_pred HHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehhcc-cCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 355688999999999999999876543 34689999997 588888864 458888999999999999999995
Q ss_pred CCCCCeeecCCCCcc----------------------------cccccccccccCccccccC-CCcCccccchhhHHHHH
Q 040540 523 HSSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLM 573 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~ 573 (669)
.+++|+|+++.. ......||..|+|||.+.+ ..++.++|||||||++|
T Consensus 125 ---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~ 201 (336)
T cd07849 125 ---ANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILA 201 (336)
T ss_pred ---CCeeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHH
Confidence 479999988430 0011247888999998654 45889999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCC----CCccccccccccc------hhhhhh---hhHHHHHHHHHHHhhcccCC
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLP----HRLSEVVDTNLVR------EEQAFS---AKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~l~~~c~~~~ 640 (669)
||++|+.||.... ......++..... +....+.+..... .....+ ........+.+++.+||+.+
T Consensus 202 el~~G~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d 279 (336)
T cd07849 202 EMLSNRPLFPGKD--YLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFN 279 (336)
T ss_pred HHHhCCCCCCCCC--HHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCC
Confidence 9999999986421 1111111111111 0000000000000 000000 01123456889999999999
Q ss_pred CCCCCCHHHHHHH
Q 040540 641 PDKRMHMTDAAAK 653 (669)
Q Consensus 641 P~~Rps~~~v~~~ 653 (669)
|++|||+.|+++.
T Consensus 280 P~~Rpt~~e~l~h 292 (336)
T cd07849 280 PHKRITVEEALAH 292 (336)
T ss_pred hhhCcCHHHHhcC
Confidence 9999999999874
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=188.61 Aligned_cols=189 Identities=22% Similarity=0.192 Sum_probs=140.5
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.++..+ +|++++++++.+......++||||+++|+|.+++... ..+++.....++.++++|+.|||. .
T Consensus 50 ~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~----~ 124 (288)
T cd05583 50 HTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQR-EHFTESEVRVYIAEIVLALDHLHQ----L 124 (288)
T ss_pred HHHHHHHHHHhccCCcchhhhheeeecCCEEEEEEecCCCCcHHHHHhhc-CCcCHHHHHHHHHHHHHHHHHHHH----C
Confidence 455788888888 5999999999888888889999999999999999753 457888888999999999999994 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCC--cCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGI--VSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......|+..|+|||...+.. ++.++||||||+++|||+||
T Consensus 125 ~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg 204 (288)
T cd05583 125 GIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTG 204 (288)
T ss_pred CeeccCCCHHHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhC
Confidence 79999988421 001124788999999887654 78899999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
+.||..... ........+...... + +.+......+.+++.+||+.+|++|||+++|.+.|+..
T Consensus 205 ~~p~~~~~~-~~~~~~~~~~~~~~~------~---------~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~ 267 (288)
T cd05583 205 ASPFTVDGE-QNSQSEISRRILKSK------P---------PFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHP 267 (288)
T ss_pred CCCcccCcc-cchHHHHHHHHHccC------C---------CCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence 999854211 111111111111000 0 01112334578999999999999999999888776653
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-20 Score=191.96 Aligned_cols=196 Identities=21% Similarity=0.211 Sum_probs=135.9
Q ss_pred cCchhhhhhccc-cccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|+..+..+ +|+|+++++++|... ...++||||++ ++|.+++... .+++..+..++.+++.|++|||.
T Consensus 52 ~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~--- 125 (337)
T cd07852 52 RTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYME-TDLHAVIRAN--ILEDVHKRYIMYQLLKALKYIHS--- 125 (337)
T ss_pred hhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEecccc-cCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---
Confidence 455688999999 999999999987653 35789999998 5999998753 68899999999999999999995
Q ss_pred CCCeeecCCCCcc------------------------------cccccccccccCccccccC-CCcCccccchhhHHHHH
Q 040540 525 SAPIIHCEGEDSV------------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLM 573 (669)
Q Consensus 525 ~~~i~h~d~~~~~------------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~ 573 (669)
.+++|+|+++.. ......||..|+|||.+.+ ..++.++|||||||++|
T Consensus 126 -~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~ 204 (337)
T cd07852 126 -GNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILG 204 (337)
T ss_pred -CCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHH
Confidence 489999988430 0011247888999998755 45788999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCC------------ccccccccccchh-hh-hhhhHHHHHHHHHHHhhcccC
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHR------------LSEVVDTNLVREE-QA-FSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~c~~~ 639 (669)
||+||+.||...... .....+....... ....++ .+.... .. ..........+.+++.+||+.
T Consensus 205 el~tg~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~ 281 (337)
T cd07852 205 EMLLGKPLFPGTSTL--NQLEKIIEVIGPPSAEDIESIKSPFAATMLD-SLPSRPRKPLDELLPKASDDALDLLKKLLVF 281 (337)
T ss_pred HHHhCCCCCCCCChH--HHHHHHHHHhCCCCHHHHHHHHhhhHHHhhh-hcccccccchhhhccCCCHHHHHHHHHhccC
Confidence 999999998642211 1111111100000 000000 000000 00 000112355688999999999
Q ss_pred CCCCCCCHHHHHHH
Q 040540 640 SPDKRMHMTDAAAK 653 (669)
Q Consensus 640 ~P~~Rps~~~v~~~ 653 (669)
+|++|||+.++++.
T Consensus 282 ~P~~Rps~~~il~~ 295 (337)
T cd07852 282 NPNKRLTAEEALEH 295 (337)
T ss_pred CcccccCHHHHhhC
Confidence 99999999999873
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=184.21 Aligned_cols=182 Identities=21% Similarity=0.285 Sum_probs=141.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|++.+..++|++++++++++......+++|||+++++|.+++... ..+++..+..++.+++.|+.|+|. .
T Consensus 44 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~~l~~lH~----~ 118 (254)
T cd06627 44 KSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKF-GPFPESLVAVYVYQVLQGLAYLHE----Q 118 (254)
T ss_pred HHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhh----C
Confidence 35677899999999999999999988888899999999999999999754 568999999999999999999994 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......|+..|+|||...+..++.++||||+|+++|||++|+.|
T Consensus 119 ~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p 198 (254)
T cd06627 119 GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPP 198 (254)
T ss_pred CcccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCC
Confidence 79999988431 00122478889999998877789999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.... ......+.. .... ..+ +......+.+++.+|+..+|++||++.|++.
T Consensus 199 ~~~~~----~~~~~~~~~-~~~~-~~~-------------~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~ 250 (254)
T cd06627 199 YYDLN----PMAALFRIV-QDDH-PPL-------------PEGISPELKDFLMQCFQKDPNLRPTAKQLLK 250 (254)
T ss_pred CCCcc----HHHHHHHHh-ccCC-CCC-------------CCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence 86532 111111111 0000 001 1122345679999999999999999999874
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=190.21 Aligned_cols=198 Identities=17% Similarity=0.135 Sum_probs=134.2
Q ss_pred cCchhhhhhcccc-ccccceeccccccccc-----cceeeccCCCCChHHhhhcC----CCccCHHHHHHHHHhHHhhhh
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDF-----KALVLEFMPNGSLEKWLYSH----NYFLDILERLNIMIDVGSALE 517 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~-----~~lv~ey~~~g~L~~~l~~~----~~~l~~~~~~~i~~~i~~~l~ 517 (669)
.+..|+.++..++ |+|++++++.+..... .+++|||+++ ++.+++... ...+++.....++.|+++||.
T Consensus 46 ~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~ 124 (295)
T cd07837 46 TALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVA 124 (295)
T ss_pred HHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567888898885 6999999988876554 7899999985 898888642 235789999999999999999
Q ss_pred hhhcCCCCCCeeecCCCCccc--------------------------ccccccccccCccccccC-CCcCccccchhhHH
Q 040540 518 YLRHGHSSAPIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGV 570 (669)
Q Consensus 518 ~lh~~~~~~~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv 570 (669)
|||. .+++|+|+++... .....+++.|+|||++.+ ..++.++|||||||
T Consensus 125 ~LH~----~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~ 200 (295)
T cd07837 125 HCHK----HGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGC 200 (295)
T ss_pred HHHH----CCeeecCCChHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHH
Confidence 9994 4799999884310 011135678999998765 45789999999999
Q ss_pred HHHHHHhCCCCCCcCCCCCccHHHHHHHh-CCCC--cccccc-------ccccchhhhhhhhHHHHHHHHHHHhhcccCC
Q 040540 571 LLMETFTRKRPTDEMFTGEMSLRRWVKES-LPHR--LSEVVD-------TNLVREEQAFSAKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 571 il~el~tg~~p~~~~~~~~~~l~~~~~~~-~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~ 640 (669)
++|||++|+.||..... ...+....... .+.. ...... +..... ............+.+++.+|+..|
T Consensus 201 ~l~~l~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~ 278 (295)
T cd07837 201 IFAEMSRKQPLFPGDSE-LQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQ-DLSRAVPDLSPEGLDLLQKMLRYD 278 (295)
T ss_pred HHHHHHcCCCCCCCCCH-HHHHHHHHHHhCCCChhhCcchhhccchhhcCcccch-hHHHhccccCHHHHHHHHHHccCC
Confidence 99999999999865211 11111111100 0000 000000 000000 000001234566889999999999
Q ss_pred CCCCCCHHHHHH
Q 040540 641 PDKRMHMTDAAA 652 (669)
Q Consensus 641 P~~Rps~~~v~~ 652 (669)
|++||++.|+++
T Consensus 279 P~~R~~~~eil~ 290 (295)
T cd07837 279 PAKRISAKAALT 290 (295)
T ss_pred hhhcCCHHHHhc
Confidence 999999999875
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-20 Score=187.86 Aligned_cols=199 Identities=21% Similarity=0.177 Sum_probs=135.7
Q ss_pred cCchhhhhhccccccccceecccccccc----------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPD----------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALE 517 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~----------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~ 517 (669)
.+..|+.+++.++|||++++++.+.... ..++++||+++ ++.+.+......+++.....++.+++.|++
T Consensus 52 ~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~ 130 (302)
T cd07864 52 TAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLN 130 (302)
T ss_pred HHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456888999999999999999886544 67899999985 787777765556899999999999999999
Q ss_pred hhhcCCCCCCeeecCCCCccc--------------------------ccccccccccCccccccC-CCcCccccchhhHH
Q 040540 518 YLRHGHSSAPIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGV 570 (669)
Q Consensus 518 ~lh~~~~~~~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv 570 (669)
|||+ .+++|+|+++... .....++..|+|||.+.+ ..++.++|||||||
T Consensus 131 ~LH~----~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~ 206 (302)
T cd07864 131 YCHK----KNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGC 206 (302)
T ss_pred HHHh----CCeecCCCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHH
Confidence 9995 4799999884310 011235678999998765 45788999999999
Q ss_pred HHHHHHhCCCCCCcCCCCCccHHHHHHH---hCCCCcccccccc--------ccchhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 571 LLMETFTRKRPTDEMFTGEMSLRRWVKE---SLPHRLSEVVDTN--------LVREEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 571 il~el~tg~~p~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
++|||++|+.||.... ....+...... ..+.......... ..............+..+.+++.+||+.
T Consensus 207 ~~~el~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~ 285 (302)
T cd07864 207 ILGELFTKKPIFQANQ-ELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTL 285 (302)
T ss_pred HHHHHHhCCCCCCCCC-hHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccC
Confidence 9999999999986421 11111111111 1011011000000 0000000000112345788999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
+|++||++.+++.
T Consensus 286 ~P~~Rp~~~~il~ 298 (302)
T cd07864 286 DPSKRCTAEEALN 298 (302)
T ss_pred ChhhCCCHHHHhc
Confidence 9999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-20 Score=191.64 Aligned_cols=206 Identities=22% Similarity=0.208 Sum_probs=144.3
Q ss_pred ccCchhhhhhccccccccceecccccccc-----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD-----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+..|+..+..++|+|++++++.+.... ..+++|||++ ++|.+++.+. ..+++.....++.++++|++|||.
T Consensus 44 ~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~-~~l~~~~~~~i~~~l~~~l~~LH~ 121 (330)
T cd07834 44 KRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELME-TDLHKVIKSP-QPLTDDHIQYFLYQILRGLKYLHS 121 (330)
T ss_pred hhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEecchh-hhHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45667899999999999999999987764 6789999998 5899998754 378999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc----------------------------cccccccccccCccccccCC-CcCccccchhhHHHH
Q 040540 522 GHSSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLL 572 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil 572 (669)
.+++|+|+++.. ......++..|+|||++.+. .++.++||||||+++
T Consensus 122 ----~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il 197 (330)
T cd07834 122 ----ANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIF 197 (330)
T ss_pred ----CCeecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHH
Confidence 479999988430 01122478889999999877 789999999999999
Q ss_pred HHHHhCCCCCCcCCCCCccHHHHHHHhCCCC----c--------cccccccc-cchhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 573 METFTRKRPTDEMFTGEMSLRRWVKESLPHR----L--------SEVVDTNL-VREEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~----~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
|||++|+.||..... ......+....... . .+.+.... ................+.+++.+||+.
T Consensus 198 ~~l~~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~ 275 (330)
T cd07834 198 AELLTRKPLFPGRDY--IDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVF 275 (330)
T ss_pred HHHHcCCCCcCCCCH--HHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccC
Confidence 999999999865321 11111111110000 0 00000000 000000000112356788999999999
Q ss_pred CCCCCCCHHHHHHH--HHHhHHH
Q 040540 640 SPDKRMHMTDAAAK--LKKIKVK 660 (669)
Q Consensus 640 ~P~~Rps~~~v~~~--l~~~~~~ 660 (669)
+|++||++.++++. +++++..
T Consensus 276 ~P~~Rpt~~~ll~~~~~~~~~~~ 298 (330)
T cd07834 276 DPKKRITADEALAHPYLAQLHDP 298 (330)
T ss_pred ChhhCCCHHHHHhCccHHhhccc
Confidence 99999999999873 6655543
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-20 Score=200.62 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=134.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC----CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+.++..++|+|++++++++...+..++++|++. +++.+++.... ......+...|+.|++.||+|||.
T Consensus 209 ~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~-- 285 (501)
T PHA03210 209 QLENEILALGRLNHENILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD-- 285 (501)
T ss_pred HHHHHHHHHHhCCCCCcCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh--
Confidence 46679999999999999999999998888999999985 68888875421 112244566899999999999994
Q ss_pred CCCCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 524 SSAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 524 ~~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+|+|||+|+.. ......||..|+|||++.+..++.++|||||||++|||++
T Consensus 286 --~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~ 363 (501)
T PHA03210 286 --KKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLS 363 (501)
T ss_pred --CCeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 479999999430 0112358999999999998889999999999999999999
Q ss_pred CCCC-CCcCCCCC-ccHHHHHHH------hCCCCcc---cccccc-ccc---hhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 578 RKRP-TDEMFTGE-MSLRRWVKE------SLPHRLS---EVVDTN-LVR---EEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 578 g~~p-~~~~~~~~-~~l~~~~~~------~~~~~~~---~~~~~~-~~~---~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|+.+ +....... ..+...+.. .++.... +.++.. +.. ..+..-.......++.+++.+|++.||.
T Consensus 364 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~ 443 (501)
T PHA03210 364 HDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWH 443 (501)
T ss_pred CCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcc
Confidence 9854 43221111 112111111 1111000 000000 000 0000000111234567889999999999
Q ss_pred CCCCHHHHHH
Q 040540 643 KRMHMTDAAA 652 (669)
Q Consensus 643 ~Rps~~~v~~ 652 (669)
+|||+.|+++
T Consensus 444 ~Rpsa~elL~ 453 (501)
T PHA03210 444 LRPGAAELLA 453 (501)
T ss_pred cCcCHHHHhh
Confidence 9999999986
|
|
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-20 Score=186.03 Aligned_cols=197 Identities=20% Similarity=0.158 Sum_probs=139.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++.+......++||||++ ++|.+++.+....+++..+..++.++++|+.|||.. +
T Consensus 44 ~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~----~ 118 (282)
T cd07829 44 TALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD-MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSH----R 118 (282)
T ss_pred HHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC-cCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 44568889999999999999999998889999999998 599999986545689999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......++..|+|||...+. .++.++|||||||++||+++|+.|
T Consensus 119 i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~ 198 (282)
T cd07829 119 ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPL 198 (282)
T ss_pred cccCCCChheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCC
Confidence 9999988431 00112346779999988766 788999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCC----CCc--------cccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLP----HRL--------SEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|..... ......+..... ..+ .+..-+........ .........+.+++.+||..+|++||++.+
T Consensus 199 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ 275 (282)
T cd07829 199 FPGDSE--IDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLE-KVLPRLDPEGIDLLSKMLQYNPAKRISAKE 275 (282)
T ss_pred CCCccH--HHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchH-HhcccccHHHHHHHHHhhccCcccCCCHHH
Confidence 865221 111111100000 000 00000000000000 001122456899999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
++.
T Consensus 276 ~l~ 278 (282)
T cd07829 276 ALK 278 (282)
T ss_pred Hhh
Confidence 875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-20 Score=189.43 Aligned_cols=200 Identities=15% Similarity=0.125 Sum_probs=135.6
Q ss_pred cCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcC----CCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSH----NYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~----~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+.++..++|||++++++++... ...++||||++ +++.+++... ...++......|+.|+++|+.|||.
T Consensus 48 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~ 126 (316)
T cd07842 48 SACREIALLRELKHENVVSLVEVFLEHADKSVYLLFDYAE-HDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS 126 (316)
T ss_pred HHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEeCCC-cCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHh
Confidence 345688899999999999999999877 77899999997 4777776532 2357888888999999999999994
Q ss_pred CCCCCCeeecCCCCccc--------------------------------ccccccccccCccccccC-CCcCccccchhh
Q 040540 522 GHSSAPIIHCEGEDSVT--------------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSY 568 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~~--------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~ 568 (669)
.+++|+|+++... .....++..|+|||+..+ ..++.++|||||
T Consensus 127 ----~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~sl 202 (316)
T cd07842 127 ----NWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAI 202 (316)
T ss_pred ----CCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHH
Confidence 4799999883210 001135778999998766 458899999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCC--------ccHHHHHHHhCCC------------Cccc---ccc-cccc--chhhhhhhh
Q 040540 569 GVLLMETFTRKRPTDEMFTGE--------MSLRRWVKESLPH------------RLSE---VVD-TNLV--REEQAFSAK 622 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~--------~~l~~~~~~~~~~------------~~~~---~~~-~~~~--~~~~~~~~~ 622 (669)
||+++||++|+.||....... ..+...+...-+. .... ... .... ......+..
T Consensus 203 G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (316)
T cd07842 203 GCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKH 282 (316)
T ss_pred HHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhc
Confidence 999999999999997533221 0111111110000 0000 000 0000 000000001
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 623 MDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 623 ~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
......+.+++.+|++.||++|||+.|+++
T Consensus 283 ~~~~~~~~~~i~~~l~~~P~~Rps~~eil~ 312 (316)
T cd07842 283 KKPDSQGFDLLRKLLEYDPTKRITAEEALE 312 (316)
T ss_pred cCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 134456889999999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-20 Score=190.84 Aligned_cols=177 Identities=21% Similarity=0.221 Sum_probs=134.9
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
-..|+.+.... .|+|+++..+.+......++|||++.+|.+.+.+..... ...++..|+.+++.|+.|||. .+
T Consensus 362 ~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri~~~~~--~~~e~~~w~~~lv~Av~~LH~----~g 435 (612)
T KOG0603|consen 362 NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRIRSKPE--FCSEASQWAAELVSAVDYLHE----QG 435 (612)
T ss_pred cccccchhhhhcCCCcceeecceecCCceeeeeehhccccHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHHh----cC
Confidence 33455444444 799999999999999999999999999999888875333 226777899999999999994 58
Q ss_pred eeecCCCCccccc-----------------------ccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 528 IIHCEGEDSVTQT-----------------------TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 528 i~h~d~~~~~~~~-----------------------~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
++|||+|+..... +.+-|..|.|||+.....|++++||||+||+||||++|+.||..
T Consensus 436 vvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~ 515 (612)
T KOG0603|consen 436 VVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAA 515 (612)
T ss_pred eeecCCChhheeecCCCCcEEEEEechhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCcccc
Confidence 9999999652111 11346789999999988899999999999999999999999976
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
-..+ ..+...+. .. +.....+..+++++.+|++.||.+||+|.++..
T Consensus 516 ~P~~-~ei~~~i~---~~-----------------~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~ 562 (612)
T KOG0603|consen 516 HPAG-IEIHTRIQ---MP-----------------KFSECVSDEAKDLLQQLLQVDPALRLGADEIGA 562 (612)
T ss_pred CCch-HHHHHhhc---CC-----------------ccccccCHHHHHHHHHhccCChhhCcChhhhcc
Confidence 3322 11111111 00 012345567899999999999999999999854
|
|
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-20 Score=190.76 Aligned_cols=195 Identities=20% Similarity=0.163 Sum_probs=134.6
Q ss_pred cCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+..+..++|+|++++++++... ...++||||++ ++|.+.+... ++......++.|+++|++|||.
T Consensus 61 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~---l~~~~~~~~~~ql~~aL~~LH~ 136 (353)
T cd07850 61 RAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIQMD---LDHERMSYLLYQMLCGIKHLHS 136 (353)
T ss_pred HHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEEeccC-CCHHHHHhhc---CCHHHHHHHHHHHHHHHHHHHh
Confidence 344688899999999999999887543 24589999997 5888888642 7888888999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+|+.. ......|+..|+|||.+.+..++.++|||||||++|||++
T Consensus 137 ----~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~ 212 (353)
T cd07850 137 ----AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIR 212 (353)
T ss_pred ----CCeeeCCCCHHHEEECCCCCEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHH
Confidence 479999998431 0112247889999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHH----------------------HHHHhCCC---CccccccccccchhhhhhhhHHHHHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRR----------------------WVKESLPH---RLSEVVDTNLVREEQAFSAKMDCLLSIMDL 632 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~----------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 632 (669)
|+.||...... ..... +....... .+.......+... .....+......+.++
T Consensus 213 g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 290 (353)
T cd07850 213 GTVLFPGTDHI-DQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPP-DSESHNKLKASQARDL 290 (353)
T ss_pred CCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCc-ccccccccchhHHHHH
Confidence 99998643110 00000 00000000 0000000000000 0000012345567899
Q ss_pred HhhcccCCCCCCCCHHHHHH
Q 040540 633 ALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 633 ~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.+|++.||++|||+.|+++
T Consensus 291 i~~~L~~dP~~R~t~~eiL~ 310 (353)
T cd07850 291 LSKMLVIDPEKRISVDDALQ 310 (353)
T ss_pred HHHHcCCChhhCcCHHHHhc
Confidence 99999999999999999985
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-20 Score=182.91 Aligned_cols=182 Identities=19% Similarity=0.209 Sum_probs=136.1
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+..++.++|+|++++++++... ...++++||+++++|.+++... ..+++.....++.+++.|+.|||.
T Consensus 49 ~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~al~~LH~--- 124 (264)
T cd06653 49 NALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAY-GALTENVTRRYTRQILQGVSYLHS--- 124 (264)
T ss_pred HHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 3566789999999999999999987653 4467899999999999999753 347888899999999999999994
Q ss_pred CCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+++.. ......|+..|+|||+..+..++.++|||||||++||++
T Consensus 125 -~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~ 203 (264)
T cd06653 125 -NMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEML 203 (264)
T ss_pred -CCEecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHH
Confidence 479999988320 001124788999999998888899999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||..... .....+..... .... .+......+.+++.+|++ +|..||++.+++.
T Consensus 204 ~g~~p~~~~~~----~~~~~~~~~~~-~~~~-------------~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~ 260 (264)
T cd06653 204 TEKPPWAEYEA----MAAIFKIATQP-TKPM-------------LPDGVSDACRDFLKQIFV-EEKRRPTAEFLLR 260 (264)
T ss_pred hCCCCCCccCH----HHHHHHHHcCC-CCCC-------------CCcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence 99999865311 11111111000 0000 122334567899999999 5799999998754
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-20 Score=187.85 Aligned_cols=197 Identities=20% Similarity=0.161 Sum_probs=133.8
Q ss_pred cCchhhhhhccccccccceeccccccc--------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP--------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~--------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
.+.+|+..++.++|+|++++++.+... ...++|+||+. +++.+.+......+++.....++.++++|+.||
T Consensus 53 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~-~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~l 131 (311)
T cd07866 53 TALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMD-HDLSGLLENPSVKLTESQIKCYMLQLLEGINYL 131 (311)
T ss_pred hHHHHHHHHHhcCCCCccchhhheecccccccccCceEEEEEecCC-cCHHHHHhccccCCCHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999876442 24589999997 478888776556789999999999999999999
Q ss_pred hcCCCCCCeeecCCCCccc------------------------------------ccccccccccCccccccC-CCcCcc
Q 040540 520 RHGHSSAPIIHCEGEDSVT------------------------------------QTTTMATIGYMAPEYGSE-GIVSAK 562 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~~------------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~ 562 (669)
|. .+++|+|+++... .+...|++.|+|||...+ ..++.+
T Consensus 132 H~----~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 207 (311)
T cd07866 132 HE----NHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTA 207 (311)
T ss_pred Hh----CCeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCch
Confidence 94 4799999884200 011135777999998765 458899
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHh--CCC-------Cccc----cccccccchhhhhhhhHHHHHHH
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES--LPH-------RLSE----VVDTNLVREEQAFSAKMDCLLSI 629 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~--~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 629 (669)
+|||||||++|||++|+.||...... .......... .++ .+.. .......... ..........+
T Consensus 208 ~Dv~slG~il~el~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 284 (311)
T cd07866 208 VDIWGIGCVFAEMFTRRPILQGKSDI-DQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTL--EERFGKLGPEG 284 (311)
T ss_pred hHhHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccH--HHHcccCChhH
Confidence 99999999999999999998643211 0111111100 000 0000 0000000000 00011223567
Q ss_pred HHHHhhcccCCCCCCCCHHHHHH
Q 040540 630 MDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 630 ~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.+++.+|++.||++|||+.|++.
T Consensus 285 ~~~i~~~l~~~p~~R~t~~ell~ 307 (311)
T cd07866 285 LDLLSKLLSLDPYKRLTASDALE 307 (311)
T ss_pred HHHHHHHcccCcccCcCHHHHhc
Confidence 89999999999999999999864
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=188.40 Aligned_cols=197 Identities=18% Similarity=0.195 Sum_probs=138.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++......+++|||++ |+|.+++.. ...+++.....++.++++|++|||. .+
T Consensus 66 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~-~~~~~~~~~~~~~~ql~~aL~~LH~----~~ 139 (335)
T PTZ00024 66 TTLRELKIMNEIKHENIMGLVDVYVEGDFINLVMDIMA-SDLKKVVDR-KIRLTESQVKCILLQILNGLNVLHK----WY 139 (335)
T ss_pred hHHHHHHHHHhCCCcceeeeeEEEecCCcEEEEEeccc-cCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 35578899999999999999999988889999999997 699999874 3458888999999999999999994 47
Q ss_pred eeecCCCCcc--------------------c-------------------ccccccccccCccccccCC-CcCccccchh
Q 040540 528 IIHCEGEDSV--------------------T-------------------QTTTMATIGYMAPEYGSEG-IVSAKCDVYS 567 (669)
Q Consensus 528 i~h~d~~~~~--------------------~-------------------~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s 567 (669)
++|+|+++.. . .....++..|+|||++.+. .++.++||||
T Consensus 140 i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~s 219 (335)
T PTZ00024 140 FMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWS 219 (335)
T ss_pred eecccccHHHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHH
Confidence 9999988430 0 0011357789999988764 4789999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCC----CCccccc-----cccccchhhhh-hhhHHHHHHHHHHHhhcc
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP----HRLSEVV-----DTNLVREEQAF-SAKMDCLLSIMDLALDCC 637 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~l~~~c~ 637 (669)
+||++|||+||+.||..... ......+..... ..+.... .+......... .........+.+++.+|+
T Consensus 220 lG~~l~el~tg~~p~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l 297 (335)
T PTZ00024 220 VGCIFAELLTGKPLFPGENE--IDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLL 297 (335)
T ss_pred HHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHc
Confidence 99999999999999865321 111111111110 0000000 00000000000 001123456789999999
Q ss_pred cCCCCCCCCHHHHHH
Q 040540 638 MESPDKRMHMTDAAA 652 (669)
Q Consensus 638 ~~~P~~Rps~~~v~~ 652 (669)
+.+|++||++.|++.
T Consensus 298 ~~~P~~R~s~~~~l~ 312 (335)
T PTZ00024 298 KLNPLERISAKEALK 312 (335)
T ss_pred CCCchhccCHHHHhc
Confidence 999999999999975
|
|
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=187.71 Aligned_cols=202 Identities=21% Similarity=0.194 Sum_probs=138.2
Q ss_pred cCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+..+..++|+|++++++++... ...+++|||+. ++|.+++... ..+++.....++.++++|+.|||.
T Consensus 50 ~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~- 126 (337)
T cd07858 50 RTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TDLHQIIRSS-QTLSDDHCQYFLYQLLRGLKYIHS- 126 (337)
T ss_pred HHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEeCCC-CCHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 344688899999999999999887543 34689999997 7899998753 458899999999999999999994
Q ss_pred CCCCCeeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHH
Q 040540 523 HSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+++.. ......|+..|+|||.+.. ..++.++|||||||++|||+
T Consensus 127 ---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~ 203 (337)
T cd07858 127 ---ANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELL 203 (337)
T ss_pred ---CCEecCCCCHHHEEEcCCCCEEECcCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHH
Confidence 479999988431 0012247888999998765 45889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCC----CCccccccccc-------cc-h-hhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLP----HRLSEVVDTNL-------VR-E-EQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~-------~~-~-~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
+|+.||..... ............ +....+.+... .. . ........+.+..+.+++.+|++.+|++
T Consensus 204 ~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~ 281 (337)
T cd07858 204 GRKPLFPGKDY--VHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSK 281 (337)
T ss_pred cCCCCCCCCCh--HHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhh
Confidence 99999865321 000000000000 00000000000 00 0 0000011245567889999999999999
Q ss_pred CCCHHHHHHH--HHHh
Q 040540 644 RMHMTDAAAK--LKKI 657 (669)
Q Consensus 644 Rps~~~v~~~--l~~~ 657 (669)
|||++|+++- ++.+
T Consensus 282 Rps~~ell~h~~~~~~ 297 (337)
T cd07858 282 RITVEEALAHPYLASL 297 (337)
T ss_pred ccCHHHHHcCcchhhh
Confidence 9999999874 5443
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-20 Score=190.42 Aligned_cols=196 Identities=21% Similarity=0.202 Sum_probs=135.4
Q ss_pred cCchhhhhhccccccccceeccccccccc------cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDF------KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~------~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+..++.++|+|++++.+.+..... .++|+||+ +++|.+++.. ..+++.....++.++++|++|||.
T Consensus 60 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~ql~~aL~~LH~ 136 (343)
T cd07851 60 RTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLNNIVKC--QKLSDDHIQFLVYQILRGLKYIHS 136 (343)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999887765544 78999998 5799999875 458999999999999999999994
Q ss_pred CCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhC
Q 040540 522 GHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......++..|+|||...+ ..++.++|||||||++||++||
T Consensus 137 ----~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg 212 (343)
T cd07851 137 ----AGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTG 212 (343)
T ss_pred ----CCeecCCCCHHHeEECCCCCEEEccccccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhC
Confidence 479999998531 0112347888999998765 3578999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCcccc------------ccccccchhhhhh-hhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEV------------VDTNLVREEQAFS-AKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
+.||..... ...+.. .....+....+. +.........++. ........+.+++.+|++.+|++||
T Consensus 213 ~~pf~~~~~-~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rp 290 (343)
T cd07851 213 KTLFPGSDH-IDQLKR-IMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRI 290 (343)
T ss_pred CCCCCCCCh-HHHHHH-HHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCC
Confidence 999864221 111111 111110000000 0000000000000 0112356788999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
|+.||++
T Consensus 291 t~~ell~ 297 (343)
T cd07851 291 TAAEALA 297 (343)
T ss_pred CHHHHhc
Confidence 9999976
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-20 Score=190.32 Aligned_cols=180 Identities=22% Similarity=0.282 Sum_probs=141.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+++|..+.|||||+++.+.......|+||||+.+|.+++++.+++.. .......++.|+.+|++|+|. ..
T Consensus 101 k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~~ge~~~yl~~~gr~-~e~~ar~~F~q~vsaveYcH~----k~ 175 (596)
T KOG0586|consen 101 KLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYASGGELFDYLVKHGRM-KEKEARAKFRQIVSAVEYCHS----KN 175 (596)
T ss_pred HHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEeccCchhHHHHHhcccc-hhhhhhhhhHHHHHHHHHHhh----cc
Confidence 4678999999999999999999999999999999999999999999976654 447777888999999999994 57
Q ss_pred eeecCCCCc------------------------ccccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|.. ....+.+|++.|.|||++.+..| ++++|+||+||++|-++.|..||
T Consensus 176 ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPF 255 (596)
T KOG0586|consen 176 IVHRDLKAENILLDENMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPF 255 (596)
T ss_pred eeccccchhhcccccccceeeeccccceeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeeccccc
Confidence 999999832 11234469999999999998765 57899999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++..-.. + .+.......+. +--...++.+++.+.+..+|.+|+++.++.+
T Consensus 256 DG~~lk~--L----------------r~rvl~gk~rI--p~~ms~dce~lLrk~lvl~Pskr~~~dqim~ 305 (596)
T KOG0586|consen 256 DGQNLKE--L----------------RPRVLRGKYRI--PFYMSCDCEDLLRKFLVLNPSKRGPCDQIMK 305 (596)
T ss_pred CCccccc--c----------------cchheeeeecc--cceeechhHHHHHHhhccCccccCCHHHhhh
Confidence 8632111 0 01111111111 1123345779999999999999999999876
|
|
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=174.97 Aligned_cols=202 Identities=21% Similarity=0.209 Sum_probs=142.4
Q ss_pred chhhhhhccccccc-cceecccccccc------ccceeeccCCCCChHHhhhcCC---CccCHHHHHHHHHhHHhhhhhh
Q 040540 450 DSECEVLRNVRHRN-LIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHN---YFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 450 ~~e~~~l~~l~h~n-iv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~---~~l~~~~~~~i~~~i~~~l~~l 519 (669)
.+|+.++..++|+| ++.+.+.+...+ ..++|+||++ .+|.+++.... ..++......++.|+.+|++||
T Consensus 58 iREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d-~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~ 136 (323)
T KOG0594|consen 58 IREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLD-RDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFL 136 (323)
T ss_pred hHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEEEeec-ccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999 999999987766 6789999997 69999998644 3467677889999999999999
Q ss_pred hcCCCCCCeeecCCCCc-------------------------ccccccccccccCccccccCC-CcCccccchhhHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLM 573 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~ 573 (669)
|. .+|+|||+|+. ...+..++|..|.|||++.+. .|+...|+||+|||+.
T Consensus 137 H~----~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfa 212 (323)
T KOG0594|consen 137 HS----HGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFA 212 (323)
T ss_pred Hh----CCeecccCCcceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHH
Confidence 94 58999999954 123445689999999999886 5999999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHH-HhCC--CCccccc---ccc-----ccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVK-ESLP--HRLSEVV---DTN-----LVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~-~~~~--~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
||++++.-|.+... ..++..-.+ -+.| ..+.... +-. ..+...-.........+..+++.+|++.+|.
T Consensus 213 Em~~~~~LFpG~se-~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~ 291 (323)
T KOG0594|consen 213 EMFTRRPLFPGDSE-IDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPA 291 (323)
T ss_pred HHHhCCCCCCCCcH-HHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcc
Confidence 99998877765322 111111111 1111 1111111 000 0000000000111124788999999999999
Q ss_pred CCCCHHHHHHH--HHHh
Q 040540 643 KRMHMTDAAAK--LKKI 657 (669)
Q Consensus 643 ~Rps~~~v~~~--l~~~ 657 (669)
+|.|++.+++. +..+
T Consensus 292 ~R~Sa~~al~h~yf~~~ 308 (323)
T KOG0594|consen 292 KRISAKGALTHPYFSEL 308 (323)
T ss_pred cCcCHHHHhcChhhccc
Confidence 99999999875 5444
|
|
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-19 Score=187.92 Aligned_cols=199 Identities=20% Similarity=0.188 Sum_probs=135.4
Q ss_pred ccCchhhhhhccccccccceecccccc-ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..++|||++++.+++.. ....++++||+. ++|.++++. ..+++.....++.++++|+.|||.
T Consensus 54 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~ql~~aL~~LH~---- 126 (328)
T cd07856 54 KRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELLG-TDLHRLLTS--RPLEKQFIQYFLYQILRGLKYVHS---- 126 (328)
T ss_pred HHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEEeehhc-cCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 345678999999999999999998765 456789999985 689888864 346777888899999999999995
Q ss_pred CCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCC
Q 040540 526 APIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 526 ~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
.+++|+|+++.. ......++..|+|||.+.+ ..++.++|||||||++|||+||+.||
T Consensus 127 ~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f 206 (328)
T cd07856 127 AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLF 206 (328)
T ss_pred CCcccCCCCHHHEeECCCCCEEeCccccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCC
Confidence 479999988431 0112246788999998765 56899999999999999999999998
Q ss_pred CcCCCCCccHHHHHHH--hCCCCcc-ccccc-------cccc-hh-hhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 583 DEMFTGEMSLRRWVKE--SLPHRLS-EVVDT-------NLVR-EE-QAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~--~~~~~~~-~~~~~-------~~~~-~~-~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
...... .....+.+. ..++++. ...+. .+.. .. +...........+.+++.+|++.+|++||++.++
T Consensus 207 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~el 285 (328)
T cd07856 207 PGKDHV-NQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEA 285 (328)
T ss_pred CCCCHH-HHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 653210 001000000 0000000 00000 0000 00 0000011234678899999999999999999999
Q ss_pred HHH
Q 040540 651 AAK 653 (669)
Q Consensus 651 ~~~ 653 (669)
+..
T Consensus 286 l~~ 288 (328)
T cd07856 286 LAH 288 (328)
T ss_pred hcC
Confidence 764
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=184.92 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=126.7
Q ss_pred hhhccccccccceecccccccc----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 454 EVLRNVRHRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 454 ~~l~~l~h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
..+..+.|++++.+++++.... ..++++|++. .++.+.+... ...++.....|+.++++|++|+|. .+++
T Consensus 75 ~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~----~~ii 148 (294)
T PHA02882 75 KNIHNIDHLGIPKYYGCGSFKRCRMYYRFILLEKLV-ENTKEIFKRI-KCKNKKLIKNIMKDMLTTLEYIHE----HGIS 148 (294)
T ss_pred HHhccCCCCCCCcEEEeeeEecCCceEEEEEEehhc-cCHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHh----CCee
Confidence 3455678999999988665432 3356777764 3666666532 235677788999999999999994 4799
Q ss_pred ecCCCCcc--------------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 530 HCEGEDSV--------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 530 h~d~~~~~--------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
|||+|+.. ......||+.|+|||+..+..++.++|||||||++|||++
T Consensus 149 HrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~ 228 (294)
T PHA02882 149 HGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAG 228 (294)
T ss_pred cCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHh
Confidence 99998430 0011248999999999998889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
|+.||....... .+.......+..++. ...+ ....++..+.+++..||..+|++||++.++.+.+
T Consensus 229 g~~P~~~~~~~~-~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~ 293 (294)
T PHA02882 229 IKLPWKGFGHNG-NLIHAAKCDFIKRLH---EGKI--------KIKNANKFIYDFIECVTKLSYEEKPDYDALIKIF 293 (294)
T ss_pred CCCCCCccccch-HHHHHhHHHHHHHhh---hhhh--------ccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence 999997642211 111111110000000 0000 0112245678999999999999999999998875
|
|
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=183.62 Aligned_cols=184 Identities=21% Similarity=0.179 Sum_probs=134.8
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.++..+ +|++++++++.+..+...++||||+++++|.+++... ..+++.....++.++++|+.|||. .
T Consensus 50 ~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH~----~ 124 (290)
T cd05613 50 HTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLHK----L 124 (290)
T ss_pred HHHHHHHHHHhcccCCChhceeeEeecCCeEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 455688888888 5899999999888888889999999999999999753 457888888899999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccC--CCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......|+..|+|||.... ..++.++||||||+++|||+||
T Consensus 125 ~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g 204 (290)
T cd05613 125 GIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTG 204 (290)
T ss_pred CeeccCCCHHHeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcC
Confidence 79999988430 0012247889999998865 3477899999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
+.||.... ................ + +.+......+.+++.+||+.+|++|| ++.++..
T Consensus 205 ~~p~~~~~-~~~~~~~~~~~~~~~~------~---------~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~ 267 (290)
T cd05613 205 ASPFTVDG-EKNSQAEISRRILKSE------P---------PYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKK 267 (290)
T ss_pred CCCCCcCC-ccccHHHHHHHhhccC------C---------CCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence 99986421 1111222221111000 0 01122345678999999999999997 5555544
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-20 Score=181.33 Aligned_cols=177 Identities=23% Similarity=0.178 Sum_probs=137.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|+|++++++.+......+++|||+++++|.+++... ..+++.....++.++++|+.|+|. .+
T Consensus 39 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lh~----~~ 113 (250)
T cd05123 39 HTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKE-GRFSEERARFYAAEIVLALEYLHS----LG 113 (250)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 5667888999999999999999999899999999999999999999754 358999999999999999999994 57
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......|+..|++||...+...+.++|+||||+++||+++|+.||
T Consensus 114 ~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~ 193 (250)
T cd05123 114 IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPF 193 (250)
T ss_pred ceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence 9999988531 011224788999999998888889999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
..... ..+...+.. ... +.+......+.+++.+||..||++||++.+
T Consensus 194 ~~~~~--~~~~~~~~~---~~~---------------~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~ 240 (250)
T cd05123 194 YAEDR--KEIYEKILK---DPL---------------RFPEFLSPEARDLISGLLQKDPTKRLGSGG 240 (250)
T ss_pred CCCCH--HHHHHHHhc---CCC---------------CCCCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence 65321 111111111 000 001112345689999999999999999954
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-21 Score=187.87 Aligned_cols=293 Identities=21% Similarity=0.210 Sum_probs=214.2
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc-cC
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY-NN 134 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~ 134 (669)
.+-++.++. .+|..+- .....++|..|.|+.+.|.+|+.+++||.||||+|+|+..-|+.|.+|.+|..|-+-+ |+
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 455555554 3444332 2467899999999988889999999999999999999988999999999998877766 99
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC-----
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG----- 209 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~----- 209 (669)
|+......|++|..|+.|.+.-|++.......|..|++|..|.+..|.+...--..|..+..++.+.+..|.+-.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 997666789999999999999999999999999999999999999999986555589999999999988887421
Q ss_pred -------CCCccccCCCCCcEEEcccCCCccccc-hhhhccCCCCCeeecccCcccccCC-ccccCCCCCCEEeCCCCCc
Q 040540 210 -------LIPPTIFNISTMRILTLESNQLSGRLP-STIGHSLRNIEYLALSTNNLIGKIP-NSITNATKLIGLDLGFNSF 280 (669)
Q Consensus 210 -------~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~n~l 280 (669)
..|.+++......-..+.++++. +++ ..+...+..+..=-.+.+...+.-| ..|..+++|+.|+|++|++
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 11222223332233333333332 222 1222111111111112222333333 3588899999999999999
Q ss_pred cccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeec
Q 040540 281 SGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELG 360 (669)
Q Consensus 281 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~ 360 (669)
+++-+.+|.++..++.|.|..|++..... ..+.++++|++|+|.+|+++...|..+. .+..|..+.+-
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~--------~~f~~ls~L~tL~L~~N~it~~~~~aF~----~~~~l~~l~l~ 354 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSS--------GMFQGLSGLKTLSLYDNQITTVAPGAFQ----TLFSLSTLNLL 354 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHH--------HhhhccccceeeeecCCeeEEEeccccc----ccceeeeeehc
Confidence 99999999999999999999999876532 3467889999999999999987766543 34555666655
Q ss_pred Cccc
Q 040540 361 FNDL 364 (669)
Q Consensus 361 ~n~l 364 (669)
.|.+
T Consensus 355 ~Np~ 358 (498)
T KOG4237|consen 355 SNPF 358 (498)
T ss_pred cCcc
Confidence 5543
|
|
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=188.14 Aligned_cols=200 Identities=19% Similarity=0.164 Sum_probs=134.7
Q ss_pred cCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+.+++.++|+|++++++++.... ..++|+||+. +++.++.. ..+++.....++.++++|++|||.
T Consensus 60 ~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~ 135 (342)
T cd07879 60 RAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQ-TDLQKIMG---HPLSEDKVQYLVYQMLCGLKYIHS 135 (342)
T ss_pred HHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEecccc-cCHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999998876432 3489999997 47776653 347888899999999999999995
Q ss_pred CCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhC
Q 040540 522 GHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......|+..|+|||++.+ ..++.++|||||||++|||++|
T Consensus 136 ----~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g 211 (342)
T cd07879 136 ----AGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTG 211 (342)
T ss_pred ----CCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhC
Confidence 479999998531 1112346788999998866 4588999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCC---cccccc-----------ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHR---LSEVVD-----------TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
+.||..... .....-.....+.. ..+... +...... ...........+.+++.+||+.||++|
T Consensus 212 ~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~dP~~R 288 (342)
T cd07879 212 KTLFKGKDY--LDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKD-FSTLFPKASPQAVDLLEKMLELDVDKR 288 (342)
T ss_pred CCCCCCCCH--HHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccch-HHHHhcCCCHHHHHHHHHHcCCChhhC
Confidence 999965211 11111011100000 000000 0000000 000011234567899999999999999
Q ss_pred CCHHHHHH--HHHHhH
Q 040540 645 MHMTDAAA--KLKKIK 658 (669)
Q Consensus 645 ps~~~v~~--~l~~~~ 658 (669)
|+++|++. .+++++
T Consensus 289 ~~~~e~l~h~~f~~~~ 304 (342)
T cd07879 289 LTATEALEHPYFDSFR 304 (342)
T ss_pred cCHHHHhcCcchhhcc
Confidence 99999985 355554
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-19 Score=199.61 Aligned_cols=251 Identities=22% Similarity=0.406 Sum_probs=196.0
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+.+.|++++++++. +|..+. ++|+.|+|++|.++ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 457899999999874 565443 57999999999998 5666554 58999999999998 5676553 58999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|+++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|++++ +|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 999998 6777665 58999999999998 5777664 589999999999985 555443 479999999999986
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.+.. +|..+.
T Consensus 319 LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~- 387 (754)
T PRK15370 319 LPETLP--PGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP- 387 (754)
T ss_pred CCcccc--ccceeccccCCccc-cCChhhc---CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH-
Confidence 455443 68999999999998 4776653 68999999999987 4666553 689999999999984 555443
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG 337 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 337 (669)
..|+.|++++|++...+... ......++++..+++.+|++.
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl-----~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESL-----PHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcccCchhH-----HHHhhcCCCccEEEeeCCCcc
Confidence 36888999999988654321 122345577888999998876
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=209.24 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=122.4
Q ss_pred ccccc-cccceeccccc-------cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 457 RNVRH-RNLIKIISSCS-------NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 457 ~~l~h-~niv~l~~~~~-------~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+..+| +||+.++++|. .....+.++||++ ++|++++......+++.+...|+.|+++||.|||. .+|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~----~gI 101 (793)
T PLN00181 27 KSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECED-VSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHS----QGI 101 (793)
T ss_pred chhhHHHHHHHhhcccCCccccccccchhhhhhccCC-ccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHh----CCe
Confidence 34556 67878888762 2234567788885 69999998655678999999999999999999994 589
Q ss_pred eecCCCCccccc------------------------------------------------------------cccccccc
Q 040540 529 IHCEGEDSVTQT------------------------------------------------------------TTMATIGY 548 (669)
Q Consensus 529 ~h~d~~~~~~~~------------------------------------------------------------~~~gt~~y 548 (669)
+|||+|+..... ...||+.|
T Consensus 102 vHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y 181 (793)
T PLN00181 102 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWY 181 (793)
T ss_pred eeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcce
Confidence 999999641100 02367789
Q ss_pred CccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHH
Q 040540 549 MAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLS 628 (669)
Q Consensus 549 ~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (669)
||||++.+..|+.++|||||||++|||++|..|+.... ..+........+ +. .......
T Consensus 182 ~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~---~~~~~~~~~~~~--------~~----------~~~~~~~ 240 (793)
T PLN00181 182 TSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS---RTMSSLRHRVLP--------PQ----------ILLNWPK 240 (793)
T ss_pred EChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH---HHHHHHHHhhcC--------hh----------hhhcCHH
Confidence 99999998889999999999999999999988864311 011111111100 10 0111234
Q ss_pred HHHHHhhcccCCCCCCCCHHHHHH
Q 040540 629 IMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 629 ~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
..+++.+||+.+|.+||+|.||++
T Consensus 241 ~~~~~~~~L~~~P~~Rps~~eil~ 264 (793)
T PLN00181 241 EASFCLWLLHPEPSCRPSMSELLQ 264 (793)
T ss_pred HHHHHHHhCCCChhhCcChHHHhh
Confidence 567889999999999999999975
|
|
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-19 Score=178.47 Aligned_cols=185 Identities=26% Similarity=0.279 Sum_probs=142.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|++++++++.+......++++||+++++|.+++..... +++.....++.++++++.|||..
T Consensus 32 ~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~l~~~l~~lh~~---- 106 (244)
T smart00220 32 ERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKRGR-LSEDEARFYARQILSALEYLHSN---- 106 (244)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHc----
Confidence 4667889999999999999999999888889999999999999999975433 78899999999999999999954
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+++|+|+++.. ......|+..|++||......++.++||||||++++|+++|+.||
T Consensus 107 ~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~ 186 (244)
T smart00220 107 GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPF 186 (244)
T ss_pred CeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 79999987320 112234788999999998888899999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... +.....++........ . . ........+.+++.+|+..+|++||++.++++
T Consensus 187 ~~~~-~~~~~~~~~~~~~~~~----~-~----------~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~ 240 (244)
T smart00220 187 PGDD-QLLELFKKIGKPKPPF----P-P----------PEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ 240 (244)
T ss_pred CCCC-cHHHHHHHHhccCCCC----c-c----------ccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence 6521 1112222222111110 0 0 00003356789999999999999999999986
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-19 Score=184.91 Aligned_cols=133 Identities=31% Similarity=0.406 Sum_probs=113.7
Q ss_pred cCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhcC--CCccCHHHHHHHHHhHHhhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSH--NYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~--~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
....|++++++++|+|||++++.-... ....+|||||.+|+|+..+.+. ...+++.+.+.+..+++.|+.||
T Consensus 57 ~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~L 136 (732)
T KOG4250|consen 57 RWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHL 136 (732)
T ss_pred HHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999998876543 3567999999999999999862 34689999999999999999999
Q ss_pred hcCCCCCCeeecCCCCc----------------------------ccccccccccccCccccccC-CCcCccccchhhHH
Q 040540 520 RHGHSSAPIIHCEGEDS----------------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGV 570 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~----------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv 570 (669)
|+ .+|+|||+|+. ....+.+||..|.+||++.. +.|+..+|.|||||
T Consensus 137 rE----n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~Gv 212 (732)
T KOG4250|consen 137 RE----NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGV 212 (732)
T ss_pred HH----cCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhh
Confidence 94 48999999953 12234579999999999985 78999999999999
Q ss_pred HHHHHHhCCCCCCc
Q 040540 571 LLMETFTRKRPTDE 584 (669)
Q Consensus 571 il~el~tg~~p~~~ 584 (669)
++||.+||..||..
T Consensus 213 tlY~caTG~lPF~p 226 (732)
T KOG4250|consen 213 TLYECATGELPFIP 226 (732)
T ss_pred HHHHHhccCCCCCc
Confidence 99999999999965
|
|
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=181.70 Aligned_cols=181 Identities=22% Similarity=0.251 Sum_probs=139.1
Q ss_pred ccCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|..++..++ |+|++++++.+...+..+++|||+++++|.+++.+. ..+++.....++.+++.|+.|||.
T Consensus 46 ~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~ql~~~l~~Lh~---- 120 (280)
T cd05581 46 KYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKY-GSLDEKCTRFYAAEILLALEYLHS---- 120 (280)
T ss_pred HHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 34566788888888 999999999998888999999999999999999864 368999999999999999999994
Q ss_pred CCeeecCCCCcc---------------------------------------------cccccccccccCccccccCCCcC
Q 040540 526 APIIHCEGEDSV---------------------------------------------TQTTTMATIGYMAPEYGSEGIVS 560 (669)
Q Consensus 526 ~~i~h~d~~~~~---------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~ 560 (669)
.+++|+|+++.. ......|+..|+|||......++
T Consensus 121 ~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~ 200 (280)
T cd05581 121 KGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAG 200 (280)
T ss_pred CCeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCC
Confidence 479999987320 00112367899999998888899
Q ss_pred ccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCC
Q 040540 561 AKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 561 ~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~ 640 (669)
.++||||+|++++|+++|+.||.... .....+.+.. . ... .+......+.+++.+||..+
T Consensus 201 ~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~~~~~---~--~~~-------------~~~~~~~~~~~li~~~l~~~ 260 (280)
T cd05581 201 KSSDLWALGCIIYQMLTGKPPFRGSN--EYLTFQKILK---L--EYS-------------FPPNFPPDAKDLIEKLLVLD 260 (280)
T ss_pred hhhhHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHh---c--CCC-------------CCCccCHHHHHHHHHHhcCC
Confidence 99999999999999999999987532 1111111110 0 000 01122445789999999999
Q ss_pred CCCCCCH----HHHHH
Q 040540 641 PDKRMHM----TDAAA 652 (669)
Q Consensus 641 P~~Rps~----~~v~~ 652 (669)
|++||++ +++++
T Consensus 261 p~~R~~~~~~~~~ll~ 276 (280)
T cd05581 261 PQDRLGVNEGYDELKA 276 (280)
T ss_pred HhhCCCcccCHHHHhc
Confidence 9999999 66653
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-19 Score=185.79 Aligned_cols=129 Identities=21% Similarity=0.236 Sum_probs=107.5
Q ss_pred hhhhhhcccc------ccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 451 SECEVLRNVR------HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 451 ~e~~~l~~l~------h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.|+.++..++ --|+|++++++...+..+||+|... .+|+++++..+ ..++......|+.||+.||.+||.
T Consensus 231 ~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfELL~-~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~-- 307 (586)
T KOG0667|consen 231 IEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFELLS-TNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHE-- 307 (586)
T ss_pred HHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeehhhh-hhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh--
Confidence 4677777665 2489999999999999999999886 79999998643 357888888999999999999994
Q ss_pred CCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 524 SSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 524 ~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|||||+|+.. ...+.+-+..|.|||++.+.+|+.+.|+||||||+.||+||.
T Consensus 308 --l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~ 385 (586)
T KOG0667|consen 308 --LGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGE 385 (586)
T ss_pred --CCeeeccCChhheeeccCCcCceeEEecccccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCc
Confidence 489999999641 111334578899999999999999999999999999999997
Q ss_pred CCCCc
Q 040540 580 RPTDE 584 (669)
Q Consensus 580 ~p~~~ 584 (669)
+-|.+
T Consensus 386 PLfpG 390 (586)
T KOG0667|consen 386 PLFPG 390 (586)
T ss_pred cccCC
Confidence 65544
|
|
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-19 Score=186.62 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=132.7
Q ss_pred ccCchhhhhhccccccccceeccccccc--------------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--------------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDV 512 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--------------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i 512 (669)
+.+..|+.+++.++|+|++++++.+... ...++||||++ ++|.+++.. ..+++.....++.|+
T Consensus 47 ~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~l~~~~~~~~~~qi 123 (342)
T cd07854 47 KHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYME-TDLANVLEQ--GPLSEEHARLFMYQL 123 (342)
T ss_pred HHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccceEEEEeeccc-ccHHHHHHc--CCCCHHHHHHHHHHH
Confidence 3456789999999999999998766543 34679999997 589888864 347888999999999
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCccc-----------------------------ccccccccccCccccccC-CCcCcc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDSVT-----------------------------QTTTMATIGYMAPEYGSE-GIVSAK 562 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~~~-----------------------------~~~~~gt~~y~aPE~~~~-~~~~~~ 562 (669)
+.|+.|||.. +++|+|+++... .....|+..|+|||+..+ ..++.+
T Consensus 124 ~~aL~~LH~~----givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 199 (342)
T cd07854 124 LRGLKYIHSA----NVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKA 199 (342)
T ss_pred HHHHHHHHhC----CcccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCch
Confidence 9999999954 799999884310 001136778999997654 558889
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCcc----c---ccccccc--chhhhh---hhhHHHHHHHH
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLS----E---VVDTNLV--REEQAF---SAKMDCLLSIM 630 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~----~---~~~~~~~--~~~~~~---~~~~~~~~~~~ 630 (669)
+|||||||++|||++|+.||...... ..+...... .+.... . ....... ....+. .........+.
T Consensus 200 ~DiwSlGvil~el~~g~~pf~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (342)
T cd07854 200 IDMWAAGCIFAEMLTGKPLFAGAHEL-EQMQLILES-VPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEAL 277 (342)
T ss_pred hhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHh-cCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHH
Confidence 99999999999999999999653211 111111110 000000 0 0000000 000000 00112345678
Q ss_pred HHHhhcccCCCCCCCCHHHHHH
Q 040540 631 DLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 631 ~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+++.+|++.||.+|||++|+++
T Consensus 278 ~li~~~L~~dP~~R~t~~ell~ 299 (342)
T cd07854 278 DFLEQILTFNPMDRLTAEEALM 299 (342)
T ss_pred HHHHHHhCCCchhccCHHHHhC
Confidence 9999999999999999999975
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-20 Score=182.42 Aligned_cols=176 Identities=18% Similarity=0.227 Sum_probs=138.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
....|-.+|..++.+.||+++..+.+..++|+.||-|-+|.++..+++++. ++.....-|+..+.+|++||| +++
T Consensus 466 Hv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWTiLrdRg~-Fdd~tarF~~acv~EAfeYLH----~k~ 540 (732)
T KOG0614|consen 466 HVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGGELWTILRDRGS-FDDYTARFYVACVLEAFEYLH----RKG 540 (732)
T ss_pred HHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCchhhhhhhhcCC-cccchhhhhHHHHHHHHHHHH----hcC
Confidence 455688899999999999999999999999999999999999999997655 555555567888999999999 568
Q ss_pred eeecCCCCc------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 528 IIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 528 i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
||.||+|+. ....+++||+.|+|||++..+.++.++|.||+||++||++||++||.
T Consensus 541 iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs 620 (732)
T KOG0614|consen 541 IIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFS 620 (732)
T ss_pred ceeccCChhheeeccCCceEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCC
Confidence 999999954 23456789999999999999999999999999999999999999997
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
+..+ +..+- .+-+.+ .....|......+.+++.+.+..+|.+|..
T Consensus 621 ~~dp----mktYn----------~ILkGi----d~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG 665 (732)
T KOG0614|consen 621 GVDP----MKTYN----------LILKGI----DKIEFPRRITKTATDLIKKLCRDNPTERLG 665 (732)
T ss_pred CCch----HHHHH----------HHHhhh----hhhhcccccchhHHHHHHHHHhcCcHhhhc
Confidence 6422 22210 000000 001112344456788999999999999975
|
|
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-19 Score=183.58 Aligned_cols=197 Identities=20% Similarity=0.189 Sum_probs=133.0
Q ss_pred cCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+..+..++|+|++++++.+... ...+++++++ +++|.+++.. ..+++..+..++.++++|++|||.
T Consensus 62 ~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~ 138 (345)
T cd07877 62 RTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIHS 138 (345)
T ss_pred HHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEehhc-ccCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999999999999877532 2356778876 6899988864 348899999999999999999995
Q ss_pred CCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhC
Q 040540 522 GHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......|+..|+|||...+ ..++.++|||||||++|||++|
T Consensus 139 ----~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g 214 (345)
T cd07877 139 ----ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTG 214 (345)
T ss_pred ----CCeeecCCChHHEEEcCCCCEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhC
Confidence 479999998531 0112347889999998766 4588999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhC--CCCccccccccccc----hhhh-----h-hhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 579 KRPTDEMFTGEMSLRRWVKESL--PHRLSEVVDTNLVR----EEQA-----F-SAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~----~~~~-----~-~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
+.||..... ...+...++... +......+...... ..+. + .........+.+++.+|++.||.+||+
T Consensus 215 ~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t 293 (345)
T cd07877 215 RTLFPGTDH-IDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRIT 293 (345)
T ss_pred CCCCCCCCH-HHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCC
Confidence 999864221 111111111110 00000000000000 0000 0 000123456789999999999999999
Q ss_pred HHHHHH
Q 040540 647 MTDAAA 652 (669)
Q Consensus 647 ~~~v~~ 652 (669)
+.++++
T Consensus 294 ~~e~l~ 299 (345)
T cd07877 294 AAQALA 299 (345)
T ss_pred HHHHhc
Confidence 999876
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-19 Score=183.59 Aligned_cols=197 Identities=21% Similarity=0.173 Sum_probs=132.1
Q ss_pred cCchhhhhhccc-cccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+..+..+ .|+|++++++.+.. ....++++||+. ++|.+++.. ...+++.....++.|++.||+|||.
T Consensus 47 ~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~- 123 (332)
T cd07857 47 RALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLYEELME-ADLHQIIRS-GQPLTDAHFQSFIYQILCGLKYIHS- 123 (332)
T ss_pred HHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEEEeccc-CCHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 455688888888 59999999886532 244678888886 689999874 3468899999999999999999995
Q ss_pred CCCCCeeecCCCCccc-----------------------------ccccccccccCccccccC-CCcCccccchhhHHHH
Q 040540 523 HSSAPIIHCEGEDSVT-----------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLL 572 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~~-----------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil 572 (669)
.+++|+|+++... .....||..|+|||+..+ ..++.++||||+||++
T Consensus 124 ---~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l 200 (332)
T cd07857 124 ---ANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCIL 200 (332)
T ss_pred ---CCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHH
Confidence 4799999884310 011257889999998765 4588999999999999
Q ss_pred HHHHhCCCCCCcCCCCCccHHHHHHHhCCCC----cccccccc-------ccc-hhhhhh-hhHHHHHHHHHHHhhcccC
Q 040540 573 METFTRKRPTDEMFTGEMSLRRWVKESLPHR----LSEVVDTN-------LVR-EEQAFS-AKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~-------~~~-~~~~~~-~~~~~~~~~~~l~~~c~~~ 639 (669)
|||++|+.||.... .......+....... ...+..+. ... ....+. ........+.+++.+|++.
T Consensus 201 ~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~ 278 (332)
T cd07857 201 AELLGRKPVFKGKD--YVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAF 278 (332)
T ss_pred HHHHhCCcCCCCCC--HHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccC
Confidence 99999999986522 111111111100000 00000000 000 000000 0111245688999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
||++|||+.|+++
T Consensus 279 ~P~~R~t~~~ll~ 291 (332)
T cd07857 279 DPTKRISVEEALE 291 (332)
T ss_pred CcccCCCHHHHhc
Confidence 9999999999865
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-19 Score=182.92 Aligned_cols=197 Identities=20% Similarity=0.170 Sum_probs=134.7
Q ss_pred cCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+.++..++|+|++++++.+.... ..++||||+ +++|.+++.. ..+++.....++.++++|++|||.
T Consensus 60 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~--~~l~~~~~~~i~~qi~~al~~LH~ 136 (343)
T cd07880 60 RAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKH--EKLSEDRIQFLVYQMLKGLKYIHA 136 (343)
T ss_pred HHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3557899999999999999998876543 347999999 6799988864 357899999999999999999994
Q ss_pred CCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhC
Q 040540 522 GHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+++.. ......+++.|+|||.+.+ ..++.++||||+||++||+++|
T Consensus 137 ----~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g 212 (343)
T cd07880 137 ----AGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTG 212 (343)
T ss_pred ----CCeecCCCCHHHEEEcCCCCEEEeecccccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 479999998531 0112246889999998865 4588999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCC--Cccccccc--------cccch-hhhh-hhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPH--RLSEVVDT--------NLVRE-EQAF-SAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~--------~~~~~-~~~~-~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
+.||...... ..+....+..... .+...+.. .+... ...+ .........+.+++.+|++.||++|||
T Consensus 213 ~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t 291 (343)
T cd07880 213 KPLFKGHDHL-DQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRIT 291 (343)
T ss_pred CCCCCCCCHH-HHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCC
Confidence 9998653210 1111111110000 00000000 00000 0000 001233456789999999999999999
Q ss_pred HHHHHH
Q 040540 647 MTDAAA 652 (669)
Q Consensus 647 ~~~v~~ 652 (669)
+.+++.
T Consensus 292 ~~~~l~ 297 (343)
T cd07880 292 AAEALA 297 (343)
T ss_pred HHHHhc
Confidence 999984
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-19 Score=176.76 Aligned_cols=179 Identities=21% Similarity=0.246 Sum_probs=139.9
Q ss_pred chhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCC-ccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
..|-.++.++..+.||.+-.++...+..++|+..|.||+|.-.|++.+. .+++....-++.+|+.||++||. .+|
T Consensus 233 LnEk~iL~kV~s~FiVslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~----~~i 308 (591)
T KOG0986|consen 233 LNEKQILEKVSSPFIVSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHR----RRI 308 (591)
T ss_pred hHHHHHHHHhccCcEEEEeeeecCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHh----cce
Confidence 3577789999999999998888889999999999999999999987543 47888888899999999999994 489
Q ss_pred eecCCCCc------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 529 IHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 529 ~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
+-||+|+. ...+..+||.+|||||++....|+..+|+||+||++|||+.|+.||..
T Consensus 309 VYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~ 388 (591)
T KOG0986|consen 309 VYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQ 388 (591)
T ss_pred eeccCChhheeeccCCCeEeeccceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhh
Confidence 99999853 123344799999999999999999999999999999999999999864
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
...... .+-+|..+..+.. ..++..++++.+++...+.+||.+|...+
T Consensus 389 ~KeKvk--------------~eEvdrr~~~~~~--ey~~kFS~eakslc~~LL~Kdp~~RLGcr 436 (591)
T KOG0986|consen 389 RKEKVK--------------REEVDRRTLEDPE--EYSDKFSEEAKSLCEGLLTKDPEKRLGCR 436 (591)
T ss_pred hhhhhh--------------HHHHHHHHhcchh--hcccccCHHHHHHHHHHHccCHHHhccCC
Confidence 321110 0112222222111 12355667788999999999999998654
|
|
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-20 Score=171.00 Aligned_cols=180 Identities=21% Similarity=0.206 Sum_probs=130.4
Q ss_pred hccccccccceeccccccccccceeeccCCCCChHHhhhc----CCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeec
Q 040540 456 LRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS----HNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC 531 (669)
Q Consensus 456 l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~----~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~ 531 (669)
++.-..|+||+++|++...+..||.||.|+ .++..+.+. ....+++.-..+|.....+||.||... ..||||
T Consensus 117 mks~~cp~IVkfyGa~F~EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~---lkiIHR 192 (361)
T KOG1006|consen 117 MKSSNCPNIVKFYGALFSEGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE---LKIIHR 192 (361)
T ss_pred HhhcCCcHHHHHhhhhhcCCceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH---hhhhhc
Confidence 344468999999999999999999999996 677665432 234567777778888899999999754 579999
Q ss_pred CCCCc------------------------ccccccccccccCccccccC--CCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 532 EGEDS------------------------VTQTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 532 d~~~~------------------------~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
|+|++ ...+...|-..|||||-+.. ..|+.++||||+||+|+|++||+.||...
T Consensus 193 DvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w 272 (361)
T KOG1006|consen 193 DVKPSNILLDRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKW 272 (361)
T ss_pred cCChhheEEecCCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchH
Confidence 99975 12333458889999998865 34899999999999999999999998763
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
..-..++.+.+...+ + .+.... ...+....+..++.-|+.+|-+.||+..++.+
T Consensus 273 ~svfeql~~Vv~gdp-p--------~l~~~~----~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~ 326 (361)
T KOG1006|consen 273 DSVFEQLCQVVIGDP-P--------ILLFDK----ECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK 326 (361)
T ss_pred HHHHHHHHHHHcCCC-C--------eecCcc----cccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence 221112222222111 1 111100 01235567889999999999999999998865
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-19 Score=170.54 Aligned_cols=162 Identities=22% Similarity=0.237 Sum_probs=126.0
Q ss_pred cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCc---
Q 040540 460 RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDS--- 536 (669)
Q Consensus 460 ~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~--- 536 (669)
+.|.++.+..+++..+..|.||||+.+|+|--.++.-+. .-+..+.-++.+||-||-||| +.+||.||+|-.
T Consensus 408 kppFL~qlHScFQTmDRLyFVMEyvnGGDLMyhiQQ~Gk-FKEp~AvFYAaEiaigLFFLh----~kgIiYRDLKLDNvm 482 (683)
T KOG0696|consen 408 KPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGK-FKEPVAVFYAAEIAIGLFFLH----SKGIIYRDLKLDNVM 482 (683)
T ss_pred CCchHHHHHHHhhhhhheeeEEEEecCchhhhHHHHhcc-cCCchhhhhhHHHHHHhhhhh----cCCeeeeeccccceE
Confidence 578888999999999999999999999999888875433 455677778999999999999 458999998821
Q ss_pred ----------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHH
Q 040540 537 ----------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRR 594 (669)
Q Consensus 537 ----------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~ 594 (669)
....+.+||+.|+|||++....|+..+|+|||||+||||+.|++||++. ++..+.+
T Consensus 483 Ld~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe--DE~elF~ 560 (683)
T KOG0696|consen 483 LDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE--DEDELFQ 560 (683)
T ss_pred eccCCceEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC--CHHHHHH
Confidence 2344568999999999999999999999999999999999999999873 2222322
Q ss_pred HHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 595 WVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
.+ ++..+ .++...+.++..++..-+.+.|.+|..
T Consensus 561 aI-----------~ehnv-------syPKslSkEAv~ickg~ltK~P~kRLG 594 (683)
T KOG0696|consen 561 AI-----------MEHNV-------SYPKSLSKEAVAICKGLLTKHPGKRLG 594 (683)
T ss_pred HH-----------HHccC-------cCcccccHHHHHHHHHHhhcCCccccC
Confidence 22 11111 123344556778888889999999963
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-19 Score=167.38 Aligned_cols=170 Identities=23% Similarity=0.210 Sum_probs=130.4
Q ss_pred hhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeee
Q 040540 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH 530 (669)
Q Consensus 451 ~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h 530 (669)
.|..++...+||.+..+-..++..+..+.||||..+|.|+-.|.+.+ .+++....-+-..|..||.|||+ ..|+.
T Consensus 217 TE~RVL~~~~HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsrer-~FsE~RtRFYGaEIvsAL~YLHs----~~ivY 291 (516)
T KOG0690|consen 217 TENRVLQNCRHPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSRER-VFSEDRTRFYGAEIVSALGYLHS----RNIVY 291 (516)
T ss_pred hHHHHHHhccCcHHHHhhhhhccCceEEEEEEEccCceEeeehhhhh-cccchhhhhhhHHHHHHhhhhhh----CCeee
Confidence 46778889999999999888999999999999999999999887543 35555555577889999999995 47999
Q ss_pred cCCCC-------------------------cccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 531 CEGED-------------------------SVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 531 ~d~~~-------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
||+|- .....+++|||.|.|||++.+..|+.++|+|..||++|||+.|+.||...
T Consensus 292 RDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~ 371 (516)
T KOG0690|consen 292 RDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNK 371 (516)
T ss_pred eechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccccc
Confidence 99871 12345678999999999999999999999999999999999999999763
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
. ...+.+.+- .+..++ +....+++..+....+.+||.+|.
T Consensus 372 d--h~kLFeLIl----------------~ed~kF--Pr~ls~eAktLLsGLL~kdP~kRL 411 (516)
T KOG0690|consen 372 D--HEKLFELIL----------------MEDLKF--PRTLSPEAKTLLSGLLKKDPKKRL 411 (516)
T ss_pred c--hhHHHHHHH----------------hhhccC--CccCCHHHHHHHHHHhhcChHhhc
Confidence 2 222221110 000111 223344567788889999999996
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-20 Score=160.83 Aligned_cols=164 Identities=29% Similarity=0.515 Sum_probs=109.9
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLE 150 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 150 (669)
+.++++++.|-||+|.++ .+|..+..+.+|+.|++++|++. .+|.+++++++|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 556666777777777776 45555677777777777777776 56667777777777777777765 5677777777777
Q ss_pred eeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccC
Q 040540 151 MLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESN 229 (669)
Q Consensus 151 ~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n 229 (669)
+||+.+|+++. .+|..|..|+.|+.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|.+++.++.|+.|.+++|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 77777766653 45666666666666677777664 56666677777777777776665 35666666666666666666
Q ss_pred CCccccchhhh
Q 040540 230 QLSGRLPSTIG 240 (669)
Q Consensus 230 ~l~~~~p~~~~ 240 (669)
+++ .+|+.++
T Consensus 184 rl~-vlppel~ 193 (264)
T KOG0617|consen 184 RLT-VLPPELA 193 (264)
T ss_pred eee-ecChhhh
Confidence 665 4555443
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-18 Score=194.29 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=71.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++.+......++||||+++++|.+++... ..+++.....|+.+++.||+|||. .+
T Consensus 50 ~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~~li~~~-~~l~~~~~~~i~~qil~aL~yLH~----~g 124 (669)
T cd05610 50 QVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIY-GYFDEEMAVKYISEVALALDYLHR----HG 124 (669)
T ss_pred HHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4567888889999999999999988888999999999999999999753 357888889999999999999994 37
Q ss_pred eeecCCC
Q 040540 528 IIHCEGE 534 (669)
Q Consensus 528 i~h~d~~ 534 (669)
|+|||+|
T Consensus 125 IiHrDLK 131 (669)
T cd05610 125 IIHRDLK 131 (669)
T ss_pred EEeCCcc
Confidence 8888765
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-18 Score=189.55 Aligned_cols=182 Identities=19% Similarity=0.277 Sum_probs=136.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.|+.|-.+|.....+=|+.+..++++..+.|+|||||+||+|-.++.+.. .++..-..-++..+.-||+-+|. .+
T Consensus 121 ~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVMdY~pGGDlltLlSk~~-~~pE~~ArFY~aEiVlAldslH~----mg 195 (1317)
T KOG0612|consen 121 CFREERDIMVFGNSEWIVQLHYAFQDERYLYLVMDYMPGGDLLTLLSKFD-RLPEDWARFYTAEIVLALDSLHS----MG 195 (1317)
T ss_pred HHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEEecccCchHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHh----cc
Confidence 46778888888888889999999999999999999999999999998765 56766666677889999999995 48
Q ss_pred eeecCCCCc--------------------------ccccccccccccCcccccc----C-CCcCccccchhhHHHHHHHH
Q 040540 528 IIHCEGEDS--------------------------VTQTTTMATIGYMAPEYGS----E-GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 528 i~h~d~~~~--------------------------~~~~~~~gt~~y~aPE~~~----~-~~~~~~~Dv~s~Gvil~el~ 576 (669)
.||||+|+. ......+|||-|.+||++. + +.|+..+|+||+||++|||+
T Consensus 196 yVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMl 275 (1317)
T KOG0612|consen 196 YVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEML 275 (1317)
T ss_pred ceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHH
Confidence 999999964 1123457999999999874 3 56999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC---HHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH---MTDAA 651 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps---~~~v~ 651 (669)
.|..||.+.. ++. ..+++++. .+...||...+.+..+.++|.+.+. +|+.|.. ++|+.
T Consensus 276 yG~TPFYads-----lve--------TY~KIm~h---k~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik 336 (1317)
T KOG0612|consen 276 YGETPFYADS-----LVE--------TYGKIMNH---KESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIK 336 (1317)
T ss_pred cCCCcchHHH-----HHH--------HHHHHhch---hhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHH
Confidence 9999996521 111 12223322 1112233334566778888887664 6677776 66664
|
|
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-18 Score=169.46 Aligned_cols=186 Identities=23% Similarity=0.315 Sum_probs=137.6
Q ss_pred chhhhhhccccccccceeccccccc-cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNP-DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
.+|..+-..+.||-||++++++..+ +..+-|+|||++.+|.-+|+.+ ..+++.++..|+.+|+.||.||... .+||
T Consensus 515 cREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQh-klmSEKEARSIiMQiVnAL~YLNEi--kpPI 591 (775)
T KOG1151|consen 515 CREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQH-KLMSEKEARSIIMQIVNALKYLNEI--KPPI 591 (775)
T ss_pred HHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhcc--CCCe
Confidence 4567788889999999999998764 4568999999999999999865 4588899999999999999999765 8999
Q ss_pred eecCCCCc----------------------------------cccc-ccccccccCccccccC----CCcCccccchhhH
Q 040540 529 IHCEGEDS----------------------------------VTQT-TTMATIGYMAPEYGSE----GIVSAKCDVYSYG 569 (669)
Q Consensus 529 ~h~d~~~~----------------------------------~~~~-~~~gt~~y~aPE~~~~----~~~~~~~Dv~s~G 569 (669)
||.|+|+. ...+ ...||.+|.+||.+.- .+.+.|+||||.|
T Consensus 592 IHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvG 671 (775)
T KOG1151|consen 592 IHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVG 671 (775)
T ss_pred eeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeee
Confidence 99999843 0111 2358999999997753 3478899999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
||.|..+.|+.||........ +.+ .. ..+....-.||..+....++..+|.+|++..-++|-...+
T Consensus 672 VIFyQClYGrKPFGhnqsQQd-ILq---eN----------TIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~q 737 (775)
T KOG1151|consen 672 VIFYQCLYGRKPFGHNQSQQD-ILQ---EN----------TILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQ 737 (775)
T ss_pred hhhhhhhccCCCCCCchhHHH-HHh---hh----------chhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHH
Confidence 999999999999976322211 111 00 0111111123333445567789999999988888877666
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
++.
T Consensus 738 LA~ 740 (775)
T KOG1151|consen 738 LAC 740 (775)
T ss_pred Hcc
Confidence 543
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-19 Score=180.22 Aligned_cols=187 Identities=20% Similarity=0.263 Sum_probs=142.9
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+...+.|+-+++.++|+||+.++|.+..++..+++||||.+|+|.+..+. -.++.+.+..-+.+...+|++|||.
T Consensus 56 ~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycgggslQdiy~~-TgplselqiayvcRetl~gl~ylhs---- 130 (829)
T KOG0576|consen 56 FSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYHV-TGPLSELQIAYVCRETLQGLKYLHS---- 130 (829)
T ss_pred ccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCcccceeee-cccchhHHHHHHHhhhhccchhhhc----
Confidence 34566789999999999999999999999999999999999999998874 3568888888888999999999994
Q ss_pred CCeeecCCCCc-------------------------ccccccccccccCcccccc---CCCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+-+|||+|.. .+..+++||+.|||||+.. .+.|..++|||+.|++..|+..
T Consensus 131 ~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~e 210 (829)
T KOG0576|consen 131 QGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGE 210 (829)
T ss_pred CCcccccccccceeecccCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhh
Confidence 46799999832 2345568999999999863 4569999999999999999988
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
-++|..+..... .+.-..++.++ +.... .+......+.+++..|+.++|.+||+++..++
T Consensus 211 Lqpplfdlhpmr-~l~LmTkS~~q--------pp~lk------Dk~kws~~fh~fvK~altknpKkRptaeklL~ 270 (829)
T KOG0576|consen 211 LQPPLFDLHPMR-ALFLMTKSGFQ--------PPTLK------DKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ 270 (829)
T ss_pred cCCcccccchHH-HHHHhhccCCC--------CCccc------CCccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence 888865422111 01111111111 11111 13445667889999999999999999987665
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-20 Score=158.68 Aligned_cols=163 Identities=31% Similarity=0.573 Sum_probs=149.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|.||+|.++ .+|+.++.+.+|++|++++|++. .+|..++.+++|+.|+++-|++. .+|..|+.++-|++|||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 46899999999997 67778999999999999999998 78889999999999999999997 78999999999999999
Q ss_pred cccCccc-cCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 131 DYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 131 ~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
++|++.. .+|+.|+.|+-|+.|+++.|.+. .+|..+++|++|+.|.+..|.+. .+|..++.++.|+.|.+.+|+++.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence 9999874 68999999999999999999986 78999999999999999999997 789999999999999999999995
Q ss_pred CCCccccCCC
Q 040540 210 LIPPTIFNIS 219 (669)
Q Consensus 210 ~~p~~~~~l~ 219 (669)
+|++++++.
T Consensus 188 -lppel~~l~ 196 (264)
T KOG0617|consen 188 -LPPELANLD 196 (264)
T ss_pred -cChhhhhhh
Confidence 566666553
|
|
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-18 Score=152.20 Aligned_cols=140 Identities=24% Similarity=0.235 Sum_probs=112.9
Q ss_pred hccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecC
Q 040540 456 LRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE 532 (669)
Q Consensus 456 l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d 532 (669)
++...+|..|.++|.......++|.||.|+ .+|..+-++ .+..+++.-.-+|+..|.+|+.|||.. ..+||||
T Consensus 99 ~r~~~CPf~V~FyGa~~regdvwIcME~M~-tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k---L~vIHRD 174 (282)
T KOG0984|consen 99 MRTVDCPFTVHFYGALFREGDVWICMELMD-TSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK---LSVIHRD 174 (282)
T ss_pred ccCCCCCeEEEeehhhhccccEEEeHHHhh-hhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH---hhhhhcc
Confidence 445679999999999999999999999997 688777653 567788888999999999999999954 6799999
Q ss_pred CCCcc------------------------cccccccccccCccccccC----CCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 533 GEDSV------------------------TQTTTMATIGYMAPEYGSE----GIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 533 ~~~~~------------------------~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
+|++. ..+...|--.|||||.+.. ..|+.|+||||+|++++||++++.||+.
T Consensus 175 vKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~ 254 (282)
T KOG0984|consen 175 VKPSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYES 254 (282)
T ss_pred CCcceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccc
Confidence 99751 1122346778999998753 4699999999999999999999999988
Q ss_pred CCCCCccHHHHHHHh
Q 040540 585 MFTGEMSLRRWVKES 599 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~ 599 (669)
.......+.+.|.+.
T Consensus 255 w~tpF~qLkqvVeep 269 (282)
T KOG0984|consen 255 WGTPFQQLKQVVEEP 269 (282)
T ss_pred cCCHHHHHHHHhcCC
Confidence 665555566655544
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-19 Score=184.61 Aligned_cols=177 Identities=23% Similarity=0.248 Sum_probs=93.9
Q ss_pred EEcCCCCCc-ccccccccCCCCCCEEeCCCCcCccc----CCcccCCCCCCCEEEccCCcCCc------cCCccccCCcc
Q 040540 56 LNLSDMGLG-GTIPLHFGNLSFLVSLDISENNFHGH----LPKELGQLRRLRVMSLAYNKLSG------SFPSWIGVLSK 124 (669)
Q Consensus 56 L~ls~~~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~ 124 (669)
|+|+.+.++ +.....+..+.+|++|+++++.++.. ++..+...+.|+.|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 555555555 22333455566677777777766432 34445566667777777766652 22344555667
Q ss_pred cccccccccCccccCCcccCCCCC---CCeeecccccccc----cCCcccCCC-CCCCEEEcccCCCccc----CCcccc
Q 040540 125 LRILRLDYNNFTGPIPNSLFNLSR---LEMLRAEFNIIGG----TIPSRIGNL-RKLVNLGLWSCNLQGQ----IPTEIG 192 (669)
Q Consensus 125 L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~l~~n~l~~----~~p~~~~~L-~~L~~L~l~~n~l~~~----~p~~~~ 192 (669)
|+.|++++|.+.+..+..+..+.+ |+.|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 777777777666444444444333 6666666665542 222233444 5566666666665522 223344
Q ss_pred CCCCCCEEEccCCCCCCC----CCccccCCCCCcEEEcccCCCc
Q 040540 193 SLQNLKNLDLADNKLSGL----IPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 193 ~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
.+++|++|++++|.+++. ++..+...++|+.|++++|.++
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 445566666666655531 1222333345555555555543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-18 Score=162.71 Aligned_cols=196 Identities=18% Similarity=0.215 Sum_probs=134.3
Q ss_pred hhhhhccccc------cccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 452 ECEVLRNVRH------RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 452 e~~~l~~l~h------~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
|+.++.++.+ .-++.+.+++.-.+..+||+|.+ +.|+++++.+.+ .+.+......++.|+.++++|||+
T Consensus 135 Ei~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~--- 210 (415)
T KOG0671|consen 135 EIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHD--- 210 (415)
T ss_pred HHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHh---
Confidence 5666666621 13455566677788889999987 469999998743 467888889999999999999994
Q ss_pred CCCeeecCCCCc------------------------------------------ccccccccccccCccccccCCCcCcc
Q 040540 525 SAPIIHCEGEDS------------------------------------------VTQTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 525 ~~~i~h~d~~~~------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.+++|-|+|+. ....+.+.|..|.|||++.+-..+.+
T Consensus 211 -~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~p 289 (415)
T KOG0671|consen 211 -LKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQP 289 (415)
T ss_pred -cceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCc
Confidence 48999998843 01122357889999999999999999
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCC-CCCccHHHHHHHhCCCCccc-----------ccc----------ccccchh----
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMF-TGEMSLRRWVKESLPHRLSE-----------VVD----------TNLVREE---- 616 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~-~~~~~l~~~~~~~~~~~~~~-----------~~~----------~~~~~~~---- 616 (669)
+||||+||||+|+.||..-|..-. .+...+.+.+-..+|..... .+| ......+
T Consensus 290 CDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~ 369 (415)
T KOG0671|consen 290 CDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLK 369 (415)
T ss_pred cCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHH
Confidence 999999999999999998775311 12122222222222221100 000 0000000
Q ss_pred hhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 617 QAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 617 ~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.-+...+.+-..+.|++.+++..||.+|+|++|+++
T Consensus 370 ~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~ 405 (415)
T KOG0671|consen 370 KYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALS 405 (415)
T ss_pred HHhccCcHHHhHHHHHHHHHHccCccccccHHHHhc
Confidence 111223456667999999999999999999999875
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=158.19 Aligned_cols=129 Identities=22% Similarity=0.224 Sum_probs=108.6
Q ss_pred hhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeee
Q 040540 452 ECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH 530 (669)
Q Consensus 452 e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h 530 (669)
|-.+.... .||.+|.+..+++.....+.|.||+++|+|--.+.+ ...+++..+.-+...|.-||.|||. ++||.
T Consensus 300 ek~vfe~asn~pflvglhscfqtesrlffvieyv~ggdlmfhmqr-qrklpeeharfys~ei~lal~flh~----rgiiy 374 (593)
T KOG0695|consen 300 EKHVFEQASNNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEICLALNFLHE----RGIIY 374 (593)
T ss_pred hHHHHHhccCCCeEEehhhhhcccceEEEEEEEecCcceeeehhh-hhcCcHHHhhhhhHHHHHHHHHHhh----cCeee
Confidence 33344433 699999999999999999999999999999877764 4458888887888899999999994 58999
Q ss_pred cCCCC-------------------------cccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 531 CEGED-------------------------SVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 531 ~d~~~-------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
||+|- .....+++||+.|.|||++.+..|+..+|+|++||+++||+.|+.||+-.
T Consensus 375 rdlkldnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdiv 454 (593)
T KOG0695|consen 375 RDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIV 454 (593)
T ss_pred eeccccceEEccCCceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCccee
Confidence 99871 12345668999999999999999999999999999999999999999753
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-17 Score=158.18 Aligned_cols=192 Identities=22% Similarity=0.228 Sum_probs=136.3
Q ss_pred ccCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.-.+|...+..+.|+|+++++.++... ...|+|||||+ ++|.+.+.- .++-.....|..|+..|++|+|
T Consensus 60 kra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~~---elDH~tis~i~yq~~~~ik~lh 135 (369)
T KOG0665|consen 60 KRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVILM---ELDHETISYILYQMLCGIKHLH 135 (369)
T ss_pred hhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHHH---hcchHHHHHHHHHHHHHHHHHH
Confidence 3445788899999999999999887543 35689999997 799998873 2566677789999999999999
Q ss_pred cCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+.+|+|||+|++. ..+..+.|..|.|||++.+..|.+.+||||.||++.||+
T Consensus 136 ----s~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli 211 (369)
T KOG0665|consen 136 ----SAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELI 211 (369)
T ss_pred ----hcceeecccCcccceecchhheeeccchhhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHh
Confidence 4589999999651 122335788999999999988999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHH------------------------hCCC----CccccccccccchhhhhhhhHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKE------------------------SLPH----RLSEVVDTNLVREEQAFSAKMDCLLS 628 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~------------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (669)
+|+.-|.+ ...+-+|.+. ..++ ...+.+...+.... .....-....
T Consensus 212 ~~~Vlf~g----~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~--~e~~~~~~~~ 285 (369)
T KOG0665|consen 212 LGTVLFPG----KDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVV--LEGSKLDCSL 285 (369)
T ss_pred hceEEecC----chHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCccccccc--ccCCccchHH
Confidence 99987643 2223333211 0010 01111111110000 0001123345
Q ss_pred HHHHHhhcccCCCCCCCCHHHHHH
Q 040540 629 IMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 629 ~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.+++.+++..+|++|-+++++++
T Consensus 286 ardll~~MLvi~pe~Risv~daL~ 309 (369)
T KOG0665|consen 286 ARDLLSKMLVIDPEKRISVDDALR 309 (369)
T ss_pred HHHHHHHhhccChhhcccHHHHhc
Confidence 678999999999999999999875
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-18 Score=179.64 Aligned_cols=202 Identities=22% Similarity=0.259 Sum_probs=121.9
Q ss_pred EEeCCCCcCc-ccCCcccCCCCCCCEEEccCCcCCc----cCCccccCCcccccccccccCccc------cCCcccCCCC
Q 040540 79 SLDISENNFH-GHLPKELGQLRRLRVMSLAYNKLSG----SFPSWIGVLSKLRILRLDYNNFTG------PIPNSLFNLS 147 (669)
Q Consensus 79 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~ 147 (669)
.|+|..+.++ ...+..+..+..|+.|+++++.++. .++..+...++|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5778888876 3445556777889999999998853 245566777788899988887762 2334456677
Q ss_pred CCCeeecccccccccCCcccCCCCC---CCEEEcccCCCcc----cCCccccCC-CCCCEEEccCCCCCCC----CCccc
Q 040540 148 RLEMLRAEFNIIGGTIPSRIGNLRK---LVNLGLWSCNLQG----QIPTEIGSL-QNLKNLDLADNKLSGL----IPPTI 215 (669)
Q Consensus 148 ~L~~L~l~~n~l~~~~p~~~~~L~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~l~~N~l~~~----~p~~~ 215 (669)
+|+.|++++|.+.+..+..+..+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 7777777777776555555544444 7777777777652 223334455 6677777777776632 22334
Q ss_pred cCCCCCcEEEcccCCCcccc----chhhhccCCCCCeeecccCccccc----CCccccCCCCCCEEeCCCCCcc
Q 040540 216 FNISTMRILTLESNQLSGRL----PSTIGHSLRNIEYLALSTNNLIGK----IPNSITNATKLIGLDLGFNSFS 281 (669)
Q Consensus 216 ~~l~~L~~L~l~~n~l~~~~----p~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~ 281 (669)
..+.+|++|++++|.+++.. +..+. ..++|++|++++|.+.+. +...+..+++|+.|++++|.+.
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 45556666666666665321 11121 234666666666655422 1223344555666666665554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-18 Score=179.62 Aligned_cols=178 Identities=21% Similarity=0.288 Sum_probs=130.2
Q ss_pred hhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCC---ccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 451 SECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY---FLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 451 ~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~---~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+|+..+... .|||+|+++|....+++.||+.|.|.+ +|.+++..... .........+..|++.|+++||. -
T Consensus 551 rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs----l 625 (903)
T KOG1027|consen 551 REIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS----L 625 (903)
T ss_pred HHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh----c
Confidence 466666555 599999999999999999999999974 99999986311 11114456788999999999994 5
Q ss_pred CeeecCCCCcc---------------------------------cccccccccccCccccccCCCcCccccchhhHHHHH
Q 040540 527 PIIHCEGEDSV---------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLM 573 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~ 573 (669)
+|+|||+|+.. ...+..||.+|+|||++....-+.++|++|+|||+|
T Consensus 626 ~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfy 705 (903)
T KOG1027|consen 626 KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFY 705 (903)
T ss_pred ccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEE
Confidence 89999999530 012234899999999998887788999999999999
Q ss_pred HHHhC-CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 574 ETFTR-KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 574 el~tg-~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.++|| +.||.+....+..+.. .... +. .+. ...++ .+.++|.+++..+|..||++.+|+.
T Consensus 706 YvltgG~HpFGd~~~R~~NIl~--------~~~~-L~-~L~-------~~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~ 766 (903)
T KOG1027|consen 706 YVLTGGSHPFGDSLERQANILT--------GNYT-LV-HLE-------PLPDC--EAKDLISRMLNPDPQLRPSATDVLN 766 (903)
T ss_pred EEecCCccCCCchHHhhhhhhc--------Cccc-ee-eec-------cCchH--HHHHHHHHhcCCCcccCCCHHHHhC
Confidence 99997 8899763322111110 0000 00 000 11222 6789999999999999999999975
|
|
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-17 Score=176.15 Aligned_cols=169 Identities=19% Similarity=0.170 Sum_probs=106.7
Q ss_pred ccccccceeeccCCCCChHHhhhcCCCcc-------------------CHHHHHHHHHhHHhhhhhhhcCCCCCCeeecC
Q 040540 472 SNPDFKALVLEFMPNGSLEKWLYSHNYFL-------------------DILERLNIMIDVGSALEYLRHGHSSAPIIHCE 532 (669)
Q Consensus 472 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~l-------------------~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d 532 (669)
......++||||+++++|.+++....... .......|+.|+++||+|||. .+|+|||
T Consensus 205 ~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~----~gIiHRD 280 (566)
T PLN03225 205 KKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS----TGIVHRD 280 (566)
T ss_pred ccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH----CCEEeCc
Confidence 34567789999999999999997532211 112244689999999999994 4899999
Q ss_pred CCCcc---------------------------cccccccccccCccccccCC----------------------CcCccc
Q 040540 533 GEDSV---------------------------TQTTTMATIGYMAPEYGSEG----------------------IVSAKC 563 (669)
Q Consensus 533 ~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~----------------------~~~~~~ 563 (669)
+|+.. ......||+.|||||.+... .+..++
T Consensus 281 LKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~ 360 (566)
T PLN03225 281 VKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRF 360 (566)
T ss_pred CCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCc
Confidence 99531 01123578899999965321 234567
Q ss_pred cchhhHHHHHHHHhCCCCCCcCC--------CCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 564 DVYSYGVLLMETFTRKRPTDEMF--------TGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 564 Dv~s~Gvil~el~tg~~p~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
|||||||++|||+++..|++... ........|.....+. . .+.+.. .+...+.......+++.+
T Consensus 361 DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~~~~~~---~~~~~d~~~~~~~dLi~~ 432 (566)
T PLN03225 361 DIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPR-A----SPDLRR---GFEVLDLDGGAGWELLKS 432 (566)
T ss_pred ccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccc-c----chhhhh---hhhhccccchHHHHHHHH
Confidence 99999999999999877654310 0011122232211110 0 000000 000011112245689999
Q ss_pred cccCCCCCCCCHHHHHH
Q 040540 636 CCMESPDKRMHMTDAAA 652 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~ 652 (669)
|++.||.+|||+.|+++
T Consensus 433 mL~~dP~kR~ta~e~L~ 449 (566)
T PLN03225 433 MMRFKGRQRISAKAALA 449 (566)
T ss_pred HccCCcccCCCHHHHhC
Confidence 99999999999999987
|
|
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-18 Score=168.80 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=141.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
...+|+.++.+++||.||.+...|..++.+++|||-+.+.-|.-.|..+...+++....-.+.||..||.|||+. +
T Consensus 609 qlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k----n 684 (888)
T KOG4236|consen 609 QLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK----N 684 (888)
T ss_pred HHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc----c
Confidence 456799999999999999999999999999999999975444444444556677776667778999999999975 8
Q ss_pred eeecCCCCc---------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 528 IIHCEGEDS---------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 528 i~h~d~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
|+|||+|+. ....+.+||+.|.|||++..+.|...-|+||.|||+|--++|..
T Consensus 685 IvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTF 764 (888)
T KOG4236|consen 685 IVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTF 764 (888)
T ss_pred eeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccc
Confidence 999999954 12334469999999999999999999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.+. ++..+..+-+. .+.| ...|.+....++|+|...++..=.+|.|....+.
T Consensus 765 PFNEd-EdIndQIQNAa---------FMyP--------p~PW~eis~~AidlIn~LLqVkm~kRysvdk~ls 818 (888)
T KOG4236|consen 765 PFNED-EDINDQIQNAA---------FMYP--------PNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLS 818 (888)
T ss_pred cCCCc-cchhHHhhccc---------cccC--------CCchhhcCHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence 99752 11111111111 1111 1236777888899999999999999999877654
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-17 Score=178.94 Aligned_cols=158 Identities=19% Similarity=0.206 Sum_probs=108.7
Q ss_pred cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCc----------------
Q 040540 473 NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDS---------------- 536 (669)
Q Consensus 473 ~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~---------------- 536 (669)
.+...||=||||+...+.+++++....-......+++++|+.|++|+|.. ++||||+|+.
T Consensus 667 ~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~----giIHRDLKP~NIFLd~~~~VKIGDFG 742 (1351)
T KOG1035|consen 667 KPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQ----GIIHRDLKPRNIFLDSRNSVKIGDFG 742 (1351)
T ss_pred cceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhC----ceeeccCCcceeEEcCCCCeeecccc
Confidence 34567888999999888888875433223455668999999999999954 6999999942
Q ss_pred ---------------------------ccccccccccccCccccccCC---CcCccccchhhHHHHHHHHhCCCCCCcCC
Q 040540 537 ---------------------------VTQTTTMATIGYMAPEYGSEG---IVSAKCDVYSYGVLLMETFTRKRPTDEMF 586 (669)
Q Consensus 537 ---------------------------~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~s~Gvil~el~tg~~p~~~~~ 586 (669)
...++.+||.-|+|||...+. +|+.|+|+||+|||++||+. ||....
T Consensus 743 LAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~TsM 819 (1351)
T KOG1035|consen 743 LATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTSM 819 (1351)
T ss_pred cchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCCchH
Confidence 134556899999999998764 49999999999999999975 444311
Q ss_pred CCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 587 TGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+......-.+ +..+..+ . ..+.+....-..++..++++||++|||+.|+++
T Consensus 820 -ERa~iL~~LR-----------~g~iP~~-~--~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~ 870 (1351)
T KOG1035|consen 820 -ERASILTNLR-----------KGSIPEP-A--DFFDPEHPEEASLIRWLLSHDPSKRPTATELLN 870 (1351)
T ss_pred -HHHHHHHhcc-----------cCCCCCC-c--ccccccchHHHHHHHHHhcCCCccCCCHHHHhh
Confidence 1111111111 1111111 0 012223334467899999999999999999986
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=163.81 Aligned_cols=136 Identities=21% Similarity=0.363 Sum_probs=113.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
....|-.++.....+=+|+++..+++.+..|+||||.+||++-.+|.+.+.+-..+.|. ++.++..|+++.|. .+
T Consensus 675 HVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSLLIrmgIFeE~LARF-YIAEltcAiesVHk----mG 749 (1034)
T KOG0608|consen 675 HVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFEEDLARF-YIAELTCAIESVHK----MG 749 (1034)
T ss_pred hhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEeccCCccHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHHh----cc
Confidence 34567888888999999999999999999999999999999999998765544445555 55678999999994 58
Q ss_pred eeecCCCCc-------------------------------------------------------------------cccc
Q 040540 528 IIHCEGEDS-------------------------------------------------------------------VTQT 540 (669)
Q Consensus 528 i~h~d~~~~-------------------------------------------------------------------~~~~ 540 (669)
+||||+|+. ....
T Consensus 750 FIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ah 829 (1034)
T KOG0608|consen 750 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAH 829 (1034)
T ss_pred ceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhh
Confidence 999999821 1123
Q ss_pred ccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCC
Q 040540 541 TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 588 (669)
Q Consensus 541 ~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~ 588 (669)
..+||+.|+|||++....|+.-+|+||.|||||||+.|+.||.+....
T Consensus 830 slvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~ 877 (1034)
T KOG0608|consen 830 SLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPG 877 (1034)
T ss_pred hhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCC
Confidence 346999999999999999999999999999999999999999765443
|
|
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-17 Score=152.00 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=106.0
Q ss_pred Cchhhhhhccccccccceecccccc-ccccceeeccCCCCChHHhhhcC----CCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSH----NYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~----~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
-.+|+..++.++|+|++.+...+.. +..+++++||.+ -+|.+.|+.+ ...++-....+|+-|+..|+.|||.
T Consensus 74 AcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAE-hDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~-- 150 (438)
T KOG0666|consen 74 ACREIALLRELKHPNVISLVKVFLSHDKKVWLLFDYAE-HDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHS-- 150 (438)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHhccCceEEEEehhhh-hhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhh--
Confidence 4578999999999999999887766 788899999998 4999999753 2356666778899999999999994
Q ss_pred CCCCeeecCCCCcc--------------------------------cccccccccccCccccccCC-CcCccccchhhHH
Q 040540 524 SSAPIIHCEGEDSV--------------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGV 570 (669)
Q Consensus 524 ~~~~i~h~d~~~~~--------------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv 570 (669)
.=|+|||+|+.. .....+-|..|.|||.+.+. .|+.+.||||.||
T Consensus 151 --NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGC 228 (438)
T KOG0666|consen 151 --NWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGC 228 (438)
T ss_pred --hheeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHH
Confidence 479999999541 01112458899999999885 4999999999999
Q ss_pred HHHHHHhCCCCCC
Q 040540 571 LLMETFTRKRPTD 583 (669)
Q Consensus 571 il~el~tg~~p~~ 583 (669)
|..||+|-++-|.
T Consensus 229 IfaElLtl~PlF~ 241 (438)
T KOG0666|consen 229 IFAELLTLEPLFK 241 (438)
T ss_pred HHHHHHccCcccc
Confidence 9999999876654
|
|
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-16 Score=167.14 Aligned_cols=186 Identities=19% Similarity=0.143 Sum_probs=122.0
Q ss_pred Cchhhhhhcccccccc-----ceecccccc--------ccccceeeccCCCCChHHhhhcCC------------------
Q 040540 449 FDSECEVLRNVRHRNL-----IKIISSCSN--------PDFKALVLEFMPNGSLEKWLYSHN------------------ 497 (669)
Q Consensus 449 ~~~e~~~l~~l~h~ni-----v~l~~~~~~--------~~~~~lv~ey~~~g~L~~~l~~~~------------------ 497 (669)
...|+.++.+++|+++ ++++++|.. ....++||||+++|+|.++++...
T Consensus 219 ~~vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~ 298 (507)
T PLN03224 219 GMVEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIP 298 (507)
T ss_pred hHHHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchh
Confidence 3446666777766554 566777643 345789999999999999987421
Q ss_pred -----CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCccc------------------------cc--cccccc
Q 040540 498 -----YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVT------------------------QT--TTMATI 546 (669)
Q Consensus 498 -----~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~~------------------------~~--~~~gt~ 546 (669)
..++|..+..++.++++|+.|+|. .+++|||+|+... .. ...+|+
T Consensus 299 ~~~~~~~~~~~~~~~i~~ql~~aL~~lH~----~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp 374 (507)
T PLN03224 299 DNMPQDKRDINVIKGVMRQVLTGLRKLHR----IGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDP 374 (507)
T ss_pred hhcccccCCHHHHHHHHHHHHHHHHHHHH----CCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCc
Confidence 123566778899999999999995 4799999985310 00 112478
Q ss_pred ccCccccccCCC--------------------cC--ccccchhhHHHHHHHHhCCC-CCCcCCCC-------CccHHHHH
Q 040540 547 GYMAPEYGSEGI--------------------VS--AKCDVYSYGVLLMETFTRKR-PTDEMFTG-------EMSLRRWV 596 (669)
Q Consensus 547 ~y~aPE~~~~~~--------------------~~--~~~Dv~s~Gvil~el~tg~~-p~~~~~~~-------~~~l~~~~ 596 (669)
.|+|||.+.... |+ .+.||||+||+++||++|.. |+.....- ...+..|.
T Consensus 375 ~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r 454 (507)
T PLN03224 375 RYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWR 454 (507)
T ss_pred ceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHH
Confidence 999999875321 12 35799999999999999975 65431110 11122221
Q ss_pred HHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCC---CCCCCHHHHHH
Q 040540 597 KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP---DKRMHMTDAAA 652 (669)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P---~~Rps~~~v~~ 652 (669)
... ....+++..+.......+++.+++..+| .+|+|++|+++
T Consensus 455 ~~~--------------~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~ 499 (507)
T PLN03224 455 MYK--------------GQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALS 499 (507)
T ss_pred hhc--------------ccCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhC
Confidence 110 0011122233445678899999999876 68999999874
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-16 Score=160.23 Aligned_cols=189 Identities=24% Similarity=0.307 Sum_probs=140.0
Q ss_pred hccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCC
Q 040540 456 LRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGED 535 (669)
Q Consensus 456 l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~ 535 (669)
++.+.|.|+.+++|.|..+...++|.+||.+|+|.+.+......++|.....+++++++|++|+|.. +...|...+.
T Consensus 1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s---~i~~hg~l~s 77 (484)
T KOG1023|consen 1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNS---PIGYHGALKS 77 (484)
T ss_pred CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcC---cceeeeeecc
Confidence 3568899999999999999999999999999999999998788899999999999999999999964 3337877664
Q ss_pred ccc--------c-------------------cccccccccCccccccCCC-------cCccccchhhHHHHHHHHhCCCC
Q 040540 536 SVT--------Q-------------------TTTMATIGYMAPEYGSEGI-------VSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 536 ~~~--------~-------------------~~~~gt~~y~aPE~~~~~~-------~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
..- . ....-..-|.|||.+.... .+.++||||||++++|+++.+.|
T Consensus 78 ~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~ 157 (484)
T KOG1023|consen 78 SNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGP 157 (484)
T ss_pred ccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCc
Confidence 310 0 0001223589999886631 46689999999999999999999
Q ss_pred CCcCCCCCc--cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 582 TDEMFTGEM--SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 582 ~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
|+....... .+...++.. ......|.+... .+....+..++.+||.++|.+||++++|...++.+-
T Consensus 158 ~~~~~~~~~~~eii~~~~~~----~~~~~rP~i~~~-------~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~ 225 (484)
T KOG1023|consen 158 FDLRNLVEDPDEIILRVKKG----GSNPFRPSIELL-------NELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTIN 225 (484)
T ss_pred cccccccCChHHHHHHHHhc----CCCCcCcchhhh-------hhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhc
Confidence 986443322 344444441 111222222211 133346789999999999999999999988877654
|
|
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-16 Score=143.08 Aligned_cols=195 Identities=19% Similarity=0.248 Sum_probs=134.0
Q ss_pred hhhhhhccccccccceecccccc--------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 451 SECEVLRNVRHRNLIKIISSCSN--------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 451 ~e~~~l~~l~h~niv~l~~~~~~--------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+|+.++..++|+|++.++..|.. ....++|+++|. -+|+-+|.+....++..+..+++.+...||.|+|
T Consensus 65 reikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~ce-hDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iH-- 141 (376)
T KOG0669|consen 65 REIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLVFDFCE-HDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIH-- 141 (376)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeeeHHHhh-hhHHHHhcCccccccHHHHHHHHHHHHHHHHHHH--
Confidence 57889999999999999988854 234689999997 5899999877677888999999999999999999
Q ss_pred CCCCCeeecCCCCcc-----------------------------cccccccccccCccccccC-CCcCccccchhhHHHH
Q 040540 523 HSSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLL 572 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil 572 (669)
+..|+|||.|... ..+..+-|..|.+||.+.+ +.|+.+.|||..|||+
T Consensus 142 --r~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCim 219 (376)
T KOG0669|consen 142 --RNKILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIM 219 (376)
T ss_pred --HhhHHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHH
Confidence 4579999998430 0111234889999998877 5599999999999999
Q ss_pred HHHHhCCCCCCcCCCC-CccHHHHHHHhC-CCCcccc--------cc-ccccchhhhhhhhHHH------HHHHHHHHhh
Q 040540 573 METFTRKRPTDEMFTG-EMSLRRWVKESL-PHRLSEV--------VD-TNLVREEQAFSAKMDC------LLSIMDLALD 635 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~-~~~l~~~~~~~~-~~~~~~~--------~~-~~~~~~~~~~~~~~~~------~~~~~~l~~~ 635 (669)
.||.||.+-+...... ..++..-+-..+ ++.+..+ +. +.+.... +....+. .+.+.+++.+
T Consensus 220 aeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~--~rkv~n~~kp~~kd~~a~dLle~ 297 (376)
T KOG0669|consen 220 AEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQ--KRKVKNRLKPYVKDDEALDLLEK 297 (376)
T ss_pred HHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcch--hhhhhhhcccccCChhHHHHHHH
Confidence 9999998776542211 111111110000 1111110 00 0000000 0001111 1256789999
Q ss_pred cccCCCCCCCCHHHHHH
Q 040540 636 CCMESPDKRMHMTDAAA 652 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~ 652 (669)
.+..||.+|+.+.+++.
T Consensus 298 ll~~DP~kR~~ad~aln 314 (376)
T KOG0669|consen 298 LLKLDPTKRIDADQALN 314 (376)
T ss_pred HhccCcccCcchHhhhc
Confidence 99999999999998875
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=169.43 Aligned_cols=148 Identities=30% Similarity=0.514 Sum_probs=119.4
Q ss_pred CChhhHHHHHHHHhhcCCCcccccCCCCCCCCCC-----CccceeeCCC--C--CCEEEEEcCCCCCcccccccccCCCC
Q 040540 6 DLTTDQSSLLAFKAHAFDYRSALANNWSISYPIC-----SWAGISCGSR--H--QRVTALNLSDMGLGGTIPLHFGNLSF 76 (669)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~l~~~w~~~~~~c-----~~~g~~c~~~--~--~~v~~L~ls~~~l~~~~~~~~~~l~~ 76 (669)
.+..|..||+.+|+++.++.. .+|+. ++| .|.|+.|... . ..|+.|+|++|++.|.+|..++.+++
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~---~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLR---FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred cCchHHHHHHHHHHhcCCccc---CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 466789999999998865432 24863 455 6999999532 1 24889999999999999999999999
Q ss_pred CCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCC-CCCCeeecc
Q 040540 77 LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNL-SRLEMLRAE 155 (669)
Q Consensus 77 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l~ 155 (669)
|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|++|+|++|+++|.+|..++.+ .++..+++.
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 9999999999999999889999999999999999999899999999999999999999988888877653 345555555
Q ss_pred ccc
Q 040540 156 FNI 158 (669)
Q Consensus 156 ~n~ 158 (669)
+|.
T Consensus 524 ~N~ 526 (623)
T PLN03150 524 DNA 526 (623)
T ss_pred CCc
Confidence 554
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-16 Score=140.34 Aligned_cols=198 Identities=19% Similarity=0.264 Sum_probs=139.3
Q ss_pred ccCchhhhhhcccc-ccccceecccccccc--ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVR-HRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~-h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+.+|+.++..++ ||||+++++...++. ...+|+||+.+.+...+.. .+...+..-++.++.+||.|+|
T Consensus 77 kKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly~----tl~d~dIryY~~elLkALdyCH--- 149 (338)
T KOG0668|consen 77 KKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLYP----TLTDYDIRYYIYELLKALDYCH--- 149 (338)
T ss_pred HHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhccccHHHHhh----hhchhhHHHHHHHHHHHHhHHH---
Confidence 45678999999997 999999999987754 4579999999887766653 3666777889999999999999
Q ss_pred CCCCeeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 524 SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
+.+|+|||+|+.. .....+.+..|..||.+.+ ..|+..-|+|||||++.+|+-
T Consensus 150 -S~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miF 228 (338)
T KOG0668|consen 150 -SMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF 228 (338)
T ss_pred -hcCcccccCCcceeeechhhceeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHh
Confidence 5689999999651 1223346778899998876 558999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHH------------Hh---CCCCccccccccccchhhhh--hh-hHHHHHHHHHHHhhcccC
Q 040540 578 RKRPTDEMFTGEMSLRRWVK------------ES---LPHRLSEVVDTNLVREEQAF--SA-KMDCLLSIMDLALDCCME 639 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~------------~~---~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~c~~~ 639 (669)
.+.||........+++.-++ .. ++.+...++..-....-.+| +. ..-..+++++++.+.+.-
T Consensus 229 rkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrY 308 (338)
T KOG0668|consen 229 RKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRY 308 (338)
T ss_pred ccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhh
Confidence 99999764443333333222 11 11111111111000000000 01 112346788999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
|..+|||++|++.
T Consensus 309 DHqeRlTakEam~ 321 (338)
T KOG0668|consen 309 DHQERLTAKEAMA 321 (338)
T ss_pred ccccccchHHHhc
Confidence 9999999999865
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-15 Score=143.20 Aligned_cols=152 Identities=29% Similarity=0.396 Sum_probs=128.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|++++++++++......++++||+++++|.+++......+++..+..++.+++++++++|..
T Consensus 36 ~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---- 111 (215)
T cd00180 36 EELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSN---- 111 (215)
T ss_pred HHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 4567889999999999999999999888888999999999999999976434688999999999999999999954
Q ss_pred CeeecCCCCccc--------------------------ccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++... .....+...|++||..... .++.++|+|++|++++|+
T Consensus 112 ~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l---- 187 (215)
T cd00180 112 GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL---- 187 (215)
T ss_pred CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH----
Confidence 799999874310 1112367789999988776 788999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
..+.+++.+|++.+|++||++.++++.
T Consensus 188 -----------------------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~ 214 (215)
T cd00180 188 -----------------------------------------------PELKDLIRKMLQKDPEKRPSAKEILEH 214 (215)
T ss_pred -----------------------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence 124688999999999999999999764
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-15 Score=152.10 Aligned_cols=132 Identities=21% Similarity=0.271 Sum_probs=112.3
Q ss_pred cCchhhhhhcccc---ccccceeccccccccccceeecc-CCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVR---HRNLIKIISSCSNPDFKALVLEF-MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~ey-~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
....|+.+|..+. |+||+++++++.++++.||++|- -++.+|+++|..+ ..+++.+..-|+.||+-|+++||.
T Consensus 612 tVp~EIqIla~l~~~sH~NIlKlLdfFEddd~yyl~te~hg~gIDLFd~IE~k-p~m~E~eAk~IFkQV~agi~hlh~-- 688 (772)
T KOG1152|consen 612 TVPSEIQILATLNKHSHENILKLLDFFEDDDYYYLETEVHGEGIDLFDFIEFK-PRMDEPEAKLIFKQVVAGIKHLHD-- 688 (772)
T ss_pred ccchhHHHHHHhhhcCccchhhhhheeecCCeeEEEecCCCCCcchhhhhhcc-CccchHHHHHHHHHHHhccccccc--
Confidence 3456899999887 99999999999999999999996 4778999999754 458999999999999999999994
Q ss_pred CCCCeeecCCCCcc-----------------------cccccccccccCccccccCCCcC-ccccchhhHHHHHHHHhCC
Q 040540 524 SSAPIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVS-AKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gvil~el~tg~ 579 (669)
-+|+|||+|+.. .--.++||..|.|||++.+.+|- ..-|||++||+||-++...
T Consensus 689 --~~ivhrdikdenvivd~~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivyke 766 (772)
T KOG1152|consen 689 --QGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKE 766 (772)
T ss_pred --cCceecccccccEEEecCCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEecc
Confidence 489999999651 11234699999999999998764 5689999999999999999
Q ss_pred CCCCc
Q 040540 580 RPTDE 584 (669)
Q Consensus 580 ~p~~~ 584 (669)
.||..
T Consensus 767 npyyn 771 (772)
T KOG1152|consen 767 NPYYN 771 (772)
T ss_pred CCCcC
Confidence 99853
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-15 Score=141.57 Aligned_cols=134 Identities=22% Similarity=0.249 Sum_probs=106.6
Q ss_pred ccccCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhh
Q 040540 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 445 ~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
..+.+.+|..++...+|.|++..++..+-+ .+.|++.|.|. .+|.+.|-+ ..+++-....-+..||.||++||
T Consensus 95 s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TELmQ-SDLHKIIVS-PQ~Ls~DHvKVFlYQILRGLKYL 172 (449)
T KOG0664|consen 95 SCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELMQ-SDLHKIIVS-PQALTPDHVKVFVYQILRGLKYL 172 (449)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHHHH-hhhhheecc-CCCCCcchhhhhHHHHHhhhHHH
Confidence 445677899999999999999988776543 34578889886 588888864 45677667777889999999999
Q ss_pred hcCCCCCCeeecCCCCcc--------------------------cccccccccccCccccccC-CCcCccccchhhHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLL 572 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil 572 (669)
|. .+|.|||+|+.. ..+..+-|-.|.|||++.+ +.|+.+.||||.|||.
T Consensus 173 Hs----A~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIF 248 (449)
T KOG0664|consen 173 HT----ANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIF 248 (449)
T ss_pred hh----cchhhccCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHH
Confidence 94 589999999641 1122245778999999988 4599999999999999
Q ss_pred HHHHhCCCCCCc
Q 040540 573 METFTRKRPTDE 584 (669)
Q Consensus 573 ~el~tg~~p~~~ 584 (669)
.|++.+++-|..
T Consensus 249 aELLgRrILFQA 260 (449)
T KOG0664|consen 249 AELLQRKILFQA 260 (449)
T ss_pred HHHHhhhhhhhc
Confidence 999999988765
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-14 Score=142.73 Aligned_cols=196 Identities=24% Similarity=0.302 Sum_probs=138.6
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
...|++++..+ .+.|++++.++....+.+.+|+||++.-...++.++ ++..+...+++...+||+++|+ .+
T Consensus 81 i~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~~H~~f~~l~~~----l~~~~i~~Yl~~ll~Al~~~h~----~G 152 (418)
T KOG1167|consen 81 ILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYFEHDRFRDLYRS----LSLAEIRWYLRNLLKALAHLHK----NG 152 (418)
T ss_pred HHHHHHHHHHhccchhhhcchhhhccCCeeEEEecccCccCHHHHHhc----CCHHHHHHHHHHHHHHhhhhhc----cC
Confidence 55788888877 489999999999999999999999999999998875 5677888899999999999995 58
Q ss_pred eeecCCCCc----------------------------------------------------------------------c
Q 040540 528 IIHCEGEDS----------------------------------------------------------------------V 537 (669)
Q Consensus 528 i~h~d~~~~----------------------------------------------------------------------~ 537 (669)
|||||+|++ .
T Consensus 153 IvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~ 232 (418)
T KOG1167|consen 153 IVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPS 232 (418)
T ss_pred ccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccc
Confidence 999999932 0
Q ss_pred cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHH----------HhCCCC--c
Q 040540 538 TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVK----------ESLPHR--L 604 (669)
Q Consensus 538 ~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~----------~~~~~~--~ 604 (669)
......||+||.|||++.. ..-+.+.||||.|||++-+++++.||.....+...+.+-+. ...+.+ +
T Consensus 233 ~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l 312 (418)
T KOG1167|consen 233 ERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILL 312 (418)
T ss_pred eecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceee
Confidence 0111249999999999876 34678999999999999999999999654333332222110 001111 0
Q ss_pred cc---------------ccc-ccccchhh---hhhhhHH-HHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 605 SE---------------VVD-TNLVREEQ---AFSAKMD-CLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 605 ~~---------------~~~-~~~~~~~~---~~~~~~~-~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.+ .++ ..+..... ....+.+ .+..+.++..+|+..||.+|-|++|+++
T Consensus 313 ~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALk 380 (418)
T KOG1167|consen 313 WQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALK 380 (418)
T ss_pred eccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhc
Confidence 00 000 00000000 0001112 3347889999999999999999999986
|
|
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-14 Score=138.71 Aligned_cols=134 Identities=26% Similarity=0.336 Sum_probs=112.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|+|++++++.+......++++||+++++|.+++......+++.....++.++++++.|+|..
T Consensus 42 ~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---- 117 (225)
T smart00221 42 EEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSL---- 117 (225)
T ss_pred HHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 4566788899999999999999999888889999999999999999976433378899999999999999999953
Q ss_pred CeeecCCCCcc---------------------cc-----cccccccccCccccc-cCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------TQ-----TTTMATIGYMAPEYG-SEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------~~-----~~~~gt~~y~aPE~~-~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++.. .. ....++..|++||.. ....++.++|||+||++++||++|+
T Consensus 118 ~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~ 197 (225)
T smart00221 118 GIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGP 197 (225)
T ss_pred CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCC
Confidence 89999987320 00 223477789999998 5566788999999999999999999
Q ss_pred CCCCc
Q 040540 580 RPTDE 584 (669)
Q Consensus 580 ~p~~~ 584 (669)
.||..
T Consensus 198 ~pf~~ 202 (225)
T smart00221 198 EPFSG 202 (225)
T ss_pred CCccc
Confidence 99965
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-14 Score=132.04 Aligned_cols=194 Identities=17% Similarity=0.211 Sum_probs=133.6
Q ss_pred ccccCchhhhhhccc-cccccceecc-ccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 445 AFRSFDSECEVLRNV-RHRNLIKIIS-SCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 445 ~~~~~~~e~~~l~~l-~h~niv~l~~-~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
..++|.+|...--.+ .|.||+.-+. .++..+....++||+|.|+|..-+... .+.+....+++.|++.|+.|+|
T Consensus 63 t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~~--GigE~~~K~v~~ql~SAi~fMH-- 138 (378)
T KOG1345|consen 63 TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEAA--GIGEANTKKVFAQLLSAIEFMH-- 138 (378)
T ss_pred hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCcc--cccHHHHHHHHHHHHHHHHHhh--
Confidence 346777777665444 4889988765 456666777899999999999998653 3677778889999999999999
Q ss_pred CCCCCeeecCCCCc----------------cccccccc--------ccccCccccccC---C--CcCccccchhhHHHHH
Q 040540 523 HSSAPIIHCEGEDS----------------VTQTTTMA--------TIGYMAPEYGSE---G--IVSAKCDVYSYGVLLM 573 (669)
Q Consensus 523 ~~~~~i~h~d~~~~----------------~~~~~~~g--------t~~y~aPE~~~~---~--~~~~~~Dv~s~Gvil~ 573 (669)
+..++|||+|.. ...+...| +-.|.|||.... + ...+..|||.|||++|
T Consensus 139 --sknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f 216 (378)
T KOG1345|consen 139 --SKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFF 216 (378)
T ss_pred --ccchhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeee
Confidence 458999999943 11222233 346889997643 2 2556899999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
..+||+.||...........+|.+-.-... +.+... .......+..+..+-+.++|.+|....++.++
T Consensus 217 ~cltG~~PWQka~~~d~~Y~~~~~w~~rk~------~~~P~~------F~~fs~~a~r~Fkk~lt~~~~drcki~~~kk~ 284 (378)
T KOG1345|consen 217 YCLTGKFPWQKASIMDKPYWEWEQWLKRKN------PALPKK------FNPFSEKALRLFKKSLTPRFKDRCKIWTAKKM 284 (378)
T ss_pred eeecCCCcchhhhccCchHHHHHHHhcccC------ccCchh------hcccCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 999999999864444445555554322111 111110 01123345677778889999999777777766
Q ss_pred HHH
Q 040540 654 LKK 656 (669)
Q Consensus 654 l~~ 656 (669)
-..
T Consensus 285 rk~ 287 (378)
T KOG1345|consen 285 RKC 287 (378)
T ss_pred HHH
Confidence 443
|
|
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=119.53 Aligned_cols=198 Identities=18% Similarity=0.166 Sum_probs=134.3
Q ss_pred chhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
.+|+..++.++|.|+|++++..-.+....+|+|||+ .+|..+..+-...++.....+++.|..+|+.|+|. ..+.
T Consensus 49 lreicllkelkhknivrl~dvlhsdkkltlvfe~cd-qdlkkyfdslng~~d~~~~rsfmlqllrgl~fchs----hnvl 123 (292)
T KOG0662|consen 49 LREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCD-QDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHS----HNVL 123 (292)
T ss_pred HHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhh-HHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhh----hhhh
Confidence 368889999999999999999888888899999997 58888877666678888888999999999999994 4799
Q ss_pred ecCCCCcc-------------------------cccccccccccCccccccCCC-cCccccchhhHHHHHHHHhCCCCCC
Q 040540 530 HCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 530 h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
|||+|+.. -....+-|..|.+|.++.+.+ |+...|+||.|||+.|+.....|..
T Consensus 124 hrdlkpqnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplf 203 (292)
T KOG0662|consen 124 HRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF 203 (292)
T ss_pred hccCCcceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCC
Confidence 99999641 011123578899999988865 9999999999999999987555543
Q ss_pred cCCCCCccHHHHHHH--hC-CCCccc---cccccccchhhhhhhhH----HHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 584 EMFTGEMSLRRWVKE--SL-PHRLSE---VVDTNLVREEQAFSAKM----DCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~--~~-~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
....-..++.+..+. .. .+.+.. .-|.....-.+....+. .....-.++..+.+.-+|.+|-+++++++
T Consensus 204 pg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalq 282 (292)
T KOG0662|consen 204 PGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQ 282 (292)
T ss_pred CCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhc
Confidence 211111223222221 11 111111 11110000000011122 22234567778888889999999998765
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-13 Score=133.87 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=62.5
Q ss_pred hhhhhhcccc--------ccccceecccccc----ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhh
Q 040540 451 SECEVLRNVR--------HRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALE 517 (669)
Q Consensus 451 ~e~~~l~~l~--------h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~ 517 (669)
.|+.++..++ ..+||++++.+.. ...+++|+||.. -+|-.+|... -.-++.....+|+.||+.||.
T Consensus 123 DEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvLG-dnLLklI~~s~YrGlpl~~VK~I~~qvL~GLd 201 (590)
T KOG1290|consen 123 DEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVLG-DNLLKLIKYSNYRGLPLSCVKEICRQVLTGLD 201 (590)
T ss_pred HHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhhh-hHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence 4666666553 3478999998854 567899999984 5888888753 235888889999999999999
Q ss_pred hhhcCCCCCCeeecCCC
Q 040540 518 YLRHGHSSAPIIHCEGE 534 (669)
Q Consensus 518 ~lh~~~~~~~i~h~d~~ 534 (669)
|||.. .+|||-|+|
T Consensus 202 YLH~e---cgIIHTDlK 215 (590)
T KOG1290|consen 202 YLHRE---CGIIHTDLK 215 (590)
T ss_pred HHHHh---cCccccCCC
Confidence 99965 589998877
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-14 Score=151.73 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=137.6
Q ss_pred CchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+..|..+-..++|+|++..+..+.......-+||||++ +|+..+.+. ..+...++.-++.|+.+|++|+|. .++
T Consensus 368 i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE~~~~-Dlf~~~~~~-~~~~~~e~~c~fKqL~~Gv~y~h~----~Gi 441 (601)
T KOG0590|consen 368 ITSEFCIGSSLSHPNIIETLDIVQEIDGILQSMEYCPY-DLFSLVMSN-GKLTPLEADCFFKQLLRGVKYLHS----MGL 441 (601)
T ss_pred hhhheeecccccCCchhhhHHHHhhcccchhhhhcccH-HHHHHHhcc-cccchhhhhHHHHHHHHHHHHHHh----cCc
Confidence 44566677788999998887777665555555999998 999999853 357778888899999999999995 489
Q ss_pred eecCCCCc-----------------------------ccccccccccccCccccccCCCcCc-cccchhhHHHHHHHHhC
Q 040540 529 IHCEGEDS-----------------------------VTQTTTMATIGYMAPEYGSEGIVSA-KCDVYSYGVLLMETFTR 578 (669)
Q Consensus 529 ~h~d~~~~-----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~-~~Dv~s~Gvil~el~tg 578 (669)
.|||+|.. ......+|+-.|+|||++.+..|.+ .+||||.||++..|++|
T Consensus 442 ahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~ 521 (601)
T KOG0590|consen 442 AHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILG 521 (601)
T ss_pred eeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecC
Confidence 99999843 1123346899999999999988886 58999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||......+..+.+. ...... .+..+ ......+.+.....++.++++.||.+|-|+++|++
T Consensus 522 ~~~Wk~a~~~~~~~~~~----~~~~~~-----~~~~~--~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~ 584 (601)
T KOG0590|consen 522 RFPWKVAKKSDNSFKTN----NYSDQR-----NIFEG--PNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN 584 (601)
T ss_pred CCccccccccccchhhh----cccccc-----ccccC--hHHHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence 99997644333221000 000000 01111 11224455667789999999999999999999986
|
|
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-13 Score=136.94 Aligned_cols=130 Identities=19% Similarity=0.166 Sum_probs=104.6
Q ss_pred chhhhhhcccc------ccccceeccccccccccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhc
Q 040540 450 DSECEVLRNVR------HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 450 ~~e~~~l~~l~------h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
..|++++.++. .-++++++..|...+..|||+|-.. .+|.++|+..+ ..+.......++.|+.-||..|.
T Consensus 476 l~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK- 553 (752)
T KOG0670|consen 476 LKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLK- 553 (752)
T ss_pred hHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHH-
Confidence 35777887774 3478888999999999999999765 69999998643 34667778889999999999997
Q ss_pred CCCCCCeeecCCCCccc---------------ccc---------cccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSVT---------------QTT---------TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~~---------------~~~---------~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
..+|+|+|+|+... ... ..-+..|.|||++.+-.|+..-|+||.||+|||+-|
T Consensus 554 ---~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYt 630 (752)
T KOG0670|consen 554 ---KCGVLHADIKPDNILVNESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYT 630 (752)
T ss_pred ---hcCeeecccCccceEeccCcceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeec
Confidence 35899999996411 011 112457999999999999999999999999999999
Q ss_pred CCCCCCc
Q 040540 578 RKRPTDE 584 (669)
Q Consensus 578 g~~p~~~ 584 (669)
|++-|.+
T Consensus 631 GkIlFpG 637 (752)
T KOG0670|consen 631 GKILFPG 637 (752)
T ss_pred cceecCC
Confidence 9998865
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-14 Score=145.90 Aligned_cols=200 Identities=28% Similarity=0.420 Sum_probs=145.5
Q ss_pred EEEcCCCCCcccccc-cccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 55 ALNLSDMGLGGTIPL-HFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
.|.|++-.+....-. .-..+..-...||+.|++. .+|..+..+..|..|.|..|.+. .+|..+.+|..|++|||+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence 355555555433211 1245666777888888887 77888888888888888888887 77888888888888888888
Q ss_pred CccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCc
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPP 213 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 213 (669)
+++ .+|..++.|+ |+.|-+++|+++ .+|..++.+..|..|+.+.|++. .+|..++.+.+|+.|.++.|.+.. +|.
T Consensus 132 qlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~ 206 (722)
T KOG0532|consen 132 QLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPE 206 (722)
T ss_pred hhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCH
Confidence 887 6777777776 788888888775 67777777778888888888886 566677888888888888887764 466
Q ss_pred cccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCcccc
Q 040540 214 TIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSIT 265 (669)
Q Consensus 214 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 265 (669)
.+..| .|..||++.|+++ .+|..|. .|+.|++|-|.+|-+. ..|..++
T Consensus 207 El~~L-pLi~lDfScNkis-~iPv~fr-~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSCNKIS-YLPVDFR-KMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred HHhCC-ceeeeecccCcee-ecchhhh-hhhhheeeeeccCCCC-CChHHHH
Confidence 66644 3677777777776 6777666 5777777777777765 3444443
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-12 Score=122.25 Aligned_cols=172 Identities=20% Similarity=0.248 Sum_probs=115.0
Q ss_pred ccccccceecccccc---------------------------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHh
Q 040540 459 VRHRNLIKIISSCSN---------------------------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511 (669)
Q Consensus 459 l~h~niv~l~~~~~~---------------------------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~ 511 (669)
.+|||||++.+++.+ +...|+||.-.+. +|.+++-.. ..+...+.-|..|
T Consensus 273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~--~~s~r~~~~~laQ 349 (598)
T KOG4158|consen 273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTR--HRSYRTGRVILAQ 349 (598)
T ss_pred CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcC--CCchHHHHHHHHH
Confidence 468888887665432 2345677776653 788877542 2344445567789
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCcc-----------------------------------cccccccccccCccccccC
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSV-----------------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~-----------------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
..+|+.|||. .+|.|||+|... ......|...-||||+...
T Consensus 350 lLEav~hL~~----hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta 425 (598)
T KOG4158|consen 350 LLEAVTHLHK----HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATA 425 (598)
T ss_pred HHHHHHHHHH----ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhc
Confidence 9999999994 479999999430 0112246777899998754
Q ss_pred CC------cCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHH
Q 040540 557 GI------VSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIM 630 (669)
Q Consensus 557 ~~------~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (669)
.. --.|+|.|+.|.+.||+++...||........+...+-...+| . .++.++..+.
T Consensus 426 ~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qLP---------a---------lp~~vpp~~r 487 (598)
T KOG4158|consen 426 VPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQLP---------A---------LPSRVPPVAR 487 (598)
T ss_pred CCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhhhCC---------C---------CcccCChHHH
Confidence 22 1259999999999999999999997622212222222222221 1 1334556778
Q ss_pred HHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 631 DLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 631 ~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+++...+++||++||+..-+.+.|+
T Consensus 488 qlV~~lL~r~pskRvsp~iAANvl~ 512 (598)
T KOG4158|consen 488 QLVFDLLKRDPSKRVSPNIAANVLN 512 (598)
T ss_pred HHHHHHhcCCccccCCccHHHhHHH
Confidence 9999999999999999877766654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-13 Score=138.50 Aligned_cols=175 Identities=27% Similarity=0.392 Sum_probs=120.4
Q ss_pred CCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEE
Q 040540 97 QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNL 176 (669)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L 176 (669)
.+..-...||+.|++. .+|..+..+..|+.|.|..|.+. .+|..++++..|.+++++.|+++ .+|..++.|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 4555667899999998 78999999999999999999986 67778888888888888888776 5666666654 6777
Q ss_pred EcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcc
Q 040540 177 GLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL 256 (669)
Q Consensus 177 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l 256 (669)
.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|++..|.+. .+|..+. .| .|..||+|.|++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SL-PLIRLDFSCNKI 223 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CC-ceeeeecccCce
Confidence 77777775 66666776677777777777766 34566666666666666666664 4555554 22 345556665555
Q ss_pred cccCCccccCCCCCCEEeCCCCCcc
Q 040540 257 IGKIPNSITNATKLIGLDLGFNSFS 281 (669)
Q Consensus 257 ~~~~p~~~~~l~~L~~L~ls~n~l~ 281 (669)
. .+|-.|.+|..|++|-|.+|.+.
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC
Confidence 4 44555555555555555555554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-11 Score=137.87 Aligned_cols=107 Identities=28% Similarity=0.592 Sum_probs=78.4
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecc
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAE 155 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (669)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..+++|++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36777888888888888888888888888888888887788778888888888888888877777777777777777777
Q ss_pred cccccccCCcccCCC-CCCCEEEcccCC
Q 040540 156 FNIIGGTIPSRIGNL-RKLVNLGLWSCN 182 (669)
Q Consensus 156 ~n~l~~~~p~~~~~L-~~L~~L~l~~n~ 182 (669)
+|.++|.+|..++.+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 777777777666543 244455555444
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-11 Score=131.64 Aligned_cols=199 Identities=34% Similarity=0.504 Sum_probs=147.8
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCc-ccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLS-KLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 79 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
.|+++.|.+.. ....+..++.++.|++.+|.+. .+|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 57777777642 2334556677888888888887 5666667774 8888888888886 56667788888888888888
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccch
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (669)
++. .+|...+.+.+|+.|++++|++. .+|..+.....|++|.+++|.+. ..+..+.++.++..+.+.+|++. .++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 886 55555557888888888888887 56665566667888888888533 35667788888888888888875 3344
Q ss_pred hhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccc
Q 040540 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNT 287 (669)
Q Consensus 238 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~ 287 (669)
.+. .+.++++|++++|.++...+ +....+++.|++++|.+....|..
T Consensus 250 ~~~-~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIG-NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhc-cccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 444 57789999999988864433 788889999999999887665544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-11 Score=128.93 Aligned_cols=196 Identities=36% Similarity=0.470 Sum_probs=149.0
Q ss_pred CEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCC-CCCeeecccccccccCCcccCCCCCCCEEEccc
Q 040540 102 RVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLS-RLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWS 180 (669)
Q Consensus 102 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~ 180 (669)
..+++..|.+.. .+..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..+..+++|+.|+++.
T Consensus 96 ~~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 367888888742 3344566688899999999987 6777777775 8999999999886 5556788899999999999
Q ss_pred CCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC
Q 040540 181 CNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI 260 (669)
Q Consensus 181 n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~ 260 (669)
|++. .+|...+.+++|+.|++++|++.. +|..+.....|+++.+++|.+. .++..+. .+.++..+.+.+|++.. .
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLED-L 247 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceeee-c
Confidence 9987 566655578889999999999884 5666666777889999988533 3454444 57788888888887653 3
Q ss_pred CccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccC
Q 040540 261 PNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTE 307 (669)
Q Consensus 261 p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 307 (669)
+..+..++.++.|++++|.++...+ ++.+.+++.|+++.|.+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 6677888889999999998874333 78888899999988887654
|
|
| >KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-11 Score=125.90 Aligned_cols=148 Identities=22% Similarity=0.327 Sum_probs=103.7
Q ss_pred ccccceeeccCCCCChHHhhhcC--CCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCc---------------
Q 040540 474 PDFKALVLEFMPNGSLEKWLYSH--NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDS--------------- 536 (669)
Q Consensus 474 ~~~~~lv~ey~~~g~L~~~l~~~--~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~--------------- 536 (669)
..+.+|.|++|...+|-+||..+ ....++.....++.+++.|++| ++.+|+|.|+.
T Consensus 328 ~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y-------k~~ihrdlkp~nif~~~d~q~kIgDF 400 (516)
T KOG1033|consen 328 KVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY-------KGLIHRDLKPSNIFFSDDDQLKIGDF 400 (516)
T ss_pred ccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh-------ccchhhhccccccccccchhhhhhhh
Confidence 34567899999999999999642 3356777888999999999998 35789888732
Q ss_pred ----------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHh
Q 040540 537 ----------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKES 599 (669)
Q Consensus 537 ----------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~ 599 (669)
+..+..+||..||+||.+.+..|+.|+||||+|++++|+++ -..++..... +
T Consensus 401 gl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~t----~------- 469 (516)
T KOG1033|consen 401 GLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIAT----L------- 469 (516)
T ss_pred hheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHHh----h-------
Confidence 12344579999999999999999999999999999999988 4444332100 0
Q ss_pred CCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 600 LPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
..-...++++.... +. +.-.++..+++...|.+||++.++
T Consensus 470 -~d~r~g~ip~~~~~---------d~-p~e~~ll~~lls~~p~~RP~~~~~ 509 (516)
T KOG1033|consen 470 -TDIRDGIIPPEFLQ---------DY-PEEYTLLQQLLSPSPEERPSAIEV 509 (516)
T ss_pred -hhhhcCCCChHHhh---------cC-cHHHHHHHHhcCCCcccCchHHHH
Confidence 00001122222211 11 123578899999999999954443
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=112.06 Aligned_cols=194 Identities=25% Similarity=0.290 Sum_probs=138.3
Q ss_pred ccCchhhhhhcccccc-ccceeccccccccccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHR-NLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~-niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
..+..|......+.|+ +++++.+.+......+++++|+.++++.+++.... ..+.......++.+++.+++|+|..
T Consensus 42 ~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~- 120 (384)
T COG0515 42 ERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK- 120 (384)
T ss_pred HHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence 4566788888899888 79999988866666789999999999998877543 2688888999999999999999954
Q ss_pred CCCCeeecCCCCc-------------------------c-------cccccccccccCccccccC---CCcCccccchhh
Q 040540 524 SSAPIIHCEGEDS-------------------------V-------TQTTTMATIGYMAPEYGSE---GIVSAKCDVYSY 568 (669)
Q Consensus 524 ~~~~i~h~d~~~~-------------------------~-------~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~ 568 (669)
+++|||+|+. . ......||..|+|||.... ..+....|+||+
T Consensus 121 ---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~ 197 (384)
T COG0515 121 ---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSL 197 (384)
T ss_pred ---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHH
Confidence 5999999832 0 1133468999999999887 578899999999
Q ss_pred HHHHHHHHhCCCCCCcCCCC--CccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 569 GVLLMETFTRKRPTDEMFTG--EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
|++++++++|..|+...... .......+.............+.. .......+.+++.+|+..+|..|.+
T Consensus 198 g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~r~~ 268 (384)
T COG0515 198 GITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSN---------PELISKAASDLLKKLLAKDPKNRLS 268 (384)
T ss_pred HHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccc---------cchhhHHHHHHHHHHHhcCchhcCC
Confidence 99999999999996543221 112222222211110000000000 0122345678899999999999998
Q ss_pred HHHHHHH
Q 040540 647 MTDAAAK 653 (669)
Q Consensus 647 ~~~v~~~ 653 (669)
+.+....
T Consensus 269 ~~~~~~~ 275 (384)
T COG0515 269 SSSDLSH 275 (384)
T ss_pred HHHHhhc
Confidence 8877654
|
|
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-10 Score=107.77 Aligned_cols=174 Identities=21% Similarity=0.267 Sum_probs=118.6
Q ss_pred hhccccccccceecccccccc-----ccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 455 VLRNVRHRNLIKIISSCSNPD-----FKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 455 ~l~~l~h~niv~l~~~~~~~~-----~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+-.+.|.|+|+++.++.+.. ...++.|||..|++.++|++- ...+......++.-||..||.|||. +.+
T Consensus 120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs--~~P 197 (458)
T KOG1266|consen 120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS--CDP 197 (458)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc--cCC
Confidence 355667999999998876533 345788999999999999862 2345666677889999999999995 589
Q ss_pred CeeecCCCC------------------c-----------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 527 PIIHCEGED------------------S-----------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 527 ~i~h~d~~~------------------~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
+|+|.+..= . .......|.++|.|||+......+.++|||+||....||..
T Consensus 198 piihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemai 277 (458)
T KOG1266|consen 198 PIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAI 277 (458)
T ss_pred ccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHH
Confidence 999976430 0 00111236789999998887778889999999999999998
Q ss_pred CCCC-CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 578 RKRP-TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 578 g~~p-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
|..- ........ . .+.+...+ -.+... .=.+++.+|++..|..||+|++.+.-
T Consensus 278 lEiq~tnseS~~~---~-------ee~ia~~i-~~len~------------lqr~~i~kcl~~eP~~rp~ar~llfH 331 (458)
T KOG1266|consen 278 LEIQSTNSESKVE---V-------EENIANVI-IGLENG------------LQRGSITKCLEGEPNGRPDARLLLFH 331 (458)
T ss_pred heeccCCCcceee---h-------hhhhhhhe-eeccCc------------cccCcCcccccCCCCCCcchhhhhcC
Confidence 8764 22211000 0 00011100 000000 01356789999999999999988653
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-10 Score=119.10 Aligned_cols=167 Identities=22% Similarity=0.238 Sum_probs=119.5
Q ss_pred chhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 450 DSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 450 ~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
..|..++..++ ||.++++...++.+...+++++|.-+|.++..+.+... ........+...++-|++++|. .++
T Consensus 44 ~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~~~~-f~~~~~~~~~aelaLald~lh~----l~i 118 (612)
T KOG0603|consen 44 KQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSKEVM-FDELDVAFYLAELALALDHLHK----LGI 118 (612)
T ss_pred ccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcccchhhhccccCCc-hHHHHHHHHHHHHHHHHhhcch----hHH
Confidence 34566677776 99999999999999999999999999999998875433 4444444566677888999984 478
Q ss_pred eecCCCCc---------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCC
Q 040540 529 IHCEGEDS---------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFT 587 (669)
Q Consensus 529 ~h~d~~~~---------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~ 587 (669)
+++|.|.. ......+||..|||||+.. .+...+|.|||||+++||+||..||..
T Consensus 119 iyrd~k~enilld~~Ghi~~tdfglske~v~~~~~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~--- 193 (612)
T KOG0603|consen 119 AYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG--- 193 (612)
T ss_pred HHhcccccceeecccCccccCCchhhhHhHhhhhcccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch---
Confidence 88888632 1112226899999999998 568899999999999999999999865
Q ss_pred CCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 588 GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 588 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
..+..-.+.. ...+......+.+++.+...++|..|--.
T Consensus 194 --~~~~~Il~~~-------------------~~~p~~l~~~a~~~~~~l~~r~p~nrLg~ 232 (612)
T KOG0603|consen 194 --DTMKRILKAE-------------------LEMPRELSAEARSLFRQLFKRNPENRLGA 232 (612)
T ss_pred --HHHHHHhhhc-------------------cCCchhhhHHHHHHHHHHHhhCHHHHhcc
Confidence 1111111100 11234445556677777778888777644
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-10 Score=125.19 Aligned_cols=186 Identities=19% Similarity=0.207 Sum_probs=123.5
Q ss_pred cccCchhhhh--hccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 446 FRSFDSECEV--LRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 446 ~~~~~~e~~~--l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.++|.+.+.. ..-+++||++++...-..+...|+|-+|.. -+|+|.|.- +..+...+..-|+.|+.+|+..+|.
T Consensus 63 L~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqyvk-hnLyDRlST-RPFL~~iEKkWiaFQLL~al~qcH~-- 138 (1431)
T KOG1240|consen 63 LRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQYVK-HNLYDRLST-RPFLVLIEKKWIAFQLLKALSQCHK-- 138 (1431)
T ss_pred chHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHHHh-hhhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3444443333 445689999999888777788889999987 499999964 4568888889999999999999995
Q ss_pred CCCCeeecCCCCcc-----------------c--------c---ccccc----ccccCccccccCC----------C-cC
Q 040540 524 SSAPIIHCEGEDSV-----------------T--------Q---TTTMA----TIGYMAPEYGSEG----------I-VS 560 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-----------------~--------~---~~~~g----t~~y~aPE~~~~~----------~-~~ 560 (669)
.+|+|+|+|... + + +.+.- -.-|.|||-+... . .+
T Consensus 139 --~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~ 216 (1431)
T KOG1240|consen 139 --LGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLT 216 (1431)
T ss_pred --cCccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccC
Confidence 489999999430 0 0 00111 1349999965331 1 46
Q ss_pred ccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 561 AKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 561 ~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
++.||||.||+++|+++ |++||.-. ++..+-+.. ..+++..- ..-+.....+++..|++.
T Consensus 217 paMDIFS~GCViaELf~Eg~PlF~LS-----QL~aYr~~~-------~~~~e~~L-------e~Ied~~~Rnlil~Mi~r 277 (1431)
T KOG1240|consen 217 PAMDIFSAGCVIAELFLEGRPLFTLS-----QLLAYRSGN-------ADDPEQLL-------EKIEDVSLRNLILSMIQR 277 (1431)
T ss_pred hhhhhhhhhHHHHHHHhcCCCcccHH-----HHHhHhccC-------ccCHHHHH-------HhCcCccHHHHHHHHHcc
Confidence 78899999999999987 57776420 111110000 00000000 000111457889999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q 040540 640 SPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 640 ~P~~Rps~~~v~~~l~~ 656 (669)
||++|-++++.++.=++
T Consensus 278 dPs~RlSAedyL~~yrG 294 (1431)
T KOG1240|consen 278 DPSKRLSAEDYLQKYRG 294 (1431)
T ss_pred CchhccCHHHHHHhhhc
Confidence 99999999999987443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-09 Score=122.28 Aligned_cols=129 Identities=26% Similarity=0.228 Sum_probs=86.7
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCc--CcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENN--FHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 128 (669)
..+++..+-++.+.... .+. ..+.|++|-+..|. +.......|..++.|++|||++|.--+.+|+.++.|.+||+|
T Consensus 523 ~~~rr~s~~~~~~~~~~-~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA-GSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhcc-CCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 34566666666554222 221 22357778777775 443333446778888888888877666788888888888888
Q ss_pred cccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCC
Q 040540 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN 182 (669)
Q Consensus 129 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~ 182 (669)
+|+++.++ .+|..+.+|++|.+|++..+.....+|..+..|.+|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88888877 677778888888888777766555556666667777777665443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-10 Score=101.43 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=8.4
Q ss_pred CCCEEeCCCCcCcccCCcccC-CCCCCCEEEccCCcCCccCCccccCCcccccccccccCcc
Q 040540 76 FLVSLDISENNFHGHLPKELG-QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
.+++|+|.+|.|+. + +.++ .+.+|+.|+|++|.+.. ++ .+..+++|++|++++|+++
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC
Confidence 34444444444432 1 1222 23444444444444442 11 2333444444444444444
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-09 Score=121.88 Aligned_cols=178 Identities=24% Similarity=0.326 Sum_probs=121.2
Q ss_pred CCEEEEEcCCCC--CcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccc
Q 040540 51 QRVTALNLSDMG--LGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128 (669)
Q Consensus 51 ~~v~~L~ls~~~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 128 (669)
..++.|=+.+|. +....+..|..++.|++|||++|.--+.+|..++.|.+||+|+|++..++ .+|..+++|.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 457888888886 44333344788999999999999877899999999999999999999998 899999999999999
Q ss_pred cccccCccccCCcccCCCCCCCeeeccccc--ccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCC----EEEc
Q 040540 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNI--IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK----NLDL 202 (669)
Q Consensus 129 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~l 202 (669)
|+..+.....+|.....|++|++|.+.... .+...-..+.+|.+|+.+....... .+-..+..+++|. .+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence 999988776778888889999999986543 2222333445555565555533332 0111112222222 2222
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcccCCCc
Q 040540 203 ADNKLSGLIPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 203 ~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
.++.. ...+..+..+.+|+.|.+.++..+
T Consensus 702 ~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 702 EGCSK-RTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred ccccc-ceeecccccccCcceEEEEcCCCc
Confidence 22121 123445566667777776666553
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-10 Score=113.00 Aligned_cols=209 Identities=23% Similarity=0.270 Sum_probs=100.0
Q ss_pred CCCCCCEEeCCCCcCcccCC--cccCCCCCCCEEEccCCcCCccCC--ccccCCcccccccccccCccccCCcccCCCCC
Q 040540 73 NLSFLVSLDISENNFHGHLP--KELGQLRRLRVMSLAYNKLSGSFP--SWIGVLSKLRILRLDYNNFTGPIPNSLFNLSR 148 (669)
Q Consensus 73 ~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 148 (669)
++..|+...|.+..+.. .+ .....+++++.|||+.|-+....| .....|++|+.|+|+.|++.......
T Consensus 119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~------ 191 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN------ 191 (505)
T ss_pred hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc------
Confidence 45555666666555431 22 234456666666666665543222 23345666666666666654211110
Q ss_pred CCeeecccccccccCCcccCCCCCCCEEEcccCCCccc-CCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 040540 149 LEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ-IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227 (669)
Q Consensus 149 L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 227 (669)
.-..+.+|+.|.|+.|.++-. +-.....+++|+.|+|..|..-.........++.|+.|||+
T Consensus 192 -----------------~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 192 -----------------TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred -----------------chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 011234555555555555421 11112334555555555554222222233344555555555
Q ss_pred cCCCccccc--hhhhccCCCCCeeecccCcccccC-Ccc-----ccCCCCCCEEeCCCCCccccC-ccccCCCCCCCEEE
Q 040540 228 SNQLSGRLP--STIGHSLRNIEYLALSTNNLIGKI-PNS-----ITNATKLIGLDLGFNSFSGHI-PNTFGNLRHLSVLN 298 (669)
Q Consensus 228 ~n~l~~~~p--~~~~~~l~~L~~L~ls~n~l~~~~-p~~-----~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~ 298 (669)
+|.+- .++ ...+ .++.|..|+++.+.+.... |+. ....++|++|+++.|.+...- -..+..+++|+.|.
T Consensus 255 ~N~li-~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 255 NNNLI-DFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred CCccc-ccccccccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 55543 122 1111 3555555555555543221 111 133466777777777774321 12344556666677
Q ss_pred ccCCccccC
Q 040540 299 VMMNNLTTE 307 (669)
Q Consensus 299 l~~N~l~~~ 307 (669)
...|.+...
T Consensus 333 ~~~n~ln~e 341 (505)
T KOG3207|consen 333 ITLNYLNKE 341 (505)
T ss_pred ccccccccc
Confidence 666777654
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.5e-10 Score=105.52 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=51.5
Q ss_pred CCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCee
Q 040540 170 LRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249 (669)
Q Consensus 170 L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 249 (669)
-..|+++||++|.++ .+-.++.-+++++.|++|.|.+... ..+..+++|+.||+++|.++ .+..+ ...+.++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhh-HhhhcCEeee
Confidence 345555566666554 4444455555666666666665532 22455555566666666554 22211 1235556666
Q ss_pred ecccCcccccCCccccCCCCCCEEeCCCCCc
Q 040540 250 ALSTNNLIGKIPNSITNATKLIGLDLGFNSF 280 (669)
Q Consensus 250 ~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l 280 (669)
.|+.|.+.. -..+..+-+|..||+++|++
T Consensus 358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred ehhhhhHhh--hhhhHhhhhheeccccccch
Confidence 666555431 12233344444455554444
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-09 Score=119.98 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=80.4
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCc----------------------------------------ccccccccccccCccc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDS----------------------------------------VTQTTTMATIGYMAPE 552 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~----------------------------------------~~~~~~~gt~~y~aPE 552 (669)
+.+++|+|+ .+|+|||.|+. ......+||+.|.|||
T Consensus 153 vla~Eylh~----ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPe 228 (1205)
T KOG0606|consen 153 VLAVEYLHS----YGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPE 228 (1205)
T ss_pred hHHhHhhcc----CCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChh
Confidence 678999994 58999998843 1122336999999999
Q ss_pred cccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHH
Q 040540 553 YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDL 632 (669)
Q Consensus 553 ~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 632 (669)
++....|+..+|+|++|+|+||.+.|+.||+....++. +...+...+. +.+ .......++.++
T Consensus 229 VilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeel-fg~visd~i~--wpE--------------~dea~p~Ea~dl 291 (1205)
T KOG0606|consen 229 VILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEEL-FGQVISDDIE--WPE--------------EDEALPPEAQDL 291 (1205)
T ss_pred hhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHH-Hhhhhhhhcc--ccc--------------cCcCCCHHHHHH
Confidence 99999999999999999999999999999986422211 1222211110 000 011233467899
Q ss_pred HhhcccCCCCCCCC
Q 040540 633 ALDCCMESPDKRMH 646 (669)
Q Consensus 633 ~~~c~~~~P~~Rps 646 (669)
+.+.+..+|.+|--
T Consensus 292 i~~LL~qnp~~Rlg 305 (1205)
T KOG0606|consen 292 IEQLLRQNPLCRLG 305 (1205)
T ss_pred HHHHHHhChHhhcc
Confidence 99999999999963
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-10 Score=111.66 Aligned_cols=212 Identities=25% Similarity=0.276 Sum_probs=135.5
Q ss_pred CCCCCCEEEccCCcCCccCC--ccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCC
Q 040540 97 QLRRLRVMSLAYNKLSGSFP--SWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLV 174 (669)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~ 174 (669)
++.+|+...|.+.... ..+ .....+++++.|||++|-|+.-. .+-.....|++|+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~----------------------~v~~i~eqLp~Le 175 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWF----------------------PVLKIAEQLPSLE 175 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHH----------------------HHHHHHHhcccch
Confidence 5666777777666654 222 24556666677777666655211 1112334566666
Q ss_pred EEEcccCCCcccCCcc-ccCCCCCCEEEccCCCCCCC-CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecc
Q 040540 175 NLGLWSCNLQGQIPTE-IGSLQNLKNLDLADNKLSGL-IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252 (669)
Q Consensus 175 ~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls 252 (669)
.|+++.|++.-..... -..+++|+.|.|+.|.++-. +-.....+++|+.|.+..|...+..-.. ...+..|+.|||+
T Consensus 176 ~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 176 NLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLS 254 (505)
T ss_pred hcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhcccc
Confidence 7777777664222111 12567899999999999732 2223456889999999999522111111 1246789999999
Q ss_pred cCcccccCC-ccccCCCCCCEEeCCCCCcccc-Cccc-----cCCCCCCCEEEccCCccccCCCCCcccccccccCCCCC
Q 040540 253 TNNLIGKIP-NSITNATKLIGLDLGFNSFSGH-IPNT-----FGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRN 325 (669)
Q Consensus 253 ~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~-~p~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~ 325 (669)
+|++....- .....++.|..|+++.+.+... .|+. ....++|++|++..|++... ..+..+..+.+
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-------~sl~~l~~l~n 327 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-------RSLNHLRTLEN 327 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-------cccchhhccch
Confidence 999864321 3456778899999998887643 2222 35678999999999988653 34455666788
Q ss_pred CCEEECcCCCCccc
Q 040540 326 LSNLALASNPLGGI 339 (669)
Q Consensus 326 L~~L~l~~n~l~~~ 339 (669)
|+.|.+..|++...
T Consensus 328 lk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 328 LKHLRITLNYLNKE 341 (505)
T ss_pred hhhhhccccccccc
Confidence 88888888877643
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-10 Score=104.51 Aligned_cols=207 Identities=20% Similarity=0.174 Sum_probs=116.5
Q ss_pred ccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCc---cCCccccCCccccccccc-ccCccccCC
Q 040540 65 GTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG---SFPSWIGVLSKLRILRLD-YNNFTGPIP 140 (669)
Q Consensus 65 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~-~n~l~~~~p 140 (669)
..+|-.+.-+.+|+++.+|.+.-.. +-+....-+.|+++.+.+..++. .+|. ..+..+.-+ ..-.+|..-
T Consensus 204 ~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe-----~~~~D~~~~E~~t~~G~~~ 277 (490)
T KOG1259|consen 204 NRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPE-----TILADPSGSEPSTSNGSAL 277 (490)
T ss_pred cccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccch-----hhhcCccCCCCCccCCceE
Confidence 3345556667788888888875331 22222233567777776665431 1221 111111111 111223333
Q ss_pred cccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCC
Q 040540 141 NSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNIST 220 (669)
Q Consensus 141 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 220 (669)
..+...+.|+++|+++|.++ .+..++.-++.++.|+++.|.++.. ..+..+++|+.||||+|.++.. -.+-.++.+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcC
Confidence 34444556666666666665 3445555566777777777776532 2266677777777777777632 233345667
Q ss_pred CcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC-CccccCCCCCCEEeCCCCCccccC
Q 040540 221 MRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI-PNSITNATKLIGLDLGFNSFSGHI 284 (669)
Q Consensus 221 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~ 284 (669)
++.|.++.|.+.. -..+. .+-+|.+||+++|++...- -..+++++-|..+.|-+|.+.+.+
T Consensus 354 IKtL~La~N~iE~--LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred EeeeehhhhhHhh--hhhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7777777776531 12222 4556777788877765321 245677788888888888877543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-10 Score=108.46 Aligned_cols=241 Identities=19% Similarity=0.205 Sum_probs=132.8
Q ss_pred CCEEEEEcCCCCCccc----ccccccCCCCCCEEeCCCCcCcc----cCCcc-------cCCCCCCCEEEccCCcCCccC
Q 040540 51 QRVTALNLSDMGLGGT----IPLHFGNLSFLVSLDISENNFHG----HLPKE-------LGQLRRLRVMSLAYNKLSGSF 115 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~-------l~~l~~L~~L~L~~n~l~~~~ 115 (669)
..++.++||+|.++.. +...+.+.++|+..++|+- ++| .+|.. +-..++|++||||.|-+....
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4678899999988643 3345677778888888863 333 33433 335568888888888876433
Q ss_pred C----ccccCCcccccccccccCccccCCc-ccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCccc----
Q 040540 116 P----SWIGVLSKLRILRLDYNNFTGPIPN-SLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ---- 186 (669)
Q Consensus 116 p----~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~---- 186 (669)
+ +-+.+...|++|.|.+|.+. +..+ .++. .|..|. . -..+++-++|+++....|++-..
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccccHHH
Confidence 3 33456778888888888775 1111 1110 000000 0 01122334555555555554321
Q ss_pred CCccccCCCCCCEEEccCCCCCC----CCCccccCCCCCcEEEcccCCCcccc----chhhhccCCCCCeeecccCcccc
Q 040540 187 IPTEIGSLQNLKNLDLADNKLSG----LIPPTIFNISTMRILTLESNQLSGRL----PSTIGHSLRNIEYLALSTNNLIG 258 (669)
Q Consensus 187 ~p~~~~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~~l~~L~~L~ls~n~l~~ 258 (669)
+-..|...+.|+.+.++.|.+.. .+...+..+++|++||++.|.++..- ...+ ..+++|+.|++++|.+..
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL-~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL-SSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh-cccchheeeccccccccc
Confidence 11223334555666666655531 12233455666666666666654221 1111 245567777777776654
Q ss_pred cCCccc-----cCCCCCCEEeCCCCCcccc----CccccCCCCCCCEEEccCCccc
Q 040540 259 KIPNSI-----TNATKLIGLDLGFNSFSGH----IPNTFGNLRHLSVLNVMMNNLT 305 (669)
Q Consensus 259 ~~p~~~-----~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 305 (669)
.-..++ ...++|+.+.+.+|.++.. +-..+...+.|..|+|++|.+.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 332222 2246777777777776532 2223455777888888888874
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-09 Score=95.36 Aligned_cols=65 Identities=29% Similarity=0.467 Sum_probs=20.8
Q ss_pred cCCCCCCCEEEcccCCCcccCCccc-cCCCCCCEEEccCCCCCCCC-CccccCCCCCcEEEcccCCCc
Q 040540 167 IGNLRKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLI-PPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 167 ~~~L~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~n~l~ 232 (669)
+..+++|++|++++|+++. ++..+ ..+++|++|++++|++...- -..+..+++|+.|++.+|.++
T Consensus 60 l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 4445556666666666653 22222 24566666666666665321 123445566666666666554
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-09 Score=79.77 Aligned_cols=59 Identities=34% Similarity=0.448 Sum_probs=30.5
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccC
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 134 (669)
+|++|++++|+++...+..|..+++|++|++++|.+....|+.|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444445555555555555555554444455555555555555554
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-09 Score=116.62 Aligned_cols=129 Identities=26% Similarity=0.347 Sum_probs=64.2
Q ss_pred CCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCee
Q 040540 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEML 152 (669)
Q Consensus 73 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 152 (669)
.+..++.+++..|.+.. +-..+..+++|..|++.+|+|.. +...+..+++|++|+|++|.|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 44555666666666542 22335566666666666666653 2222555666666666666665322 23344445555
Q ss_pred ecccccccccCCcccCCCCCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCCCC
Q 040540 153 RAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP-TEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 153 ~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~ 208 (669)
++++|.+... ..+..+.+|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 5555554321 223334444555555555443222 1 233444444444444443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.8e-09 Score=77.13 Aligned_cols=60 Identities=32% Similarity=0.370 Sum_probs=42.4
Q ss_pred CCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccc
Q 040540 99 RRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI 158 (669)
Q Consensus 99 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (669)
++|++|++++|++....++.|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356777777777775555677777777777777777776666666777777777666664
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-09 Score=113.34 Aligned_cols=197 Identities=25% Similarity=0.319 Sum_probs=94.7
Q ss_pred CCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEE
Q 040540 97 QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNL 176 (669)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L 176 (669)
.+..++.++++.|.+.. +-..+..+.+|+.|++.+|++.. +...+..+++|++|++++|.++... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 34445555555565542 22335555666666666666652 2222555666666666666665332 24445556666
Q ss_pred EcccCCCcccCCccccCCCCCCEEEccCCCCCCCCC-ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCc
Q 040540 177 GLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIP-PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255 (669)
Q Consensus 177 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~ 255 (669)
++++|.++.. ..+..++.|+.+++++|.++..-+ . ...+.+++.+.+.+|.+.. + ..+. .+..+..+++..|.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i-~~~~-~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-I-EGLD-LLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-c-cchH-HHHHHHHhhccccc
Confidence 6666666422 223445566666666666654433 1 3455555666666665531 1 1111 12233333444454
Q ss_pred ccccCCccccCCC--CCCEEeCCCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 256 LIGKIPNSITNAT--KLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 256 l~~~~p~~~~~l~--~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
+...-+ +..+. .|+.+++++|.+.. ++..+..+..+..|++..|++..
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc
Confidence 432211 11111 24555555555542 21334445555555555555443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-09 Score=104.78 Aligned_cols=252 Identities=22% Similarity=0.281 Sum_probs=155.2
Q ss_pred ccccCCCCCCEEeCCCCcCccc----CCcccCCCCCCCEEEccCCcCCc----cCCccc-------cCCccccccccccc
Q 040540 69 LHFGNLSFLVSLDISENNFHGH----LPKELGQLRRLRVMSLAYNKLSG----SFPSWI-------GVLSKLRILRLDYN 133 (669)
Q Consensus 69 ~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~-------~~l~~L~~L~L~~n 133 (669)
+.+..+..++.|+||+|.+... +...+.+.++|+.-++++- ++| .+|+.+ ...++|++||||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4566788899999999988532 3445667778888887642 233 334332 22346666666666
Q ss_pred CccccCCcc----cCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 134 NFTGPIPNS----LFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 134 ~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
-|.-.-+.. +.+...|+.|.+.+|-++..-...++. .|..|. .++ -.+.-++|+.+...+|++..
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK-------KAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh-------ccCCCcceEEEEeecccccc
Confidence 664322222 233445555555554443111111110 111111 111 12344689999999999864
Q ss_pred C----CCccccCCCCCcEEEcccCCCccc----cchhhhccCCCCCeeecccCccccc----CCccccCCCCCCEEeCCC
Q 040540 210 L----IPPTIFNISTMRILTLESNQLSGR----LPSTIGHSLRNIEYLALSTNNLIGK----IPNSITNATKLIGLDLGF 277 (669)
Q Consensus 210 ~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~ 277 (669)
. +...|...+.|+.+.++.|.+.-. +-..+. ..++|+.|||.+|-++.. +...+..++.|+.+++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 3 233466678999999999987411 112233 578999999999988743 234566778999999999
Q ss_pred CCccccCc----ccc-CCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCc
Q 040540 278 NSFSGHIP----NTF-GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG 337 (669)
Q Consensus 278 n~l~~~~p----~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 337 (669)
|.+...-. ..+ ...++|++|.+.+|.++..... ....++...+.|..|++++|.+.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~----~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL----ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH----HHHHHHhcchhhHHhcCCccccc
Confidence 98864322 223 3468999999999988754211 12233455789999999999994
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-07 Score=94.70 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=130.7
Q ss_pred Cchhhhhhcccc----ccccceecccc-ccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 449 FDSECEVLRNVR----HRNLIKIISSC-SNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 449 ~~~e~~~l~~l~----h~niv~l~~~~-~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+..|..++..+. .+++..+++.. ....+.++||+.. +.+|.++.+... ..++..+...|+.|+..+|+++|.
T Consensus 63 l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~- 140 (322)
T KOG1164|consen 63 LKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHS- 140 (322)
T ss_pred chhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHh-
Confidence 344666666554 24666777766 4677889999976 579999875543 568889999999999999999994
Q ss_pred CCCCCeeecCCCCcc-------------------------c---------------ccccccccccCccccccCCCcCcc
Q 040540 523 HSSAPIIHCEGEDSV-------------------------T---------------QTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~-------------------------~---------------~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.+++|||+|+.. . .....||..|+++....+...+.+
T Consensus 141 ---~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~ 217 (322)
T KOG1164|consen 141 ---KGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRR 217 (322)
T ss_pred ---cCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCc
Confidence 489999998420 0 011238999999999988889999
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
.|+||.+-++.|+..|..||........ ............... . ....+..+.++...+-..+..
T Consensus 218 DDles~~Y~l~el~~g~LPW~~~~~~~~-~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~ 282 (322)
T KOG1164|consen 218 DDLESLFYMLLELLKGSLPWEALEMTDL-KSKFEKDPRKLLTDR-----F---------GDLKPEEFAKILEYIDSLDYE 282 (322)
T ss_pred hhhhhHHHHHHHHhcCCCCCccccccch-HHHHHHHhhhhcccc-----c---------cCCChHHHHHHHHHhhccCCc
Confidence 9999999999999999999965322111 111111100000000 0 011122334445545558899
Q ss_pred CCCCHHHHHHHHHHhHHH
Q 040540 643 KRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~ 660 (669)
++|....+...+++....
T Consensus 283 ~~Pdy~~~~~~l~~~~~~ 300 (322)
T KOG1164|consen 283 DKPDYEKLAELLKDVFDS 300 (322)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999988877554
|
|
| >PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.9e-08 Score=94.74 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=86.7
Q ss_pred ceeeccCCCCChHHhhhc---CC---CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCccc-------------
Q 040540 478 ALVLEFMPNGSLEKWLYS---HN---YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVT------------- 538 (669)
Q Consensus 478 ~lv~ey~~~g~L~~~l~~---~~---~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~~------------- 538 (669)
+++|+-+. ++|.+++.. .. ..+....+..+..|+.+.+++||+. +++|.|++....
T Consensus 115 ~~l~P~~~-~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~----GlVHgdi~~~nfll~~~G~v~Lg~F 189 (288)
T PF14531_consen 115 FLLMPRAQ-GDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY----GLVHGDIKPENFLLDQDGGVFLGDF 189 (288)
T ss_dssp EEEEE--S-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT----TEEEST-SGGGEEE-TTS-EEE--G
T ss_pred hhccchhh-hcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc----ceEecccceeeEEEcCCCCEEEcCh
Confidence 45666664 688777542 11 2344556778889999999999964 799999995410
Q ss_pred ---------ccccccccccCccccccC--------CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCC
Q 040540 539 ---------QTTTMATIGYMAPEYGSE--------GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP 601 (669)
Q Consensus 539 ---------~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~ 601 (669)
......+..|.+||.... ..++.+.|.|++|+++|.|.+|+.||.....+..
T Consensus 190 ~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~----------- 258 (288)
T PF14531_consen 190 SSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEAD----------- 258 (288)
T ss_dssp GGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGST-----------
T ss_pred HHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCcccc-----------
Confidence 000224567889997643 2478899999999999999999999975422111
Q ss_pred CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 602 HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
.+..+..+ . +.++.+.+++...++.+|.+|
T Consensus 259 ------~~~~f~~C------~-~~Pe~v~~LI~~lL~~~~~~R 288 (288)
T PF14531_consen 259 ------PEWDFSRC------R-DMPEPVQFLIRGLLQRNPEDR 288 (288)
T ss_dssp ------SGGGGTTS------S----HHHHHHHHHHT-SSGGGS
T ss_pred ------ccccchhc------C-CcCHHHHHHHHHHccCCcccC
Confidence 00012121 3 566778999999999999988
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-08 Score=109.36 Aligned_cols=182 Identities=20% Similarity=0.216 Sum_probs=131.3
Q ss_pred hhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhh-hcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 452 ECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL-YSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 452 e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l-~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
|..+-..+. |+|++..++....++..+++.+|..+|++++.+ .......+......+..+...|+.|+|- ..++.
T Consensus 70 e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~---~~~~~ 146 (601)
T KOG0590|consen 70 ETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHP---ENGVT 146 (601)
T ss_pred cccccccccccccccccCCccCCCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCc---ccccc
Confidence 444444444 999999999999999999999999999999999 5433245666677789999999999992 24688
Q ss_pred ecCCCCcc-----------------------------ccccccc-ccccCccccccCC-CcCccccchhhHHHHHHHHhC
Q 040540 530 HCEGEDSV-----------------------------TQTTTMA-TIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 530 h~d~~~~~-----------------------------~~~~~~g-t~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg 578 (669)
|+|+++.. .....+| ++.|+|||...+. ..+...|+||.|+++.-+++|
T Consensus 147 h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g 226 (601)
T KOG0590|consen 147 HRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTG 226 (601)
T ss_pred cCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccC
Confidence 88887430 0011247 9999999998884 567889999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
..|++...........|...... . ....+........++..+++..+|..|.+.+++.
T Consensus 227 ~~p~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~ 284 (601)
T KOG0590|consen 227 ELPWDFPSRKDGRYSSWKSNKGR--F-------------TQLPWNSISDQAHDLLHKILKENPSNRLSIEELK 284 (601)
T ss_pred CCCccccccccccceeecccccc--c-------------ccCccccCChhhhhcccccccCCchhcccccccc
Confidence 99997654444333333322100 0 0011334445567888889999999999887764
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.5e-07 Score=100.22 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=110.9
Q ss_pred ccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCc--
Q 040540 459 VRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDS-- 536 (669)
Q Consensus 459 l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~-- 536 (669)
.++|.++.....+......+++++|..++++...++..+..-....| .....+.++.+|||.. .+.|+|.++.
T Consensus 861 p~~P~v~~~~~s~~~rsP~~L~~~~~~~~~~~Skl~~~~~~saepaR-s~i~~~vqs~e~L~s~----~r~h~~~~p~~~ 935 (1205)
T KOG0606|consen 861 PRSPAVVRSFPSFPCRSPLPLVGHYLNGGDLPSKLHNSGCLSAEPAR-SPILERVQSLESLHSS----LRKHRDLKPDSL 935 (1205)
T ss_pred CCCCceecccCCCCCCCCcchhhHHhccCCchhhhhcCCCccccccc-chhHHHHhhhhccccc----hhhcccccccch
Confidence 34566665555534455668999999999999999875532233334 3445577889999843 3677765510
Q ss_pred -------------------------------------------------cc-----ccccccccccCccccccCCCcCcc
Q 040540 537 -------------------------------------------------VT-----QTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 537 -------------------------------------------------~~-----~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.. .....||+.|.|||...+..++..
T Consensus 936 l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ 1015 (1205)
T KOG0606|consen 936 LIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSA 1015 (1205)
T ss_pred hhcccCCcccCccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCc
Confidence 00 122358999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
+|+|++|++++|.++|.+||.....+... +.+ ....-+... .+......+++++.+-+..+|.
T Consensus 1016 ad~~~~g~~l~e~l~g~pp~na~tpq~~f------~ni----~~~~~~~p~-------g~~~~s~~aq~~~~~ll~~~~~ 1078 (1205)
T KOG0606|consen 1016 ADWWSSGVCLFEVLTGIPPFNAETPQQIF------ENI----LNRDIPWPE-------GPEEGSYEAQDLINRLLTEEPT 1078 (1205)
T ss_pred chhhhhhhhhhhhhcCCCCCCCcchhhhh------hcc----ccCCCCCCC-------CccccChhhhhhhhhhhccCch
Confidence 99999999999999999999764332210 000 000000000 1234455678888888999999
Q ss_pred CCCCHH
Q 040540 643 KRMHMT 648 (669)
Q Consensus 643 ~Rps~~ 648 (669)
+|-.|.
T Consensus 1079 qr~~a~ 1084 (1205)
T KOG0606|consen 1079 QRLGAK 1084 (1205)
T ss_pred hccCcc
Confidence 997654
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.4e-07 Score=91.58 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=56.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.++..++|+++++.+..+ ...++||||+++++|... .. .. ...++.++++|+.|+|. .
T Consensus 66 ~~~~~E~~iL~~L~h~~iv~~l~~~---~~~~LVmE~~~G~~L~~~-~~----~~---~~~~~~~i~~aL~~lH~----~ 130 (365)
T PRK09188 66 HLAAREIRALKTVRGIGVVPQLLAT---GKDGLVRGWTEGVPLHLA-RP----HG---DPAWFRSAHRALRDLHR----A 130 (365)
T ss_pred HHHHHHHHHHHhccCCCCCcEEEEc---CCcEEEEEccCCCCHHHh-Cc----cc---hHHHHHHHHHHHHHHHH----C
Confidence 3577899999999999998533222 346899999999999732 11 11 14678899999999994 5
Q ss_pred CeeecCC-CCc
Q 040540 527 PIIHCEG-EDS 536 (669)
Q Consensus 527 ~i~h~d~-~~~ 536 (669)
+|+|||+ |+.
T Consensus 131 gIiHrDL~KP~ 141 (365)
T PRK09188 131 GITHNDLAKPQ 141 (365)
T ss_pred CCeeCCCCCcc
Confidence 8999999 753
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1e-06 Score=59.95 Aligned_cols=39 Identities=36% Similarity=0.773 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHhhcCC-CcccccCCCCCC--CCCCCccceeeC
Q 040540 8 TTDQSSLLAFKAHAFD-YRSALANNWSIS--YPICSWAGISCG 47 (669)
Q Consensus 8 ~~~~~~l~~~~~~~~~-~~~~l~~~w~~~--~~~c~~~g~~c~ 47 (669)
+.|++||++||.++.+ +...+.+ |+.. .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 5789999999999975 5556665 9987 689999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.1e-08 Score=102.34 Aligned_cols=125 Identities=30% Similarity=0.404 Sum_probs=70.7
Q ss_pred CCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCc-ccCCCCCCCEEEc
Q 040540 100 RLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPS-RIGNLRKLVNLGL 178 (669)
Q Consensus 100 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~L~~L~~L~l 178 (669)
+|.+.+.++|.+. ....++.-++.|+.|||++|+++.. +.+..+++|+.||+++|.+.- +|. ..... +|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeeee
Confidence 3555566666665 4455566666777777777776632 245566667777777776652 222 11122 3666666
Q ss_pred ccCCCcccCCccccCCCCCCEEEccCCCCCCCC-CccccCCCCCcEEEcccCCC
Q 040540 179 WSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI-PPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 179 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~n~l 231 (669)
++|.++... .+.+|.+|+.||+++|-+.+.- -..++.+..|..|+|.+|.+
T Consensus 240 rnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 666665332 3556666777777777665421 11234455566666666665
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.9e-08 Score=101.16 Aligned_cols=179 Identities=26% Similarity=0.237 Sum_probs=115.4
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCcccCCC-CCCCEEEccCCcCC----------ccCCccccCCcccccccccccCcc
Q 040540 68 PLHFGNLSFLVSLDISENNFHGHLPKELGQL-RRLRVMSLAYNKLS----------GSFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 68 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
|-++..+..|++|.|.++.+.. ..+ +..+ .+|+.|.= +|.+. |.+-..+ ....|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~G-L~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKG-LQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhh-hHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 4467788888888888887753 111 1111 12333321 12111 1111111 1246788888888886
Q ss_pred ccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCcccc
Q 040540 137 GPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF 216 (669)
Q Consensus 137 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 216 (669)
.+..++.-++.|+.|+|+.|++...- .+..+.+|++|||++|.++....-....+ +|..|.+++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHH
Confidence 56667778888999999999887543 67888899999999999874332222333 388899999988754 4577
Q ss_pred CCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcc
Q 040540 217 NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL 256 (669)
Q Consensus 217 ~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l 256 (669)
++.+|+.||+++|-+.+.---.+...+..|..|.|.+|.+
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8889999999999876532211111356677788888765
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.8e-07 Score=85.13 Aligned_cols=114 Identities=10% Similarity=0.113 Sum_probs=77.8
Q ss_pred Cchhhhhhccccccccceecccccc--------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSN--------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~--------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+|+..+.++.|+++..+..+... ....+++|||++|.+|.++.. .+. ....+++.++..+|
T Consensus 82 ~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~-----~~~----~~~~~i~~~l~~lH 152 (232)
T PRK10359 82 YENLIVQTDRVRSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE-----ISE----DVKAKIKASIESLH 152 (232)
T ss_pred HHHHHHHHHHHHHCCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhh-----ccH----HHHHHHHHHHHHHH
Confidence 4678888999999999988776432 235789999999999988742 221 24568899999999
Q ss_pred cCCCCCCeeecCCCCccccccc-------c-cccccCccc----cccCCCcCccccchhhHHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDSVTQTTT-------M-ATIGYMAPE----YGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~~~~~~-------~-gt~~y~aPE----~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
. .+++|+|++++....+. . ++..+..+. +...+.|..++|+|||||++.-.
T Consensus 153 ~----~gi~H~Dikp~Nili~~~gi~liDfg~~~~~~e~~a~d~~vler~y~~~~di~~lg~~~~~~ 215 (232)
T PRK10359 153 Q----HGMVSGDPHKGNFIVSKNGLRIIDLSGKRCTAQRKAKDRIDLERHYGIKNEIKDLGYYLLIY 215 (232)
T ss_pred H----cCCccCCCChHHEEEeCCCEEEEECCCcccccchhhHHHHHHHhHhcccccccceeEeehHH
Confidence 5 48999999976321111 1 121121111 23345577899999999987654
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.2e-06 Score=78.02 Aligned_cols=122 Identities=13% Similarity=0.056 Sum_probs=83.3
Q ss_pred cCchhhhhhccccc-cccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRH-RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
-+..|+.++.++.| +++..++++ ...+++|||+.+.+|.+.+.. ....++.++.++++++|. .
T Consensus 47 l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI~G~~L~~~~~~--------~~~~~~~qi~~~L~~lH~----~ 110 (218)
T PRK12274 47 LARREALALRQLDGLPRTPRLLHW----DGRHLDRSYLAGAAMYQRPPR--------GDLAYFRAARRLLQQLHR----C 110 (218)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeeecCccHHhhhhh--------hhHHHHHHHHHHHHHHHH----C
Confidence 35679999999954 667777765 335899999999888765421 123577889999999994 4
Q ss_pred CeeecCC-CCcccc--------------------cc------------------cccccccCccccccC-CCcC-ccccc
Q 040540 527 PIIHCEG-EDSVTQ--------------------TT------------------TMATIGYMAPEYGSE-GIVS-AKCDV 565 (669)
Q Consensus 527 ~i~h~d~-~~~~~~--------------------~~------------------~~gt~~y~aPE~~~~-~~~~-~~~Dv 565 (669)
+|+|+|+ |+.... .. ...++.|++|+-..- ...+ .+.++
T Consensus 111 GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w 190 (218)
T PRK12274 111 GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELW 190 (218)
T ss_pred cCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHH
Confidence 8999999 542100 00 013455555543221 1223 56789
Q ss_pred hhhHHHHHHHHhCCCCCCcC
Q 040540 566 YSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 566 ~s~Gvil~el~tg~~p~~~~ 585 (669)
++-|.-+|+++||+.+....
T Consensus 191 ~~~g~~~~~~~~~~~~~~~~ 210 (218)
T PRK12274 191 FATGKPVYRFVTRRVLHWED 210 (218)
T ss_pred HHhcchHHHHHhccCCcccc
Confidence 99999999999999987653
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2e-07 Score=78.36 Aligned_cols=104 Identities=26% Similarity=0.393 Sum_probs=74.8
Q ss_pred EEEEEcCCCCCccccc---ccccCCCCCCEEeCCCCcCcccCCcccC-CCCCCCEEEccCCcCCccCCccccCCcccccc
Q 040540 53 VTALNLSDMGLGGTIP---LHFGNLSFLVSLDISENNFHGHLPKELG-QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 128 (669)
...+||+.|.+- .++ ..+....+|+..+|++|.+.. .|..|. ..+.+++|+|++|.++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 456788887763 333 245566777888888888874 444443 4457888888888887 678888888888888
Q ss_pred cccccCccccCCcccCCCCCCCeeeccccccc
Q 040540 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIG 160 (669)
Q Consensus 129 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 160 (669)
+++.|.+. ..|..+..|.+|..|+...|...
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 88888886 56666666777777777666543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.1e-07 Score=84.48 Aligned_cols=84 Identities=26% Similarity=0.278 Sum_probs=40.0
Q ss_pred CCCCCEEeCCCCcCccc--CCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCcccc-CCcccCCCCCCC
Q 040540 74 LSFLVSLDISENNFHGH--LPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGP-IPNSLFNLSRLE 150 (669)
Q Consensus 74 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~ 150 (669)
.+.++.|||.+|.|+.. +-..+.+++.|++|+|+.|+++..+-..-..+.+|++|-|.+..+.=. .-..+..+++++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 35566666666666532 222344566666666666666532211113345566666655554311 112233444444
Q ss_pred eeecccc
Q 040540 151 MLRAEFN 157 (669)
Q Consensus 151 ~L~l~~n 157 (669)
.|.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 4444444
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.1e-06 Score=80.58 Aligned_cols=86 Identities=24% Similarity=0.253 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCCCcc--cccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCc-cCCccccCCccccc
Q 040540 51 QRVTALNLSDMGLGG--TIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG-SFPSWIGVLSKLRI 127 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~ 127 (669)
.+|+.+||.+|.++. .+...+.+|++|++|+|+.|.+...+...-..+.+|++|.|.+..+.- ..-..+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 468999999999874 344567899999999999999975443322467899999998887752 23355678899999
Q ss_pred ccccccCcc
Q 040540 128 LRLDYNNFT 136 (669)
Q Consensus 128 L~L~~n~l~ 136 (669)
|.++.|++.
T Consensus 151 lHmS~N~~r 159 (418)
T KOG2982|consen 151 LHMSDNSLR 159 (418)
T ss_pred hhhccchhh
Confidence 999998654
|
|
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.4e-05 Score=75.92 Aligned_cols=83 Identities=11% Similarity=0.158 Sum_probs=63.9
Q ss_pred ccCchhhhhhccc-----cccccceecccccccc---c-cceeecc--CCCCChHHhhhcCCCccCHHHHHHHHHhHHhh
Q 040540 447 RSFDSECEVLRNV-----RHRNLIKIISSCSNPD---F-KALVLEF--MPNGSLEKWLYSHNYFLDILERLNIMIDVGSA 515 (669)
Q Consensus 447 ~~~~~e~~~l~~l-----~h~niv~l~~~~~~~~---~-~~lv~ey--~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~ 515 (669)
+.+.+|+..+..+ .||||+++++++..+. . ..+|+|| +++|+|.+++.+. .+++. ..++.++..+
T Consensus 41 ~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~--~~~e~--~~~~~~~L~~ 116 (210)
T PRK10345 41 KEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQC--RYEED--VAQLRQLLKK 116 (210)
T ss_pred HHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcc--cccHh--HHHHHHHHHH
Confidence 3567889999888 5799999999987753 3 3378999 6689999999753 24444 3567788878
Q ss_pred h-hhhhcCCCCCCeeecCCCCcc
Q 040540 516 L-EYLRHGHSSAPIIHCEGEDSV 537 (669)
Q Consensus 516 l-~~lh~~~~~~~i~h~d~~~~~ 537 (669)
+ +|||. .+|+|||+|+..
T Consensus 117 l~~yLh~----~~IvhrDlKp~N 135 (210)
T PRK10345 117 LKRYLLD----NRIVTMELKPQN 135 (210)
T ss_pred HHHHHHH----CCEeecCCCHHH
Confidence 7 99995 479999999763
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.4e-07 Score=86.22 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=43.8
Q ss_pred ccccccccccCccc-cCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCC-Cccc-CCccccCCCCCCEE
Q 040540 124 KLRILRLDYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN-LQGQ-IPTEIGSLQNLKNL 200 (669)
Q Consensus 124 ~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L 200 (669)
.|++|||++..++. .+...+..+++|+.|.+.++++...+-..++.-.+|+.|+++.++ ++.. ..-.+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666666652 122334455566666666666655555555555566666665544 2210 11123445555555
Q ss_pred EccCCCCC
Q 040540 201 DLADNKLS 208 (669)
Q Consensus 201 ~l~~N~l~ 208 (669)
+|++|.++
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.5e-06 Score=71.88 Aligned_cols=111 Identities=26% Similarity=0.383 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCCCCcccccccc-cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHF-GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 128 (669)
...++..+|++|++.. .|+.| ...+.++.|+|++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|-+|
T Consensus 52 ~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 4678999999999974 44444 45568999999999998 68888999999999999999998 678888889999999
Q ss_pred cccccCccccCCcccCCCCCCCeeecccccccccCC
Q 040540 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIP 164 (669)
Q Consensus 129 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 164 (669)
+..+|... .+|-.+..-..+-..++.++.+++.-+
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 99999876 455443332223333344444444433
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.8e-07 Score=87.59 Aligned_cols=155 Identities=20% Similarity=0.204 Sum_probs=70.7
Q ss_pred CCcccccccccccCccccCCcccCCCCCCCeeeccccc-ccc-cCCcccCCCCCCCEEEcccCCCcccCCcc-ccC-CCC
Q 040540 121 VLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI-IGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTE-IGS-LQN 196 (669)
Q Consensus 121 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~-~~~-l~~ 196 (669)
...+|+.|.|.++++...+-..+.+-.+|+.|+++.+. ++. ...--+.+++.|..|+++-|.+....-.. +.+ -++
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 33444444444444444444444444444444444321 110 00011334455555555555543322111 111 134
Q ss_pred CCEEEccCCCCC---CCCCccccCCCCCcEEEcccCC-CccccchhhhccCCCCCeeecccCcccccCCcc---ccCCCC
Q 040540 197 LKNLDLADNKLS---GLIPPTIFNISTMRILTLESNQ-LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNS---ITNATK 269 (669)
Q Consensus 197 L~~L~l~~N~l~---~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~---~~~l~~ 269 (669)
|+.|+|+++.-. .-+..-....++|..|||+.|. ++...-..++ .++-|++|.++.|. +.+|.. +...+.
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY--~i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCY--DIIPETLLELNSKPS 364 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhc--CCChHHeeeeccCcc
Confidence 555555554211 0111112345566666666653 3322222333 56777777777765 445553 456677
Q ss_pred CCEEeCCCC
Q 040540 270 LIGLDLGFN 278 (669)
Q Consensus 270 L~~L~ls~n 278 (669)
|.+||..++
T Consensus 365 l~yLdv~g~ 373 (419)
T KOG2120|consen 365 LVYLDVFGC 373 (419)
T ss_pred eEEEEeccc
Confidence 888887554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.4e-05 Score=54.48 Aligned_cols=36 Identities=39% Similarity=0.579 Sum_probs=15.1
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCC
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 112 (669)
+|++|++++|.|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.69 E-value=3e-05 Score=52.80 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=28.8
Q ss_pred CCCCEEEccCCcCCccCCccccCCcccccccccccCcc
Q 040540 99 RRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 99 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
++|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46888888888888 56667888888888888888887
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=75.61 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=15.2
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCcEEEcccC
Q 040540 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESN 229 (669)
Q Consensus 196 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n 229 (669)
+|++|++++|.... .|..+- .+|+.|.++.|
T Consensus 157 SLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 46666666555432 222221 35666666554
|
|
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.2e-05 Score=71.77 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=57.9
Q ss_pred hhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeee
Q 040540 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH 530 (669)
Q Consensus 451 ~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h 530 (669)
.|...+..+.++++....... ....++||||++++++...... ...++..+...++.+++.++.|+||. .+|+|
T Consensus 68 ~E~~~l~~l~~~~v~~p~~~~--~~~~~iVmE~i~g~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~l~H~---~giiH 141 (190)
T cd05147 68 KEMRNLKRLVTAGIPCPEPIL--LKSHVLVMEFIGDDGWAAPRLK-DAPLSESKARELYLQVIQIMRILYQD---CRLVH 141 (190)
T ss_pred HHHHHHHHHHHCCCCCCcEEE--ecCCEEEEEEeCCCCCcchhhh-cCCCCHHHHHHHHHHHHHHHHHHHHh---CCccc
Confidence 477788888776653322211 1223799999998877654332 24578888999999999999999543 47999
Q ss_pred cCCCCcc
Q 040540 531 CEGEDSV 537 (669)
Q Consensus 531 ~d~~~~~ 537 (669)
+|+|+..
T Consensus 142 rDlkP~N 148 (190)
T cd05147 142 ADLSEYN 148 (190)
T ss_pred CCCCHHH
Confidence 9999763
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00023 Score=73.12 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=36.2
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+..+.+++.|++++|.++ .+|. + -.+|+.|.++++.--..+|+.+ ..+|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 445678888999988776 4452 2 2358888887744333556544 246777777766
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=7.2e-05 Score=70.62 Aligned_cols=179 Identities=18% Similarity=0.201 Sum_probs=87.7
Q ss_pred cccCCCCCCEEeCCCCCccccCccc----cCCCCCCCEEEccCCccccCCCCCcc-----cccccccCCCCCCCEEECcC
Q 040540 263 SITNATKLIGLDLGFNSFSGHIPNT----FGNLRHLSVLNVMMNNLTTESSSADQ-----WSFLSSLTNCRNLSNLALAS 333 (669)
Q Consensus 263 ~~~~l~~L~~L~ls~n~l~~~~p~~----~~~l~~L~~L~l~~N~l~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~ 333 (669)
.+..|+.|+.++||.|.|....|.. +..-+.|.+|.+.+|.+.......-. ..+......-+.|+......
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3456677777777777776555542 34556677777776665432211100 00111122334555555555
Q ss_pred CCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCccccc-----CchhhcCCCCCCeeeCc
Q 040540 334 NPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY-----VPHDLCHLERLNILNLS 408 (669)
Q Consensus 334 n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~-----~p~~~~~l~~L~~L~ls 408 (669)
|++..-....+... +..-..|+.+.+..|.|.-. .-..+..+.+|+.||+.
T Consensus 167 NRlengs~~~~a~~------------------------l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlq 222 (388)
T COG5238 167 NRLENGSKELSAAL------------------------LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQ 222 (388)
T ss_pred chhccCcHHHHHHH------------------------HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecc
Confidence 55432222222111 11112344444444443211 11122345677778888
Q ss_pred CCccceeC----cccccCCCCCCEEECCCCcceecCCcccccccCchhhhhhccccccccceecccccc
Q 040540 409 GNKLSGHI----PPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSN 473 (669)
Q Consensus 409 ~n~l~~~~----p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 473 (669)
+|.++... ...+..++.|++|.+..|-++..- .. .-.........||+-.+.+-|..
T Consensus 223 DNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G-----~~---~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 223 DNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG-----VK---SVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ccchhhhhHHHHHHHhcccchhhhccccchhhcccc-----HH---HHHHHhhhhcCCCccccccchhh
Confidence 77776432 234455667888888877765311 11 11223344556766666655533
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=3.4e-05 Score=72.72 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=17.7
Q ss_pred CCCEEEccCCCCCCC-----CCccccCCCCCcEEEcccCCCc
Q 040540 196 NLKNLDLADNKLSGL-----IPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 196 ~L~~L~l~~N~l~~~-----~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
+|+.+.+..|.|.-. .-..++.+.+|+.||++.|.++
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 455555555554311 1112334455666666666554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=4.1e-05 Score=85.33 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=89.1
Q ss_pred CCCCEEEccCCcCCcc-CCccc-cCCcccccccccccCcccc-CCcccCCCCCCCeeecccccccccCCcccCCCCCCCE
Q 040540 99 RRLRVMSLAYNKLSGS-FPSWI-GVLSKLRILRLDYNNFTGP-IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVN 175 (669)
Q Consensus 99 ~~L~~L~L~~n~l~~~-~p~~~-~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~ 175 (669)
.+|++||+++...... =|..+ .-||+|+.|.+++-.+... .-....++++|..||+++.+++.. ..+++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5677777777553211 12222 2467777777777555421 122344677777778777776533 56777888887
Q ss_pred EEcccCCCcc-cCCccccCCCCCCEEEccCCCCCCCC------CccccCCCCCcEEEcccCCCccccchhhhccCCCCCe
Q 040540 176 LGLWSCNLQG-QIPTEIGSLQNLKNLDLADNKLSGLI------PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEY 248 (669)
Q Consensus 176 L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~------p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 248 (669)
|.+.+-.+.. ..-..+..|++|+.||+|........ -+.-..+++|+.||.|++.+.+.+-+.+-..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7776555542 11124567888888888876654321 1112347889999999888776555544433444544
Q ss_pred e
Q 040540 249 L 249 (669)
Q Consensus 249 L 249 (669)
+
T Consensus 280 i 280 (699)
T KOG3665|consen 280 I 280 (699)
T ss_pred h
Confidence 4
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00016 Score=81.93 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=90.2
Q ss_pred ccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc-----
Q 040540 463 NLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV----- 537 (669)
Q Consensus 463 niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~----- 537 (669)
.+..+..+....+.-.+|+||.+.|+|-+++- ....++|.-.+.++.++++-++.||. .+|||+|+|+..
T Consensus 755 ~~~~~~~a~~~~~~S~lv~ey~~~Gtlld~~N-~~~~m~e~lv~~~~~qml~ive~lH~----~~IIHgDiKPDNfll~~ 829 (974)
T KOG1166|consen 755 SIMHISSAHVFQNASVLVSEYSPYGTLLDLIN-TNKVMDEYLVMFFSCQMLRIVEHLHA----MGIIHGDIKPDNFLLRR 829 (974)
T ss_pred chHHHHHHHccCCcceeeeeccccccHHHhhc-cCCCCCchhhhHHHHHHHHHHHHHHh----cceecccCCcceeEeec
Confidence 34444455555677789999999999999997 45568999899999999999999994 479999999531
Q ss_pred -----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 538 -----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 538 -----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
.-....+|-.+--+|+..++..+..+|-|.++-+++-|+-|+.
T Consensus 830 ~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y 901 (974)
T KOG1166|consen 830 EICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY 901 (974)
T ss_pred ccCCCCcccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 1111235666777899999999999999999999999999973
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00012 Score=80.68 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=65.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|...+..++|++++....++......++||||+++++|.+++. .+..++.++++++.|+|. .+
T Consensus 382 ~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~---------~~~~~~~~i~~~L~~lH~----~g 448 (535)
T PRK09605 382 RTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE---------GNPELVRKVGEIVAKLHK----AG 448 (535)
T ss_pred HHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH---------HHHHHHHHHHHHHHHHHh----CC
Confidence 46678999999999998877766666667789999999999999885 356789999999999995 47
Q ss_pred eeecCCCCcc
Q 040540 528 IIHCEGEDSV 537 (669)
Q Consensus 528 i~h~d~~~~~ 537 (669)
++|+|+|+..
T Consensus 449 iiHrDlkp~N 458 (535)
T PRK09605 449 IVHGDLTTSN 458 (535)
T ss_pred CccCCCChHH
Confidence 9999999764
|
|
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00014 Score=69.68 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=65.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..+.|+++.....++......+++|||+++++|.+++... .+ .+..++.++++++.++|. .+
T Consensus 45 ~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~----~~-~~~~i~~~i~~~l~~lH~----~~ 115 (211)
T PRK14879 45 RTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSN----GM-EELELSREIGRLVGKLHS----AG 115 (211)
T ss_pred HHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhc----cH-HHHHHHHHHHHHHHHHHh----CC
Confidence 3556888888888888876666666667778999999999999998642 22 788899999999999995 47
Q ss_pred eeecCCCCcc
Q 040540 528 IIHCEGEDSV 537 (669)
Q Consensus 528 i~h~d~~~~~ 537 (669)
++|+|+++..
T Consensus 116 i~H~Dl~p~N 125 (211)
T PRK14879 116 IIHGDLTTSN 125 (211)
T ss_pred cccCCCCccc
Confidence 9999999764
|
|
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00022 Score=67.07 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=58.3
Q ss_pred chhhhhhccccccccceeccccccccccceeeccCCCCChHHh-hhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKW-LYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~-l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
..|...+.++.|+++.....+... ..++||||++++++... +.. ..++..+...++.+++.++.++|+. .++
T Consensus 67 ~~E~~~l~~l~~~~i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~--~~~~~~~~~~i~~~l~~~l~~lH~~---~gi 139 (190)
T cd05145 67 EKEFRNLKRLYEAGVPVPEPILLK--KNVLVMEFIGDDGSPAPRLKD--VPLEEEEAEELYEQVVEQMRRLYQE---AGL 139 (190)
T ss_pred HHHHHHHHHHHhCCCCCceEEEec--CCEEEEEEecCCCchhhhhhh--ccCCHHHHHHHHHHHHHHHHHHHHh---CCE
Confidence 357778888888876433322221 24799999998755443 432 3467778889999999999999962 489
Q ss_pred eecCCCCcc
Q 040540 529 IHCEGEDSV 537 (669)
Q Consensus 529 ~h~d~~~~~ 537 (669)
+|+|+|+..
T Consensus 140 vHrDlkP~N 148 (190)
T cd05145 140 VHGDLSEYN 148 (190)
T ss_pred ecCCCChhh
Confidence 999999764
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00037 Score=63.24 Aligned_cols=84 Identities=23% Similarity=0.197 Sum_probs=37.0
Q ss_pred CCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccC-CccccCCCCCCEEEccCCCCCCC---CCccccCCCC
Q 040540 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQI-PTEIGSLQNLKNLDLADNKLSGL---IPPTIFNIST 220 (669)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~---~p~~~~~l~~ 220 (669)
.+++|.+|.+++|.++..-|.--.-+++|..|.+.+|++...- -.-+..+++|++|.+-+|..+.. --..+..+++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 3334444444444443333332223344444555554443110 01134556666666666655432 1223445556
Q ss_pred CcEEEccc
Q 040540 221 MRILTLES 228 (669)
Q Consensus 221 L~~L~l~~ 228 (669)
|+.||++.
T Consensus 142 l~~LDF~k 149 (233)
T KOG1644|consen 142 LRTLDFQK 149 (233)
T ss_pred ceEeehhh
Confidence 66665544
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00016 Score=67.18 Aligned_cols=130 Identities=19% Similarity=0.167 Sum_probs=92.8
Q ss_pred hhhhhccccc-cccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeee
Q 040540 452 ECEVLRNVRH-RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH 530 (669)
Q Consensus 452 e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h 530 (669)
|..+-+.+++ ..+..+..+.....+-.+|||.. +-+|.++..--....+..+.+-.+-|+..-++|+|. +..||
T Consensus 60 EskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~----r~fiH 134 (341)
T KOG1163|consen 60 ESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHL----RNFIH 134 (341)
T ss_pred HHHHHHHhccCCCCchhhhhccccccceeeeecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHh----hcccc
Confidence 4444444443 23333444556677788999977 568888876444456777888888999999999994 47999
Q ss_pred cCCCCcc-----------------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 531 CEGEDSV-----------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 531 ~d~~~~~-----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
||+|+.. ......||..|.+-....+..-+.+.|.=|+|-++.-.
T Consensus 135 RDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYf 214 (341)
T KOG1163|consen 135 RDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYF 214 (341)
T ss_pred ccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeee
Confidence 9999641 11122488888765544444456789999999999999
Q ss_pred HhCCCCCCcCC
Q 040540 576 FTRKRPTDEMF 586 (669)
Q Consensus 576 ~tg~~p~~~~~ 586 (669)
--|+.||.+..
T Consensus 215 nrG~LPWQglk 225 (341)
T KOG1163|consen 215 NRGSLPWQGLK 225 (341)
T ss_pred ecCCCcccccc
Confidence 99999998754
|
|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00016 Score=68.57 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=60.6
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+++.....++......+++|||+++++|.+++..... .++.++++++.++|. .+
T Consensus 43 ~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~~--------~~~~~i~~~l~~lH~----~g 110 (199)
T TIGR03724 43 RTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGND--------ELLREIGRLVGKLHK----AG 110 (199)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhcHH--------HHHHHHHHHHHHHHH----CC
Confidence 455788888888887765544455556667899999999999998864211 788999999999994 48
Q ss_pred eeecCCCCcc
Q 040540 528 IIHCEGEDSV 537 (669)
Q Consensus 528 i~h~d~~~~~ 537 (669)
++|+|+++..
T Consensus 111 i~H~Dl~~~N 120 (199)
T TIGR03724 111 IVHGDLTTSN 120 (199)
T ss_pred eecCCCCcce
Confidence 9999999753
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0006 Score=66.51 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=93.5
Q ss_pred cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCc---
Q 040540 460 RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDS--- 536 (669)
Q Consensus 460 ~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~--- 536 (669)
..+.|...+.+-....+-.+|+|.. +-+|.++..-.+..++..+.+.||+|...-++|+|.. .+|-||+|+.
T Consensus 82 g~~GIP~vYYFGqeG~~NiLVidLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k----~LIYRDIKPdNFL 156 (449)
T KOG1165|consen 82 GTEGIPQVYYFGQEGKYNILVIDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEK----DLIYRDIKPDNFL 156 (449)
T ss_pred CCCCCCceeeeccccchhhhhhhhh-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhc----ceeecccCcccee
Confidence 3455555555555566667999977 4678777654556688889999999999999999954 6888998853
Q ss_pred ----------------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 537 ----------------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 537 ----------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
-...+..||..||.=....++.-+.+.|.=|+|=+.+-.+-|..||
T Consensus 157 IGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPW 236 (449)
T KOG1165|consen 157 IGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPW 236 (449)
T ss_pred ecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcc
Confidence 1123335899999877777777788999999999999999999999
Q ss_pred CcC
Q 040540 583 DEM 585 (669)
Q Consensus 583 ~~~ 585 (669)
.+.
T Consensus 237 QGL 239 (449)
T KOG1165|consen 237 QGL 239 (449)
T ss_pred ccc
Confidence 864
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00061 Score=72.91 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=80.7
Q ss_pred hhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeee
Q 040540 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH 530 (669)
Q Consensus 451 ~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h 530 (669)
+.+.-++.++||||++++.........|+|.|-+. .|..++.+. ......-.+.||++||.|||+. ..++|
T Consensus 58 ~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l----~~~~v~~Gl~qIl~AL~FL~~d---~~lvH 128 (690)
T KOG1243|consen 58 RAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKEL----GKEEVCLGLFQILAALSFLNDD---CNLVH 128 (690)
T ss_pred HHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHh----HHHHHHHHHHHHHHHHHHHhcc---CCeee
Confidence 44667888999999999999998889999999873 677777653 2344455678999999999864 57899
Q ss_pred cCCCCcccc-c--c--cccccc--------------------cCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 531 CEGEDSVTQ-T--T--TMATIG--------------------YMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 531 ~d~~~~~~~-~--~--~~gt~~--------------------y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.++.-.... + . ..|... |..|+.+... +...|-|-||++++|++.|.
T Consensus 129 gNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s--~~s~D~~~Lg~li~el~ng~ 200 (690)
T KOG1243|consen 129 GNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPS--EWSIDSWGLGCLIEELFNGS 200 (690)
T ss_pred ccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCcc--ccchhhhhHHHHHHHHhCcc
Confidence 886532100 0 0 012222 2233322211 13469999999999999994
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00012 Score=81.76 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=48.5
Q ss_pred ccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccc-cCccccCCCCCCCEEEccCCccccCCCCCcccccccc
Q 040540 241 HSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSG-HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319 (669)
Q Consensus 241 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 319 (669)
.++++|..||+|+.+++.. ..++++++|+.|.+.+=.+.. ..-..+.+|++|++||++.......... ...++..
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~i--i~qYlec 245 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKI--IEQYLEC 245 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHH--HHHHHHh
Confidence 3556666666666555422 344555555555544333221 1112345667777777766544333211 1122333
Q ss_pred cCCCCCCCEEECcCCCCccc
Q 040540 320 LTNCRNLSNLALASNPLGGI 339 (669)
Q Consensus 320 l~~l~~L~~L~l~~n~l~~~ 339 (669)
-..+|+|+.||.+++.+...
T Consensus 246 ~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred cccCccccEEecCCcchhHH
Confidence 44567777777777665543
|
|
| >KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00059 Score=72.11 Aligned_cols=126 Identities=18% Similarity=0.170 Sum_probs=93.9
Q ss_pred hhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHh----hhhhhhcCCCCC
Q 040540 452 ECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGS----ALEYLRHGHSSA 526 (669)
Q Consensus 452 e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~----~l~~lh~~~~~~ 526 (669)
|.....++ .|++.++........+..++-.|++. .++.++-+.....++.....++..+..+ |+..+|. .
T Consensus 167 ~~~s~~~i~~~~~~v~~~~~~e~~~~lfiqtE~~~-~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs----~ 241 (524)
T KOG0601|consen 167 EFLSHHKIDSHENPVRDSPAWEGSGILFIQTELCG-ESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHS----N 241 (524)
T ss_pred hhhcccccCccccccccCcccccCCcceeeecccc-chhHHhhhcccccCCchhhhhHHhhhhhcccccccccCC----C
Confidence 44444444 48888887777777888888888886 7888888776666777777888888877 9999984 4
Q ss_pred CeeecCCCCc-------------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 527 PIIHCEGEDS-------------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.++|.|+++. .......|...|++||...+ .++.++|+|++|.+..|.
T Consensus 242 ~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~ 320 (524)
T KOG0601|consen 242 NIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEA 320 (524)
T ss_pred cccccccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhh
Confidence 7888776632 00111146778999997754 478899999999999999
Q ss_pred HhCCCCCC
Q 040540 576 FTRKRPTD 583 (669)
Q Consensus 576 ~tg~~p~~ 583 (669)
.+|..+..
T Consensus 321 ~l~~~~~~ 328 (524)
T KOG0601|consen 321 ILGSHLPS 328 (524)
T ss_pred Hhhccccc
Confidence 99876543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00046 Score=62.59 Aligned_cols=80 Identities=23% Similarity=0.154 Sum_probs=35.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccC-CccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF-PSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~ 132 (669)
..+||+.|.+... ..|..++.|.+|.|++|+|+.+.|.--..+++|+.|.|.+|.|...- -+.+..+++|++|.+-+
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3455555554321 12444455555555555555444443334444555555555543110 01233344444444444
Q ss_pred cCc
Q 040540 133 NNF 135 (669)
Q Consensus 133 n~l 135 (669)
|..
T Consensus 123 Npv 125 (233)
T KOG1644|consen 123 NPV 125 (233)
T ss_pred Cch
Confidence 443
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.00088 Score=71.23 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=93.0
Q ss_pred Cchhhhhhccccccc-cceeccccccccccceeeccCCCC-ChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 449 FDSECEVLRNVRHRN-LIKIISSCSNPDFKALVLEFMPNG-SLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 449 ~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ey~~~g-~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
...+++++.++.||| .+..++.+....+.+++++|+..| +-....-.....+...+-..+.+...++++++|..
T Consensus 280 ~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~~---- 355 (829)
T KOG0576|consen 280 RRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELHSS---- 355 (829)
T ss_pred hHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCccccccCChhhHhhhhhhhhhhhhhhcccccccccc----
Confidence 345788899999999 777778888888899999999877 22222211112233334445566677899999854
Q ss_pred CeeecC---CC----------------CcccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 527 PIIHCE---GE----------------DSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 527 ~i~h~d---~~----------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
.-+|+| .. +.....+..+|+.|+|||+.....+..+.|+|+.|+-..+|..|-.|-.
T Consensus 356 ~~~~~d~~l~s~~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~ 431 (829)
T KOG0576|consen 356 YKVHRDNILGSEEEVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRS 431 (829)
T ss_pred cccCcccccccccccccccccCCcccCcccccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCC
Confidence 235664 11 0122445679999999999999999999999999998888888877743
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0012 Score=62.58 Aligned_cols=62 Identities=24% Similarity=0.323 Sum_probs=27.9
Q ss_pred CCCCCCeeecccc--cccccCCcccCCCCCCCEEEcccCCCcccCCcc---ccCCCCCCEEEccCCCCC
Q 040540 145 NLSRLEMLRAEFN--IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTE---IGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 145 ~l~~L~~L~l~~n--~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~---~~~l~~L~~L~l~~N~l~ 208 (669)
.|++|+.|.++.| ...+.++-....+++|++|++++|++.. +.. +..+.+|..||+.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 3444444444444 3333333333344555555555555531 111 234445555555555544
|
|
| >COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.022 Score=57.86 Aligned_cols=162 Identities=13% Similarity=0.075 Sum_probs=94.6
Q ss_pred ccCHHHHHHHHHhHHhhhhhhhcCCCCCC-------eeecCCC------Cc-------ccccccccccccCcccccc---
Q 040540 499 FLDILERLNIMIDVGSALEYLRHGHSSAP-------IIHCEGE------DS-------VTQTTTMATIGYMAPEYGS--- 555 (669)
Q Consensus 499 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~-------i~h~d~~------~~-------~~~~~~~gt~~y~aPE~~~--- 555 (669)
...|.-.+++++.+|.+.+-||..+-..+ .+..|.+ ++ ......+|...|.+||...
T Consensus 113 ~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ~~~s 192 (637)
T COG4248 113 HCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQTLPS 192 (637)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEcccceeeccCCceEecccCccccCCHHHhcccc
Confidence 46789999999999999999995432211 1111111 11 1122336889999999654
Q ss_pred --CCCcCccccchhhHHHHHHHHhC-CCCCCcCCCC---CccHHHHHH-HhCCCCccccccccccchhhhhhhhHHHHHH
Q 040540 556 --EGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTG---EMSLRRWVK-ESLPHRLSEVVDTNLVREEQAFSAKMDCLLS 628 (669)
Q Consensus 556 --~~~~~~~~Dv~s~Gvil~el~tg-~~p~~~~~~~---~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (669)
+..-+...|-|.+||++|+++-| +.||++.... ...+-.-+. ..+..... -.+... ..++...+.-...+
T Consensus 193 f~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~--~~~g~~-p~P~~~P~~~Lpp~ 269 (637)
T COG4248 193 FVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASD--QRRGLK-PPPRSIPLSMLPPD 269 (637)
T ss_pred ccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechh--ccCCCC-CCCCCCChhhcCHH
Confidence 22245678999999999999887 9999763311 111100000 00000000 000000 01111223344456
Q ss_pred HHHHHhhcccCC--CCCCCCHHHHHHHHHHhHHHhhh
Q 040540 629 IMDLALDCCMES--PDKRMHMTDAAAKLKKIKVKFLD 663 (669)
Q Consensus 629 ~~~l~~~c~~~~--P~~Rps~~~v~~~l~~~~~~~~~ 663 (669)
+.-+..+|+... |.-||+++..+..|..+.+.+.+
T Consensus 270 vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~L~~ 306 (637)
T COG4248 270 VQALFQQAFTESGVATPRPTAKAWVAALDALRQQLKK 306 (637)
T ss_pred HHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 777788888654 56899999999999998887654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0015 Score=61.90 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=35.9
Q ss_pred CCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCC--cCCccCCccccCCcccccccccccCcc
Q 040540 74 LSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYN--KLSGSFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 74 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
+..|+.|++.+..++.. ..|..|++|+.|.++.| ++++.++-....+++|++|+|++|+++
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33444444555444311 23556677777777777 555555555555677777777777765
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0026 Score=61.94 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=55.9
Q ss_pred Cchhhhhhccccccc--cceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 449 FDSECEVLRNVRHRN--LIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 449 ~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+..|...+..+.+.. +.+.+.. ...++||||++++++..+.... ......+...++.+++.+++++|..
T Consensus 97 ~~~E~~~L~~L~~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---- 167 (237)
T smart00090 97 AEKEFRNLQRLYEAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKD-VEPEEEEEFELYDDILEEMRKLYKE---- 167 (237)
T ss_pred HHHHHHHHHHHHhcCCCCCeeeEe----cCceEEEEEecCCccccccccc-CCcchHHHHHHHHHHHHHHHHHHhc----
Confidence 446777787776532 2233322 2347999999998887765322 3345556678999999999999954
Q ss_pred C-eeecCCCCcc
Q 040540 527 P-IIHCEGEDSV 537 (669)
Q Consensus 527 ~-i~h~d~~~~~ 537 (669)
+ ++|+|+++..
T Consensus 168 g~iiH~Dikp~N 179 (237)
T smart00090 168 GELVHGDLSEYN 179 (237)
T ss_pred CCEEeCCCChhh
Confidence 6 9999999763
|
|
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0032 Score=56.21 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=64.0
Q ss_pred cCchhhhhhccccc--cccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVRH--RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|...+..+++ ..+.+++++....+..+++|||++++.+..+ +......++.+++++++++|.. ..
T Consensus 37 ~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~--------~~~~~~~~~~~~~~~l~~lh~~-~~ 107 (155)
T cd05120 37 DREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLDEV--------SEEEKEDIAEQLAELLAKLHQL-PL 107 (155)
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeecccC--------CHHHHHHHHHHHHHHHHHHhCC-Cc
Confidence 46678888888876 4778888877777788999999998766544 5566778889999999999964 23
Q ss_pred CCeeecCCCCcc
Q 040540 526 APIIHCEGEDSV 537 (669)
Q Consensus 526 ~~i~h~d~~~~~ 537 (669)
.+++|+|+++..
T Consensus 108 ~~i~H~Dl~~~N 119 (155)
T cd05120 108 LVLCHGDLHPGN 119 (155)
T ss_pred eEEEecCCCcce
Confidence 579999999764
|
The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0096 Score=51.77 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=29.5
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLE 150 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 150 (669)
|.+.++|+.+.+.. .+.......|.++++|+.+.+..+ +...-...|.+.++|+.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44445555555543 343333444555555555555443 3322233445554555555543 22222222333344444
Q ss_pred eeec
Q 040540 151 MLRA 154 (669)
Q Consensus 151 ~L~l 154 (669)
.+.+
T Consensus 85 ~i~~ 88 (129)
T PF13306_consen 85 NIDI 88 (129)
T ss_dssp EEEE
T ss_pred cccc
Confidence 4444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 669 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 3e-37 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 3e-37 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-15 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-11 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-06 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 1e-13 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 5e-13 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 5e-12 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 5e-12 | ||
| 4e6d_A | 298 | Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W | 6e-09 | ||
| 3io7_A | 313 | 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel | 2e-08 | ||
| 3rvg_A | 303 | Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido | 2e-08 | ||
| 4f1m_A | 287 | Crystal Structure Of The G1179s Roco4 Kinase Domain | 2e-08 | ||
| 4e4m_A | 302 | Jak2 Kinase (Jh1 Domain) In Complex With Compound 3 | 2e-08 | ||
| 3q32_A | 301 | Structure Of Janus Kinase 2 With A Pyrrolotriazine | 2e-08 | ||
| 3lpb_A | 295 | Crystal Structure Of Jak2 Complexed With A Potent 2 | 2e-08 | ||
| 2b7a_A | 293 | The Structural Basis Of Janus Kinase 2 Inhibition B | 2e-08 | ||
| 3jy9_A | 311 | Janus Kinase 2 Inhibitors Length = 311 | 2e-08 | ||
| 3e62_A | 293 | Fragment Based Discovery Of Jak-2 Inhibitors Length | 2e-08 | ||
| 4hge_A | 300 | Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 | 2e-08 | ||
| 3tjc_A | 298 | Co-Crystal Structure Of Jak2 With Thienopyridine 8 | 2e-08 | ||
| 2w1i_A | 326 | Structure Determination Of Aurora Kinase In Complex | 2e-08 | ||
| 4aqc_A | 301 | Triazolopyridine-Based Inhibitor Of Janus Kinase 2 | 2e-08 | ||
| 3ugc_A | 295 | Structural Basis Of Jak2 Inhibition By The Type Ii | 2e-08 | ||
| 4bbe_A | 298 | Aminoalkylpyrimidine Inhibitor Complexes With Jak2 | 3e-08 | ||
| 2xa4_A | 298 | Inhibitors Of Jak2 Kinase Domain Length = 298 | 3e-08 | ||
| 4f0f_A | 287 | Crystal Structure Of The Roco4 Kinase Domain Bound | 5e-08 | ||
| 4f1o_A | 287 | Crystal Structure Of The L1180t Mutant Roco4 Kinase | 6e-08 | ||
| 3p86_A | 309 | Crystal Structure Of Ctr1 Kinase Domain Mutant D676 | 1e-07 | ||
| 2nry_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 3e-07 | ||
| 4gs6_A | 315 | Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz | 3e-07 | ||
| 2eva_A | 307 | Structural Basis For The Interaction Of Tak1 Kinase | 3e-07 | ||
| 3kmw_A | 271 | Crystal Structure Of The IlkALPHA-Parvin Core Compl | 3e-07 | ||
| 3ppz_A | 309 | Crystal Structure Of Ctr1 Kinase Domain In Complex | 4e-07 | ||
| 2nru_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 4e-07 | ||
| 2oib_A | 301 | Crystal Structure Of Irak4 Kinase Domain Apo Form L | 6e-07 | ||
| 3v5q_A | 297 | Discovery Of A Selective Trk Inhibitor With Efficac | 1e-06 | ||
| 3miy_A | 266 | X-Ray Crystal Structure Of Itk Complexed With Sunit | 2e-06 | ||
| 3qgw_A | 286 | Crystal Structure Of Itk Kinase Bound To An Inhibit | 2e-06 | ||
| 4hct_A | 269 | Crystal Structure Of Itk In Complex With Compound 5 | 2e-06 | ||
| 3cd3_A | 377 | Crystal Structure Of Phosphorylated Human Feline Sa | 3e-06 | ||
| 3v5j_A | 266 | Crystal Structure Of Interleukin-2 Inducible T-Cell | 3e-06 | ||
| 1sm2_A | 264 | Crystal Structure Of The Phosphorylated Interleukin | 3e-06 | ||
| 4eqm_A | 294 | Structural Analysis Of Staphylococcus Aureus Serine | 3e-06 | ||
| 3bkb_A | 377 | Crystal Structure Of Human Feline Sarcoma Viral Onc | 3e-06 | ||
| 3dtc_A | 271 | Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp | 5e-06 | ||
| 3t9t_A | 267 | Crystal Structure Of Btk Mutant (F435t,K596r) Compl | 5e-06 | ||
| 2qok_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 5e-06 | ||
| 3d7t_A | 269 | Structural Basis For The Recognition Of C-Src By It | 6e-06 | ||
| 2qol_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596:y | 1e-05 | ||
| 2qoo_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 1e-05 | ||
| 2qoi_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 1e-05 | ||
| 2qof_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f | 1e-05 | ||
| 2qod_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y602f | 1e-05 | ||
| 2gsf_A | 373 | The Human Epha3 Receptor Tyrosine Kinase And Juxtam | 1e-05 | ||
| 3fxx_A | 371 | Human Epha3 Kinase And Juxtamembrane Region Bound T | 1e-05 | ||
| 3dzq_A | 361 | Human Epha3 Kinase Domain In Complex With Inhibitor | 1e-05 | ||
| 3d7u_A | 263 | Structural Basis For The Recognition Of C-Src By It | 2e-05 | ||
| 3kul_B | 325 | Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep | 2e-05 | ||
| 3kul_A | 325 | Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep | 2e-05 | ||
| 1byg_A | 278 | Kinase Domain Of Human C-Terminal Src Kinase (Csk) | 2e-05 | ||
| 2qoc_A | 344 | Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp | 2e-05 | ||
| 2yjr_A | 342 | Structure Of F1174l Mutant Anaplastic Lymphoma Kina | 2e-05 | ||
| 4fnw_A | 327 | Crystal Structure Of The Apo F1174l Anaplastic Lymp | 2e-05 | ||
| 2xb7_A | 315 | Structure Of Human Anaplastic Lymphoma Kinase In Co | 3e-05 | ||
| 3eyg_A | 290 | Crystal Structures Of Jak1 And Jak2 Inhibitor Compl | 3e-05 | ||
| 2o8y_A | 298 | Apo Irak4 Kinase Domain Length = 298 | 3e-05 | ||
| 4e4l_A | 302 | Jak1 Kinase (Jh1 Domain) In Complex With Compound 3 | 3e-05 | ||
| 2xp2_A | 327 | Structure Of The Human Anaplastic Lymphoma Kinase I | 3e-05 | ||
| 1k9a_A | 450 | Crystal Structure Analysis Of Full-Length Carboxyl- | 3e-05 | ||
| 4dce_A | 333 | Crystal Structure Of Human Anaplastic Lymphoma Kina | 3e-05 | ||
| 4fnx_A | 327 | Crystal Structure Of The Apo R1275q Anaplastic Lymp | 3e-05 | ||
| 3aox_A | 344 | X-Ray Crystal Structure Of Human Anaplastic Lymphom | 3e-05 | ||
| 3lct_A | 344 | Crystal Structure Of The Anaplastic Lymphoma Kinase | 3e-05 | ||
| 4fnz_A | 327 | Crystal Structure Of Human Anaplastic Lymphoma Kina | 3e-05 | ||
| 3l9p_A | 367 | Crystal Structure Of The Anaplastic Lymphoma Kinase | 3e-05 | ||
| 4fob_A | 353 | Crystal Structure Of Human Anaplastic Lymphoma Kina | 4e-05 | ||
| 2yjs_A | 342 | Structure Of C1156y Mutant Anaplastic Lymphoma Kina | 4e-05 | ||
| 2qon_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 5e-05 | ||
| 1mqb_A | 333 | Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro | 5e-05 | ||
| 3gvu_A | 292 | The Crystal Structure Of Human Abl2 In Complex With | 5e-05 | ||
| 2qo7_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Dephos | 5e-05 | ||
| 2yfx_A | 327 | Structure Of L1196m Mutant Anaplastic Lymphoma Kina | 5e-05 | ||
| 2yhv_A | 342 | Structure Of L1196m Mutant Anaplastic Lymphoma Kina | 5e-05 | ||
| 3k54_A | 283 | Structures Of Human Bruton's Tyrosine Kinase In Act | 6e-05 | ||
| 1yvj_A | 290 | Crystal Structure Of The Jak3 Kinase Domain In Comp | 6e-05 | ||
| 2qob_A | 344 | Human Epha3 Kinase Domain, Base Structure Length = | 6e-05 | ||
| 3gen_A | 283 | The 1.6 A Crystal Structure Of Human Bruton's Tyros | 7e-05 | ||
| 4hvd_A | 314 | Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h | 8e-05 | ||
| 3lxk_A | 327 | Structural And Thermodynamic Characterization Of Th | 9e-05 | ||
| 3ocs_A | 271 | Crystal Structure Of Bruton's Tyrosine Kinase In Co | 1e-04 | ||
| 3pjc_A | 315 | Crystal Structure Of Jak3 Complexed With A Potent A | 1e-04 | ||
| 3pix_A | 274 | Crystal Structure Of Btk Kinase Domain Complexed Wi | 1e-04 | ||
| 3kmu_A | 271 | Crystal Structure Of The IlkALPHA-Parvin Core Compl | 1e-04 | ||
| 1k2p_A | 263 | Crystal Structure Of Bruton's Tyrosine Kinase Domai | 1e-04 | ||
| 3p08_A | 267 | Crystal Structure Of The Human Btk Kinase Domain Le | 1e-04 | ||
| 3oct_A | 265 | Crystal Structure Of Bruton's Tyrosine Kinase Mutan | 2e-04 | ||
| 3sxr_A | 268 | Crystal Structure Of Bmx Non-Receptor Tyrosine Kina | 2e-04 | ||
| 2v7a_A | 286 | Crystal Structure Of The T315i Abl Mutant In Comple | 2e-04 | ||
| 1jpa_A | 312 | Crystal Structure Of Unphosphorylated Ephb2 Recepto | 2e-04 | ||
| 2hen_A | 286 | Crystal Structure Of The Ephb2 Receptor Kinase Doma | 2e-04 | ||
| 3qrj_A | 277 | The Crystal Structure Of Human Abl1 Kinase Domain T | 2e-04 | ||
| 2rei_A | 318 | Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep | 3e-04 | ||
| 3dqw_A | 286 | C-Src Kinase Domain Thr338ile Mutant In Complex Wit | 3e-04 | ||
| 3dk7_A | 277 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 3e-04 | ||
| 3g6h_A | 286 | Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma | 3e-04 | ||
| 1opl_A | 537 | Structural Basis For The Auto-Inhibition Of C-Abl T | 4e-04 | ||
| 2fo0_A | 495 | Organization Of The Sh3-Sh2 Unit In Active And Inac | 4e-04 | ||
| 2gqg_A | 278 | X-Ray Crystal Structure Of Dasatinib (Bms-354825) B | 4e-04 | ||
| 2hel_A | 306 | Crystal Structure Of A Mutant Epha4 Kinase Domain ( | 4e-04 | ||
| 2y6m_A | 291 | Crystal Structure Of Epha4 Kinase Domain Length = 2 | 4e-04 | ||
| 2z60_A | 288 | Crystal Structure Of The T315i Mutant Of Abl Kinase | 4e-04 | ||
| 2xyu_A | 285 | Crystal Structure Of Epha4 Kinase Domain In Complex | 4e-04 | ||
| 3geq_A | 286 | Structural Basis For The Chemical Rescue Of Src Kin | 4e-04 | ||
| 3oy3_A | 284 | Crystal Structure Of Abl T315i Mutant Kinase Domain | 5e-04 | ||
| 3oez_A | 286 | Crystal Structure Of The L317i Mutant Of The Chicke | 5e-04 | ||
| 2h8h_A | 535 | Src Kinase In Complex With A Quinazoline Inhibitor | 5e-04 | ||
| 2hzi_A | 277 | Abl Kinase Domain In Complex With Pd180970 Length = | 5e-04 | ||
| 4aoj_A | 329 | Human Trka In Complex With The Inhibitor Az-23 Leng | 5e-04 | ||
| 3qri_A | 277 | The Crystal Structure Of Human Abl1 Kinase Domain I | 6e-04 | ||
| 1yi6_A | 276 | C-Term Tail Segment Of Human Tyrosine Kinase (258-5 | 6e-04 | ||
| 2e2b_A | 293 | Crystal Structure Of The C-Abl Kinase Domain In Com | 6e-04 | ||
| 2hz0_A | 270 | Abl Kinase Domain In Complex With Nvp-Aeg082 Length | 6e-04 | ||
| 2f4j_A | 287 | Structure Of The Kinase Domain Of An Imatinib-Resis | 6e-04 | ||
| 2hyy_A | 273 | Human Abl Kinase Domain In Complex With Imatinib (S | 6e-04 | ||
| 1opk_A | 495 | Structural Basis For The Auto-Inhibition Of C-Abl T | 6e-04 | ||
| 2ptk_A | 453 | Chicken Src Tyrosine Kinase Length = 453 | 6e-04 | ||
| 2vwu_A | 302 | Ephb4 Kinase Domain Inhibitor Complex Length = 302 | 6e-04 | ||
| 3pyy_A | 298 | Discovery And Characterization Of A Cell-Permeable, | 6e-04 | ||
| 2g2f_A | 287 | A Src-Like Inactive Conformation In The Abl Tyrosin | 6e-04 | ||
| 3tt0_A | 382 | Co-Structure Of Fibroblast Growth Factor Receptor 1 | 6e-04 | ||
| 3dk6_A | 293 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 7e-04 | ||
| 2g1t_A | 287 | A Src-Like Inactive Conformation In The Abl Tyrosin | 7e-04 | ||
| 3js2_A | 317 | Crystal Structure Of Minimal Kinase Domain Of Fibro | 7e-04 | ||
| 1fmk_A | 452 | Crystal Structure Of Human Tyrosine-Protein Kinase | 7e-04 | ||
| 1y57_A | 452 | Structure Of Unphosphorylated C-Src In Complex With | 7e-04 | ||
| 3rhx_B | 306 | Crystal Structure Of The Catalytic Domain Of Fgfr1 | 7e-04 | ||
| 3kxx_A | 317 | Structure Of The Mutant Fibroblast Growth Factor Re | 7e-04 | ||
| 2hiw_A | 287 | Crystal Structure Of Inactive Conformation Abl Kina | 7e-04 | ||
| 1fgk_A | 310 | Crystal Structure Of The Tyrosine Kinase Domain Of | 7e-04 | ||
| 4f63_A | 309 | Crystal Structure Of Human Fibroblast Growth Factor | 7e-04 | ||
| 4f0i_A | 300 | Crystal Structure Of Apo Trka Length = 300 | 8e-04 | ||
| 2oiq_A | 286 | Crystal Structure Of Chicken C-Src Kinase Domain In | 8e-04 | ||
| 3u4w_A | 275 | Src In Complex With Dna-Templated Macrocyclic Inhib | 8e-04 | ||
| 2r2p_A | 295 | Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep | 8e-04 | ||
| 2bdf_A | 279 | Src Kinase In Complex With Inhibitor Ap23451 Length | 8e-04 | ||
| 3orm_A | 311 | Mycobacterium Tuberculosis Pknb Kinase Domain D76a | 8e-04 | ||
| 1mru_A | 311 | Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob | 8e-04 | ||
| 4gt5_A | 306 | Crystal Structure Of The Inactive Trka Kinase Domai | 9e-04 | ||
| 1fpu_A | 293 | Crystal Structure Of Abl Kinase Domain In Complex W | 9e-04 | ||
| 3ori_A | 311 | Mycobacterium Tuberculosis Pknb Kinase Domain L33d | 9e-04 | ||
| 3svv_A | 286 | Crystal Structure Of T338c C-Src Covalently Bound T | 9e-04 | ||
| 3f61_A | 311 | Crystal Structure Of M. Tuberculosis Pknb Leu33aspV | 9e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298 | Back alignment and structure |
|
| >pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313 | Back alignment and structure |
|
| >pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287 | Back alignment and structure |
|
| >pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302 | Back alignment and structure |
|
| >pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301 | Back alignment and structure |
|
| >pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295 | Back alignment and structure |
|
| >pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293 | Back alignment and structure |
|
| >pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311 | Back alignment and structure |
|
| >pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293 | Back alignment and structure |
|
| >pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300 | Back alignment and structure |
|
| >pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298 | Back alignment and structure |
|
| >pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326 | Back alignment and structure |
|
| >pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301 | Back alignment and structure |
|
| >pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295 | Back alignment and structure |
|
| >pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298 | Back alignment and structure |
|
| >pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287 | Back alignment and structure |
|
| >pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287 | Back alignment and structure |
|
| >pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315 | Back alignment and structure |
|
| >pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307 | Back alignment and structure |
|
| >pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271 | Back alignment and structure |
|
| >pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301 | Back alignment and structure |
|
| >pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297 | Back alignment and structure |
|
| >pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266 | Back alignment and structure |
|
| >pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269 | Back alignment and structure |
|
| >pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377 | Back alignment and structure |
|
| >pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266 | Back alignment and structure |
|
| >pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264 | Back alignment and structure |
|
| >pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294 | Back alignment and structure |
|
| >pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377 | Back alignment and structure |
|
| >pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271 | Back alignment and structure |
|
| >pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267 | Back alignment and structure |
|
| >pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269 | Back alignment and structure |
|
| >pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373 | Back alignment and structure |
|
| >pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371 | Back alignment and structure |
|
| >pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361 | Back alignment and structure |
|
| >pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263 | Back alignment and structure |
|
| >pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325 | Back alignment and structure |
|
| >pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325 | Back alignment and structure |
|
| >pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278 | Back alignment and structure |
|
| >pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344 | Back alignment and structure |
|
| >pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342 | Back alignment and structure |
|
| >pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327 | Back alignment and structure |
|
| >pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315 | Back alignment and structure |
|
| >pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290 | Back alignment and structure |
|
| >pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302 | Back alignment and structure |
|
| >pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327 | Back alignment and structure |
|
| >pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450 | Back alignment and structure |
|
| >pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333 | Back alignment and structure |
|
| >pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327 | Back alignment and structure |
|
| >pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344 | Back alignment and structure |
|
| >pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344 | Back alignment and structure |
|
| >pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327 | Back alignment and structure |
|
| >pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367 | Back alignment and structure |
|
| >pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353 | Back alignment and structure |
|
| >pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342 | Back alignment and structure |
|
| >pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333 | Back alignment and structure |
|
| >pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292 | Back alignment and structure |
|
| >pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373 | Back alignment and structure |
|
| >pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327 | Back alignment and structure |
|
| >pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342 | Back alignment and structure |
|
| >pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283 | Back alignment and structure |
|
| >pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290 | Back alignment and structure |
|
| >pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344 | Back alignment and structure |
|
| >pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283 | Back alignment and structure |
|
| >pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314 | Back alignment and structure |
|
| >pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327 | Back alignment and structure |
|
| >pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271 | Back alignment and structure |
|
| >pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315 | Back alignment and structure |
|
| >pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274 | Back alignment and structure |
|
| >pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271 | Back alignment and structure |
|
| >pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263 | Back alignment and structure |
|
| >pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267 | Back alignment and structure |
|
| >pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265 | Back alignment and structure |
|
| >pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268 | Back alignment and structure |
|
| >pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286 | Back alignment and structure |
|
| >pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312 | Back alignment and structure |
|
| >pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286 | Back alignment and structure |
|
| >pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277 | Back alignment and structure |
|
| >pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318 | Back alignment and structure |
|
| >pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286 | Back alignment and structure |
|
| >pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277 | Back alignment and structure |
|
| >pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286 | Back alignment and structure |
|
| >pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537 | Back alignment and structure |
|
| >pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278 | Back alignment and structure |
|
| >pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306 | Back alignment and structure |
|
| >pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291 | Back alignment and structure |
|
| >pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288 | Back alignment and structure |
|
| >pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285 | Back alignment and structure |
|
| >pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286 | Back alignment and structure |
|
| >pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284 | Back alignment and structure |
|
| >pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286 | Back alignment and structure |
|
| >pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535 | Back alignment and structure |
|
| >pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277 | Back alignment and structure |
|
| >pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329 | Back alignment and structure |
|
| >pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277 | Back alignment and structure |
|
| >pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276 | Back alignment and structure |
|
| >pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293 | Back alignment and structure |
|
| >pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270 | Back alignment and structure |
|
| >pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287 | Back alignment and structure |
|
| >pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273 | Back alignment and structure |
|
| >pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495 | Back alignment and structure |
|
| >pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453 | Back alignment and structure |
|
| >pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302 | Back alignment and structure |
|
| >pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298 | Back alignment and structure |
|
| >pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287 | Back alignment and structure |
|
| >pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382 | Back alignment and structure |
|
| >pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293 | Back alignment and structure |
|
| >pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287 | Back alignment and structure |
|
| >pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317 | Back alignment and structure |
|
| >pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452 | Back alignment and structure |
|
| >pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452 | Back alignment and structure |
|
| >pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306 | Back alignment and structure |
|
| >pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317 | Back alignment and structure |
|
| >pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287 | Back alignment and structure |
|
| >pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310 | Back alignment and structure |
|
| >pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309 | Back alignment and structure |
|
| >pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300 | Back alignment and structure |
|
| >pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286 | Back alignment and structure |
|
| >pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275 | Back alignment and structure |
|
| >pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295 | Back alignment and structure |
|
| >pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279 | Back alignment and structure |
|
| >pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311 | Back alignment and structure |
|
| >pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311 | Back alignment and structure |
|
| >pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306 | Back alignment and structure |
|
| >pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293 | Back alignment and structure |
|
| >pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311 | Back alignment and structure |
|
| >pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286 | Back alignment and structure |
|
| >pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 669 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-103 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-102 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 4e-86 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 2e-13 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 7e-08 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 2e-05 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 1e-74 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 5e-64 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 1e-33 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 9e-68 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-61 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-51 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-28 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 6e-62 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-49 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-47 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-41 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 7e-09 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 2e-61 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 2e-60 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 5e-60 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 4e-33 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 6e-11 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-58 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 5e-58 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-57 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-46 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 1e-37 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 1e-24 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 4e-47 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 4e-45 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 5e-36 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-34 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 6e-13 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 4e-44 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 4e-43 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 4e-40 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 1e-39 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 2e-29 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 3e-26 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 9e-21 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 4e-43 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 5e-41 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 3e-40 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 7e-41 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 3e-27 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 1e-40 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 3e-39 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 1e-29 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 5e-16 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 2e-12 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-40 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 5e-40 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-36 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 5e-40 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 6e-38 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 7e-37 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 6e-35 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-33 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-22 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 4e-35 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 5e-34 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 2e-27 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 7e-34 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 4e-32 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 2e-29 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 2e-25 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 3e-16 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 9e-34 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 3e-31 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 5e-28 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 6e-26 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 4e-20 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 1e-33 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 1e-32 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 2e-29 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-33 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 8e-33 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 8e-30 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 4e-33 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 7e-33 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 4e-29 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 3e-24 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 8e-32 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 2e-31 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 3e-31 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 3e-31 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 2e-30 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 5e-22 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 3e-17 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 5e-31 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 5e-31 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-25 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 2e-24 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 2e-30 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 2e-30 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 2e-29 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 2e-29 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 4e-28 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 2e-27 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 2e-27 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 5e-20 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 2e-14 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 8e-26 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 7e-24 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 8e-24 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 8e-16 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 1e-13 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 2e-25 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 2e-24 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 2e-21 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 4e-18 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 8e-25 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 5e-23 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 2e-21 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 1e-18 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 2e-24 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 2e-24 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 3e-22 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 3e-20 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 9e-19 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 4e-24 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 9e-23 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 1e-19 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 1e-14 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 2e-14 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 1e-23 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 8e-21 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 9e-18 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 8e-14 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-23 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 8e-23 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 7e-20 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-18 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 2e-23 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 2e-22 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 2e-22 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 1e-20 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 1e-14 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 1e-11 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 3e-06 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 6e-22 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 6e-22 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 7e-12 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 8e-12 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 9e-22 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 1e-21 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 8e-15 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-11 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-11 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 3e-21 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 2e-20 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 8e-19 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 1e-18 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 1e-13 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 6e-20 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 8e-19 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 9e-19 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 1e-17 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 3e-16 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 4e-16 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 6e-16 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 2e-17 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 1e-16 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 1e-14 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 2e-09 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 2e-05 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 3e-17 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 3e-17 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 6e-17 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 6e-17 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 1e-15 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 8e-15 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 2e-14 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 2e-12 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 1e-06 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 9e-17 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 1e-16 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 3e-16 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 3e-16 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 3e-16 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 4e-16 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 4e-16 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 2e-13 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 3e-13 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 4e-13 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 8e-13 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 2e-09 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 4e-16 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 5e-16 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 8e-16 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 8e-16 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 9e-16 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 1e-15 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 3e-15 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 2e-12 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 1e-15 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 1e-15 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 1e-15 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 1e-15 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 1e-15 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 2e-15 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 2e-15 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 2e-15 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 2e-12 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 7e-09 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 3e-08 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 3e-15 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 3e-15 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 4e-15 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 4e-15 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 4e-15 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 5e-15 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 5e-15 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 6e-15 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 2e-14 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 4e-08 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 7e-15 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 8e-15 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-13 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-13 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-07 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 6e-05 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 1e-14 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 1e-14 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 1e-14 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 1e-14 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 1e-14 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 1e-14 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 2e-14 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 2e-14 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 5e-14 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 3e-13 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 4e-09 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 6e-09 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 1e-06 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 4e-06 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 5e-06 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 4e-14 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 1e-13 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 4e-13 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 2e-11 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 3e-10 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 9e-10 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 7e-13 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 3e-10 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 3e-06 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 2e-12 | |
| 3v5q_A | 297 | NT-3 growth factor receptor; kinase domain, kinase | 2e-12 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 3e-12 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 9e-10 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 2e-06 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 2e-05 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 7e-12 | |
| 3zzw_A | 289 | Tyrosine-protein kinase transmembrane receptor RO; | 1e-11 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 2e-11 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 3e-11 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 5e-08 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 5e-06 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 1e-05 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 1e-05 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 3e-11 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 8e-09 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 3e-08 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 3e-11 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 5e-09 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 3e-08 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 2e-07 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 3e-11 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 5e-11 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 5e-11 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 6e-11 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 6e-11 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 6e-11 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 3e-09 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 7e-09 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 2e-07 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 3e-07 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 5e-04 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 6e-11 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 7e-11 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 5e-09 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 3e-06 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 2e-04 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 1e-10 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 1e-10 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 2e-10 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 2e-10 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 2e-10 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 2e-10 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 2e-10 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 3e-10 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 5e-10 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 1e-09 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 1e-09 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 6e-09 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 6e-09 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 1e-08 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 1e-08 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 1e-08 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 1e-08 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 2e-08 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 2e-08 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 8e-05 | |
| 4apc_A | 350 | Serine/threonine-protein kinase NEK1; transferase; | 7e-08 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 9e-08 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 1e-04 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 7e-04 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 9e-08 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 1e-07 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 1e-07 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 1e-07 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 1e-05 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 2e-07 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 2e-07 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 3e-07 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 7e-04 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 4e-07 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 5e-07 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 5e-07 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 5e-07 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 9e-06 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 2e-05 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 2e-05 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 1e-04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 6e-07 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 6e-07 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 7e-04 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 9e-07 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 1e-06 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 1e-06 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 1e-06 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 1e-06 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 1e-06 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 2e-06 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 2e-06 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 2e-06 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 2e-06 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 2e-06 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 2e-06 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 3e-06 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 3e-06 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 4e-06 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 4e-06 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 6e-06 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 4e-05 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 6e-06 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 6e-06 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 6e-06 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 7e-06 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 7e-06 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 7e-06 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 9e-06 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 9e-06 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 9e-06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 9e-06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 4e-04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 4e-04 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 9e-06 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 2e-04 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 2e-04 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 1e-05 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 1e-05 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 1e-05 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 1e-05 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 1e-05 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 2e-05 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 2e-05 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 3e-05 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 3e-05 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 4e-05 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 4e-05 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 5e-05 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 7e-05 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 7e-05 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 3e-04 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 9e-05 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-04 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 9e-05 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 1e-04 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 1e-04 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 1e-04 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 2e-04 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 2e-04 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 2e-04 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 2e-04 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 6e-04 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-04 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 4e-04 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 5e-04 | |
| 3pvu_A | 695 | Beta-adrenergic receptor kinase 1; transferase, se | 5e-04 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 6e-04 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 6e-04 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 6e-04 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 7e-04 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 330 bits (849), Expect = e-103
Identities = 123/458 (26%), Positives = 201/458 (43%), Gaps = 37/458 (8%)
Query: 2 TTLNDLTTDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDM 61
+ L + L++FK ++ L + WS + C++ G++C R +VT+++LS
Sbjct: 5 SPSQSLYREIHQLISFKDV-LPDKNLLPD-WSSNKNPCTFDGVTC--RDDKVTSIDLSSK 60
Query: 62 GL---GGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPS- 117
L + +L+ L SL +S ++ +G + L + L+ N LSG +
Sbjct: 61 PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTL 119
Query: 118 -WIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI---GNLRK 172
+G S L+ L + N P S L+ LE+L N I G +
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 173 LVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232
L +L + + G + + NL+ LD++ N S I P + + S ++ L + N+LS
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLS 236
Query: 233 GRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNT-FGNL 291
G I + ++ L +S+N +G IP L L L N F+G IP+ G
Sbjct: 237 GDFSRAIS-TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP-QLIGNFSAS 350
L+ L++ N+ + +C L +LAL+SN G LP +
Sbjct: 294 DTLTGLDLSGNHFYG--------AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-G 344
Query: 351 LQNIYAFELGFNDLNGTIPTSIGTL-QQLQGFYVPENNLQGYVPHDLCH--LERLNILNL 407
L+ + L FN+ +G +P S+ L L + NN G + +LC L L L
Sbjct: 345 LKVLD---LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 408 SGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLA 445
N +G IPP L++ + L LHL N LS +IPSSL
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-102
Identities = 119/408 (29%), Positives = 185/408 (45%), Gaps = 24/408 (5%)
Query: 44 ISCGSRHQRVTALNLSDMGLGGTIP---LHFGNLSFLVSLDISENNFHGHLPKELGQLRR 100
+S G + + L+LS + G + L L IS N G + + +
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201
Query: 101 LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIG 160
L + ++ N S P +G S L+ L + N +G ++ + L++L N
Sbjct: 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 161 GTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNIS 219
G IP L+ L L L G+IP + G+ L LDL+ N G +PP + S
Sbjct: 261 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 220 TMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNAT-KLIGLDLGFN 278
+ L L SN SG LP +R ++ L LS N G++P S+TN + L+ LDL N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 279 SFSGHIPNTFGN--LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
+FSG I L L + N T +L+NC L +L L+ N L
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFT--------GKIPPTLSNCSELVSLHLSFNYL 430
Query: 337 GGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDL 396
G +P +G+ S L+++ L N L G IP + ++ L+ + N+L G +P L
Sbjct: 431 SGTIPSSLGSLS-KLRDLK---LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 397 CHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444
+ LN ++LS N+L+G IP + L +L L L +N S +IP+ L
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 4e-86
Identities = 114/401 (28%), Positives = 170/401 (42%), Gaps = 45/401 (11%)
Query: 56 LNLSDMGLGGTIPLHFGN--LSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
L+LS G I + + L L + N F G +P L L + L++N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
+ PS +G LSKLR L+L N G IP L + LE L +FN + G IPS + N L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
+ L + L G+IP IG L+NL L L++N SG IP + + ++ L L +N +G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN--SFSGHIPNTFGNL 291
+P+ + ++ N + GK I N N F G L
Sbjct: 553 TIPAAMFKQS-----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASL 351
+ N+ G N
Sbjct: 608 STRNPCNITSRVYG--------------------------------GHTSPTFDN----N 631
Query: 352 QNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNK 411
++ ++ +N L+G IP IG++ L + N++ G +P ++ L LNIL+LS NK
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 412 LSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSE 452
L G IP +++LT L E+ L +N LS IP F +F
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 359 LGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP 418
N + +S+ +L L+ ++ +++ G V L L+LS N LSG +
Sbjct: 60 KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTT 118
Query: 419 --CLASLTSLRELHLGSNKLSSSIPSSLAFR 447
L S + L+ L++ SN L S +
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 386 NNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLA 445
N V L L L L LS + ++G + SL L L N LS + + +
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTS 121
Query: 446 FRS 448
S
Sbjct: 122 LGS 124
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 397 CHLERLNILNLSGNKLS---GHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRS 448
C +++ ++LS L+ + L SLT L L L ++ ++ S+ S
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS 101
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 1e-74
Identities = 80/325 (24%), Positives = 125/325 (38%), Gaps = 58/325 (17%)
Query: 9 TDQSSLLAFKAHAFDYRSALAN-NWSISYPICSWAGISCGSRHQ--RVTALNLSDMGLGG 65
D+ +LL K + L++ + +W G+ C + Q RV L+LS + L
Sbjct: 6 QDKQALLQIKKD-LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 66 T---------------------------IPLHFGNLSFLVSLDISENNFHGHLPKELGQL 98
IP L+ L L I+ N G +P L Q+
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 99 RRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI 158
+ L + +YN LSG+ P I L L + D N +G IP+S + S+L
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL--------- 175
Query: 159 IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNI 218
++ + L G+IP +L NL +DL+ N L G +
Sbjct: 176 --------------FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 219 STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN 278
+ + L N L+ L +G +N+ L L N + G +P +T L L++ FN
Sbjct: 221 KNTQKIHLAKNSLAFDLGK-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 279 SFSGHIPNTFGNLRHLSVLNVMMNN 303
+ G IP GNL+ V N
Sbjct: 279 NLCGEIP-QGGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 5e-64
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 41/294 (13%)
Query: 161 GTIPSRIGNLRKLVNLGLWSCNLQGQ--IPTEIGSLQNLKNLDLAD-NKLSGLIPPTIFN 217
G + ++ NL L NL IP+ + +L L L + N L G IPP I
Sbjct: 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 218 ISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGF 277
++ + L + +SG +P + ++ + L S N L G +P SI++ L+G+
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 278 NSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG 337
N SG IP+++G+ L + ++ N L
Sbjct: 159 NRISGAIPDSYGSFSKLFTS-------------------------------MTISRNRLT 187
Query: 338 GILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC 397
G +P N N+ +L N L G G+ + Q ++ +N+L + +
Sbjct: 188 GKIPPTFANL-----NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241
Query: 398 HLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDS 451
+ LN L+L N++ G +P L L L L++ N L IP + FD
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 16/193 (8%)
Query: 259 KIPNSITNATKL----IGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314
+I + N T L D ++ G + +T ++ L++ NL +
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK------PY 66
Query: 315 SFLSSLTNCRNLSNLALAS-NPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIG 373
SSL N L+ L + N L G +P I L ++ + +++G IP +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK----LTQLHYLYITHTNVSGAIPDFLS 122
Query: 374 TLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRE-LHLG 432
++ L N L G +P + L L + GN++SG IP S + L + +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 433 SNKLSSSIPSSLA 445
N+L+ IP + A
Sbjct: 183 RNRLTGKIPPTFA 195
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 9e-68
Identities = 77/399 (19%), Positives = 143/399 (35%), Gaps = 53/399 (13%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL---- 111
N T L + NL L +++ LP L L ++++++A N+
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Query: 112 ----SGSFPSWIGVLSKLRILRLDYNNF-TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR 166
+ V K++I+ + YNN T P+ SL + +L ML +N + G +P+
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA- 348
Query: 167 IGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPT-IFNISTMRILT 225
G+ KL +L L + G + ++NL A NKL + ++S M +
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408
Query: 226 LESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP 285
N++ + + + ++L N S
Sbjct: 409 FSYNEIGS------------------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450
Query: 286 NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIG 345
F LS +N+M N LT ++ + + N L+++ L N L +
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLK-DENENFKNTYLLTSIDLRFNKLTKLSDDF-- 507
Query: 346 NFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNIL 405
+ +L + +L +N + PT L+GF + N
Sbjct: 508 -RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI------------------RNQR 547
Query: 406 NLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444
+ GN+ P + SL +L +GSN + + +
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 2e-61
Identities = 61/430 (14%), Positives = 126/430 (29%), Gaps = 72/430 (16%)
Query: 26 SALANNWSISYPICSWA---GISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDI 82
+ NW+ + + W G+S S RVT L+L G G +P G L+ L L +
Sbjct: 54 TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112
Query: 83 SENNFHG----HLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGP 138
+ PK + +F + +++ N+
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS---- 168
Query: 139 IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK 198
+ +I K +G S N+ + + L L+
Sbjct: 169 ------------------DPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR 209
Query: 199 NLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIG 258
+ ++ +
Sbjct: 210 QFYMGNSPFVAENICEAWENEN------------------------------SEYAQQYK 239
Query: 259 KIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLS 318
N L +++ +P L + ++NV N + D W L+
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 319 SLTNCRNLSNLALASNPL-GGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQ 377
+ + + N L + + ++ + E +N L G +P + G+ +
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQK----MKKLGMLECLYNQLEGKLP-AFGSEIK 354
Query: 378 LQGFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSGHIPP--CLASLTSLRELHLGSN 434
L + N + +P + C E++ L+ + NKL IP S++ + + N
Sbjct: 355 LASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYN 412
Query: 435 KLSSSIPSSL 444
++ S +
Sbjct: 413 EIGSVDGKNF 422
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 187 bits (478), Expect = 2e-51
Identities = 56/394 (14%), Positives = 118/394 (29%), Gaps = 65/394 (16%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNF-HGHLPKELGQLRRLRVMSLAYNKLSGS 114
++ + + + I NN + L ++++L ++ YN+L G
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345
Query: 115 FPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR--IGNLRK 172
P+ G KL L L YN T N ++E L N + IP+ ++
Sbjct: 346 LPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403
Query: 173 LVNLGLWSCNLQG-------QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILT 225
+ + + + N+ +++L++N++S S + +
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463
Query: 226 LESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP 285
L N L+ +P N + + N L +DL FN +
Sbjct: 464 LMGNMLTE-IPK-----------------NSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505
Query: 286 N-TFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLI 344
+ L +L +++ N+ + F + N L + +
Sbjct: 506 DFRATTLPYLVGIDLSYNSFS---------KFPTQPLNSSTLKGFGIRNQRD-------- 548
Query: 345 GNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNI 404
N P I L + N+++ V + +++
Sbjct: 549 --------------AQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISV 591
Query: 405 LNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438
L++ N + L +K
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-28
Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 18/193 (9%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHG-------HLPKELGQLRRLRVMSL 106
+++NLS+ + F S L S+++ N + L + L
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495
Query: 107 AYNKLSGSFPSW-IGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIG----- 160
+NKL+ + L L + L YN+F+ P N S L+
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554
Query: 161 -GTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNIS 219
P I L L + S +++ + +I N+ LD+ DN + +
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYI 611
Query: 220 TMRILTLESNQLS 232
+ L ++
Sbjct: 612 EAGMYMLFYDKTQ 624
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 6e-62
Identities = 78/408 (19%), Positives = 125/408 (30%), Gaps = 37/408 (9%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
L+LS L F + L LD+S L L + L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN-IIGGTIPSRIGNLR 171
LS L+ L N + +L L+ L N I +P NL
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 172 KLVNLGLWSCNLQGQIPTEIGSLQNLKN----LDLADNKLSGLIPPTIFNISTMRILTLE 227
L +L L S +Q T++ L + LDL+ N ++ I P F + LTL
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208
Query: 228 SNQLSGRLPSTIGHSLRNIEYLALS------TNNLIGKIPNSITNATKLIGLDLGFNS-- 279
+N S + T L +E L NL +++ L +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 280 -FSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGG 338
+ I + F L ++S +++ + + + +L L + G
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER----------VKDFSYNFGWQHLELVNCKFGQ 318
Query: 339 ILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ--GYVPHDL 396
+ + L F G S L L+ + N L G
Sbjct: 319 FPTLKLKSLK---------RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 397 CHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444
L L+LS N + + L L L + L S+
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-49
Identities = 84/426 (19%), Positives = 138/426 (32%), Gaps = 51/426 (11%)
Query: 56 LNLSD-MGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVM----SLAYNK 110
LN++ + +P +F NL+ L LD+S N +L L ++ ++ L+ N
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLR------AEFNIIGGTI 163
++ P + L L L N + + + L+ LE+ R +
Sbjct: 189 MNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 164 PSRIGNLRKLVNLGLWSCNL---QGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNIST 220
S + L L L I L N+ + L + +
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFG 305
Query: 221 MRILTLESNQLSGRLPSTIGH------------------SLRNIEYLALSTNNL--IGKI 260
+ L L + + + L ++E+L LS N L G
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365
Query: 261 PNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSL 320
S T L LDL FN + + F L L L+ +NL S S
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVF 417
Query: 321 TNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI-PTSIGTLQQLQ 379
+ RNL L ++ + S SL+ + + N P L+ L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLK---MAGNSFQENFLPDIFTELRNLT 473
Query: 380 GFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSS 439
+ + L+ P L L +LN+S N L SL+ L N + +S
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Query: 440 IPSSLA 445
L
Sbjct: 534 KKQELQ 539
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 3e-47
Identities = 83/395 (21%), Positives = 133/395 (33%), Gaps = 31/395 (7%)
Query: 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTG 137
++ E NF+ +P L + + L++N L +L++L L
Sbjct: 10 ITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 138 PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNL 197
+ +LS L L N I L L L NL IG L+ L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 198 KNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS---T 253
K L++A N + P F N++ + L L SN++ + + L + L LS +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLS 185
Query: 254 NNLIGKIPNSITNATKLIGLDLGFNSFSGHIP-NTFGNLRHLSVLNVMMNNLTTESSSAD 312
N + I +L L L N S ++ L L V +++ E +
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245
Query: 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP--- 369
S+L NL+ L L +I F+ L N+ +F L +
Sbjct: 246 --FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIERVKDFSY 302
Query: 370 --------------TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS-- 413
TL+ + + +G L L L+LS N LS
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 414 GHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRS 448
G TSL+ L L N + + + L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-41
Identities = 64/324 (19%), Positives = 114/324 (35%), Gaps = 20/324 (6%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
V++ +L + + + L++ F +L L+RL +
Sbjct: 282 TNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTS 334
Query: 111 LSGSFPSWIGVLSKLRILRLDYN--NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIG 168
G L L L L N +F G S F + L+ L FN + T+ S
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393
Query: 169 NLRKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227
L +L +L NL+ + SL+NL LD++ +S++ +L +
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 228 SNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNT 287
N I LRN+ +L LS L P + + + L L++ N+F
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 288 FGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF 347
+ L L VL+ +N++ T L +L+ L L N +F
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQE-----LQHF--PSSLAFLNLTQNDFACTCE--HQSF 564
Query: 348 SASLQNIYAFELGFNDLNGTIPTS 371
+++ + + P+
Sbjct: 565 LQWIKDQRQLLVEVERMECATPSD 588
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 27/124 (21%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
+ +T L+LS L P F +LS L L++S NNF L L+V+ + N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
Query: 111 LSGSFPSWIG-VLSKLRILRLDYNNF--------------------------TGPIPNSL 143
+ S + S L L L N+F P+
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589
Query: 144 FNLS 147
+
Sbjct: 590 QGMP 593
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 2e-61
Identities = 79/411 (19%), Positives = 142/411 (34%), Gaps = 26/411 (6%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115
LNL L F + L L + N+ + + L + L++N LS +
Sbjct: 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137
Query: 116 PSWIGVLSKLRILRLDYNNFTGPIPN--SLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
L L+ L L N +F S L+ L N I P + +L
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197
Query: 174 VNLGLWSCNLQGQIPTEIG---SLQNLKNLDLADNKLSGLIPPTIFN--ISTMRILTLES 228
L L + L + ++ + +++NL L++++LS T + + +L L
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 229 NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKL---------IGLDLGFNS 279
N L+ + L +EY L NN+ +S+ + + S
Sbjct: 258 NNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316
Query: 280 FSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGI 339
+F L+ L LN+ N++ S+ T NL L+L+++
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--------FTGLINLKYLSLSNSFTSLR 368
Query: 340 LPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHD-LCH 398
S + ++ L N ++ + L L+ + N + +
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Query: 399 LERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSF 449
LE + + LS NK A + SL+ L L L + S F+
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 2e-60
Identities = 76/406 (18%), Positives = 145/406 (35%), Gaps = 28/406 (6%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115
+ S + L +P + + L+++ N + +L + + +N +S
Sbjct: 9 ADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65
Query: 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVN 175
P L L++L L +N + + + L L N I + + L+
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 176 LGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTI--FNISTMRILTLESNQLSG 233
L L L L+NL+ L L++NK+ L + F S+++ L L SNQ+
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSIT---NATKLIGLDLGFNSFSGHIPNTFGN 290
P H++ + L L+ L + + T + L L + S TF
Sbjct: 186 FSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 291 LR--HLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFS 348
L+ +L++L++ NNL + S L L N + + +
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGN--------DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 349 A-----SLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLN 403
++ + L S L+ L+ + +N++ G + L L
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 404 ILNLSGNKLSGHIPPCLA----SLTSLRELHLGSNKLSSSIPSSLA 445
L+LS + S + + L L+L NK+S + +
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 5e-60
Identities = 95/444 (21%), Positives = 150/444 (33%), Gaps = 33/444 (7%)
Query: 28 LANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSF--LVSLDISEN 85
L N + + + + + L+LS+ L T F L + L LD+S N
Sbjct: 202 LNNV-QLGPSLTEKLCLELANTS--IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 86 NFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN---------NFT 136
N + L +L L YN + F + L +R L L + +
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 137 GPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG---- 192
S L LE L E N I G + L L L L + + T
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378
Query: 193 SLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252
+ L L+L NK+S + + + +L L N++ L L NI + LS
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 253 TNNLIGKIPNSITNATKLIGLDLGFNSFSG--HIPNTFGNLRHLSVLNVMMNNLTTESSS 310
N + NS L L L + P+ F LR+L++L++ NN+ +
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 311 ADQWSFLSSLTNCRNLSNLALASNPL----GGILPQLIGNFSASLQNIYAFELGFNDLNG 366
L L L L N L P F L +++ L N +
Sbjct: 499 M--------LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550
Query: 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLA-SLTS 425
L +L+ + NNL + L LNL N ++ + +
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610
Query: 426 LRELHLGSNKLSSSIPSSLAFRSF 449
L EL + N + S F ++
Sbjct: 611 LTELDMRFNPFDCTCESIAWFVNW 634
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-33
Identities = 53/256 (20%), Positives = 84/256 (32%), Gaps = 12/256 (4%)
Query: 56 LNLSDMGLGGTIPLH-FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG- 113
L+L +G + + L + + +S N + + L+ + L L
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Query: 114 -SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNII--------GGTIP 164
S PS L L IL L NN + L L +LE+L + N + G
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 165 SRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRIL 224
+ L L L L S L LK +DL N L+ L N +++ L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Query: 225 TLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHI 284
L+ N ++ G + RN+ L + N + + S H
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649
Query: 285 P-NTFGNLRHLSVLNV 299
NT + V
Sbjct: 650 LCNTPPHYHGFPVRLF 665
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-11
Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 8/138 (5%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
+ LNL G F +L L +D+ NN + L+ ++L N
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595
Query: 111 LSGSFPSWIG-VLSKLRILRLDYNNFTGPIPNSLF-----NLSRLEMLRAEFNIIGGTIP 164
++ G L L + +N F + + N + + + + T P
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655
Query: 165 SRIGNLRKLVNLGLWSCN 182
G + SC
Sbjct: 656 HYHG--FPVRLFDTSSCK 671
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 211 bits (538), Expect = 2e-58
Identities = 67/438 (15%), Positives = 137/438 (31%), Gaps = 62/438 (14%)
Query: 56 LNLSDMGLGG------TIPLHFGNLSFLVSLDISENNFHG-------------------H 90
++L D +G I L+ L + + + F +
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482
Query: 91 LPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGP---------IPN 141
L+ L + L P ++ L +L+ L + N + +
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542
Query: 142 SLFNLSRLEMLRAEFNIIGGTIPSR-IGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNL 200
++++ +N + S + + KL L + + G+ L +L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDL 600
Query: 201 DLADNKLSGLIPPTIFNIST-MRILTLESNQLSGRLPSTIG-HSLRNIEYLALSTNNLIG 258
L N++ IP + + L N+L +P+ S+ + + S N IG
Sbjct: 601 KLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFS-YNKIG 657
Query: 259 KIPNSIT------NATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD 312
+I+ + L +N F +S + + N +T+ ++
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717
Query: 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372
+ + N L+ + L N L + L N+ + +N + + PT
Sbjct: 718 K-PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD---VSYNCFS-SFPTQP 772
Query: 373 GTLQQLQGFYVPE------NNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSL 426
QL+ F + N + P + L L + N + + L L
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQL 829
Query: 427 RELHLGSNKLSSSIPSSL 444
L + N S +S+
Sbjct: 830 YILDIADNPNISIDVTSV 847
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 5e-58
Identities = 65/440 (14%), Positives = 142/440 (32%), Gaps = 50/440 (11%)
Query: 31 NWSISYPICSWAGISCGSRHQ--RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFH 88
NW+ + + W RVT L+L+ G G +P G L+ L L ++
Sbjct: 301 NWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET 360
Query: 89 GHLP-------KELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPN 141
R + + Y K+ + + + L+ +
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420
Query: 142 SLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLD 201
S +L ++ I I I L KL + + + ++ +
Sbjct: 421 SRISLKDTQIGNLTNRI--TFISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDAN 473
Query: 202 LADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIG--- 258
K + N+ + + L + +LP + L ++ L ++ N I
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQ 532
Query: 259 ------KIPNSITNATKLIGLDLGFNSFSG-HIPNTFGNLRHLSVLNVMMNNLTTESSSA 311
++ + K+ +G+N+ + + L +L+ + N +
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH----- 587
Query: 312 DQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP-- 369
L + L++L L N + I P+ F+ ++ + N L IP
Sbjct: 588 -----LEAFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLG---FSHNKLK-YIPNI 637
Query: 370 TSIGTLQQLQGFYVPENNLQGYVPH-----DLCHLERLNILNLSGNKLSGHIPPCLASLT 424
+ ++ + N + + D + + LS N++ A+ +
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697
Query: 425 SLRELHLGSNKLSSSIPSSL 444
+ + L +N + +SIP +
Sbjct: 698 PISTIILSNNLM-TSIPENS 716
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 2e-57
Identities = 75/409 (18%), Positives = 135/409 (33%), Gaps = 43/409 (10%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG-- 113
N L + NL L +++ LP L L L+ +++A N+
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 114 -------SFPSWIGVLSKLRILRLDYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPS 165
K++I + YNN P SL + +L +L N +
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLE 589
Query: 166 RIGNLRKLVNLGLWSCNLQGQIPTEIGS-LQNLKNLDLADNKLSGLIPPTIF--NISTMR 222
G KL +L L ++ +IP + + ++ L + NKL IP ++ M
Sbjct: 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647
Query: 223 ILTLESNQLSGRLPSTIGHSL-----RNIEYLALSTNNLIGKIPNSITNATKLIGLDLGF 277
+ N++ I S+ N + LS N + + + + L
Sbjct: 648 SVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 278 NSFS-------GHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLA 330
N + + N L+ +++ N LT+ S T LSN+
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF-------RATTLPYLSNMD 759
Query: 331 LASNPLGGILPQLIGNFSA--SLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNL 388
++ N P N S + + + N + PT I T L + N++
Sbjct: 760 VSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818
Query: 389 QGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLS 437
+ V L +L IL+++ N + L +K
Sbjct: 819 RK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 176 bits (447), Expect = 2e-46
Identities = 59/381 (15%), Positives = 125/381 (32%), Gaps = 26/381 (6%)
Query: 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGP 138
+ + + + +L R+ +SLA G P IG L++L++L ++ T
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 139 IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK 198
+M + I + + +NL + + P E+ ++
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDS 421
Query: 199 NLDLADNKLSGL------IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252
+ L D ++ L I I ++ ++I+ ++ + + N
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-DNIAVDWEDAN-----SD 475
Query: 253 TNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD 312
S +N L ++L +P+ +L L LN+ N + +
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535
Query: 313 QWSFL-SSLTNCRNLSNLALASNPLGGI-LPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370
W+ L + + N L + + + + N +
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK----MVKLGLLDCVHNKV--RHLE 589
Query: 371 SIGTLQQLQGFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSGHIPPC--LASLTSLR 427
+ GT +L + N ++ +P D C +++ L S NKL IP S+ +
Sbjct: 590 AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647
Query: 428 ELHLGSNKLSSSIPSSLAFRS 448
+ NK+ S +
Sbjct: 648 SVDFSYNKIGSEGRNISCSMD 668
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 1e-37
Identities = 42/351 (11%), Positives = 92/351 (26%), Gaps = 35/351 (9%)
Query: 107 AYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR 166
+ + + + + L + N+ + + E ++ G
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNK-ELDMWGDQPGVD 318
Query: 167 IGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTL 226
+ N ++ L L +G++P IG L LK L + + T +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 227 ESNQLSGRLPSTIGHSLRNIEYLALSTN-----NLIGKIPNSITNATKLIGLDLGFNSFS 281
+++ + + L + + I + K + N +
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438
Query: 282 GHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP 341
I L L ++ + T + +
Sbjct: 439 F-ISKAIQRLTKLQIIYFANSPFT-------------YDNIAVDWEDANSDYAKQYENEE 484
Query: 342 QLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY---------V 392
N L+++ EL +P + L +LQ + N +
Sbjct: 485 LSWSN----LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540
Query: 393 PHDLCHLERLNILNLSGNKLSG-HIPPCLASLTSLRELHLGSNKLSSSIPS 442
D ++ I + N L L + L L NK+ + +
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEA 590
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 21/220 (9%)
Query: 28 LANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNF 87
+ N I + + + + + LS + F S + ++ +S N
Sbjct: 651 FSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709
Query: 88 -------HGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGV--LSKLRILRLDYNNFTGP 138
L + L +NKL+ S L L + + YN F+
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS- 767
Query: 139 IPNSLFNLSRLEMLR------AEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG 192
P N S+L+ AE N I P+ I L+ L + S +++ + ++
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL- 825
Query: 193 SLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232
L LD+ADN + ++ + L ++
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 4e-47
Identities = 75/400 (18%), Positives = 128/400 (32%), Gaps = 27/400 (6%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115
N ++GL IP + L+ S N +L L + L ++
Sbjct: 17 YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVN 175
+L L L N +L L+ L I + N + L +
Sbjct: 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133
Query: 176 LGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTL--ESNQLSG 233
L L S ++ + + LK LD +N + L + ++ L+L N ++G
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNAT--KLIGLDLGFNSFSGHIPNTFGNL 291
+ S + L + I + N+T L P F L
Sbjct: 194 -IEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251
Query: 292 RHLSV--LNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSA 349
+SV +N+ + SS+ L L L + L + L+G
Sbjct: 252 CEMSVESINLQKHYFFNISSNT--------FHCFSGLQELDLTATHLSELPSGLVG---- 299
Query: 350 SLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYV-PHDLCHLERLNILNLS 408
L + L N S L + N + + L +LE L L+LS
Sbjct: 300 -LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358
Query: 409 GNKL--SGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAF 446
+ + S L +L+ L+ L+L N+ S +
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 4e-45
Identities = 73/405 (18%), Positives = 148/405 (36%), Gaps = 25/405 (6%)
Query: 52 RVTALNLSDMGLGGTIPLHFGNLSFL--VSLDISENNFHGHLPKELGQLRRLRVMSLAYN 109
++ L+ + + +L +SL+++ N+ + + ++
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGT 212
Query: 110 KLSGSFPSWIG--VLSKLRILRLDYNNFTGPIPNSLFNLSR--LEMLRAEFNIIGGTIPS 165
+ + + L + + + P L +E + + + +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 166 RIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILT 225
L L L + +L ++P+ + L LK L L+ NK L + N ++ L+
Sbjct: 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 226 LESNQLSGRLPSTIGHSLRNIEYLALSTNNL--IGKIPNSITNATKLIGLDLGFNSFSGH 283
++ N L + +L N+ L LS +++ + N + L L+L +N
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 284 IPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQL 343
F L +L++ L + + S N L L L+ + L QL
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQ-------SPFQNLHLLKVLNLSHSLLDISSEQL 444
Query: 344 IGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ---QLQGFYVPENNLQGYVPHDLCHLE 400
+LQ++ L N +LQ +L+ + +L H L+
Sbjct: 445 FDGLP-ALQHLN---LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500
Query: 401 RLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLA 445
+N ++LS N+L+ L+ L + L+L SN +S +PS L
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 5e-36
Identities = 59/291 (20%), Positives = 101/291 (34%), Gaps = 16/291 (5%)
Query: 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111
+ L+L+ L +P LS L L +S N F L +S+ N
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 112 SGS-FPSWIGVLSKLRILRLDYNNFT--GPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIG 168
+ L LR L L +++ L NLS L+ L +N
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 169 NLRKLVNLGLWSCNLQGQIP-TEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227
+L L L L+ + + +L LK L+L+ + L + ++ L L+
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 228 SNQLSGRLPSTIG--HSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP 285
N +L +E L LS +L ++ T+ + +DL N +
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
Query: 286 NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
+L+ + LN+ N+++ S L + L NPL
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSL--------LPILSQQRTINLRQNPL 559
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-34
Identities = 59/271 (21%), Positives = 95/271 (35%), Gaps = 9/271 (3%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLAYNKL--S 112
L LS + N L L I N L L L LR + L+++ + S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIP-SRIGNLR 171
+ LS L+ L L YN + +LE+L F + S NL
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 172 KLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI---PPTIFNISTMRILTLES 228
L L L L L L++L+L N ++ + + IL L
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 229 NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTF 288
LS + SL+ + ++ LS N L ++++ + L+L N S +P+
Sbjct: 486 CDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLL 543
Query: 289 GNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
L +N+ N L S+ +
Sbjct: 544 PILSQQRTINLRQNPLDCTCSNIYFLEWYKE 574
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 6e-13
Identities = 39/178 (21%), Positives = 62/178 (34%), Gaps = 24/178 (13%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHG---HLPKELGQLRRLRVMSLAYNK 110
LNLS L + F L L L++ N+F L L RL ++ L++
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
LS L + + L +N T +L +L + L N I +PS + L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546
Query: 171 RKLVNLGL----WSCN----------------LQGQIPTEIGSLQNLKNLDLADNKLS 208
+ + L C L+ T + L+ + L+D LS
Sbjct: 547 SQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 4e-44
Identities = 97/392 (24%), Positives = 164/392 (41%), Gaps = 44/392 (11%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
VT L +G+ L+ L ++ S N P L L +L + + N+++
Sbjct: 48 VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK 172
P + L+ L L L N T P L NL+ L L N I + S + L
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTS 157
Query: 173 LVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232
L L + P + +L L+ LD++ NK+S + + ++ + L +NQ+S
Sbjct: 158 LQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 212
Query: 233 GRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292
+ +G L N++ L+L+ N L ++ + T L LDL N S P L
Sbjct: 213 D--ITPLGI-LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 265
Query: 293 HLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQ 352
L+ L + N ++ +S L L+NL L N L I P I N +L
Sbjct: 266 KLTELKLGANQISN----------ISPLAGLTALTNLELNENQLEDISP--ISNLK-NLT 312
Query: 353 NIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKL 412
+ L FN+++ P + +L +LQ + N + L +L +N L+ N++
Sbjct: 313 YLT---LYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQI 365
Query: 413 SGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444
S P LA+LT + +L L +++ +
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYK 395
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 4e-43
Identities = 94/389 (24%), Positives = 156/389 (40%), Gaps = 44/389 (11%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
L + T+ +L + +L + L L ++ + N+L+
Sbjct: 26 KMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLT 81
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK 172
P + L+KL + ++ N P L NL+ L L N I P + NL
Sbjct: 82 DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTN 135
Query: 173 LVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232
L L L S + + + L +L+ L N+++ L P + N++T+ L + SN++S
Sbjct: 136 LNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVS 190
Query: 233 GRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292
S + L N+E L + NN I I + T L L L N T +L
Sbjct: 191 D--ISVLAK-LTNLESLIAT-NNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLT 243
Query: 293 HLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQ 352
+L+ L++ N ++ L+ L+ L+ L L +N + I P + L
Sbjct: 244 NLTDLDLANNQISN----------LAPLSGLTKLTELKLGANQISNISP--LAG----LT 287
Query: 353 NIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKL 412
+ EL N L P I L+ L + NN+ P + L +L L NK+
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343
Query: 413 SGHIPPCLASLTSLRELHLGSNKLSSSIP 441
S LA+LT++ L G N++S P
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISDLTP 370
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 4e-40
Identities = 86/385 (22%), Positives = 152/385 (39%), Gaps = 42/385 (10%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
T +N S+ L PL NL+ LV + ++ N L L L ++L N+++
Sbjct: 71 TQINFSNNQLTDITPL--KNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD 126
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
P + L+ L L L N + L L+ L+ L + + NL L
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTL 179
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
L + S + + + L NL++L +N++S + P + ++ + L+L NQL
Sbjct: 180 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRH 293
T+ L N+ L L+ N + P ++ TKL L LG N S P L
Sbjct: 236 --IGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288
Query: 294 LSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQN 353
L+ L + N L +S ++N +NL+ L L N + I P + + L
Sbjct: 289 LTNLELNENQLED----------ISPISNLKNLTYLTLYFNNISDISP--VSS----LTK 332
Query: 354 IYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS 413
+ N + + +S+ L + N + P L +L R+ L L+ +
Sbjct: 333 LQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388
Query: 414 GHIPPCLASLTSLRELHLGSNKLSS 438
A+++ + + L +
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGALIA 413
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 1e-39
Identities = 82/366 (22%), Positives = 151/366 (41%), Gaps = 42/366 (11%)
Query: 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132
L+ + + + N L ++ + + + L+ L +
Sbjct: 22 ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 77
Query: 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG 192
N T P L NL++L + N I P + NL L L L++ + P +
Sbjct: 78 NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LK 131
Query: 193 SLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252
+L NL L+L+ N +S + + +++++ L+ NQ++ + + L +E L +S
Sbjct: 132 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSF-GNQVTD--LKPLAN-LTTLERLDIS 185
Query: 253 TNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD 312
+N + + + T L L N S P G L +L L++ N L
Sbjct: 186 SNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD------ 235
Query: 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372
+ +L + NL++L LA+N + + P + L + +LG N ++ P +
Sbjct: 236 ----IGTLASLTNLTDLDLANNQISNLAP--LSG----LTKLTELKLGANQISNISP--L 283
Query: 373 GTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG 432
L L + EN L+ P + +L+ L L L N +S P ++SLT L+ L
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339
Query: 433 SNKLSS 438
+NK+S
Sbjct: 340 NNKVSD 345
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-29
Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 36/297 (12%)
Query: 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLAD 204
L+ + T+ +L ++ L ++ + L NL ++ ++
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSN 77
Query: 205 NKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI 264
N+L+ + P + N++ + + + +NQ++ + + + L N+ L L NN I I +
Sbjct: 78 NQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLAN-LTNLTGLTLF-NNQITDIDP-L 130
Query: 265 TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCR 324
N T L L+L N+ S + L L L+ N +T L L N
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD----------LKPLANLT 177
Query: 325 NLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVP 384
L L ++SN + I + + +L+++ N ++ P +G L L +
Sbjct: 178 TLERLDISSNKVSDISV--LAKLT-NLESLI---ATNNQISDITP--LGILTNLDELSLN 229
Query: 385 ENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIP 441
N L+ L L L L+L+ N++S P L+ LT L EL LG+N++S+ P
Sbjct: 230 GNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-26
Identities = 59/272 (21%), Positives = 107/272 (39%), Gaps = 19/272 (6%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
+L ++ + PL G L+ L L ++ N L L L + LA N++S
Sbjct: 202 ESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
P + L+KL L+L N + P L L+ L L N + P I NL+ L
Sbjct: 258 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
L L+ N+ P + SL L+ L +NK+S + ++ N++ + L+ NQ+S
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRH 293
+ + + L I L L+ N N + + + P T +
Sbjct: 368 --LTPLAN-LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGS 422
Query: 294 LSVLNVMMNNLTTESSSADQWSFLSSLTNCRN 325
+ ++ N + + + +S ++
Sbjct: 423 YTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 9e-21
Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 16/232 (6%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
T L+L++ + PL L+ L L + N L L L + L N+L
Sbjct: 246 TDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
P I L L L L +NN + P + +L++L+ L N + + S + NL +
Sbjct: 302 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNI 355
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
L + P + +L + L L D + N+S + + L
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI- 412
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP 285
P+TI + + T NL ++ + + G +FSG +
Sbjct: 413 -APATISD-GGSYTEPDI-TWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 4e-43
Identities = 81/384 (21%), Positives = 147/384 (38%), Gaps = 40/384 (10%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
L + P +L+ + + + + +L + + +A K++
Sbjct: 3 ATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS 58
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
I L+ L L L+ N T P L NL +L L N I T S + NL L
Sbjct: 59 --IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNL 112
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
L L N+ P + +L + +L+L N + P + N++ + LT+ +++
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD 169
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRH 293
+ I + L ++ L+L+ N I I + + T L N + P N+
Sbjct: 170 --VTPIAN-LTDLYSLSLN-YNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTR 222
Query: 294 LSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQN 353
L+ L + N +T LS L N L+ L + +N + I + + L
Sbjct: 223 LNSLKIGNNKITD----------LSPLANLSQLTWLEIGTNQISDINA--VKD----LTK 266
Query: 354 IYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS 413
+ +G N + + + + L QL ++ N L + L L L LS N ++
Sbjct: 267 LKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
Query: 414 GHIPPCLASLTSLRELHLGSNKLS 437
P LASL+ + + +
Sbjct: 325 DIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 5e-41
Identities = 75/365 (20%), Positives = 139/365 (38%), Gaps = 38/365 (10%)
Query: 77 LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT 136
+L + P L L ++ L + L +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57
Query: 137 GPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQN 196
+ L+ LE L N I P + NL KL NL + + + + + +L N
Sbjct: 58 SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111
Query: 197 LKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL 256
L+ L L ++ +S + P + N++ M L L +N S + + + + YL ++ +
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSN-MTGLNYLTVT-ESK 166
Query: 257 IGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSF 316
+ + I N T L L L +N P +L L +N +T
Sbjct: 167 VKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD---------- 213
Query: 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ 376
++ + N L++L + +N + + P + N S L + +G N + + ++ L
Sbjct: 214 ITPVANMTRLNSLKIGNNKITDLSP--LANLS-QLTWLE---IGTNQI--SDINAVKDLT 265
Query: 377 QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436
+L+ V N + L +L +LN L L+ N+L + LT+L L L N +
Sbjct: 266 KLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Query: 437 SSSIP 441
+ P
Sbjct: 324 TDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 3e-40
Identities = 72/363 (19%), Positives = 140/363 (38%), Gaps = 38/363 (10%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
L + + L + L ++ + + L L ++L N+
Sbjct: 22 AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQ 77
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
++ P + L KL L + N T ++L NL+ L L + I P + NL
Sbjct: 78 ITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANL 131
Query: 171 RKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQ 230
K+ +L L N + + ++ L L + ++K+ + P I N++ + L+L NQ
Sbjct: 132 TKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188
Query: 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290
+ S + L ++ Y N + P + N T+L L +G N + P N
Sbjct: 189 IED--ISPLAS-LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241
Query: 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSAS 350
L L+ L + N ++ ++++ + L L + SN + I + N
Sbjct: 242 LSQLTWLEIGTNQISD----------INAVKDLTKLKMLNVGSNQISDISV--LNN---- 285
Query: 351 LQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGN 410
L + + L N L IG L L ++ +N++ P L L +++ + +
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343
Query: 411 KLS 413
+
Sbjct: 344 VIK 346
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 7e-41
Identities = 59/399 (14%), Positives = 121/399 (30%), Gaps = 33/399 (8%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
R ++D L + + + LD+S N +L +L +++L+ N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
L + + LS LR L L+ N L +E L A N I +
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSC--SRG 119
Query: 171 RKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESN 229
+ N+ L + + + G ++ LDL N++ + + + T+ L L+ N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 230 QLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFG 289
+ + + ++ L LS +N + + +A + + L N I
Sbjct: 180 FIY-DVKGQV--VFAKLKTLDLS-SNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 290 NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSA 349
++L ++ N + F S + ++ + L G
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAKQTVKK---------LTGQNEE 281
Query: 350 SLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQG----YVPHDLCHLERLNIL 405
G L L+ + QG + + + R +
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREI 341
Query: 406 NLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444
+ + I + L L + +
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-27
Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 30/352 (8%)
Query: 163 IPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMR 222
I N + + +L+ + + S N+K LDL+ N LS + + + +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 223 ILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSG 282
+L L SN L + L + L L+ N + + + L N+ S
Sbjct: 62 LLNLSSNVLYE--TLDLES-LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113
Query: 283 HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQ 342
+ +++ + N N +T + L L N + +
Sbjct: 114 VSCSRGQGKKNIYLAN---NKITMLRDLD--------EGCRSRVQYLDLKLNEIDTVNFA 162
Query: 343 LIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERL 402
+ S +L+++ L +N + + + +L+ + N L ++ + +
Sbjct: 163 ELAASSDTLEHLN---LQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216
Query: 403 NILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHR 462
++L NKL I L +L L N F V + +
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKK 274
Query: 463 NLIKIISSCSNP---DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511
+ C+ P + A E +P ++ + +L +
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-40
Identities = 59/381 (15%), Positives = 116/381 (30%), Gaps = 78/381 (20%)
Query: 70 HFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129
H + S +L + L Q +R + + + +I
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIET 62
Query: 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPT 189
+ L + + V L L S L Q P
Sbjct: 63 RTGRALKA-TADLLEDAT----------------------QPGRVALELRSVPLP-QFPD 98
Query: 190 EIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249
+ L +L+++ + L L P T+ + + LTL N L LP++I L + L
Sbjct: 99 QAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLREL 155
Query: 250 ALSTNNLIGKIPNSITNA---------TKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVM 300
++ + ++P + + L L L + +P + NL++L L +
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214
Query: 301 MNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELG 360
+ L+ + ++ + L L L G
Sbjct: 215 NSPLS---------ALGPAIHHLPKLEELDLR---------------------------G 238
Query: 361 FNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCL 420
L P G L+ + + + +P D+ L +L L+L G +P +
Sbjct: 239 CTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 421 ASLTSLRELHLGSNKLSSSIP 441
A L + + + + +
Sbjct: 298 AQLPANCIILVPPHLQAQLDQ 318
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 3e-39
Identities = 58/259 (22%), Positives = 94/259 (36%), Gaps = 21/259 (8%)
Query: 48 SRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLA 107
+ AL L + L P LS L + I LP + Q L ++LA
Sbjct: 78 ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA 135
Query: 108 YNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI 167
N L + P+ I L++LR L + +P L +
Sbjct: 136 RNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD---------------ASGEH 179
Query: 168 GNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227
L L +L L ++ +P I +LQNLK+L + ++ LS L P I ++ + L L
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLR 237
Query: 228 SNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNT 287
P G ++ L L + + +P I T+L LDL +P+
Sbjct: 238 GCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 288 FGNLRHLSVLNVMMNNLTT 306
L ++ V +
Sbjct: 297 IAQLPANCIILVPPHLQAQ 315
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 38/240 (15%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115
+ + GL +P + L +L ++ N LP + L RLR +S+
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166
Query: 116 PSWIG---------VLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR 166
P + L L+ LRL++ +P S+ NL L+ L+ + + +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPL-SALGPA 224
Query: 167 IGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTL 226
I +L KL L L C P G LK L L D
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC--------------------- 263
Query: 227 ESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPN 286
+ L LP I L +E L L + ++P+ I + + + + +
Sbjct: 264 --SNLL-TLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 5e-16
Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 18/208 (8%)
Query: 257 IGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSF 316
+G + +++ L ++ + + + ++W
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR------------NRWHS 48
Query: 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ 376
N N L L+ + A+ A EL L P L
Sbjct: 49 AWRQANSNNPQIETRTGRALK-ATADLLED--ATQPGRVALELRSVPLP-QFPDQAFRLS 104
Query: 377 QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436
LQ + L +P + L L L+ N L +P +ASL LREL + +
Sbjct: 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162
Query: 437 SSSIPSSLAFRSFDSECEVLRNVRHRNL 464
+ +P LA E + L N++ L
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRL 190
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 66 TIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLA-YNKLSGSFPSWIGVLSK 124
+ +L L LD+ + P G L+ + L + L + P I L++
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQ 278
Query: 125 LRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
L L L +P+ + L ++ ++ R
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-40
Identities = 86/433 (19%), Positives = 141/433 (32%), Gaps = 34/433 (7%)
Query: 28 LANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNF 87
L+ N I I Q +L++S + F + L L + N
Sbjct: 160 LSYN-YIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFN 216
Query: 88 HGHLPKELGQ-LRRLRVMSLAYNKLSGSF------PSWIGVLSKLRI--LRLDYNNFTGP 138
++ K Q L L V L + PS + L + I RL Y N
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276
Query: 139 IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK 198
L+ + + I + K +L + C L+ Q PT L LK
Sbjct: 277 DIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFPT--LDLPFLK 331
Query: 199 NLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGH-SLRNIEYLALSTNNLI 257
+L L NK S I + ++ L L N LS + ++ +L LS N I
Sbjct: 332 SLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Query: 258 GKIPNSITNATKLIGLDLGFNSFSGHIP-NTFGNLRHLSVLNVMMNNLTTESSSADQWSF 316
+ + +L LD ++ + F +L L L++ N +
Sbjct: 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI----- 443
Query: 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ 376
+L+ L +A N + + +L + L L TL
Sbjct: 444 ---FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD---LSKCQLEQISWGVFDTLH 497
Query: 377 QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436
+LQ + NNL L L+ L+ S N++ SL +L +N +
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Query: 437 SSSIPSSLAFRSF 449
+ I F +
Sbjct: 558 -ACICEHQKFLQW 569
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 5e-40
Identities = 72/427 (16%), Positives = 124/427 (29%), Gaps = 61/427 (14%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115
D L +P S ++D+S N L+ + L+ ++
Sbjct: 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVN 175
L L L L N P S L+ LE L A + IG L L
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 176 LGLWSCNLQG-QIPTEIGSLQNLKNLDLADNKLSGL------------------------ 210
L + + ++P +L NL ++DL+ N + +
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192
Query: 211 ---IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNA 267
I F + LTL N S + T +L + L + I
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252
Query: 268 TKLIGL--------DLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
+ + GL L + + F L ++S +++ ++ L
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY----------LED 302
Query: 320 LTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQ 379
+ +L++ L + L + + L N G+I L L
Sbjct: 303 VPKHFKWQSLSIIRCQLKQF-------PTLDLPFLKSLTLTMN--KGSISFKKVALPSLS 353
Query: 380 GFYVPENNLQGYVPHDLCHLERLNI--LNLSGNKLSGHIPPCLASLTSLRELHLGSNKLS 437
+ N L L ++ L+LS N + L L+ L + L
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLK 412
Query: 438 SSIPSSL 444
S
Sbjct: 413 RVTEFSA 419
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-36
Identities = 67/359 (18%), Positives = 115/359 (32%), Gaps = 17/359 (4%)
Query: 89 GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSR 148
G L + + + KLS P I S + + L +N S N S
Sbjct: 2 GSLNPCIEVVPNITY-QCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57
Query: 149 LEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208
L+ L I L L NL L +Q P L +L+NL + KL+
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 209 GLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNAT 268
L I + T++ L + N + +L N+ ++ LS N + N +
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 269 KL----IGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCR 324
+ + LD+ N F + L L + N ++ L+ L R
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK-TCLQNLAGLHVHR 235
Query: 325 NLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVP 384
+ L P ++ + F L + + L + +
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDE--FRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 385 ENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSS 443
+++ D+ + L++ +L P L L+ L L NK S S
Sbjct: 294 GVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNKGSISFKKV 347
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 5e-40
Identities = 69/242 (28%), Positives = 102/242 (42%), Gaps = 39/242 (16%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY---SHNYFLDIL 503
F +E E++ HRNL+++ C P + LV +M NGS+ L LD
Sbjct: 72 LQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWP 131
Query: 504 ERLNIMIDVGSALEYLRHGHSSAPIIHC------------------------EGEDSVTQ 539
+R I + L YL H H IIH + T
Sbjct: 132 KRQRIALGSARGLAYL-HDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTH 190
Query: 540 TTT--MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE---MSLRR 594
TT TIG++APEY S G S K DV+ YGV+L+E T +R D + L
Sbjct: 191 VTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLD 250
Query: 595 WVKESLPH-RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653
WVK L +L +VD +L + + + + ++ +AL C SP +R M++
Sbjct: 251 WVKGLLKEKKLEALVDVDL---QGNYKDE--EVEQLIQVALLCTQSSPMERPKMSEVVRM 305
Query: 654 LK 655
L+
Sbjct: 306 LE 307
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 6e-38
Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 41/246 (16%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY---SHNY 498
SS F++E E L RH +L+ +I C + L+ ++M NG+L++ LY
Sbjct: 75 SSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTM 134
Query: 499 FLDILERLNIMIDVGSALEYLRHGHSSAPIIH---------------------------C 531
+ +RL I I L YL H+ IIH
Sbjct: 135 SMSWEQRLEICIGAARGLHYL---HTR-AIIHRDVKSINILLDENFVPKITDFGISKKGT 190
Query: 532 EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMF-TGEM 590
E + + T T+GY+ PEY +G ++ K DVYS+GV+L E + + +
Sbjct: 191 ELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMV 250
Query: 591 SLRRWVKESLPHR-LSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649
+L W ES + L ++VD NL + + + L D A+ C S + R M D
Sbjct: 251 NLAEWAVESHNNGQLEQIVDPNLADK-----IRPESLRKFGDTAVKCLALSSEDRPSMGD 305
Query: 650 AAAKLK 655
KL+
Sbjct: 306 VLWKLE 311
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 7e-37
Identities = 79/412 (19%), Positives = 129/412 (31%), Gaps = 38/412 (9%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
L+LS L F + L LD+S L L + L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIG-GTIPSRIGNLR 171
LS L+ L N + +L L+ L N+I +P NL
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 172 KLVNLGLWSCNLQGQIPTEIGSLQNLKN----LDLADNKLSGLIPPTIFNISTMRILTLE 227
L +L L S +Q T++ L + LDL+ N ++ I P F + LTL
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208
Query: 228 SNQLSGRLPSTIGHSLRNIEYLAL------STNNLIGKIPNSITNATKLIGLDL---GFN 278
+N S + T L +E L + NL +++ L + +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 279 SFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGG 338
+ I + F L ++S +++ + + + +L L + G
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER----------VKDFSYNFGWQHLELVNCKFGQ 318
Query: 339 ILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ--GYVPHDL 396
+ + L F G S L L+ + N L G
Sbjct: 319 FPTLKLKSLK---------RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 397 CHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRS 448
L L+LS N + + L L L + L + F S
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLS 419
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 6e-35
Identities = 78/431 (18%), Positives = 139/431 (32%), Gaps = 47/431 (10%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNF-HGHLPKELGQLRRLRVMSLAYNKLS 112
L + L G+L L L+++ N LP+ L L + L+ NK+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 113 GSFPSWIGVLSKLRI----LRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR-I 167
+ + + VL ++ + L L N I F RL L N + I
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 168 GNLRKLVNLGLWSCNLQGQ---IPTEIGSLQNLKNLDLADNKLSGL------IPPTIFNI 218
L L L + + + +L+ L NL + + +L+ L I +
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281
Query: 219 STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN 278
+ + +L S + + +++E + S L L N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS------LKRLTFTSN 335
Query: 279 SFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLT----------------- 321
+ +L L L++ N L+ + + +SL
Sbjct: 336 KGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393
Query: 322 NCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGF 381
L +L + L + + +L + + L L+
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD---ISHTHTRVAFNGIFNGLSSLEVL 450
Query: 382 YVPENNLQGYVPHD-LCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSI 440
+ N+ Q D L L L+LS +L P SL+SL+ L++ SN+L S+
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSV 509
Query: 441 PSSLAFRSFDS 451
P F S
Sbjct: 510 PDG-IFDRLTS 519
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-33
Identities = 81/377 (21%), Positives = 126/377 (33%), Gaps = 21/377 (5%)
Query: 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTG 137
++ E NF+ +P L + + L++N L +L++L L
Sbjct: 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 138 PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNL 197
+ +LS L L N I L L L NL IG L+ L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 198 KNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS---T 253
K L++A N + P F N++ + L L SN++ + T L + L LS +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLS 185
Query: 254 NNLIGKIPNSITNATKLIGLDLGFNSFSGHIP-NTFGNLRHLSVLNVMMNNLTTESSSAD 312
N + I +L L L N S ++ L L V +++ +
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF--RNEGNL 243
Query: 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372
+ S+L NL+ L L +I F+ L N+ +F L + S
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIERVKDFSY 302
Query: 373 GT-LQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHL 431
Q L+ L+ L L + NK L SL L L
Sbjct: 303 NFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL 354
Query: 432 GSNKLSSSIPSSLAFRS 448
N LS S +
Sbjct: 355 SRNGLSFKGCCSQSDFG 371
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-22
Identities = 53/261 (20%), Positives = 95/261 (36%), Gaps = 13/261 (4%)
Query: 48 SRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLA 107
+ V++ +L + + + L++ F +L L+RL
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLT---FT 333
Query: 108 YNKLSGSFPSWIGVLSKLRILRLDYNNFT--GPIPNSLFNLSRLEMLRAEFNIIGGTIPS 165
NK + S + L L L L N + G S F + L+ L FN + T+ S
Sbjct: 334 SNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS 390
Query: 166 RIGNLRKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNISTMRIL 224
L +L +L NL+ + SL+NL LD++ +S++ +L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 225 TLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGH 283
+ N I LRN+ +L LS + ++ + + + L L++ N
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 284 IPNTFGNLRHLSVLNVMMNNL 304
F L L + + N
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPW 530
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 54/242 (22%), Positives = 93/242 (38%), Gaps = 43/242 (17%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF--LDILE 504
+ FD E +V+ +H NL++++ S+ D LV +MPNGSL L + L
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHM 134
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIH-------------------------CEGEDSVTQ 539
R I + + +L H IH + + T
Sbjct: 135 RCKIAQGAANGINFL---HE-NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV 190
Query: 540 TTT--MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVK 597
T+ + T YMAPE G ++ K D+YS+GV+L+E T DE L +
Sbjct: 191 MTSRIVGTTAYMAPEA-LRGEITPKSDIYSFGVVLLEIITGLPAVDEHR-EPQLLLDIKE 248
Query: 598 ESL--PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655
E + + +D + + + ++ +A C E +KR + L+
Sbjct: 249 EIEDEEKTIEDYIDKKM----NDADST--SVEAMYSVASQCLHEKKNKRPDIKKVQQLLQ 302
Query: 656 KI 657
++
Sbjct: 303 EM 304
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 5e-34
Identities = 65/376 (17%), Positives = 134/376 (35%), Gaps = 35/376 (9%)
Query: 66 TIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKL 125
I + + I + E L ++++ + + + + ++
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 126 RILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQ 184
+L L+ + ++ L FN I +P + N+ L L L +L
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 185 GQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSL 243
+P I + L L +++N L + T ++++ L L SN+L+ + +
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLI 185
Query: 244 RNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNN 303
++ + +S N L +++ + LD NS + L L + + NN
Sbjct: 186 PSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH---NN 237
Query: 304 LTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFND 363
LT + L N L + L+ N L I+ L+ +Y + N
Sbjct: 238 LTD----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLY---ISNNR 283
Query: 364 LNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASL 423
L + + L+ + N+L +V + +RL L L N + + ++
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STH 338
Query: 424 TSLRELHLGSNKLSSS 439
+L+ L L N +
Sbjct: 339 HTLKNLTLSHNDWDCN 354
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-27
Identities = 57/317 (17%), Positives = 113/317 (35%), Gaps = 26/317 (8%)
Query: 139 IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI-GSLQNL 197
I ++L + + L + + ++ ++P + S + +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71
Query: 198 KNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL 256
+ L+L D ++ I F T++ L + N + LP + ++ + L L N
Sbjct: 72 ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLE-RND 128
Query: 257 IGKIPNSI-TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSA---- 311
+ +P I N KL L + N+ +TF L L + N LT S
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188
Query: 312 ----DQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGT 367
++ LS+L + L + N + + + + +L N+L T
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-------NVELTILKLQHNNL--T 239
Query: 368 IPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLR 427
+ L + N L+ + H ++RL L +S N+L + + +L+
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298
Query: 428 ELHLGSNKLSSSIPSSL 444
L L N L + +
Sbjct: 299 VLDLSHNHL-LHVERNQ 314
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 7e-34
Identities = 74/431 (17%), Positives = 142/431 (32%), Gaps = 92/431 (21%)
Query: 66 TIPLHFGNLSFLVSLDISENNFHGHLPKELGQLR-------------RLRVMSLAYNKLS 112
+P+ N+ + + + + P G+ R + + L LS
Sbjct: 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPS------- 165
S P L L N+ T +P +L L + + P
Sbjct: 85 -SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139
Query: 166 --------RIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFN 217
+ N L + + + +L+ ++P +L+ + +N+L L P + N
Sbjct: 140 NNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLEEL--PELQN 193
Query: 218 ISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGF 277
+ + + ++N L + ++E + N L + + N L +
Sbjct: 194 LPFLTAIYADNNSLK-----KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADN 246
Query: 278 NSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNC--------RNLSNL 329
N +P+ +L L+V + N LT +FL N NL L
Sbjct: 247 NLLK-TLPDLPPSLEALNVRD---NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302
Query: 330 ALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ 389
+SN + + SL+ + + N L +P L++L N+L
Sbjct: 303 NASSNEIRSLCDLP-----PSLEELN---VSNNKLI-ELPALPPRLERL---IASFNHLA 350
Query: 390 GYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLT----------------SLRELHLGS 433
VP +L++L+ + N L P S+ +L++LH+ +
Sbjct: 351 -EVPELPQNLKQLH---VEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405
Query: 434 NKLSSSIPSSL 444
N L P
Sbjct: 406 NPL-REFPDIP 415
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-32
Identities = 73/384 (19%), Positives = 127/384 (33%), Gaps = 64/384 (16%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
L +S+ L +P N SFL +D+ N+ LP L + + N+L
Sbjct: 134 EYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE- 186
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
P + L L + D N+ +P+ +L + NI+ + NL L
Sbjct: 187 ELPE-LQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGN---NIL--EELPELQNLPFL 239
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
+ NL +P +L+ L++ DN L+ L ++ L + N S
Sbjct: 240 TTIYA-DNNLLKTLPDLPP---SLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFS- 290
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRH 293
L N+ YL S +N I + + + L L++ N +P L
Sbjct: 291 GLSELPP----NLYYLNAS-SNEIRSLCDLPPS---LEELNVSNNKLI-ELPALPPRLER 341
Query: 294 LSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQN 353
L N+L N + L + NPL P + +
Sbjct: 342 LIASF---NHLA---------EVPELPQNLKQLH---VEYNPLR-EFPDIPESVE----- 380
Query: 354 IYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS 413
+L N +P L+QL +V N L+ P +E L ++ ++
Sbjct: 381 ----DLRMNSHLAEVPELPQNLKQL---HVETNPLR-EFPDIPESVEDLR---MNSERVV 429
Query: 414 GHIPPCLASLTSLRELHLGSNKLS 437
+ L + +
Sbjct: 430 DPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 72/339 (21%), Positives = 121/339 (35%), Gaps = 57/339 (16%)
Query: 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVN 175
P + + L+ +N T +P N+ ++ P G R++
Sbjct: 5 PRNVS-NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 176 LGLWSCNLQG------------QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRI 223
L C + +P +L++L + N L+ L P ++ ++ +
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLTEL-PELPQSLKSLLV 118
Query: 224 LTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGH 283
LS P +EYL +S NN + K+P + N++ L +D+ NS
Sbjct: 119 DNNNLKALSDLPP--------LLEYLGVS-NNQLEKLP-ELQNSSFLKIIDVDNNSLK-K 167
Query: 284 IPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQL 343
+P+ +L ++ N N L L L N L+ + +N L LP L
Sbjct: 168 LPDLPPSLEFIAAGN---NQLEE----------LPELQNLPFLTAIYADNNSLKK-LPDL 213
Query: 344 IGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLN 403
+ L++I G N L + L L Y N L+ +P LE LN
Sbjct: 214 PLS----LESIV---AGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN 263
Query: 404 ILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPS 442
+ + L P SLT L + LS P+
Sbjct: 264 VRDNYLTDL----PELPQSLTFLDVSENIFSGLSELPPN 298
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 63/305 (20%), Positives = 98/305 (32%), Gaps = 53/305 (17%)
Query: 140 PNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKN 199
P ++ N E LR N+ +P N++ + P G + +
Sbjct: 5 PRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 200 LDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGK 259
L D L L + LS LP ++E L S N+L +
Sbjct: 63 SRLRDCLDRQA-----------HELELNNLGLS-SLPELPP----HLESLVASCNSLT-E 105
Query: 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
+P + L+ + + S P L L V N L L
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEK----------LPE 148
Query: 320 LTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQ 379
L N L + + +N L LP L + L+ I G N L + L L
Sbjct: 149 LQNSSFLKIIDVDNNSL-KKLPDLPPS----LEFIA---AGNNQL--EELPELQNLPFLT 198
Query: 380 GFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSS 439
Y N+L+ +P LE + N L P L +L L ++ +N L +
Sbjct: 199 AIYADNNSLK-KLPDLPLSLES---IVAGNNILE--ELPELQNLPFLTTIYADNNLL-KT 251
Query: 440 IPSSL 444
+P
Sbjct: 252 LPDLP 256
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 3e-16
Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 48/248 (19%)
Query: 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN--- 266
I P + + ++ S+ L+ +P + +++ + + P
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQRE 59
Query: 267 ----------ATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSF 316
+ L+L S +P +L L N+LT
Sbjct: 60 MAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLVASC---NSLT---------EL 106
Query: 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ 376
+ ++L L + P L+ + + N L +P +
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPP--------LLEYLG---VSNNQLE-KLP-ELQNSS 153
Query: 377 QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436
L+ V N+L+ +P LE + N+L P L +L L ++ +N L
Sbjct: 154 FLKIIDVDNNSLK-KLPDLPPSLEF---IAAGNNQLE--ELPELQNLPFLTAIYADNNSL 207
Query: 437 SSSIPSSL 444
+P
Sbjct: 208 -KKLPDLP 214
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-33
Identities = 52/285 (18%), Positives = 106/285 (37%), Gaps = 22/285 (7%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130
N + +++++ L ++ + L+ N LS + + +KL +L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTE 190
N + L +LS L L N + + + L + N+ ++
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS 117
Query: 191 IGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLA 250
Q KN+ LA+NK++ L S ++ L L+ N++ + + S +E+L
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 251 LSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSS 310
L N I + + KL LDL N + + F + ++ +++ N L
Sbjct: 176 LQ-YNFIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV----- 227
Query: 311 ADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIY 355
+L +NL + L N + + + +Q +
Sbjct: 228 ----LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 48/284 (16%), Positives = 99/284 (34%), Gaps = 20/284 (7%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
R ++D L + + + LD+S N +L +L +++L+ N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
L + + LS LR L L+ N L +E L A N I +
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR--G 119
Query: 171 RKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESN 229
+ N+ L + + + G ++ LDL N++ + + + T+ L L+ N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 230 QLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFG 289
+ + + ++ L LS +N + + +A + + L N I
Sbjct: 180 FIY-DVKGQV--VFAKLKTLDLS-SNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 290 NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALAS 333
++L ++ N + F S + ++ +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAKQTVKK 274
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 48/306 (15%), Positives = 96/306 (31%), Gaps = 50/306 (16%)
Query: 139 IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK 198
I N +R ++ + + + + S + + L L L ++ L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 199 NLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIG 258
L+L+ N L + ++ST+R L L +N + L +IE L + NN I
Sbjct: 62 LLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAA-NNNIS 112
Query: 259 KIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLS 318
++ S + L N + G + L++ +N + T + +
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE------- 163
Query: 319 SLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQL 378
+ L +L L N + + + +L
Sbjct: 164 LAASSDTLEHLNLQYNFI-----------------------------YDVKGQVV-FAKL 193
Query: 379 QGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438
+ + N L ++ + + ++L NKL I L +L L N
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251
Query: 439 SIPSSL 444
Sbjct: 252 GTLRDF 257
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 2e-33
Identities = 68/406 (16%), Positives = 137/406 (33%), Gaps = 28/406 (6%)
Query: 105 SLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIP 164
+ S PS G+ + ++ L L +N T L + L++L + + I TI
Sbjct: 11 DGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIE 66
Query: 165 SRI-GNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMR 222
+L L +L L +L + G L +LK L+L N L ++F N++ ++
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126
Query: 223 ILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSG 282
L + + + + L ++ L + +L S+ + + L L + +
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186
Query: 283 HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQ 342
+ L + L + NL S +SS L +L
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-- 244
Query: 343 LIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ--------QLQGFYVPENNLQGYVPH 394
+ + L + + N L P+ + ++ ++P+ L +
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304
Query: 395 DLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECE 454
LE++ + + +K+ L SL L L N + + A + +
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 455 VLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY-SHNYF 499
L + N ++ + + +L L S N F
Sbjct: 365 TL-VLSQ-NHLRSMQKTGEI--------LLTLKNLT-SLDISRNTF 399
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 8e-33
Identities = 72/412 (17%), Positives = 141/412 (34%), Gaps = 33/412 (8%)
Query: 44 ISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRV 103
+SC + + +IP G + + SLD+S N +L L+V
Sbjct: 2 LSCDASG----VCDGRSRSFT-SIP--SGLTAAMKSLDLSFNKITYIGHGDLRACANLQV 54
Query: 104 MSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFN-IIGG 161
+ L ++++ L L L L N+ + + +S F LS L+ L N
Sbjct: 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL 113
Query: 162 TIPSRIGNLRKLVNLGLWSCNLQGQIPTE-IGSLQNLKNLDLADNKLSGLIPPTIFNIST 220
+ S NL L L + + +I L +L L++ L ++ +I
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173
Query: 221 MRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSF 280
+ LTL ++ + L L ++ YL L NL + + +
Sbjct: 174 IHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 281 SGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGIL 340
S +F L L + ++ + +C + ++
Sbjct: 233 SVLTDESFNELLKLLRYILELSEV--------------EFDDCTLNGLGDFNPSES-DVV 277
Query: 341 PQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLE 400
+L + +++ ++ + L + T L++++ V + + HL+
Sbjct: 278 SELGKVETVTIRRLH---IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334
Query: 401 RLNILNLSGNKLSGHIPP---CLASLTSLRELHLGSNKLSSSIPSSLAFRSF 449
L L+LS N + C + SL+ L L N L S + +
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 8e-30
Identities = 67/406 (16%), Positives = 148/406 (36%), Gaps = 49/406 (12%)
Query: 56 LNLSDMGLGGTIPLH-FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGS 114
L + ++ I F L+ L L+I + + + L +R + ++L ++ +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 115 FPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLV 174
+ +LS +R L L N + L ++ L KL+
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247
Query: 175 NLGLWSCNL----------------QGQIPTEIGSLQ--NLKNLDLADNKLSGLIPPTIF 216
L + + + +E+G ++ ++ L + L +
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307
Query: 217 NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI---PNSITNATKLIGL 273
+ ++ +T+E++++ +P + L+++E+L LS N ++ + L L
Sbjct: 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366
Query: 274 DLGFNSFS--GHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLAL 331
L N L++L+ L++ N S + L L
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH---------PMPDSCQWPEKMRFLNL 417
Query: 332 ASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY 391
+S + + + Q + ++ N+L+ + + LQ+L Y+ N L+
Sbjct: 418 SSTGIRVV-------KTCIPQTLEVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLK-T 465
Query: 392 VPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKL 436
+P L ++ +S N+L +P LTSL+++ L +N
Sbjct: 466 LPDAS-LFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-33
Identities = 52/262 (19%), Positives = 94/262 (35%), Gaps = 61/262 (23%)
Query: 431 LGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLE 490
L F+ F E ++ N+ H N++K+ NP +V+EF+P G L
Sbjct: 52 LILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP--PRMVMEFVPCGDLY 109
Query: 491 KWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP-IIH-------------CEGEDS 536
L + + +L +M+D+ +EY+ + P I+H E
Sbjct: 110 HRLLDKAHPIKWSVKLRLMLDIALGIEYM---QNQNPPIVHRDLRSPNIFLQSLDENAPV 166
Query: 537 V-----------TQTTTMATIG---YMAPE--YGSEGIVSAKCDVYSYGVLLMETFTRKR 580
+ + +G +MAPE E + K D YS+ ++L T +
Sbjct: 167 CAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEG 226
Query: 581 PTDEMFTGEMSLRRWVKE-----SLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635
P DE G++ ++E ++P DC + ++
Sbjct: 227 PFDEYSYGKIKFINMIREEGLRPTIPE---------------------DCPPRLRNVIEL 265
Query: 636 CCMESPDKRMHMTDAAAKLKKI 657
C P KR H + +L ++
Sbjct: 266 CWSGDPKKRPHFSYIVKELSEL 287
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 7e-33
Identities = 79/448 (17%), Positives = 153/448 (34%), Gaps = 40/448 (8%)
Query: 80 LDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPI 139
N +P+ L RL L++N + S L +L++L L I
Sbjct: 9 AFYRFCNLT-QVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 140 PNSLF-NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQI--PTEIGSLQN 196
F NL L +L + I P L L L L+ C L + +L+
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124
Query: 197 LKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGH-SLRNIEYLALSTN 254
L LDL+ N++ L F +++++ + SNQ+ + + + + +L+ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 255 NLIGKIPNSITNATK------LIGLDLGFNSFSGHIPNTFGN------------LRHLSV 296
+L ++ L LD+ N ++ I F N H+
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 297 LNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYA 356
+N+ + + L ++ +L L+ + + ++ L+ +
Sbjct: 245 AGFGFHNIKDPDQNT-----FAGLAR-SSVRHLDLSHGFVFSLNSRVFETLK-DLKVLN- 296
Query: 357 FELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHI 416
L +N +N + L LQ + N L + L ++ ++L N ++
Sbjct: 297 --LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354
Query: 417 PPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDF 476
L L+ L L N L ++I + L + NL + S
Sbjct: 355 DQTFKFLEKLQTLDLRDNAL-TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 477 KALVLEFMPNG--SLEKWLYSHNYFLDI 502
+ L + + L+ + + N F
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSC 441
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-29
Identities = 87/451 (19%), Positives = 145/451 (32%), Gaps = 64/451 (14%)
Query: 48 SRHQRVTALNLSDMGLGGTI-PLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSL 106
+++ L L TI F NL L LD+ + + P L L + L
Sbjct: 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104
Query: 107 AYNKLSGSF--PSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTI 163
+ LS + + L L L L N + F L+ L+ + N I
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164
Query: 164 PSRIGNLR--KLVNLGLWSCNLQGQIPTEIGSLQN------LKNLDLADNKLSGLIPPTI 215
+ L+ L L + +L ++ + G N L+ LD++ N + I
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224
Query: 216 FN------------ISTMRILTLESNQLSGRLPSTI-GHSLRNIEYLALSTNNLIGKIPN 262
N + + + +T G + ++ +L LS +
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 263 SITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTN 322
L L+L +N + F L +L VLN+ N L SS
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN--------FYG 336
Query: 323 CRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFY 382
++ + L N + I Q LQ + L N L T+I + + +
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLD---LRDNAL-----TTIHFIPSIPDIF 387
Query: 383 VPENNLQGYVPHDLC---------------------HLERLNILNLSGNKLSGHIPPCLA 421
+ N L +L + L IL L+ N+ S
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 422 S-LTSLRELHLGSNKLSSSIPSSLAFRSFDS 451
S SL +L LG N L + + L + F+
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEG 478
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-24
Identities = 86/430 (20%), Positives = 136/430 (31%), Gaps = 62/430 (14%)
Query: 28 LANNWSISYPICSWAGISCGSRHQRVTALNLSDM------------GLGGTIPLHFGNLS 75
LA N S W R+ + L++S + +
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 76 FLVSLDISENNFHGHLPKELGQLRR--LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133
++ +N L R +R + L++ + L L++L L YN
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGS 193
+ + L L++L +N++G S L K+ + L ++
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360
Query: 194 LQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALST 253
L+ L+ LDL DN L+ TI I ++ + L N+L T+ + LS
Sbjct: 361 LEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL-----VTLPKINLTANLIHLSE 410
Query: 254 NNLIG-KIPNSITNATKLIGLDLGFNSFSGHIPN-TFGNLRHLSVLNVMMNNLTTESSSA 311
N L I + L L L N FS + T L L + N L +
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470
Query: 312 DQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTS 371
W L++ + L L N LN P
Sbjct: 471 LCWDVFEGLSHLQVLY-------------------------------LNHNYLNSLPPGV 499
Query: 372 IGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHL 431
L L+G + N L +DL L IL++S N+L P SL L +
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL-APNPD--VFVSLSVLDI 554
Query: 432 GSNKLSSSIP 441
NK
Sbjct: 555 THNKFICECE 564
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 8e-32
Identities = 45/263 (17%), Positives = 81/263 (30%), Gaps = 49/263 (18%)
Query: 442 SSLAFRSFDSECEV--LRNVRHRNLIKIISSCSNPDFKA----LVLEFMPNGSLEKWLYS 495
+S+ +E EV L ++H N+++ I + L+ F GSL +L
Sbjct: 56 PIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFL-- 113
Query: 496 HNYFLDILERLNIMIDVGSALEYL------RHGHSSAPIIH------------------- 530
+ E +I + L YL I H
Sbjct: 114 KANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIA 173
Query: 531 --------CEGEDSVTQTTTMATIGYMAPEYGSEGI-----VSAKCDVYSYGVLLMETFT 577
G+ + + T YMAPE I + D+Y+ G++L E +
Sbjct: 174 DFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS 233
Query: 578 RKRPTDEMFTGEMSLRRWVKESLP--HRLSEVVDTNLVREE-QAFSAKMDCLLSIMDLAL 634
R D M P + EVV R + + K + + +
Sbjct: 234 RCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIE 293
Query: 635 DCCMESPDKRMHMTDAAAKLKKI 657
+C + R+ ++ ++
Sbjct: 294 ECWDHDAEARLSAGCVGERITQM 316
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 46/256 (17%), Positives = 96/256 (37%), Gaps = 49/256 (19%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
L+ + P+ ++F +E VLR RH N++ + + P A+V ++ SL L+
Sbjct: 53 MLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQL-AIVTQWCEGSSLYHHLH 111
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC----------------------- 531
+ ++ + ++I ++YL H+ IIH
Sbjct: 112 ASETKFEMKKLIDIARQTARGMDYL---HAK-SIIHRDLKSNNIFLHEDNTVKIGDFGLA 167
Query: 532 ----EGEDSVTQTTTMATIGYMAPE---YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584
S +I +MAPE S + DVY++G++L E T + P
Sbjct: 168 TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN 227
Query: 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ + + E+V + + + + +C + L +C + D+R
Sbjct: 228 INNRDQII-------------EMVGRGSLSPDLS-KVRSNCPKRMKRLMAECLKKKRDER 273
Query: 645 MHMTDAAAKLKKIKVK 660
A+++++ +
Sbjct: 274 PSFPRILAEIEELARE 289
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-31
Identities = 51/254 (20%), Positives = 80/254 (31%), Gaps = 52/254 (20%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
+ S + E ++ ++H N+I + C LV+EF G L + L
Sbjct: 39 RHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVL- 97
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC----------------EGEDSV- 537
+ +N + + + YL H + PIIH + + +
Sbjct: 98 -SGKRIPPDILVNWAVQIARGMNYL-HDEAIVPIIHRDLKSSNILILQKVENGDLSNKIL 155
Query: 538 -----------TQTTTMA---TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583
+TT M+ +MAPE + S DV+SYGVLL E T + P
Sbjct: 156 KITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFR 215
Query: 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643
+ + V L C L DC P
Sbjct: 216 GIDGLAV-------------AYGVAMNKL-ALPIP----STCPEPFAKLMEDCWNPDPHS 257
Query: 644 RMHMTDAAAKLKKI 657
R T+ +L I
Sbjct: 258 RPSFTNILDQLTTI 271
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-31
Identities = 62/355 (17%), Positives = 116/355 (32%), Gaps = 57/355 (16%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
+T L + D L ++P L +L++S N LP L L + S
Sbjct: 61 AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
L + S L L + N T +P L L + + ++P+ L
Sbjct: 116 LP-------ALPSGLCKLWIFGNQLTS-LPVLPPGLQELSVSDNQLA----SLPALPSEL 163
Query: 171 RKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFN------------- 217
KL N +P L+ L ++DN+L+ L P
Sbjct: 164 CKL----WAYNNQLTSLPMLPS---GLQELSVSDNQLASL-PTLPSELYKLWAYNNRLTS 215
Query: 218 ----ISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGL 273
S ++ L + N+L+ LP ++ L +S N + +P + L+ L
Sbjct: 216 LPALPSGLKELIVSGNRLT-SLPVLPS----ELKELMVS-GNRLTSLPMLPSG---LLSL 266
Query: 274 DLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALAS 333
+ N + +P + +L + +N+ N L+ + A + +T+ S +
Sbjct: 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR-----EITSAPGYSGPIIRF 320
Query: 334 NPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNL 388
+ G P+ + + G F + + L
Sbjct: 321 DMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-30
Identities = 77/366 (21%), Positives = 120/366 (32%), Gaps = 81/366 (22%)
Query: 77 LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT 136
L++ E+ LP L + + + N L+ S P+ +LR L + N T
Sbjct: 42 NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT 94
Query: 137 GPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQN 196
+P L L + +P+ L KL + N +P
Sbjct: 95 S-LPVLPPGLLELSIFSNPLT----HLPALPSGLCKL-WI---FGNQLTSLPVLPP---G 142
Query: 197 LKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL 256
L+ L ++DN+L+ L P + L +NQL+
Sbjct: 143 LQELSVSDNQLASL-PALPSE---LCKLWAYNNQLT------------------------ 174
Query: 257 IGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSF 316
+P + L L + N + +P L L N N LT+
Sbjct: 175 --SLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYN---NRLTS---------- 215
Query: 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ 376
L +L L L ++ N L LP L L+ + + N L ++P L
Sbjct: 216 LPAL--PSGLKELIVSGNRLTS-LPVLPSE----LKELM---VSGNRLT-SLPMLPSGLL 264
Query: 377 QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436
L V N L +P L HL +NL GN LS L +TS +
Sbjct: 265 SL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320
Query: 437 SSSIPS 442
+ S
Sbjct: 321 DMAGAS 326
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 5e-22
Identities = 53/251 (21%), Positives = 91/251 (36%), Gaps = 49/251 (19%)
Query: 194 LQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALST 253
L++ ++ L+ L P + + L + N L+ LP+ + L +S
Sbjct: 39 NNGNAVLNVGESGLTTL-PDCLPA--HITTLVIPDNNLT-SLPALPP----ELRTLEVS- 89
Query: 254 NNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQ 313
N + +P +L H+P L L + N LT+
Sbjct: 90 GNQLTSLPVLPPGLLELSIFSNPLT----HLPALPSGLCKLWIFG---NQLTSLPVL--- 139
Query: 314 WSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIG 373
L L+++ N L LP L L ++ N L ++P
Sbjct: 140 ---------PPGLQELSVSDNQLAS-LPALPSE----LCKLW---AYNNQLT-SLPMLPS 181
Query: 374 TLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGS 433
LQ+L V +N L +P L +L N N+L+ +P A + L+EL +
Sbjct: 182 GLQEL---SVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLP---ALPSGLKELIVSG 230
Query: 434 NKLSSSIPSSL 444
N+L +S+P
Sbjct: 231 NRL-TSLPVLP 240
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 3e-17
Identities = 51/273 (18%), Positives = 91/273 (33%), Gaps = 32/273 (11%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
L + L ++P+ L L +S+N LP +L +L N+L+
Sbjct: 164 CKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKL---WAYNNRLT- 214
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
S P+ L+ L + N T +P S L+ L N + ++P L L
Sbjct: 215 SLPALPS---GLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLT-SLPMLPSGLLSL 266
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
++ L ++P + L + ++L N LS T+ + + S +
Sbjct: 267 S---VYRNQLT-RLPESLIHLSSETTVNLEGNPLSER---TLQALREITSAPGYSGPII- 318
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRH 293
R + R L L+ + + +P + G N
Sbjct: 319 RFDMAGASAPRETRALHLAAADWL--VPAREGEPAPADRWHM-----FGQEDNADAFSLF 371
Query: 294 LSVLNVMMNNLTTESSSADQWSFLSSLTNCRNL 326
L L+ N + A S+L+ L L
Sbjct: 372 LDRLSETENFIKDAGFKAQISSWLAQLAEDEAL 404
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 5e-31
Identities = 53/240 (22%), Positives = 86/240 (35%), Gaps = 45/240 (18%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--YFLDILE 504
++F E L V H N++K+ +C NP LV+E+ GSL L+ +
Sbjct: 46 KAFIVELRQLSRVNHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVLHGAEPLPYYTAAH 103
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHC---------EGEDSV-----------TQTTTMA 544
++ + + YL H +IH +V QT
Sbjct: 104 AMSWCLQCSQGVAYL-HSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTN 162
Query: 545 TIG---YMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP 601
G +MAPE S KCDV+S+G++L E TR++P DE+ + V
Sbjct: 163 NKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT- 221
Query: 602 HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVKF 661
R ++ + I L C + P +R M + + + F
Sbjct: 222 -RP-PLIK--------------NLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF 265
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 5e-31
Identities = 76/490 (15%), Positives = 159/490 (32%), Gaps = 71/490 (14%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLAYNKLSGS 114
+++ L+ + + LP L R++ +++L ++
Sbjct: 32 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI 90
Query: 115 FPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLV 174
++ L + +N +P +F N+ L
Sbjct: 91 DTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQ-----------------------NVPLLT 126
Query: 175 NLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
L L +L +P I + L L +++N L + T ++++ L L SN+L+
Sbjct: 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT- 184
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRH 293
+ + ++ + +S N L +++ + LD NS + L
Sbjct: 185 HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTI 236
Query: 294 LSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQN 353
L + + NNLT + L N L + L+ N L I+ L+
Sbjct: 237 LKLQH---NNLTD----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLER 282
Query: 354 IYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS 413
+Y + N L + + L+ + N+L +V + +RL L L N +
Sbjct: 283 LY---ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337
Query: 414 GHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSN 473
+ ++ +L+ L L N +S + RNV + C
Sbjct: 338 -TLKL--STHHTLKNLTLSHNDWDC-----------NSLRALFRNVARPAVDDADQHCKI 383
Query: 474 P-DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE 532
+ + + L + ++E++ SA + + S + I +
Sbjct: 384 DYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQ 443
Query: 533 GEDSVTQTTT 542
G +
Sbjct: 444 GGVPLQGNEQ 453
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-25
Identities = 57/317 (17%), Positives = 113/317 (35%), Gaps = 26/317 (8%)
Query: 139 IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI-GSLQNL 197
I ++L + + L + + ++ ++P + S + +
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77
Query: 198 KNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL 256
+ L+L D ++ I F T++ L + N + LP + ++ + L L N
Sbjct: 78 ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLE-RND 134
Query: 257 IGKIPNSI-TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSA---- 311
+ +P I N KL L + N+ +TF L L + N LT S
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194
Query: 312 ----DQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGT 367
++ LS+L + L + N + + + + +L N+L T
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-------NVELTILKLQHNNL--T 245
Query: 368 IPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLR 427
+ L + N L+ + H ++RL L +S N+L + + +L+
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304
Query: 428 ELHLGSNKLSSSIPSSL 444
L L N L + +
Sbjct: 305 VLDLSHNHL-LHVERNQ 320
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-24
Identities = 59/397 (14%), Positives = 120/397 (30%), Gaps = 63/397 (15%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
+ + + + + L++++ ++ + + +N
Sbjct: 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-G 168
+ P + L +L L+ N+ + +P +F N +L L N + I
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ 168
Query: 169 NLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLES 228
L NL L S L + + + +L + +++ N LS T+ + L
Sbjct: 169 ATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASH 220
Query: 229 NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTF 288
N ++ + + L L NNL + N L+ +DL +N + + F
Sbjct: 221 NSIN-VVRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274
Query: 289 GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFS 348
++ L L + N L + L L L+ N L
Sbjct: 275 VKMQRLERLYISNNRLVALN---------LYGQPIPTLKVLDLSHNHL------------ 313
Query: 349 ASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLS 408
+ + +L+ Y+ N++ + L L LS
Sbjct: 314 -----------------LHVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLS 353
Query: 409 GNKLSGHIPPCLASL-TSLRELHLGSNKLSSSIPSSL 444
N L +L ++ + I L
Sbjct: 354 HNDWD---CNSLRALFRNVARPAVDDADQHCKIDYQL 387
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 55/266 (20%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
L + F E +++ +RH N++ + + + P ++V E++ GSL + L+
Sbjct: 67 ILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLH 126
Query: 495 SHN--YFLDILERLNIMIDVGSALEYLRHGHSSAP-IIHC-------------------- 531
LD RL++ DV + YL H+ P I+H
Sbjct: 127 KSGAREQLDERRRLSMAYDVAKGMNYL---HNRNPPIVHRNLKSPNLLVDKKYTVKVCDF 183
Query: 532 -----EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMF 586
+ ++ + T +MAPE + + K DVYS+GV+L E T ++P +
Sbjct: 184 GLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN 243
Query: 587 TGEMSLRRWVKESLPHRLSEVVDTNL---VREEQAFSAKMDCLLSIMDLALDCCMESPDK 643
++ V + + + + C P K
Sbjct: 244 PAQVVA-------------AVGFKCKRLEIPR--------NLNPQVAAIIEGCWTNEPWK 282
Query: 644 RMHMTDAAAKLKKIKVKFLDDVAASS 669
R L+ + + S
Sbjct: 283 RPSFATIMDLLRPLIKSAVPPPNRSD 308
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 56/253 (22%), Positives = 92/253 (36%), Gaps = 48/253 (18%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFK--ALVLEFMPNGSLEKW 492
L S+ R F+ EC LR H N++ ++ +C +P L+ +MP GSL
Sbjct: 40 VLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNV 99
Query: 493 LYSH-NYFLDILERLNIMIDVGSALEYLRHGHSSAP-IIHCE--------GED------- 535
L+ N+ +D + + +D+ + +L H+ P I ED
Sbjct: 100 LHEGTNFVVDQSQAVKFALDMARGMAFL---HTLEPLIPRHALNSRSVMIDEDMTARISM 156
Query: 536 -----SVTQTTTMATIGYMAPE---YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFT 587
S M ++APE E D++S+ VLL E TR+ P ++
Sbjct: 157 ADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN 216
Query: 588 GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647
E+ ++ V L R + + L C E P KR
Sbjct: 217 MEIGMK-------------VALEGL-R----PTIPPGISPHVSKLMKICMNEDPAKRPKF 258
Query: 648 TDAAAKLKKIKVK 660
L+K++ K
Sbjct: 259 DMIVPILEKMQDK 271
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 60/262 (22%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
+ + ++F E R RH N++ + +C +P A++ +L +
Sbjct: 62 LIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVR 121
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH------------------------ 530
LD+ + I ++ + YL H+ I+H
Sbjct: 122 DAKIVLDVNKTRQIAQEIVKGMGYL---HAK-GILHKDLKSKNVFYDNGKVVITDFGLFS 177
Query: 531 ----CEGEDSVTQTTTMA-TIGYMAPE---------YGSEGIVSAKCDVYSYGVLLMETF 576
+ + + ++APE + S DV++ G + E
Sbjct: 178 ISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELH 237
Query: 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDC 636
R+ P + + T + +++ I D+ L C
Sbjct: 238 AREWPFKTQ--------------PAEAIIWQMGTGMKPNL----SQIGMGKEISDILLFC 279
Query: 637 CMESPDKRMHMTDAAAKLKKIK 658
++R T L+K+
Sbjct: 280 WAFEQEERPTFTKLMDMLEKLP 301
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-28
Identities = 48/257 (18%), Positives = 83/257 (32%), Gaps = 60/257 (23%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL 500
R+F E +V+R + H N++K I + E++ G+L + S +
Sbjct: 46 FDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQY 105
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIH------------------------------ 530
+R++ D+ S + YL HS IIH
Sbjct: 106 PWSQRVSFAKDIASGMAYL---HSM-NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDE 161
Query: 531 ---------CEGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
+ D + T + +MAPE + K DV+S+G++L E R
Sbjct: 162 KTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNA 221
Query: 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641
+ M V+ L +C S + + CC P
Sbjct: 222 DPDYLPRTMDFGLNVRGFL--DR---------------YCPPNCPPSFFPITVRCCDLDP 264
Query: 642 DKRMHMTDAAAKLKKIK 658
+KR L+ ++
Sbjct: 265 EKRPSFVKLEHWLETLR 281
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 73/362 (20%), Positives = 130/362 (35%), Gaps = 46/362 (12%)
Query: 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGP 138
++ F +P+ + R++ L N++ L L L+ N +
Sbjct: 15 AVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 139 IPNSLFNLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQIPTEI-GSLQN 196
P + NL L L N + IP + L L L + + + + L N
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYN 129
Query: 197 LKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL 256
LK+L++ DN L + ++++ LTLE L+ +P+ L + L L N+
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188
Query: 257 IGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSF 316
S +L L++ + + +L+ L++ NLT A
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA----- 243
Query: 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ 376
+ + L L L+ NP+ I ++ L
Sbjct: 244 ---VRHLVYLRFLNLSYNPISTIEGSMLHE----------------------------LL 272
Query: 377 QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNK 435
+LQ + L P+ L L +LN+SGN+L+ + S+ +L L L SN
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNP 331
Query: 436 LS 437
L+
Sbjct: 332 LA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 70/337 (20%), Positives = 130/337 (38%), Gaps = 49/337 (14%)
Query: 120 GVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGL 178
G+ ++ R+L L N + + LE L NI+ + NL L LGL
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87
Query: 179 WSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLP 236
S L+ IP + L NL LD+++NK+ ++ +F ++ ++ L + N L +
Sbjct: 88 RSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YIS 144
Query: 237 STIGHSLRNIEYLALSTNNLIGKIP-NSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS 295
L ++E L L + IP ++++ LI L L + + +F L L
Sbjct: 145 HRAFSGLNSLEQLTLE-KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203
Query: 296 VLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIY 355
VL + + NL++L++ L + + + L+ +
Sbjct: 204 VLEISHWPYLDTMTPN--------CLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLN 254
Query: 356 AFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGH 415
L +N ++ + + L L RL + L G +L+
Sbjct: 255 ---LSYNPIS----------------TIEGSMLHE--------LLRLQEIQLVGGQLA-V 286
Query: 416 IPPC-LASLTSLRELHLGSNKLSSSIPSSLAFRSFDS 451
+ P L LR L++ N+L +++ S F S +
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQL-TTLEES-VFHSVGN 321
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 5e-20
Identities = 57/292 (19%), Positives = 94/292 (32%), Gaps = 54/292 (18%)
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN 245
+P I + LDL N++ L + + L L N +S + ++L N
Sbjct: 25 AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81
Query: 246 IEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304
+ L L +N + IP + T + L LD+ N + F +L +L L V N+L
Sbjct: 82 LRTLGLR-SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 305 TTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDL 364
S A + +L L L L I + + +
Sbjct: 141 VYISHRA--------FSGLNSLEQLTLEKCNLTSIPTEALSH------------------ 174
Query: 365 NGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLT 424
L L + N+ + L RL +L +S + P
Sbjct: 175 ----------LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Query: 425 SLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRH----RNLIKIISSCS 472
+L L + L +++P A R L +R N I I
Sbjct: 225 NLTSLSITHCNL-TAVPYL-AVRH-------LVYLRFLNLSYNPISTIEGSM 267
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 10/184 (5%)
Query: 54 TALNLSDMGLGGTIPLH-FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
L L L +IP +L L+ L + N + +L RL+V+ +++
Sbjct: 155 EQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNL 170
+ L L + + N T +P +L L L +N I TI + L
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHEL 271
Query: 171 RKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLES 228
+L + L L + L L+ L+++ N+L+ + ++F ++ + L L+S
Sbjct: 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDS 329
Query: 229 NQLS 232
N L+
Sbjct: 330 NPLA 333
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 8e-26
Identities = 71/363 (19%), Positives = 142/363 (39%), Gaps = 34/363 (9%)
Query: 101 LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNII 159
+ + L+ N ++ + L L+ L+++ I N+ F LS L +L+ ++N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 160 GGTIPSRI-GNLRKLVNLGLWSCNLQG-QIPTEI-GSLQNLKNLDLADNKLSGLIPPTIF 216
+ + L L L L CNL G + L +L+ L L DN + + P + F
Sbjct: 92 -LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 217 -NISTMRILTLESNQLSGRLPSTI----------GHSLRNIEYLALSTNNLIGKIPNSIT 265
N+ +L L N++ + L +I ++ L + +
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 266 NATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNC-- 323
T + LDL N F + F + + + ++ + + S+ + N
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 324 -----RNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI-GTLQQ 377
+ L+ + + +L + +F+ L+ + L N++N I + L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLT---LAQNEIN-KIDDNAFWGLTH 324
Query: 378 LQGFYVPENNLQGYVPHDLCH-LERLNILNLSGNKLSGHIPPCL-ASLTSLRELHLGSNK 435
L + +N L + + L++L +L+LS N + + L +L+EL L +N+
Sbjct: 325 LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382
Query: 436 LSS 438
L S
Sbjct: 383 LKS 385
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 7e-24
Identities = 64/366 (17%), Positives = 123/366 (33%), Gaps = 53/366 (14%)
Query: 125 LRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNL 183
+ + L N+ S L L+ L+ E G I + L L+ L L
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 184 QGQIPTEI-GSLQNLKNLDLADNKL-SGLIPPTIF-NISTMRILTLESNQLSGRLPSTIG 240
Q+ T L NL+ L L L ++ F ++++ +L L N + P++
Sbjct: 92 L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 241 HSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVM 300
++R L L+ N + I +F G +H ++L +
Sbjct: 151 LNMRRFHVLDLT-FNKVKSICEED------------LLNFQG---------KHFTLLRLS 188
Query: 301 MNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQ-------- 352
L + W + +++ L L+ N + + + A +
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248
Query: 353 -NIYAFELGFNDLNGTIPTSIGTLQ--QLQGFYVPENNLQGYVPHDLCHLERLNILNLSG 409
G + + L+ ++ + ++ + + H L L L+
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 410 NKLSGHIPP-CLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVR----HRNL 464
N+++ I LT L +L+L N L SI S R F++ L + N
Sbjct: 309 NEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDS----RMFEN----LDKLEVLDLSYNH 358
Query: 465 IKIISS 470
I+ +
Sbjct: 359 IRALGD 364
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 8e-24
Identities = 80/432 (18%), Positives = 139/432 (32%), Gaps = 78/432 (18%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKEL-GQLRRLRVMSLAYNKL 111
V ++LS + F L L L + + + L L ++ L YN+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 112 S----GSFPSWIGVLSKLRILRLDYNNFTG-PIPNSLF-NLSRLEMLRAEFNIIGGTIPS 165
G+F L+ L +L L N G + + F L+ LEML N I P+
Sbjct: 92 LQLETGAFNG----LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147
Query: 166 RI-GNLRKLVNLGL----WSC-------NLQGQIPTEIGSLQNLKNLDLADNKLSGLIPP 213
N+R+ L L N QG+ T + L ++ D+ + L
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCG 206
Query: 214 TIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN------- 266
F +++ L L N + ++ + +L +N +
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266
Query: 267 -------ATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
A+ + DL + + + F + L L + N + +A
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA-------- 318
Query: 320 LTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQ 379
+L L L+ N LG I F L +L+
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDS---RMFEN-------------------------LDKLE 350
Query: 380 GFYVPENNLQGYVPHDL-CHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKLS 437
+ N+++ + L L L L N+L +P LTSL+++ L +N
Sbjct: 351 VLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408
Query: 438 SSIPSSLAFRSF 449
S P +
Sbjct: 409 CSCPRIDYLSRW 420
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 8e-16
Identities = 40/267 (14%), Positives = 82/267 (30%), Gaps = 32/267 (11%)
Query: 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255
++ +DL+ N ++ L + + ++ L +E + + L ++ L L N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD-YN 89
Query: 256 LIGKIPNSI-TNATKLIGLDLGFNSFSGHI--PNTFGNLRHLSVLNVMMNNLTTESSSAD 312
++ L L L + G + N F L L +L + NN+
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK----KIQ 145
Query: 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSA------SLQNIYAFELGFNDLNG 366
SF ++ L L N + I + + NF L +I ++ L
Sbjct: 146 PASFFLNMR---RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202
Query: 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLN-----ILNLSGNKLSGHIPPCLA 421
+ + + N + + IL+ S N S
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262
Query: 422 SL----------TSLRELHLGSNKLSS 438
+ ++ L +K+ +
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFA 289
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 49/280 (17%), Positives = 90/280 (32%), Gaps = 25/280 (8%)
Query: 219 STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIP-NSITNATKLIGLDLGF 277
+ + + L N ++ L T L+++++L + I N+ + LI L L +
Sbjct: 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 278 NSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG 337
N F F L +L VL + NL S + + L+SL L L N +
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM------LVLRDNNIK 142
Query: 338 GILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC 397
I P + L FN + +I L QG + L
Sbjct: 143 KIQPASFFLNMRRFHVLD---LTFNKVK-SICE--EDLLNFQGKHFTLLRLS-------- 188
Query: 398 HLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLR 457
+ + +++ L TS+ L L N S+ ++ + L
Sbjct: 189 ---SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245
Query: 458 NVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN 497
N+ + D + + ++ S +
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 55/315 (17%), Positives = 112/315 (35%), Gaps = 35/315 (11%)
Query: 39 CSWAGISCGSRH---------QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHG 89
C + C L+L + + F NL L +L + N
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 90 HLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSR 148
P L +L + L+ N+L P + L+ LR+ N T + S+F L++
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITK-VRKSVFNGLNQ 146
Query: 149 LEMLRAEFN-IIGGTIPSRI-GNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNK 206
+ ++ N + I + ++KL + + N+ IP G +L L L NK
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNK 203
Query: 207 LSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSIT 265
++ + ++ + L L N +S + + + ++ L L+ N L+ K+P +
Sbjct: 204 ITK-VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260
Query: 266 NATKLIGLDLGFNSFSG------HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
+ + + L N+ S P S +++ N + + +
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV-- 318
Query: 320 LTNCRNLSNLALASN 334
+ + L +
Sbjct: 319 ----YVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 66/340 (19%), Positives = 125/340 (36%), Gaps = 47/340 (13%)
Query: 101 LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIG 160
LRV+ + L P + +L L N T NL L L N I
Sbjct: 33 LRVVQCSDLGLE-KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 161 GTIPSRI-GNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NI 218
I L KL L L L+ ++P + L+ L + +N+++ + ++F +
Sbjct: 90 -KISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEIT-KVRKSVFNGL 144
Query: 219 STMRILTLESNQL-SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGF 277
+ M ++ L +N L S + + ++ + Y+ ++ N I IP + L L L
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDG 201
Query: 278 NSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG 337
N + + L +L+ L + N+++ + + L N +L L L +N L
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--------LANTPHLRELHLNNNKLV 253
Query: 338 GILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC 397
+ L + +Q +Y L N+++ + N+ P
Sbjct: 254 KVPGGLADH--KYIQVVY---LHNNNIS----------------AIGSNDFCP--PGYNT 290
Query: 398 HLERLNILNLSGNKLSGH-IPPCL-ASLTSLRELHLGSNK 435
+ ++L N + I P + + LG+ K
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 60/269 (22%), Positives = 101/269 (37%), Gaps = 34/269 (12%)
Query: 194 LQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252
L+NL L L +NK+S I P F + + L L NQL LP + ++ L +
Sbjct: 75 LKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLK-ELPE---KMPKTLQELRVH 129
Query: 253 TNNLIGKIPNSI-TNATKLIGLDLGFNSF-SGHIP-NTFGNLRHLSVLNVMMNNLTTESS 309
N I K+ S+ ++I ++LG N S I F ++ LS + + N+TT
Sbjct: 130 -ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188
Query: 310 SADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP 369
+L+ L L N + + + + +L + L FN ++
Sbjct: 189 GL-----------PPSLTELHLDGNKITKVDAASLKGLN-NLAKLG---LSFNSISAVDN 233
Query: 370 TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-------CLAS 422
S+ L+ ++ N L VP L + + ++ L N +S I
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTK 291
Query: 423 LTSLRELHLGSNKLSSSIPSSLAFRSFDS 451
S + L SN + FR
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYV 320
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 46/260 (17%)
Query: 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNI 246
+P ++ + LDL +NK++ + N+ + L L +N++S ++ L +
Sbjct: 46 VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKL 102
Query: 247 EYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306
E L LS N + ++P + L L + N + + F L + V+ + N L +
Sbjct: 103 ERLYLS-KNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 307 ESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNG 366
+ + LS + +A + I
Sbjct: 160 SGIENG------AFQGMKKLSYIRIADTNITTIPQ------------------------- 188
Query: 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTS 425
G L ++ N + L L L L LS N +S + LA+
Sbjct: 189 ------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPH 241
Query: 426 LRELHLGSNKLSSSIPSSLA 445
LRELHL +NKL +P LA
Sbjct: 242 LRELHLNNNKL-VKVPGGLA 260
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 8e-25
Identities = 62/306 (20%), Positives = 105/306 (34%), Gaps = 65/306 (21%)
Query: 141 NSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI--GSLQNLK 198
N+ F+LS+ + +N I GT K L + + + + +
Sbjct: 8 NNNFSLSQN----SFYNTISGTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLINQFS 62
Query: 199 NLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIG 258
L L LS L P + + +L + N L LP ++EYL +N +
Sbjct: 63 ELQLNRLNLSSL-PDNLP--PQITVLEITQNALI-SLPELPA----SLEYLDAC-DNRLS 113
Query: 259 KIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLS 318
+P + L LD+ N + +P L +++ N N LT
Sbjct: 114 TLPELPAS---LKHLDVDNNQLT-MLPELPALLEYINADN---NQLTMLPEL-------- 158
Query: 319 SLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQL 378
+L L++ +N L LP+L + L+ + + N L ++P
Sbjct: 159 ----PTSLEVLSVRNNQLTF-LPELPES----LEALD---VSTNLLE-SLPAVPVRNHHS 205
Query: 379 QGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438
+ E N+++ HIP + SL + L N LSS
Sbjct: 206 E--------------------ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244
Query: 439 SIPSSL 444
I SL
Sbjct: 245 RIRESL 250
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-23
Identities = 55/284 (19%), Positives = 99/284 (34%), Gaps = 34/284 (11%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
+ + L L+ + L ++P + + L+I++N LP+ L L N+
Sbjct: 59 NQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASLEYL---DACDNR 111
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
LS + P L+ L +D N T +P + LE + A+ N + +P +L
Sbjct: 112 LS-TLPELPA---SLKHLDVDNNQLTM-LPEL---PALLEYINADNNQL-TMLPELPTSL 162
Query: 171 RKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNI----STMRILTL 226
L ++ N +P ++L+ LD++ N L L P T
Sbjct: 163 EVL-SV---RNNQLTFLP---ELPESLEALDVSTNLLESL-PAVPVRNHHSEETEIFFRC 214
Query: 227 ESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPN 286
N+++ +P I L + L N L +I S++ T FS
Sbjct: 215 RENRIT-HIPENILS-LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272
Query: 287 TFGNLRHLSVLNVMMNNLTTESSS--ADQWSFLSSLTNCRNLSN 328
N H + + + S + W + S
Sbjct: 273 Q--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 2e-21
Identities = 62/389 (15%), Positives = 135/389 (34%), Gaps = 64/389 (16%)
Query: 66 TIPLHFGNLSFLVSLDISEN---NFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVL 122
+I L N L S + N + + + + N+ + +
Sbjct: 2 SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58
Query: 123 SKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN 182
++ L+L+ N + +P++L ++ +L N + ++P +L L + N
Sbjct: 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNAL-ISLPELPASLEYL-DA---CDN 110
Query: 183 LQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHS 242
+P +LK+LD+ +N+L+ L P + + + ++NQL+ LP
Sbjct: 111 RLSTLPELPA---SLKHLDVDNNQLTML-PEL---PALLEYINADNNQLT-MLPE----L 158
Query: 243 LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS----VLN 298
++E L++ NN + +P + L LD+ N +P H
Sbjct: 159 PTSLEVLSVR-NNQLTFLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFR 213
Query: 299 VMMNNLTTESSSADQWSFL-SSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAF 357
N +T + ++ + + L NPL + + + + + + +
Sbjct: 214 CRENRITH----------IPENILSLDPTCTIILEDNPLSSRIRESLSQQT-AQPDYHGP 262
Query: 358 ELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ---------GYVPHDLCHLERLNILNLS 408
+ F+ +G T L + PEN + H L+ L+ +
Sbjct: 263 RIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDT 322
Query: 409 GNKLSG--------HIPPCLASLTSLREL 429
+ + L++ LR+
Sbjct: 323 VSARNTSGFREQVAAWLEKLSASAELRQQ 351
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 1e-18
Identities = 49/296 (16%), Positives = 88/296 (29%), Gaps = 47/296 (15%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
++T L ++ L ++P +L LD +N LP+ L+ L + N+
Sbjct: 80 PQITVLEITQNALI-SLPELPASLE---YLDACDNRLS-TLPELPASLKHLD---VDNNQ 131
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNL-----------------SRLEMLR 153
L+ P L + D N T +P +L LE L
Sbjct: 132 LT-MLPELPA---LLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTFLPELPESLEALD 186
Query: 154 AEFNIIGGTIPSRIGNLRKLVNLGLW---SCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210
N++ ++P+ ++ N IP I SL + L DN LS
Sbjct: 187 VSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245
Query: 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKL 270
I ++ + S + T + ++
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD---AVTAWFPENKQSDVSQIWHA 302
Query: 271 IGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNL 326
+ N+FS L L+ ++ T ++L L+ L
Sbjct: 303 FEHEEHANTFS----------AFLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 52/274 (18%), Positives = 94/274 (34%), Gaps = 60/274 (21%)
Query: 442 SSLAFRSFDSECEV--LRNVRHRNLIKIISSCSNPDFKA-----LVLEFMPNGSLEKWLY 494
S ++F +E + + + H N+ + I LV+E+ PNGSL K+L
Sbjct: 45 SFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS 104
Query: 495 SHNYFLDILERLNIMIDVGSALEYL-----RHGHSSAPIIH------------------- 530
H D + + V L YL R H I H
Sbjct: 105 LHT--SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162
Query: 531 --------------CEGEDSVTQTTTMATIGYMAPEYGSEGI-------VSAKCDVYSYG 569
GE+ + + TI YMAPE + + D+Y+ G
Sbjct: 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALG 222
Query: 570 VLLMETFTRK---RPTDEMFTGEMSLRRWVKESLP-HRLSEVVDTNLVREE--QAFSAKM 623
++ E F R P + + +M+ + V + +V R + +A+
Sbjct: 223 LIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENS 282
Query: 624 DCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+ S+ + DC + + R+ A ++ ++
Sbjct: 283 LAVRSLKETIEDCWDQDAEARLTAQXAEERMAEL 316
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 65/290 (22%), Positives = 113/290 (38%), Gaps = 26/290 (8%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS- 112
+ SD+GL +P LD+ N+ + L+ L + L NK+S
Sbjct: 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 113 ---GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-G 168
+F L KL+ L + N+ IP +L S L LR N I +P +
Sbjct: 93 IHEKAFSP----LRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRI-RKVPKGVFS 144
Query: 169 NLRKLVNLGLWSCNLQ-GQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227
LR + + + L+ L L +++ KL+G IP + T+ L L+
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELHLD 201
Query: 228 SNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIP-NSITNATKLIGLDLGFNSFSGHIPN 286
N++ + + L L +N I I S++ L L L N S +P
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLG-HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258
Query: 287 TFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
+L+ L V+ + NN+T + + + + ++L +NP+
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVND--FCPVGFGVKRAYYNGISLFNNPV 306
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 3e-22
Identities = 68/347 (19%), Positives = 113/347 (32%), Gaps = 62/347 (17%)
Query: 101 LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIG 160
LRV+ + L + P + +L L N+ + + L L L N I
Sbjct: 35 LRVVQCSDLGLK-AVPK--EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 161 GTIPSRI-GNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NI 218
I + LRKL L + +L +IP +L L + DN++ +P +F +
Sbjct: 92 -KIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KVPKGVFSGL 146
Query: 219 STMRILTLESNQL-SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGF 277
M + + N L + L + YL +S L IP + L L L
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDH 202
Query: 278 NSFSGHIP-NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
N I L L + N + + + L+ L L L +N L
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGS--------LSFLPTLRELHLDNNKL 253
Query: 337 GGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDL 396
+P + L+ LQ Y+ NN+ +D
Sbjct: 254 S-----------------------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284
Query: 397 CHLE------RLNILNLSGNKLS-GHIPPCL-ASLTSLRELHLGSNK 435
C + N ++L N + + P +T + G+ K
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 56/285 (19%), Positives = 97/285 (34%), Gaps = 44/285 (15%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
T L+L + + F L L +L + N K LR+L+ + ++ N L
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFN-IIGGTIPSRIGNL 170
P + S L LR+ N +P +F L + + N + +
Sbjct: 116 -EIPP--NLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 171 RKLVNLGLWSCNLQGQIPTEI----------------------GSLQNLKNLDLADNKLS 208
KL L + L IP ++ L L L N++
Sbjct: 172 LKLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 209 GLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI--- 264
I + T+R L L++N+LS R+P+ + L+ ++ + L N I K+ +
Sbjct: 231 M-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPD-LKLLQVVYLH-TNNITKVGVNDFCP 286
Query: 265 ----TNATKLIGLDLGFN--SFSGHIPNTFGNLRHLSVLNVMMNN 303
G+ L N + P TF + + N
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ-FGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 9e-19
Identities = 56/265 (21%), Positives = 99/265 (37%), Gaps = 35/265 (13%)
Query: 194 LQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252
LQ+L L L +NK+S I F + ++ L + N L +P + ++ L +
Sbjct: 77 LQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLV-EIPP---NLPSSLVELRIH 131
Query: 253 TNNLIGKIPNSI-TNATKLIGLDLGFN--SFSGHIPNTFGNLRHLSVLNVMMNNLTTESS 309
+N I K+P + + + +++G N SG P F L+ L+ L + LT
Sbjct: 132 -DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK 189
Query: 310 SADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP 369
L+ L L N + I + + +S L + LG N +
Sbjct: 190 DL-----------PETLNELHLDHNKIQAIELEDLLRYS-KLYRLG---LGHNQIRMIEN 234
Query: 370 TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-------CLAS 422
S+ L L+ ++ N L VP L L+ L ++ L N ++ +
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVK 292
Query: 423 LTSLRELHLGSNKLSSSIPSSLAFR 447
+ L +N + FR
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFR 317
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 61/383 (15%), Positives = 116/383 (30%), Gaps = 52/383 (13%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115
+ + T + L+ L SLD ++ + +L L + N ++ +
Sbjct: 23 EVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TL 79
Query: 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVN 175
+ + L L D N T + L++L L + N + + + L
Sbjct: 80 D--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKL-TKLD--VSQNPLLTY 131
Query: 176 LGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235
L L ++ L LD NK + + + + L N+++
Sbjct: 132 LNCARNTLT---EIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKIT--- 183
Query: 236 PSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS 295
+ + L N I K+ + +L LD N + I L L+
Sbjct: 184 -ELDVSQNKLLNRLNCD-TNNITKLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLT 236
Query: 296 VLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIY 355
+ +N LT S L+ L L I + + + Q IY
Sbjct: 237 YFDCSVNPLTELDVS-----------TLSKLTTLHCIQTDLLEI------DLTHNTQLIY 279
Query: 356 AFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGH 415
+ QL + DL +L L L+ +L+
Sbjct: 280 ---FQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-E 332
Query: 416 IPPCLASLTSLRELHLGSNKLSS 438
+ ++ T L+ L + +
Sbjct: 333 LD--VSHNTKLKSLSCVNAHIQD 353
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 9e-23
Identities = 62/397 (15%), Positives = 125/397 (31%), Gaps = 54/397 (13%)
Query: 48 SRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLA 107
+ +T+L+ + + L+ L L + NN L L Q L ++
Sbjct: 39 EQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNI-TTLD--LSQNTNLTYLACD 93
Query: 108 YNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI 167
NKL+ + + L+KL L D N T + L L N + I +
Sbjct: 94 SNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--V 144
Query: 168 GNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227
+ +L L ++ + L LD + NK++ L + + L +
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCD 199
Query: 228 SNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNT 287
+N ++ +L + +L S +N + +I +T T+L D N + +T
Sbjct: 200 TNNIT-KLDLN---QNIQLTFLDCS-SNKLTEID--VTPLTQLTYFDCSVNPLTELDVST 252
Query: 288 FGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF 347
L L + +L LT+ L ++
Sbjct: 253 LSKLTTLHCIQ---TDLLE-----------IDLTHNTQLIYFQAEGCR------KIKELD 292
Query: 348 SASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNL 407
+Y + + + + +L Y+ L D+ H +L L+
Sbjct: 293 VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSC 346
Query: 408 SGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444
+ + + +L + + +L
Sbjct: 347 VNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETL 381
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-19
Identities = 60/366 (16%), Positives = 120/366 (32%), Gaps = 52/366 (14%)
Query: 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132
N + V+ QL L + + ++ I L+ L L
Sbjct: 19 NFASEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTS 73
Query: 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG 192
NN T L + L L + N + + + L KL L + L ++
Sbjct: 74 NNITTL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVS 124
Query: 193 SLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252
L L+ A N L+ + + + + + L N+ +L T + L S
Sbjct: 125 QNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCS 178
Query: 253 TNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD 312
N + ++ L L+ N+ + + L+ L+ N LT
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE------ 226
Query: 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372
+T L+ + NPL +L + + L ++ + +++ +
Sbjct: 227 -----IDVTPLTQLTYFDCSVNPLT----ELDVSTLSKLTTLHCIQTDLLEID------L 271
Query: 373 GTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG 432
QL F + D+ H +L +L+ ++ + L+ L L+L
Sbjct: 272 THNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLN 326
Query: 433 SNKLSS 438
+ +L+
Sbjct: 327 NTELTE 332
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 54/339 (15%), Positives = 106/339 (31%), Gaps = 45/339 (13%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
T L+ L + L +LD S N L + Q + L ++ N ++
Sbjct: 151 TELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT- 204
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
+ +L L N T + L++L N + + + L KL
Sbjct: 205 KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKL 256
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
L +L ++ L + + + + + + +L ++ ++
Sbjct: 257 TTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGIT- 310
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRH 293
L + + YL L+ N + ++ +++ TKL L + G +
Sbjct: 311 ELDLS---QNPKLVYLYLN-NTELTELD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPA 362
Query: 294 LSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQN 353
L+ T +SLT + L NP+ I P G + +
Sbjct: 363 LNNNFEAEGQTITMPKETLT---NNSLTIAVSPDLLDQFGNPM-NIEPGDGGVYDQATNT 418
Query: 354 I-------------YAFELGFNDLNGTIPTSIGTLQQLQ 379
I Y F + GT+ T Q ++
Sbjct: 419 ITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPIK 457
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 35/244 (14%)
Query: 195 QNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTN 254
N + A ++ + ++T+ L ++ ++ + I L + L + +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEK-LTGLTKLICT-S 73
Query: 255 NLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314
N I + ++ T L L N + ++ L L+ LN N LT
Sbjct: 74 NNITTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTK-------- 120
Query: 315 SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGT 374
++ L+ L A N L I + S N EL + +
Sbjct: 121 ---LDVSQNPLLTYLNCARNTLTEI------DVS---HNTQLTELDCHLNKKITKLDVTP 168
Query: 375 LQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSN 434
QL N + D+ + LN LN N ++ + L L L SN
Sbjct: 169 QTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSN 222
Query: 435 KLSS 438
KL+
Sbjct: 223 KLTE 226
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 18/263 (6%)
Query: 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT-- 136
+ + +P + + L NKL L++L L L N +
Sbjct: 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 137 GPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI-GSLQ 195
G S F + L+ L FN + T+ S L +L +L NL+ + SL+
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 196 NLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTN 254
NL LD++ + IF +S++ +L + N I LRN+ +L LS
Sbjct: 127 NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-Q 184
Query: 255 NLIGKIP-NSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQ 313
+ ++ + + + L L++ N+F + L L VL+ +N++ T
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-- 242
Query: 314 WSFLSSLTNCRNLSNLALASNPL 336
L +L+ L L N
Sbjct: 243 ---LQHFP--SSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 8e-21
Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 21/264 (7%)
Query: 180 SCNLQG--QIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGR-L 235
CN +G +PT I + L+L NKL +P +F ++ + L+L SN LS +
Sbjct: 13 RCNSKGLTSVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 236 PSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP-NTFGNLRHL 294
S +++YL LS N +I + ++ +L LD ++ + F +LR+L
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 295 SVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNI 354
L++ + + +L L +A N + + L+N+
Sbjct: 129 IYLDISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSF---QENFLPDIFTELRNL 177
Query: 355 YAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSG 414
+L L PT+ +L LQ + NN L L +L+ S N +
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Query: 415 HIPPCLASL-TSLRELHLGSNKLS 437
L +SL L+L N +
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 9e-18
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 7/193 (3%)
Query: 68 PLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG-SFPSWIGVLSKLR 126
+ L LD+S N + L +L + ++ L S S L L
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 127 ILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQ 184
L + + + N +F LS LE+L+ N I LR L L L C L+
Sbjct: 130 YLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 185 GQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSL 243
Q+ SL +L+ L+++ N L ++++++L N + + H
Sbjct: 189 -QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
Query: 244 RNIEYLALSTNNL 256
++ +L L+ N+
Sbjct: 248 SSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 8e-14
Identities = 39/214 (18%), Positives = 77/214 (35%), Gaps = 22/214 (10%)
Query: 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
+P I ++ L+L N F L L+ L++ N L+ + + +S
Sbjct: 22 VPTGIPSSATR--LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 320 LTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI-GTLQQL 378
L L L+ N + + +G L+++ ++L S+ +L+ L
Sbjct: 80 LKY------LDLSFNGVITMSSNFLG--LEQLEHLD---FQHSNLKQMSEFSVFLSLRNL 128
Query: 379 QGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKLS 437
+ + + L L +L ++GN + P L +L L L +L
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL- 187
Query: 438 SSIPSSLAFRSFDSECEVLRNVR-HRNLIKIISS 470
+ + AF S S L+ + N + +
Sbjct: 188 EQLSPT-AFNSLSS----LQVLNMSHNNFFSLDT 216
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 71/397 (17%), Positives = 143/397 (36%), Gaps = 38/397 (9%)
Query: 57 NLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS---- 112
+ + FGN+S L L +S + + L +V+ +
Sbjct: 101 AFDALPICKE----FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156
Query: 113 -GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG------TIPS 165
+ L I+ F + S+ ++ LE+ + + +I +
Sbjct: 157 PEGLQDFN--TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214
Query: 166 RIGNLRKLVNLGLWSCNLQGQIPTEIGSLQ---NLKNLDLADNKLSGLIPPTIFNISTMR 222
++ KL NL L + I L + +++ KL G + F+ S
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274
Query: 223 ILTLESNQLSGR----LPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN 278
+ L +Q+ S I N+ + + + + + LD N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 279 SFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGG 338
+ + G+L L L + MN L S A+ + + SL L ++ N +
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ------QLDISQNSVSY 388
Query: 339 ILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCH 398
+ G+ S +++ + + N L TI + +++ + N ++ +P +
Sbjct: 389 DEKK--GDCS-WTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS-IPKQVVK 442
Query: 399 LERLNILNLSGNKLSGHIPPC-LASLTSLRELHLGSN 434
LE L LN++ N+L +P LTSL+++ L +N
Sbjct: 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 71/414 (17%), Positives = 136/414 (32%), Gaps = 39/414 (9%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
T LN+S + +LS L L IS N + L + L++NKL
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRIGNLR 171
L+ L L +N F F N+S+L+ L + + I +L
Sbjct: 83 -KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 172 KLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231
L + + + LQ+ L + I ++S + LE + +
Sbjct: 140 ISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 232 SGRLPSTIGHSLRN----------IEYLALSTNNLIGKIPNSITNATK--------LIGL 273
L + + L L+ I + +
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 274 DLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALAS 333
L + +L+ LS+ V+ + S + S++ N+ N ++
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI--YEIFSNM----NIKNFTVSG 311
Query: 334 NPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ--GY 391
+ + L + + ++ N L T+ + G L +L+ + N L+
Sbjct: 312 TRM---VHMLCPSKISPFLHLD---FSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365
Query: 392 VPHDLCHLERLNILNLSGNKLSGHIPPCL-ASLTSLRELHLGSNKLSSSIPSSL 444
+ ++ L L++S N +S + SL L++ SN L+ +I L
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 7e-20
Identities = 55/331 (16%), Positives = 107/331 (32%), Gaps = 14/331 (4%)
Query: 120 GVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLW 179
+ K IL + N + + + +LS+L +L N I S ++L L L
Sbjct: 18 DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77
Query: 180 SCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPST 238
L I NLK+LDL+ N L F N+S ++ L L + L
Sbjct: 78 HNKLVK-IS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134
Query: 239 IGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLN 298
I H + L L + P + + L + + ++ +V N
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQD---FNTESLHIVFPTNKEFHFILDVSVKTVAN 191
Query: 299 VMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFE 358
+ ++N+ FLS L + L+ + + + +
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251
Query: 359 LGFNDLN-------GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNK 411
+++ S +L+ L V + + +NI N + +
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 412 LSGHIPPCLASLTSLRELHLGSNKLSSSIPS 442
C + ++ L +N L+ ++
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 1e-18
Identities = 45/285 (15%), Positives = 92/285 (32%), Gaps = 18/285 (6%)
Query: 30 NNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHG 89
N S I + + + + + + L + + IS G
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF--IRILQLVWHTTVWYFSISNVKLQG 261
Query: 90 HLPKELG-----QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF 144
L L+ L + + + + S + I +
Sbjct: 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321
Query: 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG---SLQNLKNLD 201
+S L N++ T+ G+L +L L L L+ ++ +++L+ LD
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLD 380
Query: 202 LADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI 260
++ N +S ++ L + SN L+ + + I+ L L +N + I
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKI-KSI 436
Query: 261 PNSITNATKLIGLDLGFNSFSGHIPN-TFGNLRHLSVLNVMMNNL 304
P + L L++ N +P+ F L L + + N
Sbjct: 437 PKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 49/260 (18%)
Query: 446 FRSFDSECEV--LRNVRHRNLIKIISSCSNPDFK----ALVLEFMPNGSLEKWLYSHNYF 499
S+ E E+ +RH N++ I++ L+ ++ NGSL +L +
Sbjct: 73 EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYL--KSTT 130
Query: 500 LDILERLNIMIDVGSALEYL----RHGHSSAPIIH------------------------- 530
LD L + S L +L I H
Sbjct: 131 LDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 190
Query: 531 ----CEGEDSVTQTTTMATIGYMAPE--YGSEGIVSA----KCDVYSYGVLLMETFTRKR 580
E + T + T YM PE S D+YS+G++L E R
Sbjct: 191 KFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCV 250
Query: 581 PTDEMFTGEMSLRRWVKESLP-HRLSEVVDTNLVR-EEQAFSAKMDCLLSIMDLALDCCM 638
+ ++ V + E+V +R + +CL + L +C
Sbjct: 251 SGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWA 310
Query: 639 ESPDKRMHMTDAAAKLKKIK 658
+P R+ L K+
Sbjct: 311 HNPASRLTALRVKKTLAKMS 330
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 55/262 (20%)
Query: 446 FRSFDSECEV--LRNVRHRNLIKIISSCSNPDFKA----LVLEFMPNGSLEKWLYSHNYF 499
+S+ E E+ +RH N++ I+S + L+ + GSL +L
Sbjct: 44 EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYL--QLTT 101
Query: 500 LDILERLNIMIDVGSALEYL----RHGHSSAPIIH------------------------- 530
LD + L I++ + S L +L I H
Sbjct: 102 LDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAV 161
Query: 531 ----CEGEDSVTQTTTMATIGYMAPE------YGSEGIVSAKCDVYSYGVLLMETFTRKR 580
+ V + T YMAPE + D++++G++L E R
Sbjct: 162 MHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMV 221
Query: 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQ-----AFSAKMDCLLSIMDLALD 635
+ + + E + + ++Q L S+ L +
Sbjct: 222 SNGIVEDYKPP---FYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKE 278
Query: 636 CCMESPDKRMHMTDAAAKLKKI 657
C ++P R+ L KI
Sbjct: 279 CWYQNPSARLTALRIKKTLTKI 300
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 2e-22
Identities = 65/267 (24%), Positives = 95/267 (35%), Gaps = 48/267 (17%)
Query: 77 LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS----GSFPSWIGVLSKLRILRLDY 132
L++ EN LR L ++ L+ N + G+F L+ L L L
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG----LANLNTLELFD 121
Query: 133 NNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQIPTE 190
N T IPN F LS+L+ L N I +IPS + L L L I
Sbjct: 122 NRLTT-IPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 191 I-GSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249
L NL+ L+LA L + P + + + L L N LS + L +++ L
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL 236
Query: 250 ALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESS 309
+ + I I N F NL+ L +N+ NNLT
Sbjct: 237 WMI-QSQIQVIE-----------------------RNAFDNLQSLVEINLAHNNLTLLPH 272
Query: 310 SADQWSFLSSLTNCRNLSNLALASNPL 336
+ L +L + L NP
Sbjct: 273 DL-----FTPLH---HLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 1e-20
Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 26/261 (9%)
Query: 180 SCNLQG--QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237
C + ++P I + N + L+L +N++ + + ++ + IL L N + +
Sbjct: 49 ICVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEI 105
Query: 238 TIGHSLRNIEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIP-NTFGNLRHLS 295
+ L N+ L L +N + IPN +KL L L N IP F + L
Sbjct: 106 GAFNGLANLNTLELF-DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLR 163
Query: 296 VLNVM-MNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNI 354
L++ + L+ S A NL L LA L + I N + L +
Sbjct: 164 RLDLGELKRLSYISEGA--------FEGLSNLRYLNLAMCNL-----REIPNLT-PLIKL 209
Query: 355 YAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSG 414
+L N L+ P S L LQ ++ ++ +Q + +L+ L +NL+ N L+
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268
Query: 415 HIPP-CLASLTSLRELHLGSN 434
+P L L +HL N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 56/247 (22%), Positives = 85/247 (34%), Gaps = 49/247 (19%)
Query: 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255
+ L +P I + R+L L NQ+ + LR++E L LS N
Sbjct: 44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLS-RN 98
Query: 256 LIGKIP-NSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314
I I + L L+L N + F L L L + N + + S A
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--- 155
Query: 315 SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNI--YAFELGFNDLNGTIPTSI 372
+L L L L I AFE
Sbjct: 156 -----FNRIPSLRRLDLGELK--------------RLSYISEGAFE-------------- 182
Query: 373 GTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHL 431
L L+ + NL+ +P+ L L +L+ L+LSGN LS I P L L++L +
Sbjct: 183 -GLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWM 238
Query: 432 GSNKLSS 438
+++
Sbjct: 239 IQSQIQV 245
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 15/168 (8%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKEL-GQLRRLRVMSLA-YNKLS----GSFPSWIGVLSK 124
F LS L L + N +P ++ LR + L +LS G+F LS
Sbjct: 132 FVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG----LSN 186
Query: 125 LRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ 184
LR L L N IP +L L +L+ L N + P L L L + +Q
Sbjct: 187 LRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 185 GQIPTE-IGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231
I +LQ+L ++LA N L+ L + + + L N
Sbjct: 245 -VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTS 425
+P I T + + EN +Q + HL L IL LS N + I L +
Sbjct: 57 EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113
Query: 426 LRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVR-HRNLIKIISS 470
L L L N+L ++IP+ AF L+ + N I+ I S
Sbjct: 114 LNTLELFDNRL-TTIPNG-AFVYLSK----LKELWLRNNPIESIPS 153
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 6e-22
Identities = 53/262 (20%), Positives = 91/262 (34%), Gaps = 36/262 (13%)
Query: 193 SLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLAL 251
NL+ L L N ++ I F ++ ++ L L N LS L S+ L ++ +L L
Sbjct: 74 RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131
Query: 252 STNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIP-NTFGNLRHLSVLNVMMNNLTTESS 309
N S+ ++ TKL L +G I F L L L + ++L +
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191
Query: 310 SADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP 369
+ L + +N+S+L L +L ++ EL DL+
Sbjct: 192 KS--------LKSIQNVSHLILHMKQHILLLE---IFVD-VTSSVECLELRDTDLDT--- 236
Query: 370 TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLREL 429
+ L + L + ++ L + L ++ L EL
Sbjct: 237 -------------FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282
Query: 430 HLGSNKLSSSIPSSLAFRSFDS 451
N+L S+P F S
Sbjct: 283 EFSRNQL-KSVPDG-IFDRLTS 302
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 6e-22
Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 30/275 (10%)
Query: 77 LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS----GSFPSWIGVLSKLRILRLDY 132
+ SLD+S N +L + L+ + L N ++ SF S L L L L Y
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS----LGSLEHLDLSY 109
Query: 133 NNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQIPTE 190
N + + +S F LS L L N + + +L KL L + + + +I +
Sbjct: 110 NYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 191 I-GSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249
L L+ L++ + L P ++ +I + L L Q L ++E L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227
Query: 250 ALSTNNLIGKIPNSI--------TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMM 301
L +L + + + + S + + L L
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286
Query: 302 NNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
N L + LT +L + L +NP
Sbjct: 287 NQLKSVPDGI-----FDRLT---SLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 7e-12
Identities = 41/195 (21%), Positives = 64/195 (32%), Gaps = 36/195 (18%)
Query: 245 NIEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNN 303
++ L LS NN I I NS L L L N + ++F +L L L++ N
Sbjct: 53 AVKSLDLS-NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 304 LTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFND 363
L+ SSS +L+ L L NP + + + L + +G D
Sbjct: 112 LSNLSSSW--------FKPLSSLTFLNLLGNPYKTLGE---TSLFSHLTKLQILRVGNMD 160
Query: 364 LNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASL 423
I D L L L + + L + P L S+
Sbjct: 161 TFTKIQ-----------------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 424 TSLRELHLGSNKLSS 438
++ L L +
Sbjct: 198 QNVSHLILHMKQHIL 212
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 8e-12
Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 21/188 (11%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129
F +L+ L L + + + ++ L L + + + L P + + + L
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204
Query: 130 LDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP 188
L + S +E L + L L
Sbjct: 205 LHMKQHIL-LLEIFVDVTSSVECLELRDTDLDT---FHFSELSTGETNSLI--------- 251
Query: 189 TEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEY 248
+N+ + D L + + IS + L NQL +P I L +++
Sbjct: 252 ----KKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQK 305
Query: 249 LALSTNNL 256
+ L TN
Sbjct: 306 IWLHTNPW 313
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 9e-22
Identities = 63/267 (23%), Positives = 91/267 (34%), Gaps = 48/267 (17%)
Query: 77 LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS----GSFPSWIGVLSKLRILRLDY 132
L++ ENN L L V+ L N + G+F L+ L L L
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG----LASLNTLELFD 132
Query: 133 NNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQIPTE 190
N T IP+ F LS+L L N I +IPS + L+ L L I
Sbjct: 133 NWLTV-IPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190
Query: 191 I-GSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249
L NLK L+L + + P + + + L + N + H L +++ L
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKL 247
Query: 250 ALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESS 309
+ N+ + I N F L L LN+ NNL++
Sbjct: 248 WVM-NSQVSLIE-----------------------RNAFDGLASLVELNLAHNNLSSLPH 283
Query: 310 SADQWSFLSSLTNCRNLSNLALASNPL 336
T R L L L NP
Sbjct: 284 DL--------FTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 1e-21
Identities = 61/314 (19%), Positives = 99/314 (31%), Gaps = 69/314 (21%)
Query: 123 SKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN 182
++ + + +P + S L N I +L L L L +
Sbjct: 54 NQFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 183 LQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGH 241
++ QI L +L L+L DN L+ + +S +R L L +N + +PS +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168
Query: 242 SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMM 301
+ ++ L L + I F L +L LN+ M
Sbjct: 169 RVPSLMRLDLGELKKLEYIS-----------------------EGAFEGLFNLKYLNLGM 205
Query: 302 NNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGF 361
N+ + +LT L L ++ N I P
Sbjct: 206 CNIKD----------MPNLTPLVGLEELEMSGNHFPEIRPGSFHG--------------- 240
Query: 362 NDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CL 420
L L+ +V + + + L L LNL+ N LS +P
Sbjct: 241 -------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF 286
Query: 421 ASLTSLRELHLGSN 434
L L ELHL N
Sbjct: 287 TPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 8e-15
Identities = 53/245 (21%), Positives = 86/245 (35%), Gaps = 45/245 (18%)
Query: 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255
+ LS +P I S R L L N + + + L ++E L L N
Sbjct: 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLG-RN 109
Query: 256 LIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWS 315
I +I F L L+ L + N LT S A
Sbjct: 110 SIRQIE-----------------------VGAFNGLASLNTLELFDNWLTVIPSGA---- 142
Query: 316 FLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELG-FNDLNGTIPTSIGT 374
L L L +NP+ I F+ + ++ +LG L +
Sbjct: 143 ----FEYLSKLRELWLRNNPIESIPS---YAFN-RVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 375 LQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGS 433
L L+ + N++ +P+ L L L L +SGN I P L+SL++L + +
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251
Query: 434 NKLSS 438
+++S
Sbjct: 252 SQVSL 256
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 5/137 (3%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129
F + L+ LD+ E ++ + L L+ ++L + P+ L L L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP-LVGLEELE 224
Query: 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPT 189
+ N+F P S LS L+ L + + + L LV L L NL +P
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH 283
Query: 190 EI-GSLQNLKNLDLADN 205
++ L+ L L L N
Sbjct: 284 DLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 13/167 (7%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLA-YNKLS----GSFPSWIGVLSK 124
F LS L L + N +P ++ L + L KL G+F L
Sbjct: 143 FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG----LFN 197
Query: 125 LRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ 184
L+ L L N +P +L L LE L N P L L L + + +
Sbjct: 198 LKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Query: 185 GQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231
L +L L+LA N LS L + + L L N
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 58/260 (22%), Positives = 87/260 (33%), Gaps = 46/260 (17%)
Query: 180 SCNLQG--QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237
SC QG +P I + + L N++S + + + IL L SN L+ R+ +
Sbjct: 17 SCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDA 73
Query: 238 TIGHSLRNIEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIP-NTFGNLRHLS 295
L +E L LS N + + + +L L L + F L L
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132
Query: 296 VLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIY 355
L + N L + NL++L L N + + F
Sbjct: 133 YLYLQDNALQALPDDT--------FRDLGNLTHLFLHGNRISSVPE---RAFRG------ 175
Query: 356 AFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGH 415
L L + +N + PH L RL L L N LS
Sbjct: 176 -------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-A 215
Query: 416 IPP-CLASLTSLRELHLGSN 434
+P LA L +L+ L L N
Sbjct: 216 LPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 8e-19
Identities = 51/237 (21%), Positives = 78/237 (32%), Gaps = 34/237 (14%)
Query: 101 LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIG 160
+ + L N++S + L IL L N + L+ LE L N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 161 GTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NIS 219
++ + L L L L L + P +F ++
Sbjct: 94 RSVDP-----------ATFH------------GLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129
Query: 220 TMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNS 279
++ L L+ N L LP L N+ +L L N + + L L L N
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 280 FSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
+ P+ F +L L L + NNL+ + A L R L L L NP
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--------LAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 6/207 (2%)
Query: 77 LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT 136
+ + N R L ++ L N L+ + L+ L L L N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 137 GPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQIPTEI-GS 193
+ + F L RL L + + + + L L L L LQ +P +
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151
Query: 194 LQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALST 253
L NL +L L N++S + + ++ L L N+++ + L + L L
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFA 210
Query: 254 NNLIGKIPNSITNATKLIGLDLGFNSF 280
NNL ++ L L L N +
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 42/166 (25%), Positives = 60/166 (36%), Gaps = 9/166 (5%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129
F L+ L LD+S+N + L RL + L L P L+ L+ L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 130 LDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQI 187
L N +P+ F +L L L N I ++P R L L L L + +
Sbjct: 136 LQDNALQA-LPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVA-HV 192
Query: 188 PTEI-GSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQL 231
L L L L N LS +P + ++ L L N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 6e-20
Identities = 39/259 (15%), Positives = 79/259 (30%), Gaps = 49/259 (18%)
Query: 447 RSFDSECEV--LRNVRHRNLIKIISSCSNPDFKA----LVLEFMPNGSLEKWLYSHNYFL 500
RS+ E E+ +RH N++ I++ + + LV ++ +GSL +L + Y +
Sbjct: 79 RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYL--NRYTV 136
Query: 501 DILERLNIMIDVGSALEYL----RHGHSSAPIIH-------------------------- 530
+ + + + S L +L I H
Sbjct: 137 TVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 196
Query: 531 ---CEGEDSVTQTTTMATIGYMAPE------YGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
+ + T YMAPE + D+Y+ G++ E R
Sbjct: 197 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSI 256
Query: 582 TDEMFTGEMSLRRWVKESLP-HRLSEVVDTNLVR-EEQAFSAKMDCLLSIMDLALDCCME 639
++ V + +VV +R + L + + +C
Sbjct: 257 GGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYA 316
Query: 640 SPDKRMHMTDAAAKLKKIK 658
+ R+ L ++
Sbjct: 317 NGAARLTALRIKKTLSQLS 335
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 8e-19
Identities = 47/240 (19%), Positives = 87/240 (36%), Gaps = 55/240 (22%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
F E +L+ H N++++I C+ +V+E + G +L + L + L +
Sbjct: 159 FLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQM 218
Query: 509 MIDVGSALEYLRHGHSSAPIIH-------C--------------------EGEDSVTQTT 541
+ D + +EYL S IH C +G + +
Sbjct: 219 VGDAAAGMEYL----ESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGL 274
Query: 542 TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESL 600
+ + APE + G S++ DV+S+G+LL ETF+ P + + +E +
Sbjct: 275 RQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ------TREFV 328
Query: 601 PH--RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658
RL C ++ L C P +R + +L+ I+
Sbjct: 329 EKGGRL---------------PCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 9e-19
Identities = 73/436 (16%), Positives = 145/436 (33%), Gaps = 56/436 (12%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHG-HLPKELGQLRRLRVMSLAYNKL- 111
L++S L I ++ L LD+S N+F + KE G L +L + L+ K
Sbjct: 103 EYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Query: 112 SGSFPS--------------------------WIGVLSKLRILRLDYNNFTGPIPNSLFN 145
I + L ++ + F+ + S+
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219
Query: 146 LSRLEMLRAEFNIIGG----TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQN---LK 198
L L++ + N T S + L+N+ L + ++ ++
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279
Query: 199 NLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGR----LPSTIGHSLRNIEYLALSTN 254
L++ + ++ I F S + +L + + + + LS +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339
Query: 255 NLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314
+ + + L+ N F+ + L+ L L + N L A
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 315 SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGT 374
N+S+L L + A ++I L N L G++ +
Sbjct: 400 K---------NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-- 448
Query: 375 LQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGS 433
+++ + N + +P D+ HL+ L LN++ N+L +P LTSL+ + L
Sbjct: 449 PPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD 506
Query: 434 NKLSSSIPSSLAFRSF 449
N + P +
Sbjct: 507 NPWDCTCPGIRYLSEW 522
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 1e-17
Identities = 64/388 (16%), Positives = 126/388 (32%), Gaps = 39/388 (10%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFP--SWIGVLSKLRIL 128
F L LD+S N ++ + LR + L++N P G L+KL L
Sbjct: 96 FLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFL 151
Query: 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP 188
L F + +L +L + + + L L
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211
Query: 189 TEIGSLQNLKNLDLADNKLSGL-------IPPTIFNISTMRILTLESNQLSGRLPSTIGH 241
S+ L +L L++ KL+ + T+ +TL+ + + + +
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271
Query: 242 SL--RNIEYLALSTNNLIGKIPNSITNATK-----LIGLDLGFNSFSGHIPNTFGNLRHL 294
R +EYL + + +I ++ L+ + F + +
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331
Query: 295 SVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNI 354
++ + +++ + + L N + S +L+ +
Sbjct: 332 NIKMLSISDTPFIHMVCPPS--------PSSFTFLNFTQNVFTDSVF---QGCS-TLKRL 379
Query: 355 YAFELGFNDLNGTIPTSIG---TLQQLQGFYVPENNLQGYVPHDLCHL-ERLNILNLSGN 410
L N L + L+ V N+L + C E + +LNLS N
Sbjct: 380 QTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 411 KLSGHIPPCLASLTSLRELHLGSNKLSS 438
L+G + CL ++ L L +N++ S
Sbjct: 439 MLTGSVFRCLPP--KVKVLDLHNNRIMS 464
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 3e-16
Identities = 61/329 (18%), Positives = 105/329 (31%), Gaps = 14/329 (4%)
Query: 120 GVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGL 178
+ + + L L N+ + + LS L +LR N I ++ + + L L +
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107
Query: 179 WSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPS 237
LQ I + +L++LDL+ N L F N++ + L L + + +L
Sbjct: 108 SHNRLQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDL 163
Query: 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVL 297
L L + I L L F+ S ++ L L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 298 NVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAF 357
+ L E+ +FLS LT L N+ L + F + +
Sbjct: 224 QLSNIKLNDENCQ-RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYL 281
Query: 358 ELGFNDLNGTIPTSIGT-----LQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKL 412
+ + I T L+ L +V +NI LS +
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341
Query: 413 SGHIPPCLASLTSLRELHLGSNKLSSSIP 441
C S +S L+ N + S+
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 4e-16
Identities = 47/285 (16%), Positives = 99/285 (34%), Gaps = 18/285 (6%)
Query: 30 NNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHG 89
N+ + + + ++ G VT ++ F + L+I
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290
Query: 90 HLPKELGQ-----LRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF 144
+ +E L+ L + + S + V +++ I L ++
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350
Query: 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLAD 204
+ S L N+ ++ L++L L L L+ +N+ +L+ D
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLD 409
Query: 205 NKLSGLIPPTIFNI-----STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGK 259
L+ L ++ ++ +L L SN L+G + + + + L L N +
Sbjct: 410 VSLNSL-NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV---KVLDLHNNRI-MS 464
Query: 260 IPNSITNATKLIGLDLGFNSFSGHIPN-TFGNLRHLSVLNVMMNN 303
IP +T+ L L++ N +P+ F L L + + N
Sbjct: 465 IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 6e-16
Identities = 66/352 (18%), Positives = 125/352 (35%), Gaps = 28/352 (7%)
Query: 101 LRVMSLAYNKLS----GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAE 155
+ +SL+ N +S LS+LR+LRL +N + +F LE L
Sbjct: 54 TKALSLSQNSISELRMPDISF----LSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVS 108
Query: 156 FNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPT--EIGSLQNLKNLDLADNKLSGLIPP 213
N + I + L +L L S N +P E G+L L L L+ K L
Sbjct: 109 HNRLQ-NISC--CPMASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164
Query: 214 TIFNISTMRI-LTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATK--- 269
+ ++ I L L S + G ++ + +L N+L N NA
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224
Query: 270 LIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNL 329
L + L + + R ++LNV + ++ T + L R + L
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET---TWKCSVKLFQFFWPRPVEYL 281
Query: 330 ALASNPLGGILPQLIGNFS-ASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNL 388
+ + + + + +S +L+++ + + ++ + ++
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341
Query: 389 QGYVPHDLC--HLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438
H +C LN + N + + ++L L+ L L N L +
Sbjct: 342 P--FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 2e-17
Identities = 49/321 (15%), Positives = 92/321 (28%), Gaps = 64/321 (19%)
Query: 125 LRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ 184
L+ + + + +L RL + A R+ + L L L + +
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 185 GQIPTEIGSLQ--NLKNLDLADNKLSGL--IPPTIFNIST--MRILTLESNQLSGRLPST 238
G P + +L L+L + + + +++L++
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCE 167
Query: 239 IGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLN 298
+ L LS N +G+ P F L+ L++ N
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISAL-----------------CPLKFPTLQVLALRN 210
Query: 299 VMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFE 358
M + S+ L L L+ N L ++ + L ++
Sbjct: 211 AGMETPSGVCSA--------LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN--- 259
Query: 359 LGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP 418
L F L +P + +L++L+LS N+L P
Sbjct: 260 LSFTGLK-QVPKGLPA--------------------------KLSVLDLSYNRLD-RNPS 291
Query: 419 CLASLTSLRELHLGSNKLSSS 439
L + L L N S
Sbjct: 292 PD-ELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 1e-16
Identities = 45/252 (17%), Positives = 77/252 (30%), Gaps = 23/252 (9%)
Query: 48 SRHQRVTALNLSDMGLGGTIP---LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVM 104
+ + L + + I L +S L L + G P L + +
Sbjct: 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124
Query: 105 SLAYNKLSGS-FPSWIGVLS-----KLRILRLDYNNFTGPIPNSLFNLSRLEML------ 152
L +S + +W+ L L++L + + + L L
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184
Query: 153 -RAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211
E +I P + L+ L G + L+ LDL+ N L
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244
Query: 212 PPTIFNI-STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKL 270
+ S + L L L ++P + L L LS N + + P S ++
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKL---SVLDLS-YNRLDRNP-SPDELPQV 298
Query: 271 IGLDLGFNSFSG 282
L L N F
Sbjct: 299 GNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 1e-14
Identities = 45/256 (17%), Positives = 69/256 (26%), Gaps = 31/256 (12%)
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPN-----SLFNLSRLEMLRAEFNIIGGTIPS 165
+ ++ L + RL P + +S L+ L E + GT P
Sbjct: 54 TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113
Query: 166 RIGNL--RKLVNLGLWSCNLQGQIPTEIGSLQN-----LKNLDLADNKLSGLIPPTIFNI 218
+ L L L + + + LQ LK L +A +
Sbjct: 114 PLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172
Query: 219 STMRILTLESNQLSGRLP---STIGHSLRNIEYLALSTNN---LIGKIPNSITNATKLIG 272
+ L L N G + ++ LAL G +L G
Sbjct: 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232
Query: 273 LDLGFNSFSGHIPN-TFGNLRHLSVLNVMMNNLTTESSSADQW-----------SFLSSL 320
LDL NS + L+ LN+ L S
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSP 292
Query: 321 TNCRNLSNLALASNPL 336
+ NL+L NP
Sbjct: 293 DELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 41/267 (15%), Positives = 73/267 (27%), Gaps = 34/267 (12%)
Query: 180 SCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTI 239
SCN P + L D+ + ++ + L
Sbjct: 14 SCNFSDPKPDWSSAFNCLGAADVE-------LYGGGRSLEYLLKRVDTEADLGQFTDIIK 66
Query: 240 GHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNV 299
SL+ + A + I + + L L L +G P + +
Sbjct: 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126
Query: 300 MMNNLTTESSSADQWSFLSSLTNC--RNLSNLALASNPLGGILPQLIGNFSASLQNIYAF 357
+ N+ S A + ++L+ L L L++A + + F +L +
Sbjct: 127 NLRNV----SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP-ALSTLD-- 179
Query: 358 ELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIP 417
L N G P L+ L + N SG
Sbjct: 180 -LSDNPELGERGLISAL-----------------CPLKFPTLQVLALRNAGMETPSGVCS 221
Query: 418 PCLASLTSLRELHLGSNKLSSSIPSSL 444
A+ L+ L L N L + +
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPS 248
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 56 LNLSDMGLGGTIP-LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGS 114
L+LS L S L SL++S +PK L +L V+ L+YN+L
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLD-R 288
Query: 115 FPSWIGVLSKLRILRLDYNNFTGP 138
PS L ++ L L N F
Sbjct: 289 NPS-PDELPQVGNLSLKGNPFLDS 311
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 40/241 (16%), Positives = 85/241 (35%), Gaps = 38/241 (15%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA--LVLEFMPNGSLEKWLYSHNYFLDILE 504
E E+LRN+ H N++K C+ L++EF+P+GSL+++L + +++ +
Sbjct: 68 ADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQ 127
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV------------------- 537
+L + + ++YL S +H + +
Sbjct: 128 QLKYAVQICKGMDYL----GSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYY 183
Query: 538 -TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWV 596
+ + + + APE + DV+S+GV L E T + +
Sbjct: 184 TVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPT 243
Query: 597 KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656
+ +V+ ++E + +C + L C P R + +
Sbjct: 244 HGQMTVT--RLVN--TLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEA 299
Query: 657 I 657
+
Sbjct: 300 L 300
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 39/242 (16%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA--LVLEFMPNGSLEKWLYSHNYFLDILE 504
R F+ E E+L++++H N++K C + + L++E++P GSL +L H +D ++
Sbjct: 56 RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIK 115
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIH---------------------------CEGEDS- 536
L + +EYL + IH + ++
Sbjct: 116 LLQYTSQICKGMEYL----GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFF 171
Query: 537 VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRW 595
+ + I + APE +E S DV+S+GV+L E FT ++ +
Sbjct: 172 KVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGND 231
Query: 596 VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655
+ + +++ L++ C I + +C + ++R D A ++
Sbjct: 232 KQGQMIVF--HLIE--LLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVD 287
Query: 656 KI 657
+I
Sbjct: 288 QI 289
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 6e-17
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 39/242 (16%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA--LVLEFMPNGSLEKWLYSHNYFLDILE 504
R F+ E E+L++++H N++K C + + L++E++P GSL +L H +D ++
Sbjct: 87 RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIK 146
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIH---------------------------CEGEDS- 536
L + +EYL + IH + ++
Sbjct: 147 LLQYTSQICKGMEYL----GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYY 202
Query: 537 VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRW 595
+ + I + APE +E S DV+S+GV+L E FT ++ +
Sbjct: 203 KVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGND 262
Query: 596 VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655
+ + +++ L++ C I + +C + ++R D A ++
Sbjct: 263 KQGQMIVF--HLIE--LLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVD 318
Query: 656 KI 657
+I
Sbjct: 319 QI 320
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 6e-17
Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 31/246 (12%)
Query: 193 SLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252
+L N + + ++ + ++ + L+ ++ + + L N+ L L
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQY-LNNLIGLELK 71
Query: 253 TNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD 312
+N I + + N TK+ L+L N ++ L+ + L++ +T
Sbjct: 72 -DNQITDLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD------ 121
Query: 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372
++ L NL L L N + I P A L N+ +G ++ P +
Sbjct: 122 ----VTPLAGLSNLQVLYLDLNQITNISPL------AGLTNLQYLSIGNAQVSDLTP--L 169
Query: 373 GTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG 432
L +L +N + P L L L ++L N++S P LA+ ++L + L
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
Query: 433 SNKLSS 438
+ +++
Sbjct: 226 NQTITN 231
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 49/260 (18%), Positives = 94/260 (36%), Gaps = 19/260 (7%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
+ + T+ +L + +L + + L L + L N+++
Sbjct: 21 AIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT 76
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK 172
P + L+K+ L L N + L ++ L I P + L
Sbjct: 77 DLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSN 130
Query: 173 LVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232
L L L + P + L NL+ L + + ++S L P + N+S + L + N++S
Sbjct: 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186
Query: 233 GRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292
P SL N+ + L NN I + + N + L + L + + NL
Sbjct: 187 DISPLA---SLPNLIEVHLK-NNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLV 241
Query: 293 HLSVLNVMMNNLTTESSSAD 312
+V+ ++ +D
Sbjct: 242 VPNVVKGPSGAPIAPATISD 261
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 8e-15
Identities = 46/270 (17%), Positives = 96/270 (35%), Gaps = 31/270 (11%)
Query: 169 NLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLES 228
L + + N+ + L + L ++ + + ++ + L L+
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72
Query: 229 NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTF 288
NQ++ P +L I L LS N + + I + LDL + +
Sbjct: 73 NQITDLAPLK---NLTKITELELS-GNPLKNVSA-IAGLQSIKTLDLTSTQITD-VTP-L 125
Query: 289 GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFS 348
L +L VL + +N +T +S L NL L++ + + + P + N S
Sbjct: 126 AGLSNLQVLYLDLNQITN----------ISPLAGLTNLQYLSIGNAQVSDLTP--LANLS 173
Query: 349 ASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLS 408
L + A + +D++ + +L L ++ N + P L + L I+ L+
Sbjct: 174 -KLTTLKADDNKISDISP-----LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
Query: 409 GNKLSGHIPPCLASLTSLRELHLGSNKLSS 438
++ +L + S +
Sbjct: 226 NQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 27/242 (11%)
Query: 95 LGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154
L ++ + ++ L + L T I + L+ L L
Sbjct: 15 DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT-IEG-VQYLNNLIGLEL 70
Query: 155 EFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPT 214
+ N I T + + NL K+ L L L+ + I LQ++K LDL +++ + P
Sbjct: 71 KDNQI--TDLAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP-- 124
Query: 215 IFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLD 274
+ +S +++L L+ NQ++ S + L N++YL++ N + + + N +KL L
Sbjct: 125 LAGLSNLQVLYLDLNQITN--ISPLAG-LTNLQYLSIG-NAQVSDLTP-LANLSKLTTLK 179
Query: 275 LGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASN 334
N S I +L +L +++ N ++ +S L N NL + L +
Sbjct: 180 ADDNKIS-DISP-LASLPNLIEVHLKNNQISD----------VSPLANTSNLFIVTLTNQ 227
Query: 335 PL 336
+
Sbjct: 228 TI 229
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 251 LSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSS 310
++ I I I + G ++ + T +L ++ L+ +TT
Sbjct: 3 ITQPTAINVIFP-DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT---- 55
Query: 311 ADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370
+ + NL L L N + + P +L I EL N L +
Sbjct: 56 ------IEGVQYLNNLIGLELKDNQITDLAPL------KNLTKITELELSGNPL--KNVS 101
Query: 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELH 430
+I LQ ++ + + P L L L +L L N+++ +I P LA LT+L+ L
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLS 157
Query: 431 LGSNKLSS 438
+G+ ++S
Sbjct: 158 IGNAQVSD 165
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ 376
+ N +A + + + + + + AF G + G + L
Sbjct: 12 IFPDPALANAIKIAAGKSNVTDTVT--QADLD-GITTLSAFGTGVTTIEG-----VQYLN 63
Query: 377 QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436
L G + +N + P L +L ++ L LSGN L ++ +A L S++ L L S ++
Sbjct: 64 NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQI 119
Query: 437 SSSIP 441
+ P
Sbjct: 120 TDVTP 124
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 9e-17
Identities = 52/240 (21%), Positives = 90/240 (37%), Gaps = 54/240 (22%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHN-YFLDIL 503
++F +E V+ +RH NL++++ +V E+M GSL +L S L
Sbjct: 231 QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL-YIVTEYMAKGSLVDYLRSRGRSVLGGD 289
Query: 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV--------------TQTT 541
L +DV A+EYL +H + ED+V TQ T
Sbjct: 290 CLLKFSLDVCEAMEYL----EGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT 345
Query: 542 TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESL 600
+ + APE E S K DV+S+G+LL E ++ + P + + V +
Sbjct: 346 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD------VVPRV 399
Query: 601 P--HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658
+++ A C ++ D+ +C R +L+ I+
Sbjct: 400 EKGYKM---------------DAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIR 444
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 50/236 (21%), Positives = 81/236 (34%), Gaps = 50/236 (21%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
F E EV+ + H L+++ C LV EFM +G L +L + L +
Sbjct: 50 FIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGM 109
Query: 509 MIDVGSALEYLRHGHSSAPIIH--------------------------CEGEDSVTQTTT 542
+DV + YL A +IH + + T T
Sbjct: 110 CLDVCEGMAYL----EEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT 165
Query: 543 MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESLP 601
+ + +PE S S+K DV+S+GVL+ E F+ K P +
Sbjct: 166 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR---------------- 209
Query: 602 HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
SEVV+ + + + C E P+ R + +L +I
Sbjct: 210 -SNSEVVE--DISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-16
Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 52/231 (22%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLD 501
S A + E V+ +V + ++ +++ C + L+ + MP G L ++ H +
Sbjct: 57 SPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIG 115
Query: 502 ILERLNIMIDVGSALEYLRHGHSSAPIIH--------------------------CEGED 535
LN + + + YL ++H E+
Sbjct: 116 SQYLLNWCVQIAKGMNYL----EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 171
Query: 536 SVTQTT-TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLR 593
I +MA E I + + DV+SYGV + E T +P D +
Sbjct: 172 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI-------- 223
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
SE+ ++ + + C + + + C M D R
Sbjct: 224 ---------PASEISS--ILEKGERLPQPPICTIDVYMIMRKCWMIDADSR 263
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 41/247 (16%), Positives = 88/247 (35%), Gaps = 54/247 (21%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKAL-VLEFMPNGSLEKWLYSHNYFL 500
F +E ++++ H N++ ++ C + L VL +M +G L ++ + +
Sbjct: 66 DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNP 125
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV--------------- 537
+ + + + V ++YL +S +H + E
Sbjct: 126 TVKDLIGFGLQVAKGMKYL----ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 181
Query: 538 ------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEM 590
+T + +MA E + K DV+S+GVLL E TR P ++ T +
Sbjct: 182 EYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD- 240
Query: 591 SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
+ ++ + RL C + ++ L C + R ++
Sbjct: 241 -ITVYLLQG--RRL---------------LQPEYCPDPLYEVMLKCWHPKAEMRPSFSEL 282
Query: 651 AAKLKKI 657
+++ I
Sbjct: 283 VSRISAI 289
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 3e-16
Identities = 48/240 (20%), Positives = 89/240 (37%), Gaps = 58/240 (24%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERL 506
F E +V++ +RH L+++ + S P + +V E+M GSL +L +L + + +
Sbjct: 226 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY--IVTEYMSKGSLLDFLKGETGKYLRLPQLV 283
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGEDSVTQT 540
++ + S + Y+ +H E + +
Sbjct: 284 DMAAQIASGMAYV----ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 339
Query: 541 TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKES 599
I + APE G + K DV+S+G+LL E T+ + P M E V +
Sbjct: 340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE------VLDQ 393
Query: 600 LP--HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+ +R+ +C S+ DL C + P++R A L+
Sbjct: 394 VERGYRM---------------PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 438
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 4e-16
Identities = 43/249 (17%), Positives = 92/249 (36%), Gaps = 54/249 (21%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKAL-VLEFMPNGSLEKWLYSHNYFLDILER 505
F +E ++++ H N++ ++ C + L VL +M +G L ++ + + + +
Sbjct: 135 SQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL 194
Query: 506 LNIMIDVGSALEYLRHGHSSAPIIH-------C--------------------EGEDSVT 538
+ + V +++L +S +H C + E
Sbjct: 195 IGFGLQVAKGMKFL----ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV 250
Query: 539 QTTTMAT--IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRW 595
T A + +MA E + K DV+S+GVLL E TR P ++ T + + +
Sbjct: 251 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVY 308
Query: 596 VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655
+ + RL C + ++ L C + R ++ +++
Sbjct: 309 LLQG--RRL---------------LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 351
Query: 656 KIKVKFLDD 664
I F+ +
Sbjct: 352 AIFSTFIGE 360
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-16
Identities = 34/199 (17%), Positives = 64/199 (32%), Gaps = 16/199 (8%)
Query: 141 NSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNL 200
N S + T + L + L + N+ T I N+K+L
Sbjct: 14 NVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDL 71
Query: 201 DLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI 260
+ + + P I +S + L + ++ + L ++ L +S + I
Sbjct: 72 TINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSI 128
Query: 261 PNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSL 320
I K+ +DL +N I L L LN+ + + +
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD----------YRGI 177
Query: 321 TNCRNLSNLALASNPLGGI 339
+ L+ L S +GG
Sbjct: 178 EDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 20/190 (10%)
Query: 169 NLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLES 228
+ +N L + +L + LA+ ++ L I ++ LT+ +
Sbjct: 21 TFKAYLNGLL---GQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75
Query: 229 NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTF 288
+ + I L N+E L + ++ +++ T L LD+ ++ I
Sbjct: 76 IHATN--YNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 289 GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFS 348
L ++ +++ N T+ + L L +L + + + I +F
Sbjct: 133 NTLPKVNSIDLSYNGAITD---------IMPLKTLPELKSLNIQFDGVHDYRG--IEDFP 181
Query: 349 ASLQNIYAFE 358
L +YAF
Sbjct: 182 -KLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 3e-13
Identities = 24/197 (12%), Positives = 61/197 (30%), Gaps = 22/197 (11%)
Query: 242 SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMM 301
+ + L + I + L + L + + + ++ L +
Sbjct: 21 TFKAYLNGLLG-QSSTANI--TEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINN 75
Query: 302 NNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGF 361
+ T + ++ NL L + + + L ++ ++
Sbjct: 76 IHATN----------YNPISGLSNLERLRIMGKDVTSDKIPNLSG----LTSLTLLDISH 121
Query: 362 NDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLA 421
+ + +I T I TL ++ + N + L L L LN+ + + + +
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IE 178
Query: 422 SLTSLRELHLGSNKLSS 438
L +L+ S +
Sbjct: 179 DFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-13
Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 12/188 (6%)
Query: 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132
++ + +++ ++ L + + ++ L+G I ++ L ++
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINN 75
Query: 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG 192
+ T P + LS LE LR + + L L L + I T+I
Sbjct: 76 IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 193 SLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252
+L + ++DL+ N I P + + ++ L ++ + + I + L
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIED-FPKLNQLYAF 189
Query: 253 TNNLIGKI 260
+ IG
Sbjct: 190 -SQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 8e-13
Identities = 32/192 (16%), Positives = 68/192 (35%), Gaps = 22/192 (11%)
Query: 247 EYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306
E L + IP+S + LG +S + T + L+ + + N+T
Sbjct: 4 EQTGLKASQDNVNIPDS--TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD 58
Query: 307 ESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNG 366
L+ + N+ +L + + P + L N+ + D+
Sbjct: 59 ----------LTGIEYAHNIKDLTINNIHATNYNP------ISGLSNLERLRIMGKDVTS 102
Query: 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSL 426
++ L L + + + + L ++N ++LS N I P L +L L
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPEL 161
Query: 427 RELHLGSNKLSS 438
+ L++ + +
Sbjct: 162 KSLNIQFDGVHD 173
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 29/157 (18%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
L ++++ P+ LS L L I + L L L ++ ++++
Sbjct: 69 KDLTINNIHATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
S + I L K+ + L YN I L L L+ L +F+ + + R +
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFD--------GVHDYRGI 177
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210
+ L L + G
Sbjct: 178 ED------------------FPKLNQLYAFSQTIGGK 196
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 42/230 (18%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA--LVLEFMPNGSLEKWLYSHNYFLDILE 504
R F E ++L+ + ++K P ++ LV+E++P+G L +L H LD
Sbjct: 69 RDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASR 128
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGEDSVT 538
L + +EYL S +H +
Sbjct: 129 LLLYSSQICKGMEYL----GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYY 184
Query: 539 QTTTMAT--IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRW 595
I + APE S+ I S + DV+S+GV+L E FT + + R
Sbjct: 185 VVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKS----CSPSAEFLRM 240
Query: 596 VKESLP-HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ LS +++ L+ E Q A C + +L C SP R
Sbjct: 241 MGCERDVPALSRLLE--LLEEGQRLPAPPACPAEVHELMKLCWAPSPQDR 288
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 5e-16
Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 52/245 (21%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLD 501
+ R F E ++ H N+I++ + +V E+M NGSL+ +L H+
Sbjct: 86 TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145
Query: 502 ILERLNIMIDVGSALEYLRHGHSSAPIIH---------------C-------------EG 533
+++ + ++ + S ++YL S +H C +
Sbjct: 146 VIQLVGMLRGIASGMKYL----SDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP 201
Query: 534 EDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSL 592
E + T I + +PE + ++ DV+SYG++L E + +RP EM
Sbjct: 202 EAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM------- 254
Query: 593 RRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652
+V+ V E MDC ++ L LDC + + R +
Sbjct: 255 ----------SNQDVIK--AVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVS 302
Query: 653 KLKKI 657
L K+
Sbjct: 303 ILDKL 307
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 8e-16
Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 52/245 (21%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLD 501
+ F E ++ H N+I++ S ++ E+M NG+L+K+L +
Sbjct: 86 TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFS 145
Query: 502 ILERLNIMIDVGSALEYLRHGHSSAPIIH-------------------------CEGEDS 536
+L+ + ++ + + ++YL ++ +H +D
Sbjct: 146 VLQLVGMLRGIAAGMKYL----ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP 201
Query: 537 VTQTTTMAT---IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSL 592
TT I + APE S ++ DV+S+G+++ E T +RP + +S
Sbjct: 202 EATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP----YWE-LSN 256
Query: 593 RRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652
EV+ + + MDC +I L + C + +R D +
Sbjct: 257 H------------EVMK--AINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS 302
Query: 653 KLKKI 657
L K+
Sbjct: 303 ILDKL 307
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 8e-16
Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 53/231 (22%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNYFL 500
S F E +R H +++K+I + NP + +++E G L +L Y L
Sbjct: 56 SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVRKYSL 113
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGE 534
D+ + + +AL YL S +H E
Sbjct: 114 DLASLILYAYQLSTALAYL----ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 169
Query: 535 DSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLR 593
+ I +MAPE + ++ DV+ +GV + E +P +
Sbjct: 170 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV-------- 221
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ ++V+ + + +C ++ L C P +R
Sbjct: 222 ---------KNNDVIG--RIENGERLPMPPNCPPTLYSLMTKCWAYDPSRR 261
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 9e-16
Identities = 46/246 (18%), Positives = 72/246 (29%), Gaps = 52/246 (21%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLD 501
A F E + ++ HRNLI++ P K +V E P GSL L H
Sbjct: 61 QPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFL 119
Query: 502 ILERLNIMIDVGSALEYLRHGHSSAPIIH--------------------------CEGED 535
+ + V + YL S IH D
Sbjct: 120 LGTLSRYAVQVAEGMGYL----ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND 175
Query: 536 SVTQTTTMAT--IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSL 592
+ APE S D + +GV L E FT + P +
Sbjct: 176 DHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL------- 228
Query: 593 RRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652
S+++ + +E + DC I ++ + C P+ R
Sbjct: 229 ----------NGSQILH-KIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD 277
Query: 653 KLKKIK 658
L + +
Sbjct: 278 FLLEAQ 283
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 52/255 (20%), Positives = 88/255 (34%), Gaps = 16/255 (6%)
Query: 105 SLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIP 164
+K++ PS + LR + LE + N + I
Sbjct: 15 LCQESKVT-EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71
Query: 165 SRI-GNLRKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNISTMR 222
+ + NL KL + + N I E +L NL+ L +++ + L +
Sbjct: 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131
Query: 223 ILTLESNQLSGRLPSTIGHSLR-NIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS 281
+L ++ N + L L L+ N I +I NS N T+L L+L N+
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNL 190
Query: 282 GHIP-NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGIL 340
+P + F +L++ + + S L +L R S L P L
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIHSLPSYG-----LENLKKLRARSTYNLKKLPTLEKL 245
Query: 341 PQLIGNFSASLQNIY 355
L+ ASL
Sbjct: 246 VALM---EASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 39/253 (15%), Positives = 79/253 (31%), Gaps = 23/253 (9%)
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLR 244
+IP+++ +N L KL I F + + + N + + + + +L
Sbjct: 23 EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 245 NIEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIPN-TFGNLRHLSVLNVMMN 302
+ + + N + I N L L + H+P+ + +L++ N
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDN 138
Query: 303 N-LTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGF 361
+ T ++ L+ L L N + I F+ Q
Sbjct: 139 INIHTIERNS-----FVGLSF--ESVILWLNKNGIQEIHN---SAFN-GTQLDELNLSDN 187
Query: 362 NDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLA 421
N+L + + + L +L++L + K +P L
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT-LE 243
Query: 422 SLTSLRELHLGSN 434
L +L E L
Sbjct: 244 KLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 17/217 (7%)
Query: 71 FGNLSFLVSLDISENNFHGHLP----KELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLR 126
F L ++IS+N+ + L +L +R+ N L P L L+
Sbjct: 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI--EKANNLLYINPEAFQNLPNLQ 107
Query: 127 ILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI--GNLRKLVNLGLWSCNL 183
L + +P+ + + +L + NI TI G + V L L +
Sbjct: 108 YLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166
Query: 184 QGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHS 242
Q +I + L L+L+DN +P +F S IL + ++ LPS +
Sbjct: 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLEN 224
Query: 243 LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNS 279
L+ + ST NL K+P ++ L+ L + S
Sbjct: 225 LKKLRA--RSTYNLK-KLP-TLEKLVALMEASLTYPS 257
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 1e-15
Identities = 48/240 (20%), Positives = 89/240 (37%), Gaps = 58/240 (24%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERL 506
F E +V++ +RH L+++ + S P + +V E+M GSL +L +L + + +
Sbjct: 309 FLQEAQVMKKLRHEKLVQLYAVVSEEPIY--IVTEYMSKGSLLDFLKGETGKYLRLPQLV 366
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGEDSVTQT 540
++ + S + Y+ +H E + +
Sbjct: 367 DMAAQIASGMAYV----ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 422
Query: 541 TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKES 599
I + APE G + K DV+S+G+LL E T+ + P M E V +
Sbjct: 423 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE------VLDQ 476
Query: 600 LP--HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+ +R+ +C S+ DL C + P++R A L+
Sbjct: 477 VERGYRM---------------PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 521
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 53/227 (23%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
E +++ + + ++++I C LV+E G L K+L + +
Sbjct: 55 EEMMREAQIMHQLDNPYIVRLIGVCQAEALM-LVMEMAGGGPLHKFLVGKREEIPVSNVA 113
Query: 507 NIMIDVGSALEYLRHGHSSAPIIH--------------------------CEGEDSVTQT 540
++ V ++YL +H +DS
Sbjct: 114 ELLHQVSMGMKYL----EEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA 169
Query: 541 TTMAT--IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVK 597
+ + + APE + S++ DV+SYGV + E + ++P +M
Sbjct: 170 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM------------ 217
Query: 598 ESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ EV+ + + + +C + L DC + + R
Sbjct: 218 -----KGPEVMA--FIEQGKRMECPPECPPELYALMSDCWIYKWEDR 257
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 58/236 (24%)
Query: 440 IPSSLAFRSFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNY 498
P S++ +F +E V++ ++H L+K+ + + P + ++ EFM GSL +L S
Sbjct: 221 KPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIY--IITEFMAKGSLLDFLKSDEG 278
Query: 499 -FLDILERLNIMIDVGSALEYLRHGHSSAPIIHC-------------------------- 531
+ + ++ + + ++ IH
Sbjct: 279 SKQPLPKLIDFSAQIAEGMAFI----EQRNYIHRDLRAANILVSASLVCKIADFGLARVI 334
Query: 532 EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEM 590
E + + I + APE + G + K DV+S+G+LLME T + P M E
Sbjct: 335 EDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE- 393
Query: 591 SLRRWVKESLP--HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
V +L +R+ +C + ++ + C P++R
Sbjct: 394 -----VIRALERGYRM---------------PRPENCPEELYNIMMRCWKNRPEER 429
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 50/237 (21%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
F E + + + H L+K CS +V E++ NG L +L SH L+ + L +
Sbjct: 50 FFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEM 109
Query: 509 MIDVGSALEYLRHGHSSAPIIHC--------------------------EGEDSVTQTTT 542
DV + +L S IH + V+ T
Sbjct: 110 CYDVCEGMAFL----ESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGT 165
Query: 543 MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESLP 601
+ + APE S+K DV+++G+L+ E F+ K P D
Sbjct: 166 KFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLY---------------- 209
Query: 602 HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658
SEVV V + +I + C E P+KR + ++ ++
Sbjct: 210 -TNSEVVL--KVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLR 263
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 1e-15
Identities = 48/239 (20%), Positives = 83/239 (34%), Gaps = 55/239 (23%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLN 507
F E V++ ++H NL++++ C+ ++ EFM G+L +L N + + L
Sbjct: 263 FLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLY 322
Query: 508 IMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV------------------TQTT 541
+ + SA+EYL IH GE+ +
Sbjct: 323 MATQISSAMEYL----EKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG 378
Query: 542 TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESL 600
I + APE + S K DV+++GVLL E T P + + V E L
Sbjct: 379 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ------VYELL 432
Query: 601 P--HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+R+ C + +L C +P R + + +
Sbjct: 433 EKDYRM---------------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 40/228 (17%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA--LVLEFMPNGSLEKWLYSHNYFLDILE 504
+ E ++LR + H ++IK C + + LV+E++P GSL +L H+ + + +
Sbjct: 78 SGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS--IGLAQ 135
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIH---------------------------CEGEDS- 536
L + + YL + IH EG +
Sbjct: 136 LLLFAQQICEGMAYL----HAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 191
Query: 537 VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWV 596
+ + + + APE E DV+S+GV L E T + T + L
Sbjct: 192 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIA 251
Query: 597 KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ + + + L+ + C + L +C R
Sbjct: 252 QGQMTVL--RLTE--LLERGERLPRPDKCPAEVYHLMKNCWETEASFR 295
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 52/232 (22%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL 500
+F++ + ++ H ++++++ C + LV +++P GSL + H L
Sbjct: 54 SGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRGAL 112
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGE 534
LN + + + YL ++H +
Sbjct: 113 GPQLLLNWGVQIAKGMYYL----EEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD 168
Query: 535 DSVTQTT-TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSL 592
D + I +MA E G + + DV+SYGV + E T P +
Sbjct: 169 DKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGL------- 221
Query: 593 RRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
RL+EV D L+ + + + C + + + + C M + R
Sbjct: 222 ----------RLAEVPD--LLEKGERLAQPQICTIDVYMVMVKCWMIDENIR 261
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 10/198 (5%)
Query: 108 YNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI 167
KL+ + PS + + + L L N + + L++L +L N + T+P+ I
Sbjct: 25 SKKLT-AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGI 80
Query: 168 -GNLRKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIF-NISTMRIL 224
L+ L L + LQ +P + L NL L L N+L L PP +F +++ + L
Sbjct: 81 FKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYL 138
Query: 225 TLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHI 284
+L N+L LP + L +++ L L N L + T+L L L N
Sbjct: 139 SLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Query: 285 PNTFGNLRHLSVLNVMMN 302
F +L L +L + N
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGV---LSKLRILRLDYNNF 135
LD+ N K +L +LR++ L NKL + P+ G+ L L L + N
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPA--GIFKELKNLETLWVTDNKL 97
Query: 136 TGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQIPTEI-G 192
+P +F L L LR + N + ++P R+ +L KL L L LQ +P +
Sbjct: 98 QA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154
Query: 193 SLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLAL 251
L +LK L L +N+L +P F ++ ++ L L++NQL R+P SL ++ L L
Sbjct: 155 KLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212
Query: 252 STN 254
N
Sbjct: 213 QEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 7e-09
Identities = 51/187 (27%), Positives = 74/187 (39%), Gaps = 30/187 (16%)
Query: 260 IPNSI-TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLS 318
IP++I + KL DL N S F L L +L + N L T + F
Sbjct: 31 IPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI----F-K 82
Query: 319 SLTNCRNLSNLALASNPL----GGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI-G 373
L N L L + N L G+ QL +L + L N L ++P +
Sbjct: 83 ELKN---LETLWVTDNKLQALPIGVFDQL-----VNLAELR---LDRNQLK-SLPPRVFD 130
Query: 374 TLQQLQGFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSGHIPPCL-ASLTSLRELHL 431
+L +L + N LQ +P + L L L L N+L +P LT L+ L L
Sbjct: 131 SLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL 188
Query: 432 GSNKLSS 438
+N+L
Sbjct: 189 DNNQLKR 195
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 65/241 (26%), Positives = 88/241 (36%), Gaps = 44/241 (18%)
Query: 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255
N ++D + KL+ IP I + + L L+SN+LS LPS H L
Sbjct: 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRL------------ 60
Query: 256 LIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWS 315
TKL L L N F L++L L V N L
Sbjct: 61 ------------TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV---- 104
Query: 316 FLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI-GT 374
L NL+ L L N L + P F SL + LG+N+L ++P +
Sbjct: 105 -FDQLV---NLAELRLDRNQLKSLPP---RVF-DSLTKLTYLSLGYNELQ-SLPKGVFDK 155
Query: 375 LQQLQGFYVPENNLQGYVPHDLCH-LERLNILNLSGNKLSGHIPPCLASLTSLRELHLGS 433
L L+ + N L+ VP L L L L N+L SL L+ L L
Sbjct: 156 LTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 434 N 434
N
Sbjct: 215 N 215
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 50/231 (21%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL 500
S++ F E +V+ N+ H L+++ C+ ++ E+M NG L +L +
Sbjct: 58 EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRF 117
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIH-------C-------------------EGE 534
+ L + DV A+EYL S +H C +
Sbjct: 118 QTQQLLEMCKDVCEAMEYL----ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 173
Query: 535 DSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLR 593
+ + + + + PE S+K D++++GVL+ E ++ K P +
Sbjct: 174 EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF-------- 225
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
SE + + + + + C E D+R
Sbjct: 226 ---------TNSETAE--HIAQGLRLYRPHLASEKVYTIMYSCWHEKADER 265
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 52/231 (22%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLD 501
S A + E V+ +V + ++ +++ C + L+ + MP G L ++ H +
Sbjct: 57 SPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIG 115
Query: 502 ILERLNIMIDVGSALEYLRHGHSSAPIIH--------------------------CEGED 535
LN + + + YL ++H E+
Sbjct: 116 SQYLLNWCVQIAKGMNYL----EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 171
Query: 536 SVTQTT-TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLR 593
I +MA E I + + DV+SYGV + E T +P D +
Sbjct: 172 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI-------- 223
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
SE+ ++ + + C + + + + C M D R
Sbjct: 224 ---------PASEISS--ILEKGERLPQPPICTIDVYMIMVKCWMIDADSR 263
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 52/240 (21%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
R F SE ++ H N+I++ + +V E+M NGSL+ +L +H+ I++ +
Sbjct: 95 RDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLV 154
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHCE-------------------------GEDSVTQTT 541
++ VG+ + YL S +H + +D T
Sbjct: 155 GMLRGVGAGMRYL----SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYT 210
Query: 542 TMAT---IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVK 597
T I + APE + S+ DV+S+GV++ E +RP M
Sbjct: 211 TTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM------------ 258
Query: 598 ESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+V+ V E A M C ++ L LDC + +R + + L +
Sbjct: 259 -----TNRDVIS--SVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 40/165 (24%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH------NYFLDI 502
F E ++ H+N+++ I + +++E M G L+ +L L +
Sbjct: 80 FLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAM 139
Query: 503 LERLNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDSV-------------- 537
L+ L++ D+ +YL IH C G V
Sbjct: 140 LDLLHVARDIACGCQYL----EENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYR 195
Query: 538 TQTTTMATIGY-----MAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
M PE EGI ++K D +S+GVLL E F+
Sbjct: 196 ASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 240
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 41/242 (16%), Positives = 81/242 (33%), Gaps = 54/242 (22%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNYFLDILER 505
+F E ++R + H N++ +I P+ ++L +M +G L +++ S + +
Sbjct: 67 EAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDL 126
Query: 506 LNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV-------------------- 537
++ + V +EYL + +H + E
Sbjct: 127 ISFGLQVARGMEYL----AEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSV 182
Query: 538 -TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRW 595
+ + A E + K DV+S+GVLL E TR P + + L +
Sbjct: 183 QQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFD--LTHF 240
Query: 596 VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655
+ + RL C S+ + C P R +++
Sbjct: 241 LAQG--RRL---------------PQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVE 283
Query: 656 KI 657
+I
Sbjct: 284 QI 285
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 54/225 (24%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
+E V++ + + ++++I C + LV+E G L K+L + + + + +
Sbjct: 65 LLAEANVMQQLDNPYIVRMIGICEAESWM-LVMEMAELGPLNKYLQQNRH-VKDKNIIEL 122
Query: 509 MIDVGSALEYLRHGHSSAPIIH--------------------------CEGEDSVTQTTT 542
+ V ++YL + +H +++ + T
Sbjct: 123 VHQVSMGMKYL----EESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 178
Query: 543 MAT--IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKES 599
+ + APE + S+K DV+S+GVL+ E F+ ++P M
Sbjct: 179 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM-------------- 224
Query: 600 LPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ SEV ++ + + C + DL C + R
Sbjct: 225 ---KGSEVTA--MLEKGERMGCPAGCPREMYDLMNLCWTYDVENR 264
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 5e-15
Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 53/231 (22%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNYFL 500
S F E +R H +++K+I + NP + +++E G L +L + L
Sbjct: 431 SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVRKFSL 488
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGE 534
D+ + + +AL YL S +H E
Sbjct: 489 DLASLILYAYQLSTALAYL----ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 544
Query: 535 DSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLR 593
+ I +MAPE + ++ DV+ +GV + E +P +
Sbjct: 545 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV-------- 596
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ ++V+ + + +C ++ L C P +R
Sbjct: 597 ---------KNNDVI--GRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRR 636
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 6e-15
Identities = 39/253 (15%), Positives = 90/253 (35%), Gaps = 33/253 (13%)
Query: 193 SLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIG--HSLRNIEYLA 250
+ +L ++ + ++++ + ++ + ++ L N+ L
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-----SVQGIQYLPNVTKLF 71
Query: 251 LSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSS 310
L+ N + I +TN L L L N + + +L+ L L++ N ++
Sbjct: 72 LN-GNKLTDIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISD---- 123
Query: 311 ADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370
++ L + L +L L +N + I + L + L N + +
Sbjct: 124 ------INGLVHLPQLESLYLGNNKITDITVL------SRLTKLDTLSLEDNQI--SDIV 169
Query: 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELH 430
+ L +LQ Y+ +N++ L L+ L++L L + ++L +
Sbjct: 170 PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227
Query: 431 LGSNKLSSSIPSS 443
L + S
Sbjct: 228 NTDGSLVTPEIIS 240
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 2e-14
Identities = 45/273 (16%), Positives = 90/273 (32%), Gaps = 35/273 (12%)
Query: 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLAD 204
+ + + + L + + + +++ + I L N+ L L
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74
Query: 205 NKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIG--HSLRNIEYLALSTNNLIGKIPN 262
NKL+ + P + N+ + L L+ N++ + L+ ++ L+L N I I
Sbjct: 75 NKLTDIKP--LTNLKNLGWLFLDENKI-----KDLSSLKDLKKLKSLSLEHNG-ISDING 126
Query: 263 SITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTN 322
+ + +L L LG N + I L L L++ N ++ + L
Sbjct: 127 -LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISD----------IVPLAG 173
Query: 323 CRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFY 382
L NL L+ N + + A L+N+ EL + L
Sbjct: 174 LTKLQNLYLSKNHISDLRA------LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227
Query: 383 VPENNLQGYVPHDLCHLERLNILNLSGNKLSGH 415
+ +L P + N+ +
Sbjct: 228 NTDGSL--VTPEIISDDGDYEKPNVKWHLPEFT 258
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 4e-08
Identities = 50/239 (20%), Positives = 80/239 (33%), Gaps = 16/239 (6%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
T L L+ L PL NL L L + EN L L++L+ +SL +N +S
Sbjct: 68 TKLFLNGNKLTDIKPL--TNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISD 123
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
+ + L +L L L N T L L++L+ L E N I + + L KL
Sbjct: 124 --INGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI--SDIVPLAGLTKL 177
Query: 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233
NL L S N + + L+NL L+L + N+ + L
Sbjct: 178 QNLYL-SKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235
Query: 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292
+ +L + + + F G + +
Sbjct: 236 PEIISDDGDYEKPNV----KWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVY 290
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 7e-15
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 32/194 (16%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA----LVLEFMPNGSLEKWLYSHNYFLDI 502
+ F E E+L+ ++H N+++ S + LV E M +G+L+ +L
Sbjct: 70 QRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIK 129
Query: 503 LERLNIMIDVGSALEYLRHGHSSAPIIHCE--------------------GEDSVTQTTT 542
+ R + + L++L H + PIIH + G ++ + +
Sbjct: 130 VLR-SWCRQILKGLQFL-HTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF 186
Query: 543 MAT-IG---YMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE 598
IG +MAPE E DVY++G+ ++E T + P E RR
Sbjct: 187 AKAVIGTPEFMAPEMYEEK-YDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSG 245
Query: 599 SLPHRLSEVVDTNL 612
P +V +
Sbjct: 246 VKPASFDKVAIPEV 259
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 8e-15
Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 49/255 (19%)
Query: 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRN 245
IP + + KNLDL+ N L L F + +++L L ++ + SL +
Sbjct: 22 IPDNLPF--STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77
Query: 246 IEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304
+ L L+ N I + + + L L + + G+L+ L LNV N +
Sbjct: 78 LSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 305 TTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDL 364
S + S+LTN L +L L+SN +Q+IY DL
Sbjct: 137 Q----SFKLPEYFSNLTN---LEHLDLSSN---------------KIQSIYC-----TDL 169
Query: 365 NGTIPTSIGTLQQLQGF----YVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-C 419
L Q+ + N + ++ RL L L N+L +P
Sbjct: 170 RV--------LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGI 219
Query: 420 LASLTSLRELHLGSN 434
LTSL+++ L +N
Sbjct: 220 FDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 23/230 (10%)
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-GNLRK 172
P + + L L +N S F+ L++L I TI +L
Sbjct: 21 KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77
Query: 173 LVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNI-STMRILTLESNQ 230
L L L +Q + L +L+ L + L+ L T++ L + N
Sbjct: 78 LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNL 135
Query: 231 LSGRLPST-IGHSLRNIEYLALSTNNLIGKIPNSITNATKL----IGLDLGFNSFSGHIP 285
+ +L N+E+L LS+N + + ++ + LDL N + P
Sbjct: 136 IQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 286 NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNP 335
F + L L + N L + +L + L +NP
Sbjct: 195 GAFKEI-RLKELALDTNQLKSVPDGI--------FDRLTSLQKIWLHTNP 235
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 49/196 (25%), Positives = 76/196 (38%), Gaps = 21/196 (10%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKEL-GQLRRLRVMSLAYNKLSGSFPSWIGV---LSKLR 126
F + L LD+S + L L + L N + S G LS L+
Sbjct: 48 FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLAL--GAFSGLSSLQ 103
Query: 127 ILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSR--IGNLRKLVNLGLWSCNL 183
L N + N +L L+ L N+I + NL L +L L S +
Sbjct: 104 KLVAVETNLAS-LENFPIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 184 QGQIPTEI-GSLQNLK----NLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPST 238
Q I L + +LDL+ N ++ I P F ++ L L++NQL +P
Sbjct: 162 Q-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLK-SVPDG 218
Query: 239 IGHSLRNIEYLALSTN 254
I L +++ + L TN
Sbjct: 219 IFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 47/180 (26%), Positives = 67/180 (37%), Gaps = 43/180 (23%)
Query: 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
+P S N LDL FN +F + L VL++ + T A S
Sbjct: 26 LPFSTKN------LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-----YQS 74
Query: 320 LTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQ 379
L++ LS L L NP+ SL + L LQ
Sbjct: 75 LSH---LSTLILTGNPI------------QSLAL-------------GAFSG---LSSLQ 103
Query: 380 GFYVPENNLQGYVPHDLCHLERLNILNLSGNKL-SGHIPPCLASLTSLRELHLGSNKLSS 438
E NL + HL+ L LN++ N + S +P ++LT+L L L SNK+ S
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 9/126 (7%)
Query: 325 NLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI-GTLQQLQGFYV 383
+ NL L+ NPL + +F S + +L ++ TI +L L +
Sbjct: 29 STKNLDLSFNPLRHLGS---YSFF-SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83
Query: 384 PENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLAS-LTSLRELHLGSNKLSSSIPS 442
N +Q L L L L+ + L +L+EL++ N + S
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI-QSFKL 141
Query: 443 SLAFRS 448
F +
Sbjct: 142 PEYFSN 147
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 40/165 (24%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH------NYFLDI 502
F E ++ H+N+++ I + ++LE M G L+ +L L +
Sbjct: 121 FLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAM 180
Query: 503 LERLNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDSV-------------- 537
L+ L++ D+ +YL IH C G V
Sbjct: 181 LDLLHVARDIACGCQYL----EENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYR 236
Query: 538 TQTTTMATIGY-----MAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
M PE EGI ++K D +S+GVLL E F+
Sbjct: 237 AGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 281
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 48/224 (21%), Positives = 84/224 (37%), Gaps = 51/224 (22%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLN 507
F E V++ ++H NL++++ C+ ++ EFM G+L +L N + + L
Sbjct: 56 FLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLY 115
Query: 508 IMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV------------------TQTT 541
+ + SA+EYL IH + GE+ +
Sbjct: 116 MATQISSAMEYL----EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG 171
Query: 542 TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESL 600
I + APE + S K DV+++GVLL E T P + G + L
Sbjct: 172 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP----YPG-IDLS------- 219
Query: 601 PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+V + L+ ++ C + +L C +P R
Sbjct: 220 -----QVYE--LLEKDYRMERPEGCPEKVYELMRACWQWNPSDR 256
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 42/181 (23%)
Query: 436 LSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKA------LVLEFMPNGSL 489
L + I +S F E ++ H ++ K++ K ++L FM +G L
Sbjct: 59 LKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDL 118
Query: 490 EKWLYSH-----NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDS 536
+L + + L + + M+D+ +EYL SS IH + ED
Sbjct: 119 HAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYL----SSRNFIHRDLAARNCMLAEDM 174
Query: 537 V-------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
+ + ++A E ++ + + DV+++GV + E T
Sbjct: 175 TVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMT 234
Query: 578 R 578
R
Sbjct: 235 R 235
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 28/155 (18%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHN-YFLDILE 504
++F +E V+ +RH NL++++ +V E+M GSL +L S L
Sbjct: 59 QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC 118
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV-----------TQTTTMAT 545
L +DV A+EYL +H + ED+V +T
Sbjct: 119 LLKFSLDVCEAMEYL----EGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG 174
Query: 546 ---IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
+ + APE E S K DV+S+G+LL E ++
Sbjct: 175 KLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 209
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 35/162 (21%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERL 506
F +E +++ ++H+ L+++ + + P + ++ E+M NGSL +L + + L I + L
Sbjct: 55 FLAEANLMKQLQHQRLVRLYAVVTQEPIY--IITEYMENGSLVDFLKTPSGIKLTINKLL 112
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGEDSVTQT 540
++ + + ++ IH E + +
Sbjct: 113 DMAAQIAEGMAFI----EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTARE 168
Query: 541 TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRP 581
I + APE + G + K DV+S+G+LL E T + P
Sbjct: 169 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 210
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 42/237 (17%), Positives = 81/237 (34%), Gaps = 53/237 (22%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLN 507
F SE +++N+ H +++K+I P + +++E P G L +L + L +L +
Sbjct: 60 FMSEAVIMKNLDHPHIVKLIGIIEEEPTW--IIMELYPYGELGHYLERNKNSLKVLTLVL 117
Query: 508 IMIDVGSALEYLRHGHSSAPIIH-------C-------------------EGEDSVTQTT 541
+ + A+ YL S +H E ED +
Sbjct: 118 YSLQICKAMAYL----ESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASV 173
Query: 542 TMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKESL 600
T I +M+PE + + DV+ + V + E + K+P +
Sbjct: 174 TRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL--------------- 218
Query: 601 PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+V+ ++ + C + L C P R T+ L +
Sbjct: 219 --ENKDVIG--VLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDV 271
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 2e-14
Identities = 36/225 (16%), Positives = 76/225 (33%), Gaps = 53/225 (23%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
E +++ + + ++++I C LV+E G L K+L + + +
Sbjct: 383 MMREAQIMHQLDNPYIVRLIGVCQAEALM-LVMEMAGGGPLHKFLVGKREEIPVSNVAEL 441
Query: 509 MIDVGSALEYLRHGHSSAPIIH--------------------------CEGEDSVTQTTT 542
+ V ++YL +H +DS +
Sbjct: 442 LHQVSMGMKYL----EEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARS 497
Query: 543 MAT--IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVKES 599
+ + APE + S++ DV+SYGV + E + ++P +M
Sbjct: 498 AGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM-------------- 543
Query: 600 LPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ EV+ + + + +C + L DC + + R
Sbjct: 544 ---KGPEVMA--FIEQGKRMECPPECPPELYALMSDCWIYKWEDR 583
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 11/188 (5%)
Query: 106 LAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPS 165
L+ + P + IL L N +L +RL L + + T
Sbjct: 17 CDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQ 71
Query: 166 RIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRIL 224
G L L L L LQ +P +L L LD++ N+L+ L P + ++ L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQEL 129
Query: 225 TLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGH 283
L+ N+L LP + +E L+L+ NNL ++P + L L L NS
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 284 IPNTFGNL 291
FG+
Sbjct: 188 PKGFFGSH 195
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 5e-14
Identities = 54/242 (22%), Positives = 74/242 (30%), Gaps = 46/242 (19%)
Query: 194 LQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALST 253
+ + ++ L+ +PP + IL L N L + L L
Sbjct: 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDR 64
Query: 254 NNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQ 313
L K+ L LDL N +P L L+VL+V N LT+ A
Sbjct: 65 AEL-TKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA-- 119
Query: 314 WSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIG 373
L L L L L N L + P G +
Sbjct: 120 ---LRGLGE---LQELYLKGNELKTLPP---GLLTP------------------------ 146
Query: 374 TLQQLQGFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG 432
+L+ + NNL +P L LE L+ L L N L IP L L
Sbjct: 147 -TPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203
Query: 433 SN 434
N
Sbjct: 204 GN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 101 LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTG-PIPNSLFNLSRLEMLRAEFNII 159
++ L+ N L + + ++L L LD T + +L L L++ N +
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL---SHNQL 89
Query: 160 GGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIF-N 217
++P L L L + L +P L L+ L L N+L L PP +
Sbjct: 90 -QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL-PPGLLTP 146
Query: 218 ISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGF 277
+ L+L +N L+ LP+ + + L N++ L L N+L IP + L L
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204
Query: 278 N 278
N
Sbjct: 205 N 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 47/236 (19%), Positives = 75/236 (31%), Gaps = 49/236 (20%)
Query: 180 SCNLQGQ----IPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGR 234
N + +P ++ ++ L L++N L + + L L+ +L+ +
Sbjct: 14 EVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELT-K 69
Query: 235 LPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHL 294
L + +L + L LS N L +P L LD+ FN + L L
Sbjct: 70 LQ--VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 295 SVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNI 354
L + N L T L+ L L+LA+N L + L
Sbjct: 127 QELYLKGNELKTLPPGL-----LTPTP---KLEKLSLANNNLTELPAGL----------- 167
Query: 355 YAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGN 410
N L L + EN+L +P L L GN
Sbjct: 168 ------LNGLE-----------NLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 42/187 (22%), Positives = 57/187 (30%), Gaps = 46/187 (24%)
Query: 260 IPNSI-TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLS 318
+P + + T L L N T L+ LN+ LT L
Sbjct: 25 LPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----------LQ 71
Query: 319 SLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQL 378
L L L+ N L ++P TL L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-----------------------------SLPLLGQTLPAL 102
Query: 379 QGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKLS 437
V N L L L L L L GN+L +PP L L +L L +N L
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL- 160
Query: 438 SSIPSSL 444
+ +P+ L
Sbjct: 161 TELPAGL 167
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 41/137 (29%), Positives = 54/137 (39%), Gaps = 14/137 (10%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
L+LS L ++PL L L LD+S N L L L+ + L N+L
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 114 SFPSWIGV---LSKLRILRLDYNNFTGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRIGN 169
+ P G+ KL L L NN T +P L L L+ L + N + TIP
Sbjct: 138 TLPP--GLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL-YTIPKGFFG 193
Query: 170 LRKLVNLGL----WSCN 182
L L W CN
Sbjct: 194 SHLLPFAFLHGNPWLCN 210
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 18/132 (13%)
Query: 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQ 376
++S N L + P LP ++ L N L ++
Sbjct: 9 VASHLEV-NCDKRNLTALPPD--LP-------KDTTILH---LSENLLYTFSLATLMPYT 55
Query: 377 QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436
+L + L L L L+LS N+L +P +L +L L + N+L
Sbjct: 56 RLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 437 SSSIPSSLAFRS 448
+S+P A R
Sbjct: 113 -TSLPLG-ALRG 122
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 325 NLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVP 384
+ + L L+ N L + L +L + GTL L +
Sbjct: 32 DTTILHLSENLLYTFSL---ATLM-PYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLS 85
Query: 385 ENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKLSSSIPSS 443
N LQ +P L L +L++S N+L+ +P L L L+EL+L N+L ++P
Sbjct: 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPG 142
Query: 444 LAFRSFDS 451
L
Sbjct: 143 L----LTP 146
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 4e-14
Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 39/168 (23%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
SF ++ + H++L+ C D LV EF+ GSL+ +L + ++IL +L
Sbjct: 57 ESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKL 116
Query: 507 NIMIDVGSALEYLRHGHSSAPIIH----------CEGEDSVTQTTTMATIG--------- 547
+ + +A+ +L +IH ED T +
Sbjct: 117 EVAKQLAAAMHFL----EENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVL 172
Query: 548 ---Y-------MAPE---YGSEGIVSAKCDVYSYGVLLMETFTR-KRP 581
+ PE ++ D +S+G L E + +P
Sbjct: 173 PKDILQERIPWVPPECIENP--KNLNLATDKWSFGTTLWEICSGGDKP 218
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 41/180 (22%)
Query: 436 LSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKA-----LVLEFMPNGSLE 490
+ S F SE +++ H N+I+++ C + ++L FM G L
Sbjct: 70 MKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLH 129
Query: 491 KWLYSH-----NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV 537
+L + + L M+D+ +EYL S+ +H + +D
Sbjct: 130 TYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYL----SNRNFLHRDLAARNCMLRDDMT 185
Query: 538 -------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578
+ ++A E ++ + ++K DV+++GV + E TR
Sbjct: 186 VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATR 245
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 4e-13
Identities = 42/218 (19%), Positives = 76/218 (34%), Gaps = 12/218 (5%)
Query: 120 GVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGL 178
+ + L+L + ++ NL + + ++ + S NL K+ ++ +
Sbjct: 28 SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87
Query: 179 WSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPT-IFNISTMRILTLESNQLSGRLP 236
+ I + L LK L + + L T +++ IL + N +P
Sbjct: 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147
Query: 237 STIGHSLRN-IEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP-NTFGNLRH- 293
L N L L NN + N TKL + L N + I + FG +
Sbjct: 148 VNAFQGLCNETLTLKLY-NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206
Query: 294 LSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLAL 331
S+L+V ++T S L L + L
Sbjct: 207 PSLLDVSQTSVTALPSKG-----LEHLKELIARNTWTL 239
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 43/253 (16%), Positives = 78/253 (30%), Gaps = 57/253 (22%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
L L + L F NL + + +S + L++L S
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV----------TLQQLE---------S 73
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK 172
SF + LSK+ + + I L
Sbjct: 74 HSFYN----LSKVTHIEIRNTRNLTYIDPDALK-----------------------ELPL 106
Query: 173 LVNLGLWSCNLQGQIP--TEIGSLQNLKNLDLADNKLSGLIPPTIFN--ISTMRILTLES 228
L LG+++ L+ P T++ S L++ DN IP F + L L +
Sbjct: 107 LKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165
Query: 229 NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI--TNATKLIGLDLGFNSFSGHIP- 285
N + + + ++ + L+ N + I + LD+ S + +P
Sbjct: 166 NGFT-SVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222
Query: 286 NTFGNLRHLSVLN 298
+L+ L N
Sbjct: 223 KGLEHLKELIARN 235
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 35/257 (13%), Positives = 78/257 (30%), Gaps = 45/257 (17%)
Query: 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255
++ + + + P++ + + L L L +PS +L NI + +S +
Sbjct: 12 QEEDFRVTCKDIQRI--PSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV 66
Query: 256 LIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWS 315
+ ++ ++F NL ++ + + T
Sbjct: 67 TLQQLE-----------------------SHSFYNLSKVTHIEIRNTRNLTYIDP----- 98
Query: 316 FLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI--G 373
+L L L + + L S + E+ N +IP + G
Sbjct: 99 --DALKELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153
Query: 374 TLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTS-LRELHL 431
+ + N V + +L+ + L+ NK I + S L +
Sbjct: 154 LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212
Query: 432 GSNKLSSSIPSSLAFRS 448
+ +++PS
Sbjct: 213 SQTSV-TALPSK-GLEH 227
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-10
Identities = 36/258 (13%), Positives = 75/258 (29%), Gaps = 42/258 (16%)
Query: 180 SCNLQGQIPTEIGSL-QNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPS 237
+ + I SL + + L L + L IP F N+ + + + + +L S
Sbjct: 15 DFRVTCKDIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLES 73
Query: 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVL 297
++L + ++ + + I P+ L L L
Sbjct: 74 HSFYNLSKVTHIEIRNTRNLTYID-----------------------PDALKELPLLKFL 110
Query: 298 NVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNP-LGGILPQLIGNFSASLQNIYA 356
+ L + + S L + NP + I +
Sbjct: 111 GIFNTGLK----MFPDLTKVYSTD---IFFILEITDNPYMTSIPVNAFQGLCNETLTLK- 162
Query: 357 FELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCH--LERLNILNLSGNKLSG 414
L N ++ +L Y+ +N + D ++L++S ++
Sbjct: 163 --LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218
Query: 415 HIPP-CLASLTSLRELHL 431
+P L L L +
Sbjct: 219 ALPSKGLEHLKELIARNT 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-13
Identities = 50/252 (19%), Positives = 87/252 (34%), Gaps = 53/252 (21%)
Query: 193 SLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252
+ +L ++ + L +I+ + +
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN---------------------------ELNSIDQIIAN 54
Query: 253 TNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD 312
N+ I + I + L L N + I NL++L L + N +
Sbjct: 55 -NSDIKSVQG-IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKD------ 104
Query: 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372
LSSL + + L +L+L N + I L + + LG N + T T +
Sbjct: 105 ----LSSLKDLKKLKSLSLEHNGISDINGL------VHLPQLESLYLGNNKI--TDITVL 152
Query: 373 GTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG 432
L +L + +N + VP L L +L L LS N +S + LA L +L L L
Sbjct: 153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELF 208
Query: 433 SNKLSSSIPSSL 444
S + + +
Sbjct: 209 SQECLNKPINHQ 220
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 36/194 (18%), Positives = 73/194 (37%), Gaps = 27/194 (13%)
Query: 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLAD 204
+ + + + L + + + +++ + I L N+ L L
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77
Query: 205 NKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIG--HSLRNIEYLALSTNNLIGKIPN 262
NKL+ + P + N+ + L L+ N++ + L+ ++ L+L +N I I
Sbjct: 78 NKLTDIKP--LANLKNLGWLFLDENKV-----KDLSSLKDLKKLKSLSLE-HNGISDING 129
Query: 263 SITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTN 322
+ + +L L LG N + I L L L++ N ++ + L
Sbjct: 130 -LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISD----------IVPLAG 176
Query: 323 CRNLSNLALASNPL 336
L NL L+ N +
Sbjct: 177 LTKLQNLYLSKNHI 190
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 51/231 (22%), Positives = 78/231 (33%), Gaps = 20/231 (8%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
T L L+ L PL NL L L + EN L L++L+ +SL +N +S
Sbjct: 71 TKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD 126
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
+ L +L L L N T L L++L+ L E N I S I L L
Sbjct: 127 ING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI-----SDIVPLAGL 177
Query: 174 VNLG-LWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232
L L+ + L+NL L+L + N+ + L
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237
Query: 233 GRLPSTIGHSLRNIEYLALS-TNNLIGKIPNSITNATKLIGLDLGFNSFSG 282
P I + +Y + +L + + + F G
Sbjct: 238 T--PEIISD---DGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 283
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 40/166 (24%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---------NYF 499
F +E V++ ++++++ S +++E M G L+ +L S
Sbjct: 75 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAP 134
Query: 500 LDILERLNIMIDVGSALEYLRHGHSSAPIIH-------CE-GEDSV-------------- 537
+ + + + ++ + YL ++ +H C ED
Sbjct: 135 PSLSKMIQMAGEIADGMAYL----NANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 190
Query: 538 -----TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578
+ + +M+PE +G+ + DV+S+GV+L E T
Sbjct: 191 TDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL 236
|
| >3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 46/178 (25%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH----- 496
+ A + F E E+L N++H +++K C + D +V E+M +G L K+L +H
Sbjct: 57 TLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAM 116
Query: 497 ----------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV- 537
L + + L+I + S + YL +S +H + G + +
Sbjct: 117 ILVDGQPRQAKGELGLSQMLHIASQIASGMVYL----ASQHFVHRDLATRNCLVGANLLV 172
Query: 538 ------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
TM I +M PE + + DV+S+GV+L E FT
Sbjct: 173 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFT 230
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-12
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRN 245
IPT + + + L N + + PP F +R + L +NQ+S L LR+
Sbjct: 26 IPTNLPE--TITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81
Query: 246 IEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304
+ L L N + ++P S+ L L L N + + F +L +L++L++ N L
Sbjct: 82 LNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 305 TTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
T + + R + + LA NP
Sbjct: 141 QTIAKGT--------FSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 9e-10
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 126 RILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQ 184
+RL+ N P + +L + N I + LR L +L L+ +
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 185 GQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHS 242
++P + L +L+ L L NK++ + F ++ + +L+L N+L +
Sbjct: 94 -ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSP 150
Query: 243 LRNIEYLALSTN 254
LR I+ + L+ N
Sbjct: 151 LRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 12/132 (9%)
Query: 80 LDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGV---LSKLRILRLDYNNFT 136
+ + +N P ++LR + L+ N++S L L L L N T
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKIT 93
Query: 137 GPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQIPTEI-GS 193
+P SLF L L++L N I + +L L L L+ LQ I
Sbjct: 94 E-LPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSP 150
Query: 194 LQNLKNLDLADN 205
L+ ++ + LA N
Sbjct: 151 LRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 34/176 (19%), Positives = 60/176 (34%), Gaps = 44/176 (25%)
Query: 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
+P +IT + L N+ P F + L +++ N ++ + A
Sbjct: 30 LPETITE------IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-----FQG 78
Query: 320 LTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQ 379
L + L++L L N + + L F L LQ
Sbjct: 79 LRS---LNSLVLYGNKITELPKSL-----------------FEGLF-----------SLQ 107
Query: 380 GFYVPENNLQGYVPHDL-CHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSN 434
+ N + + D L LN+L+L NKL + L +++ +HL N
Sbjct: 108 LLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 45/170 (26%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF--------- 499
F E E+L ++H+++++ C+ +V E+M +G L ++L SH
Sbjct: 90 FQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGED 149
Query: 500 -----LDILERLNIMIDVGSALEYLRHGHSSAPIIH-------C-EGEDSV--------- 537
L + + L + V + + YL + +H C G+ V
Sbjct: 150 VAPGPLGLGQLLAVASQVAAGMVYL----AGLHFVHRDLATRNCLVGQGLVVKIGDFGMS 205
Query: 538 ----------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
TM I +M PE + + DV+S+GV+L E FT
Sbjct: 206 RDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFT 255
|
| >3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 29/178 (16%), Positives = 64/178 (35%), Gaps = 46/178 (25%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH----- 496
F E + ++H N++ ++ + +++ + +G L ++L
Sbjct: 52 EGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSD 111
Query: 497 ----------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV- 537
L+ + ++++ + + +EYL SS ++H + +
Sbjct: 112 VGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYL----SSHHVVHKDLATRNVLVYDKLNV 167
Query: 538 ------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
++ I +MAPE G S D++SYGV+L E F+
Sbjct: 168 KISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFS 225
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 56/257 (21%), Positives = 90/257 (35%), Gaps = 64/257 (24%)
Query: 442 SSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF- 499
S R F E EVL + H N+I ++ +C + + L +E+ P+G+L +L
Sbjct: 65 SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLE 124
Query: 500 --------------LDILERLNIMIDVGSALEYLRHGHSSAPIIH-------C-EGEDSV 537
L + L+ DV ++YL S IH GE+ V
Sbjct: 125 TDPAFAIANSTASTLSSQQLLHFAADVARGMDYL----SQKQFIHRDLAARNILVGENYV 180
Query: 538 ----------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KR 580
+T + +MA E + + + DV+SYGVLL E +
Sbjct: 181 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGT 240
Query: 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMES 640
P M E L + + +RL ++C + DL C E
Sbjct: 241 PYCGMTCAE--LYEKLPQG--YRL---------------EKPLNCDDEVYDLMRQCWREK 281
Query: 641 PDKRMHMTDAAAKLKKI 657
P +R L ++
Sbjct: 282 PYERPSFAQILVSLNRM 298
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRN 245
IP I L L +N+ + L IF + +R + +N+++ +
Sbjct: 26 IPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82
Query: 246 IEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIPN-TFGNLRHLSVLNVMMNN 303
+ + L++N L + + + L L L N + + N +F L + +L++ N
Sbjct: 83 VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140
Query: 304 LTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
+TT + A +L +LS L L +NP
Sbjct: 141 ITTVAPGA-----FDTLH---SLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 26/132 (19%)
Query: 126 RILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG 185
LRL+ N FT +F L +L + + +
Sbjct: 35 AELRLNNNEFTVLEATGIFK-----------------------KLPQLRKINFSNNKITD 71
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLR 244
+ + L N+L + +F + +++ L L SN+++ + + L
Sbjct: 72 IEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLS 129
Query: 245 NIEYLALSTNNL 256
++ L+L N +
Sbjct: 130 SVRLLSLYDNQI 141
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 105 SLAYNKLSGSFPSWI-GVLSKLRILRLDYNNFTGPIPNSLFN-LSRLEMLRAEFNIIGGT 162
L N+ + + I L +LR + N T I F S + + N +
Sbjct: 38 RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLE-N 95
Query: 163 IPSRI-GNLRKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIF-NIS 219
+ ++ L L L L S + + + L +++ L L DN+++ + P F +
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLH 153
Query: 220 TMRILTLESNQL 231
++ L L +N
Sbjct: 154 SLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 17/148 (11%)
Query: 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI-TNATK 269
IP I L L +N+ + + I L + + S NN I I A+
Sbjct: 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASG 82
Query: 270 LIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNL 329
+ + L N F L L L + N +T + + L+ ++ L
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-----FIGLS---SVRLL 134
Query: 330 ALASNPLGGILPQLIGNFS--ASLQNIY 355
+L N + + P G F SL +
Sbjct: 135 SLYDNQITTVAP---GAFDTLHSLSTLN 159
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 23/169 (13%)
Query: 325 NLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVP 384
+ L L +N + G F L + N + + + +
Sbjct: 33 YTAELRLNNNEFTVLEAT--GIFK-KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89
Query: 385 ENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKLSSSIPSS 443
N L+ LE L L L N+++ + L+S+R L L N++ +++
Sbjct: 90 SNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTVAPG 147
Query: 444 LAFRS-------------FDSECEV--LRN-VRHRNLIKIISSCSNPDF 476
AF + F+ C + L +R + ++ C P F
Sbjct: 148 -AFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYF 195
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 66/375 (17%), Positives = 128/375 (34%), Gaps = 59/375 (15%)
Query: 101 LRVMSLAYNKLS-GSFPSWIGVLSKLRILRLDYNNFT----GPIPNSLFNLSRLEMLRAE 155
++ + + +LS + + +L + +++RLD T I ++L L L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 156 FNIIGGTIPSRIGNL-----RKLVNLGLWSCNLQGQ----IPTEIGSLQNLKNLDLADNK 206
N +G + K+ L L +C L G + + + +L L+ L L+DN
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 207 LSG-----LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLR---NIEYLALSTNNLIG 258
L L + + L LE LS + LR + + L +S N++
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184
Query: 259 KIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLS 318
+++ L + L L + +T+++
Sbjct: 185 A-------GVRVLCQGLKDSPCQ------------LEALKLESCGVTSDNCRD----LCG 221
Query: 319 SLTNCRNLSNLALASNPLGGI-LPQLIGNFSASLQNIYAFELGFNDLN----GTIPTSIG 373
+ + +L LAL SN LG + + +L + + + G + +
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281
Query: 374 TLQQLQGFYVPENNLQGYVPHDLC-----HLERLNILNLSGNKLSG----HIPPCLASLT 424
+ L+ + N L LC +L L + + H LA
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341
Query: 425 SLRELHLGSNKLSSS 439
L EL + +N+L +
Sbjct: 342 FLLELQISNNRLEDA 356
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 76/435 (17%), Positives = 138/435 (31%), Gaps = 95/435 (21%)
Query: 51 QRVTALNLSDMGLGGT----IPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSL 106
Q+ + L D GL I L L++ N + Q L+ S
Sbjct: 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG--LQTPS- 84
Query: 107 AYNKLSGSFPSWIGVLSKLRILRLDYNNFT----GPIPNSLFNLSRLEMLRAEFNIIGGT 162
K++ L L T G + ++L L L+ L N++G
Sbjct: 85 ----------------CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128
Query: 163 IPSRIGNLR-----KLVNLGLWSCNLQGQIPTEIGSL----QNLKNLDLADNKLS----- 208
+ +L L L C+L + S+ + K L +++N ++
Sbjct: 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188
Query: 209 ----GLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLR---NIEYLALSTNNLIGKIP 261
GL + L LES ++ + + ++ LAL +N L
Sbjct: 189 VLCQGLKDSP----CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL----- 239
Query: 262 NSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLT 321
D+G + + L L + +T + L
Sbjct: 240 -----------GDVGMAELCPGLLHP---SSRLRTLWIWECGITAKGCGD----LCRVLR 281
Query: 322 NCRNLSNLALASNPLGG----ILPQLIGNFSASLQNIYAFELGFNDLNGT----IPTSIG 373
+L L+LA N LG +L + + L++++ + + +
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW---VKSCSFTAACCSHFSSVLA 338
Query: 374 TLQQLQGFYVPENNLQGYVPHDLC-----HLERLNILNLSGNKLS----GHIPPCLASLT 424
+ L + N L+ +LC L +L L+ +S + L +
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398
Query: 425 SLRELHLGSNKLSSS 439
SLREL L +N L +
Sbjct: 399 SLRELDLSNNCLGDA 413
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 47/252 (18%), Positives = 86/252 (34%), Gaps = 43/252 (17%)
Query: 219 STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL----IGKIPNSITNATKLIGLD 274
++ L ++ +LS + + L+ + + L L I +++ L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 275 LGFNSFSG----------HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCR 324
L N P+ + L++ LT S+L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSC-----KIQKLSLQNCCLTGAGCGV----LSSTLRTLP 113
Query: 325 NLSNLALASNPLGG----ILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTL----Q 376
L L L+ N LG +L + + + L+ + L + L+ + ++
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ---LEYCSLSAASCEPLASVLRAKP 170
Query: 377 QLQGFYVPENNLQGYVPHDLC-----HLERLNILNLSGNKLS----GHIPPCLASLTSLR 427
+ V N++ LC +L L L ++ + +AS SLR
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230
Query: 428 ELHLGSNKLSSS 439
EL LGSNKL
Sbjct: 231 ELALGSNKLGDV 242
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 33/185 (17%)
Query: 125 LRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ 184
+L L +NN + L L +L L +L
Sbjct: 41 TALLDLSHNNLSRLRAEWTPT-----------------------RLTNLHSLLLSHNHLN 77
Query: 185 GQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHS 242
I +E + NL+ LDL+ N L L +F ++ + +L L +N + +
Sbjct: 78 -FISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIV-VVDRNAFED 134
Query: 243 LRNIEYLALSTNNLIGKIPN----SITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLN 298
+ ++ L LS N I + P KL+ LDL N L
Sbjct: 135 MAQLQKLYLS-QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
Query: 299 VMMNN 303
+ ++N
Sbjct: 194 LYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 37/172 (21%), Positives = 59/172 (34%), Gaps = 41/172 (23%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLAYNKL----SGSFPSWIGVLSKL 125
L+ L SL +S N+ + + E + LR + L+ N L F L L
Sbjct: 60 PTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD----LQAL 114
Query: 126 RILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG 185
+L L N+ + + F ++ +L L L +
Sbjct: 115 EVLLLYNNHIVV-VDRNAFE-----------------------DMAQLQKLYLSQNQIS- 149
Query: 186 QIPTEI----GSLQNLKNLDLADNKLSGLIPPTIFNIS--TMRILTLESNQL 231
+ P E+ L L LDL+ NKL L + + L L +N L
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 14/189 (7%)
Query: 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255
L + +L +P ++ S +L L N LS L N+ L LS N+
Sbjct: 19 ASNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75
Query: 256 LIGKIPNSI-TNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314
+ I + L LDL N F +L+ L VL + N++ +A
Sbjct: 76 -LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA--- 131
Query: 315 SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGT 374
+ L L L+ N + +LI + + L + +L N L T +
Sbjct: 132 -----FEDMAQLQKLYLSQNQISRFPVELIKDGN-KLPKLMLLDLSSNKLKKLPLTDLQK 185
Query: 375 LQQLQGFYV 383
L +
Sbjct: 186 LPAWVKNGL 194
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 9/130 (6%)
Query: 324 RNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI-GTLQQLQGFY 382
+ L L+ N L + + +L ++ L N LN I + + L+
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHNHLN-FISSEAFVPVPNLRYLD 94
Query: 383 VPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKLSSSIP 441
+ N+L L+ L +L L N + + + L++L+L N++ S P
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI-SRFP 152
Query: 442 SSLAFRSFDS 451
+ +
Sbjct: 153 VE-LIKDGNK 161
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 37/166 (22%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKA-----LVLEFMPNGSLEKWLYSHNYFLDIL 503
+E + L V H ++++I + + D +V+E++ SL++ L +
Sbjct: 126 AMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQK---LPVA 182
Query: 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV-----------TQT-TTM 543
E + ++++ AL YL HS +++ + E+ +
Sbjct: 183 EAIAYLLEILPALSYL---HS-IGLVYNDLKPENIMLTEEQLKLIDLGAVSRINSFGYLY 238
Query: 544 ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589
T G+ APE + D+Y+ G L G
Sbjct: 239 GTPGFQAPEI-VRTGPTVATDIYTVGRTLAALTLDLPT----RNGR 279
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 46/255 (18%), Positives = 86/255 (33%), Gaps = 73/255 (28%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKA----LVLEFMPNGSLEKWLYSH---NYFLDILE 504
E ++ R H N++++++ C L+L F G+L + FL +
Sbjct: 76 EADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQ 135
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIH---------------------------------- 530
L +++ + LE + H+ H
Sbjct: 136 ILWLLLGICRGLEAI---HA-KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS 191
Query: 531 ---CEGEDSVTQTTTMATIGYMAPE----YGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583
+D Q T++ Y APE I + DV+S G +L + P D
Sbjct: 192 RQALTLQDWAAQRCTIS---YRAPELFSVQSHCVI-DERTDVWSLGCVLYAMMFGEGPYD 247
Query: 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643
+F S+ V+ L S S+ + LL+ M + +D P +
Sbjct: 248 MVFQKGDSVALAVQNQLSIPQS-----------PRHSSALWQLLNSM-MTVD-----PHQ 290
Query: 644 RMHMTDAAAKLKKIK 658
R H+ ++L+ ++
Sbjct: 291 RPHIPLLLSQLEALQ 305
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 48/180 (26%)
Query: 442 SSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKA-LVLEFMPNGSLEKWLYSH--- 496
+ R+ SE ++L ++ H N++ ++ +C+ P +++EF G+L +L S
Sbjct: 70 THSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNE 129
Query: 497 ------------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDS 536
FL + + V +E+L +S IH + E +
Sbjct: 130 FVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL----ASRKCIHRDLAARNILLSEKN 185
Query: 537 VT-------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
V + + +MAPE + + + + DV+S+GVLL E F+
Sbjct: 186 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 245
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 37/138 (26%)
Query: 479 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL-RHGHSSAPIIHC------ 531
+ + + L L L + I+ +GSAL+ G H
Sbjct: 111 VDMRLINGVDLAAMLRRQ-GPLAPPRAVAIVRQIGSALDAAHAAG-----ATHRDVKPEN 164
Query: 532 -------------------EGEDSVTQT-TTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571
++ +TQ T+ T+ YMAPE SE + + D+Y+ +
Sbjct: 165 ILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCV 224
Query: 572 LMETFTRKRPTDEMFTGE 589
L E T P + G+
Sbjct: 225 LYECLTGSPP----YQGD 238
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 54/186 (29%)
Query: 442 SSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH----- 496
S R SE VL+ V H ++IK+ +CS L++E+ GSL +L
Sbjct: 66 SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGP 125
Query: 497 ------------------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE------ 532
L + + ++ + ++YL + ++H +
Sbjct: 126 GYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL----AEMKLVHRDLAARNI 181
Query: 533 --GEDSV-------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571
E ++ + +MA E + I + + DV+S+GVL
Sbjct: 182 LVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVL 241
Query: 572 LMETFT 577
L E T
Sbjct: 242 LWEIVT 247
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 36/203 (17%), Positives = 72/203 (35%), Gaps = 27/203 (13%)
Query: 242 SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMM 301
L N L + + + + + + ++ + +L L++
Sbjct: 17 GLANAVKQNLG-KQSVTDLVS-QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72
Query: 302 NNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGF 361
N ++ LS L + L L++ N L + SA L ++ L
Sbjct: 73 NQISD----------LSPLKDLTKLEELSVNRNRLKNLNG----IPSACLSRLF---LDN 115
Query: 362 NDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLA 421
N+L S+ L+ L+ + N L+ V L L +L +L+L GN+++ + L
Sbjct: 116 NEL--RDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT-NTGG-LT 169
Query: 422 SLTSLRELHLGSNKLSSSIPSSL 444
L + + L K +
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQ 192
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 42/257 (16%), Positives = 81/257 (31%), Gaps = 56/257 (21%)
Query: 189 TEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIG--HSLRNI 246
L N +L ++ L+ +S ++ +++ + ++ N+
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-----SLAGMQFFTNL 65
Query: 247 EYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306
+ L LS +N I + + + TKL L + N L L + N N L
Sbjct: 66 KELHLS-HNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN---NELRD 120
Query: 307 ESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNG 366
SL + +NL L++ +N L I
Sbjct: 121 ----------TDSLIHLKNLEILSIRNNKLKSI--------------------------- 143
Query: 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSL 426
+G L +L+ + N + L L+++N ++L+G K L
Sbjct: 144 ---VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
Query: 427 RELHLGSNKLSSSIPSS 443
+ + S S
Sbjct: 199 NTVKDPDGRWISPYYIS 215
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 18/226 (7%)
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112
NL + + LS + + + +N L + L+ + L++N++S
Sbjct: 21 AVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQIS 76
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK 172
P + L+KL L ++ N + + L L + N + + +L+
Sbjct: 77 DLSP--LKDLTKLEELSVNRNRLKN-LNG--IPSACLSRLFLDNNEL--RDTDSLIHLKN 129
Query: 173 LVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232
L L + + L+ +G L L+ LDL N+++ + + + + L +
Sbjct: 130 LEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185
Query: 233 GRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN 278
P L + I P I+N + + +
Sbjct: 186 -NEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWE 228
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 34/188 (18%), Positives = 76/188 (40%), Gaps = 22/188 (11%)
Query: 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132
L+ V ++ + + +L ++ + + + + + L+ L L +
Sbjct: 17 GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72
Query: 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG 192
N + + L +L++LE L N R+ NL + + L L +
Sbjct: 73 NQISD-LSP-LKDLTKLEELSVNRN--------RLKNLNGIPSACLSRLFLDNNELRDTD 122
Query: 193 SLQNLKNL---DLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249
SL +LKNL + +NKL ++ + +S + +L L N+++ T L+ + ++
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLT---RLKKVNWI 177
Query: 250 ALSTNNLI 257
L+ +
Sbjct: 178 DLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 48/188 (25%)
Query: 251 LSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSS 310
+ I ++ + +LG S + + + L + N +N+ +
Sbjct: 3 IQRPTPINQVFP-DPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQS---- 55
Query: 311 ADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370
L+ + NL L L+ N + + +
Sbjct: 56 ------LAGMQFFTNLKELHLSHNQISDL------------------------------S 79
Query: 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELH 430
+ L +L+ V N L+ L RL L N+L L L +L L
Sbjct: 80 PLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELR-DTDS-LIHLKNLEILS 134
Query: 431 LGSNKLSS 438
+ +NKL S
Sbjct: 135 IRNNKLKS 142
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 11/162 (6%)
Query: 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130
+L+ L L ++ N L RL L N+L + L L IL +
Sbjct: 81 LKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRD--TDSLIHLKNLEILSI 135
Query: 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTE 190
N I L LS+LE+L N I T + L+K+ + L +
Sbjct: 136 RNNKLKS-IVM-LGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKY 191
Query: 191 IGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232
L + D + + P I N + +
Sbjct: 192 QPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPV 231
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 45/244 (18%), Positives = 83/244 (34%), Gaps = 53/244 (21%)
Query: 451 SECEVLRNVRHRNLIKI--ISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER--L 506
E EVL+ + H+N++K+ I + K L++EF P GSL L + + E L
Sbjct: 56 REFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFL 115
Query: 507 NIMIDVGSALEYLRHGHSSAPIIH----------CEGEDS--------------VTQTTT 542
++ DV + +L + I+H GED +
Sbjct: 116 IVLRDVVGGMNHL-RENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ 171
Query: 543 MATI----GYMAPEYGSEGIV--------SAKCDVYSYGVLLMETFTRKRPTDEMFTGEM 590
++ Y+ P+ ++ A D++S GV T P
Sbjct: 172 FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRR 231
Query: 591 S---LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLS--IMDLA---LDCCMES-P 641
+ + + + +S V + + + C LS + L L +E+
Sbjct: 232 NKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQ 291
Query: 642 DKRM 645
+K
Sbjct: 292 EKCW 295
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 7e-11
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 128 LRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQ 186
L L + L++L L ++N + T+ + + +L +L LGL + L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-S 97
Query: 187 IPTEI-GSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLR 244
+P + L L L L N+L L P +F ++ ++ L L +NQL +P+ L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155
Query: 245 NIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN 278
N++ L+LSTN L + KL + L N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 5e-09
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 25/188 (13%)
Query: 180 SCNLQGQ-----------IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLES 228
+CN + +P+ I + + + LDL L+ L T ++ + L L+
Sbjct: 11 TCNEGKKEVDCQGKSLDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY 68
Query: 229 NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIPNT 287
NQL L + + L + L L+ N L +P + + T+L L LG N
Sbjct: 69 NQLQT-LSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126
Query: 288 FGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF 347
F L L L + N L + + A F LT NL L+L++N L + P +
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGA----F-DKLT---NLQTLSLSTNQLQSV-PHGAFDR 177
Query: 348 SASLQNIY 355
LQ I
Sbjct: 178 LGKLQTIT 185
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGV---LSKLRILRLDYNNF 135
LD+ L +L ++L YN+L + + GV L++L L L N
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSA--GVFDDLTELGTLGLANNQL 95
Query: 136 TGPIPNSLF-NLSRLEMLRAEFNIIGGTIPSRI-GNLRKLVNLGLWSCNLQGQIPTEI-G 192
+P +F +L++L+ L N + ++PS + L KL L L + LQ IP
Sbjct: 96 AS-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD 152
Query: 193 SLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQ 230
L NL+ L L+ N+L +P F + ++ +TL NQ
Sbjct: 153 KLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQ 190
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 53/194 (27%), Positives = 75/194 (38%), Gaps = 44/194 (22%)
Query: 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
+P+ I T+ LDL + TF L L+ LN+ N L T S+
Sbjct: 29 VPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD----- 81
Query: 320 LTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQ 379
LT L L LA+N L LP + F+ L QL
Sbjct: 82 LTE---LGTLGLANNQLAS-LPLGV----------------FDHL-----------TQLD 110
Query: 380 GFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKLS 437
Y+ N L+ +P + L +L L L+ N+L IP LT+L+ L L +N+L
Sbjct: 111 KLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQL- 167
Query: 438 SSIPSSLAFRSFDS 451
S+P AF
Sbjct: 168 QSVPHG-AFDRLGK 180
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 45/177 (25%)
Query: 442 SSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---- 496
+ + SE +++ ++ +H N++ ++ +C++ ++ E+ G L +L
Sbjct: 89 HADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVL 148
Query: 497 ---------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------CE-GEDSVT- 538
N + L+ V + +L +S IH V
Sbjct: 149 ETDPAFAIANSTASTRDLLHFSSQVAQGMAFL----ASKNCIHRDVAARNVLLTNGHVAK 204
Query: 539 ------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
+ + +MAPE + + + + DV+SYG+LL E F+
Sbjct: 205 IGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 261
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 47/179 (26%)
Query: 442 SSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---- 496
+ SE E+++ + +H+N+I ++ +C+ +++E+ G+L ++L +
Sbjct: 80 TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPG 139
Query: 497 -----------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV 537
+ + ++ + +EYL +S IH + E++V
Sbjct: 140 MEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL----ASQKCIHRDLAARNVLVTENNV 195
Query: 538 T-------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
T + +MAPE + + + + DV+S+GVL+ E FT
Sbjct: 196 MKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 254
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 49/181 (27%)
Query: 442 SSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---- 496
+ SE +VL + H N++ ++ +C+ ++ E+ G L +L
Sbjct: 66 HLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSF 125
Query: 497 -------------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------CE-GED 535
LD+ + L+ V + +L +S IH
Sbjct: 126 ICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFL----ASKNCIHRDLAARNILLTHG 181
Query: 536 SVT-------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576
+T + + +MAPE + + + DV+SYG+ L E F
Sbjct: 182 RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELF 241
Query: 577 T 577
+
Sbjct: 242 S 242
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 37/179 (20%), Positives = 61/179 (34%), Gaps = 54/179 (30%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH------------ 496
F E ++ + N++K++ C+ L+ E+M G L ++L S
Sbjct: 97 FQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSD 156
Query: 497 -----------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------C-EGEDSV 537
L E+L I V + + YL S +H C GE+ V
Sbjct: 157 LSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYL----SERKFVHRDLATRNCLVGENMV 212
Query: 538 -------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
I +M PE + + DV++YGV+L E F+
Sbjct: 213 VKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFS 271
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 42/169 (24%)
Query: 450 DSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
D E ++LR H N+I+ + + F+ + +E +L++++ ++ LE + +
Sbjct: 65 DREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITL 123
Query: 509 MIDVGSALEYLRHGHSSAPIIHC--------------------------------EGEDS 536
+ S L +L H + I+H G S
Sbjct: 124 LQQTTSGLAHL-HSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHS 179
Query: 537 VTQTTTMA-TIGYMAPEY---GSEGIVSAKCDVYSYGVLLMETFTRKRP 581
++ + + T G++APE + + D++S G + +
Sbjct: 180 FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSH 228
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 47/179 (26%)
Query: 442 SSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---- 496
+ SE E+++ + +H+N+I ++ +C+ +++E+ G+L ++L +
Sbjct: 114 TEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPG 173
Query: 497 -----------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV 537
L + ++ V +EYL +S IH + ED+V
Sbjct: 174 LEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL----ASKKCIHRDLAARNVLVTEDNV 229
Query: 538 T-------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
T + +MAPE + I + + DV+S+GVLL E FT
Sbjct: 230 MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 288
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 47/179 (26%)
Query: 442 SSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---- 496
+ SE E+++ + +H+N+I ++ +C+ +++E+ G+L ++L +
Sbjct: 126 TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPG 185
Query: 497 -----------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDSV 537
+ + ++ + +EYL +S IH + E++V
Sbjct: 186 MEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL----ASQKCIHRDLAARNVLVTENNV 241
Query: 538 -------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
T + +MAPE + + + + DV+S+GVL+ E FT
Sbjct: 242 MKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 300
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 44/171 (25%)
Query: 451 SECEVLRNVRHRNLIKI--ISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER--L 506
E EVL+ + H+N++K+ I + K L++EF P GSL L + + E L
Sbjct: 56 REFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFL 115
Query: 507 NIMIDVGSALEYLRHGHSSAPIIH----------CEGEDS--------------VTQTTT 542
++ DV + +L + I+H GED +
Sbjct: 116 IVLRDVVGGMNHL-RENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ 171
Query: 543 MATI----GYMAPEYGSEGIV--------SAKCDVYSYGVLLMETFTRKRP 581
++ Y+ P+ ++ A D++S GV T P
Sbjct: 172 FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLP 222
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 37/138 (26%)
Query: 479 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL-RHGHSSAPIIHCE----- 532
LV+E++ +L +++ SH L + +N + +++ I+H +
Sbjct: 88 LVMEYIEGPTLSEYIESHGP-LSVDTAINFTNQILDGIKHAHDMR-----IVHRDIKPQN 141
Query: 533 --------------------GEDSVTQT-TTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571
E S+TQT + T+ Y +PE D+YS G++
Sbjct: 142 ILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIV 201
Query: 572 LMETFTRKRPTDEMFTGE 589
L E + P F GE
Sbjct: 202 LYEMLVGEPP----FNGE 215
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 39/140 (27%)
Query: 479 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL-RHGHSSAPIIHC------ 531
+V+E++ +L +++ + + ++ D AL + ++G IIH
Sbjct: 93 IVMEYVDGVTLRDIVHTEGP-MTPKRAIEVIADACQALNFSHQNG-----IIHRDVKPAN 146
Query: 532 ---------------------EGEDSVTQT-TTMATIGYMAPEYGSEGIVSAKCDVYSYG 569
+ +SVTQT + T Y++PE V A+ DVYS G
Sbjct: 147 IMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLG 206
Query: 570 VLLMETFTRKRPTDEMFTGE 589
+L E T + P FTG+
Sbjct: 207 CVLYEVLTGEPP----FTGD 222
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 54/186 (29%)
Query: 442 SSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---- 496
S + SE +++ + H N++ ++ +C+ L+ E+ G L +L S
Sbjct: 88 DSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKF 147
Query: 497 ------------------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------C 531
L + L V +E+L +H
Sbjct: 148 SEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFL----EFKSCVHRDLAARNV 203
Query: 532 E-GEDSVT-------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571
V + + +MAPE EGI + K DV+SYG+L
Sbjct: 204 LVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGIL 263
Query: 572 LMETFT 577
L E F+
Sbjct: 264 LWEIFS 269
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 39/166 (23%)
Query: 451 SECEVLRNVRHRNLIKII------SSCSNPDFKALVLEFMPNGSLEKWLYSH--NYFLDI 502
E ++++ + H N++ + D L +E+ G L K+L L
Sbjct: 61 LEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKE 120
Query: 503 LERLNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDSV------------TQ 539
++ D+ SAL YL H + IIH + + Q
Sbjct: 121 GPIRTLLSDISSALRYL-HENR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQ 176
Query: 540 TTTMATI----GYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
Y+APE + + D +S+G L E T RP
Sbjct: 177 GELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRP 222
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 104/682 (15%), Positives = 189/682 (27%), Gaps = 209/682 (30%)
Query: 88 HGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLS 147
H H+ E G+ Y + + V + D + + + ++
Sbjct: 4 HHHMDFETGE------HQYQYKDI-------LSVFEDAFVDNFDCKD----VQDMPKSI- 45
Query: 148 RLEMLRAEFNIIGGTIPSRIGNLRKL---------------VNLGL-----WSCNLQGQI 187
+ + E + I + + +L V L + L I
Sbjct: 46 ---LSKEEIDHIIMS-KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPI 98
Query: 188 PTE-IGSLQNLKNLDLADNKLSGLIPPTI-FNISTMRILTLESNQLSGRLPSTIGHSLRN 245
TE + ++L +N+S R+ +L L LR
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQPY--LKLRQAL-----LELRP 149
Query: 246 IEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPN-----TFGNLRHLSVLNVM 300
+ + + GK T + + N + M
Sbjct: 150 AKNVLIDGVLGSGK--------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 301 MNNLTTE-----SSSADQWSFLSSLTNC--RNLSNLALASNPLGGILPQLIGNFSASLQN 353
+ L + +S +D S + + L L L S P L L+ L N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCL--LV------LLN 252
Query: 354 IY------AFELG------------FNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHD 395
+ AF L + L+ T I E
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-------S 305
Query: 396 LCHLERLNILNLSGNKL-----SGHIPPCLASL--TSLRE--------LHLGSNKLSSSI 440
L L L+ L + + P S+ S+R+ H+ +KL++ I
Sbjct: 306 LL----LKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 441 PSSLA------FRSFDSECEVLR-NVR-HRNLIKIISSCSNPDFKALVLEFMPNGSL-EK 491
SSL +R V + L+ +I +V+ + SL EK
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 492 WLYSHNYFL-DILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVTQTTTMATIGYMA 550
+ I L + ++ AL H S I+ Y
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYAL------HRS--IVDH----------------YNI 455
Query: 551 PE-YGSEGIVSAKCDVYSYGVL-----------LMETFT----------RK-RPTDEMFT 587
P+ + S+ ++ D Y Y + M F +K R +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 588 GEMSL----------RRWVKESLPH--RLSEVVDTNLVR-EEQAFSAKMDCLLSIMDLAL 634
S+ + ++ ++ P RL + L + EE +K LL I AL
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI---AL 572
Query: 635 DCCMESPDKRMHMTDAAAKLKK 656
+ +A ++++
Sbjct: 573 -----MAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 71/412 (17%), Positives = 121/412 (29%), Gaps = 133/412 (32%)
Query: 4 LNDLTTDQSSLLAFKAHAFDYRSAL---ANNWSISYPICSWA----GISC----GSRHQR 52
++ + + LL K Y + L N + + A +SC +R ++
Sbjct: 227 IHSIQAELRRLLKSK----PYENCLLVLLNVQN------AKAWNAFNLSCKILLTTRFKQ 276
Query: 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKE-LGQLRR---LRVMSLAY 108
VT L H +SLD P E L + R L
Sbjct: 277 VTDF------LSAATTTH-------ISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLPR 320
Query: 109 NKLSGSFP---SWIGVLSKLRILRLDY------NNFTGPIPNSLFNLSRLEMLRAEFNII 159
L+ + P S I + + D + T I +SL L E R F+ +
Sbjct: 321 EVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRL 378
Query: 160 G----GT-IPSRIGNLRKLVNLG-LWSCNLQGQIPTEIGSLQNLKNLDLA--DNKLSGLI 211
IP+ + L +W ++ + + L L K S +
Sbjct: 379 SVFPPSAHIPTIL--------LSLIW-FDVIKSDVMVV--VNKLHKYSLVEKQPKESTIS 427
Query: 212 PPTIF--------NISTMRILTLESNQLSGRLPST--------------IGHSLRNIE-- 247
P+I+ N + ++ + S IGH L+NIE
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 248 ---------YLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR----HL 294
+L + + K+ +N+ SG I NT L+ ++
Sbjct: 488 ERMTLFRMVFLDF---RFLEQ---------KIRHDSTAWNA-SGSILNTLQQLKFYKPYI 534
Query: 295 SVLNVMMNNLTTESSSADQWSFLSSL------TNCRNLSNLALASNPLGGIL 340
N+ E FL + + +L +AL I
Sbjct: 535 CD-----NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL-MAEDEAIF 580
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 34/165 (20%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
+ E + ++++H+N+++ + S S F + +E +P GSL L S L E+
Sbjct: 64 QPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQT 123
Query: 507 --NIMIDVGSALEYLRHGHSSAPIIHC------------EG-------------EDSVTQ 539
+ L+YL H + I+H G
Sbjct: 124 IGFYTKQILEGLKYL-HDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC 179
Query: 540 TTTMA-TIGYMAPE--YGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
T T T+ YMAPE D++S G ++E T K P
Sbjct: 180 TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPP 224
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 6e-09
Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 37/154 (24%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF-------LDILE 504
E +++ ++++ + +N D ++ E+M N S+ K+ + I
Sbjct: 93 ELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQV 152
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIH------------------------CEGEDSVTQT 540
I+ V ++ Y+ H+ I H D +
Sbjct: 153 IKCIIKSVLNSFSYI---HNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIK- 208
Query: 541 TTMATIGYMAPE--YGSEGIVSAKCDVYSYGVLL 572
+ T +M PE AK D++S G+ L
Sbjct: 209 GSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICL 242
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 45/206 (21%)
Query: 447 RSFDSECEVLRNVRHRNL--IKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILE 504
S+ +E L ++ + I++ + +V+E N L WL D E
Sbjct: 52 DSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSI-DPWE 109
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGEDSVT 538
R + ++ A+ + H H I+H SV
Sbjct: 110 RKSYWKNMLEAVHTI-HQHG---IVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVV 165
Query: 539 QTTTMATIGYMAPE-----------YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFT 587
+ + + T+ YM PE S+ +S K DV+S G +L K P ++
Sbjct: 166 KDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN 225
Query: 588 GEMSLRRWVKESLPHRLSEVVDTNLV 613
L + + ++ + +L
Sbjct: 226 QISKLHAIIDPNHEIEFPDIPEKDLQ 251
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 49/173 (28%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKA-------------LVLEFMPNGSLEKWLYSHN 497
SE +L ++ H+ +++ ++ + +E+ NG+L ++S N
Sbjct: 51 SEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSEN 110
Query: 498 YFLDILERLNIMIDVGSALEYL-------------------------------RHGHSSA 526
E + + AL Y+ ++ H S
Sbjct: 111 LNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSL 170
Query: 527 PIIHCEGEDSVTQTTTMAT-IG---YMAPE-YGSEGIVSAKCDVYSYGVLLME 574
I+ + ++ + + + IG Y+A E G + K D+YS G++ E
Sbjct: 171 DILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFE 223
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 45/174 (25%)
Query: 447 RSFDSECEVLRNVRHRNL--IKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILE 504
S+ +E L ++ + I++ + +V+E N L WL D E
Sbjct: 71 DSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECG-NIDLNSWLKKKKSI-DPWE 128
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGEDSVT 538
R + ++ A+ + H H I+H SV
Sbjct: 129 RKSYWKNMLEAVHTI-HQHG---IVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVV 184
Query: 539 QTTTMATIGYMAPE-----------YGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
+ + + T+ YM PE S+ +S K DV+S G +L K P
Sbjct: 185 KDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 238
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 45/206 (21%)
Query: 447 RSFDSECEVLRNVRHRNL--IKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILE 504
S+ +E L ++ + I++ + +V+E N L WL D E
Sbjct: 99 DSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSI-DPWE 156
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGEDSVT 538
R + ++ A+ + H H I+H SV
Sbjct: 157 RKSYWKNMLEAVHTI-HQHG---IVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVV 212
Query: 539 QTTTMATIGYMAPE-----------YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFT 587
+ + + + YM PE S+ +S K DV+S G +L K P ++
Sbjct: 213 KDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN 272
Query: 588 GEMSLRRWVKESLPHRLSEVVDTNLV 613
L + + ++ + +L
Sbjct: 273 QISKLHAIIDPNHEIEFPDIPEKDLQ 298
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 47/233 (20%), Positives = 79/233 (33%), Gaps = 66/233 (28%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKAL--VLEFMPNGSLEKWLYSH---NYFLDILER 505
SE +LR ++H N+++ + L V+E+ G L + +LD
Sbjct: 54 SEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFV 113
Query: 506 LNIMIDVGSALEYL-RHGHSSAPIIH----CE-----GEDSV-----------TQTTTMA 544
L +M + AL+ R ++H G+ +V T+ A
Sbjct: 114 LRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFA 173
Query: 545 -----TIGYMAPE------YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE--MS 591
T YM+PE Y K D++S G LL E P FT
Sbjct: 174 KTFVGTPYYMSPEQMNRMSYNE------KSDIWSLGCLLYELCALMPP----FTAFSQKE 223
Query: 592 LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
L ++E R+ +S +++ +++ M L L R
Sbjct: 224 LAGKIREGKFRRIPYR-----------YSDELNEIITRM-LNLK-----DYHR 259
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 23/198 (11%)
Query: 114 SFPSWIGVLSKLRILRLDYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK 172
FP ++ L + T N L ++ ++ ++ + G I L
Sbjct: 12 IFPD--DAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPN 64
Query: 173 LVNLGLWSCNLQGQIPTEIG---SLQNLKNLDLADNKLSGLIPPTIFN-ISTMRILTLES 228
+ L L L +I L NL L L N+L L P +F+ ++ ++ L L
Sbjct: 65 VRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVE 118
Query: 229 NQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNA-TKLIGLDLGFNSFSGHIPN- 286
NQL LP + L N+ YL L+ N L +P + + T L LDL +N +P
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQS-LPEG 175
Query: 287 TFGNLRHLSVLNVMMNNL 304
F L L L + N L
Sbjct: 176 VFDKLTQLKDLRLYQNQL 193
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 22/168 (13%)
Query: 273 LDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALA 332
+L S + T L + + +++ + + L N + LAL
Sbjct: 24 ANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKSVQG-------IQYLPN---VRYLALG 71
Query: 333 SNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYV 392
N L I L N+ L N L L L+ + EN LQ +
Sbjct: 72 GNKL-----HDISALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SL 124
Query: 393 PHDLC-HLERLNILNLSGNKLSGHIPPCL-ASLTSLRELHLGSNKLSS 438
P + L L LNL+ N+L +P + LT+L EL L N+L S
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQS 171
|
| >4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 44/164 (26%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIM 509
E VL N++H N+++ S +V+++ G L K + + + L+
Sbjct: 72 REVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWF 131
Query: 510 IDVGSALEYLRHGHSSAPIIH--------------------------CEGEDSVTQTTTM 543
+ + AL+++ H I+H + +
Sbjct: 132 VQICLALKHV-HDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACI- 186
Query: 544 ATIGYMAPE------YGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
T Y++PE Y + K D+++ G +L E T K
Sbjct: 187 GTPYYLSPEICENKPYNN------KSDIWALGCVLYELCTLKHA 224
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 16/151 (10%)
Query: 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLRN 245
+P I + N + L L DN+++ L P +F ++ ++ L L SNQL LP + SL
Sbjct: 34 VPAGIPT--NAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89
Query: 246 IEYLALSTNNLIGKIPNSITNA-TKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304
+ L L TN L +P+++ + L L + N + +P L HL+ L + N L
Sbjct: 90 LTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147
Query: 305 TTESSSADQWSFLSSLTNCRNLSNLALASNP 335
+ A + LSSLT + L NP
Sbjct: 148 KSIPHGA--FDRLSSLT------HAYLFGNP 170
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 102 RVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFN-LSRLEMLRAEFNIIG 160
+++ L N+++ P L L+ L L N +P +F+ L++L +L N +
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQL- 100
Query: 161 GTIPSRI-GNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NI 218
+PS + L L L + L +P I L +L +L L N+L IP F +
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKS-IPHGAFDRL 158
Query: 219 STMRILTLESNQ 230
S++ L N
Sbjct: 159 SSLTHAYLFGNP 170
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 358 ELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSGHI 416
L N + P +L L+ Y+ N L +P + L +L +L+L N+L+ +
Sbjct: 46 YLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTV-L 103
Query: 417 PP-CLASLTSLRELHLGSNKLSSSIP 441
P L L+EL + NKL + +P
Sbjct: 104 PSAVFDRLVHLKELFMCCNKL-TELP 128
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 36/163 (22%)
Query: 450 DSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIM 509
E + ++ + + + + +E + GSL + + + +
Sbjct: 98 VEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRAL-YYL 156
Query: 510 IDVGSALEYLRHGHSSAPIIHC------------------------------EGEDSVTQ 539
LEYL H+ I+H S+
Sbjct: 157 GQALEGLEYL---HTRR-ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLT 212
Query: 540 TTTMA-TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
+ T +MAPE AK D++S +++ P
Sbjct: 213 GDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHP 255
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 32/159 (20%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLN 507
E ++L+ + H N+IK +S + +VLE G L + + +
Sbjct: 81 KEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWK 140
Query: 508 IMIDVGSALEYLRHGHSSAPIIHC---------EGEDSV-----------TQTTTMAT-- 545
+ + SALE++ H ++H V + TT A
Sbjct: 141 YFVQLCSALEHM-HSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSL 196
Query: 546 IG---YMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
+G YM+PE E + K D++S G LL E + P
Sbjct: 197 VGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSP 235
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 22/158 (13%)
Query: 181 CNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIG 240
+ + TE ++ L + + T+ + + L L +N + I
Sbjct: 15 EERKSVVATEAEKVE----LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-----KIS 64
Query: 241 H--SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLN 298
+ N+ L+L NLI KI N A L L + +N + + L +L VL
Sbjct: 65 SLSGMENLRILSLG-RNLIKKIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLY 121
Query: 299 VMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
+ N +T W + L L +L LA NPL
Sbjct: 122 MSNNKITN-------WGEIDKLAALDKLEDLLLAGNPL 152
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 217 NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLG 276
N R L L ++ + +G +L + + S +N I K+ +L L +
Sbjct: 17 NAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFS-DNEIRKLDG-FPLLRRLKTLLVN 72
Query: 277 FNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
N L L+ L + N+L + L L + ++L+ L + NP+
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSL-------VELGDLDPLASLKSLTYLCILRNPV 125
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 318 SSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQ 377
+ TN L L + +I N A+L A + N++ + L++
Sbjct: 13 AQYTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRR 65
Query: 378 LQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS--GHIPPCLASLTSLRELHLGSN 434
L+ V N + L L L L+ N L G + P LASL SL L + N
Sbjct: 66 LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 57/181 (31%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKA----------------LVLEFMPNGSLEKWLYS 495
E + L + H N++ D+ + +EF G+LE+W+
Sbjct: 54 EVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEK 113
Query: 496 HN-YFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-----------CEG---------- 533
LD + L + + ++Y+ H +I+
Sbjct: 114 RRGEKLDKVLALELFEQITKGVDYI-HSKK---LINRDLKPSNIFLVDTKQVKIGDFGLV 169
Query: 534 ---EDSVTQTTTMATIGYMAPE------YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584
++ +T + T+ YM+PE YG + D+Y+ G++L E E
Sbjct: 170 TSLKNDGKRTRSKGTLRYMSPEQISSQDYGK------EVDLYALGLILAELLHVCDTAFE 223
Query: 585 M 585
Sbjct: 224 T 224
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 38/271 (14%), Positives = 90/271 (33%), Gaps = 47/271 (17%)
Query: 197 LKNLDLADNKLSG----LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLR---NIEYL 249
++ L + ++ + + +++ + L N + + ++ ++E
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 250 ALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESS 309
S + G++ + I A +L+ L L + + N +
Sbjct: 66 EFS-DIFTGRVKDEIPEALRLLLQALLKCP-------------KLHTVRLSDNAFGPTAQ 111
Query: 310 SADQWSFLSSLTNCRNLSNLALASNPLG---------GILPQLIGNFSASLQNIYAFELG 360
+ L+ L +L L +N LG + + + + + + G
Sbjct: 112 EP----LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167
Query: 361 FNDLNG----TIPTSIGTLQQLQGFYVPENNL-----QGYVPHDLCHLERLNILNLSGNK 411
N L + + + L + +N + + + L + + L +L+L N
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227
Query: 412 LSG----HIPPCLASLTSLRELHLGSNKLSS 438
+ + L S +LREL L LS+
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSA 258
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 57/345 (16%), Positives = 100/345 (28%), Gaps = 66/345 (19%)
Query: 125 LRILRLDYNNFTG----PIPNSLFNLSRLEMLRAEFNIIGGT----IPSRIGNLRKLVNL 176
+ L + T + L ++ + N IG + I + + L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 177 GLWSCNLQGQIPTEIGS-----------LQNLKNLDLADNKLSG----LIPPTIFNISTM 221
+S G++ EI L + L+DN + + + +
Sbjct: 66 -EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 222 RILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS 281
L L +N L + + I +L+ + + N L + G N
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA------------PPLRSIICGRNRLE 172
Query: 282 G----HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG 337
TF + R L + ++ N + E L L C+ L L L N
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH---LLLEGLAYCQELKVLDLQDNTFT 229
Query: 338 GILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC 397
+ + S N+ L L ++ G + F EN
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLL-----SARGAAAVVDAFSKLEN----------- 273
Query: 398 HLERLNILNLSGNKLSGHIPPCLAS-----LTSLRELHLGSNKLS 437
L L L N++ L + + L L L N+ S
Sbjct: 274 --IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 38/262 (14%), Positives = 73/262 (27%), Gaps = 56/262 (21%)
Query: 48 SRHQRVTALNLSDMGLGGTIPLHFGNLSF----------LVSLDISENNF--HG--HLPK 93
+ + + SD+ G L L ++ +S+N F L
Sbjct: 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116
Query: 94 ELGQLRRLRVMSLAYNKLS-------------GSFPSWIGVLSKLRILRLDYNNFTGP-- 138
L + L + L N L + LR + N
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176
Query: 139 --IPNSLFNLSRLEMLRAEFNIIG-----GTIPSRIGNLRKLVNLGLWSCNLQGQ----I 187
+ + L ++ N I + + ++L L L +
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236
Query: 188 PTEIGSLQNLKNLDLADNKL---------SGLIPPTIFNISTMRILTLESNQLSGR---- 234
+ S NL+ L L D L + ++ L L+ N++
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAF---SKLENIGLQTLRLQYNEIELDAVRT 293
Query: 235 LPSTIGHSLRNIEYLALSTNNL 256
L + I + ++ +L L+ N
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRF 315
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 59/165 (35%)
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER-- 505
+ E E+L+ + H N++K+ + +V E G L F +I++R
Sbjct: 67 TILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGEL---------FDEIIKRKR 117
Query: 506 ------LNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDS------------ 536
I+ V S + Y+ H H+ I+H + +D
Sbjct: 118 FSEHDAARIIKQVFSGITYM-HKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173
Query: 537 VTQTTTMATI----GYMAPE-----YGSEGIVSAKCDVYSYGVLL 572
Q T M Y+APE Y + CDV+S GV+L
Sbjct: 174 FQQNTKMKDRIGTAYYIAPEVLRGTYDEK------CDVWSAGVIL 212
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 32/226 (14%), Positives = 66/226 (29%), Gaps = 43/226 (19%)
Query: 399 LERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEVLRN 458
L +L + + P + E+ L + S + + +
Sbjct: 58 LAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDP 117
Query: 459 VRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDVGSAL 516
+N + + S + + ++ +L+ W+ + L+I I + A+
Sbjct: 118 FSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAV 177
Query: 517 EYLRHGHSSAPIIH------------------------CEGEDSVTQTTTMA-------- 544
E+L H ++H + + T +
Sbjct: 178 EFL-HSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATH 233
Query: 545 -----TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585
T YM+PE S K D++S G++L E E
Sbjct: 234 TGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER 279
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 52/163 (31%)
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL- 506
+ ++E E+L+ + H +IKI + D+ +VLE M G L + + E
Sbjct: 186 NVETEIEILKKLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGNKRL---KEATC 241
Query: 507 -NIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDS------------VTQTTT 542
+ A++YL H + IIH + ED + +T+
Sbjct: 242 KLYFYQMLLAVQYL-HENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL 297
Query: 543 MATI----GYMAPE---------YGSEGIVSAKCDVYSYGVLL 572
M T+ Y+APE Y D +S GV+L
Sbjct: 298 MRTLCGTPTYLAPEVLVSVGTAGYNRA------VDCWSLGVIL 334
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 5e-07
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 242 SLRNIEYLALSTNNLIGKIPN-SITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVM 300
N+ L + + + + +L L + + P+ F LS LN+
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 301 MNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
N L + W + L +L L L+ NPL
Sbjct: 89 FNALESL-----SWKTVQGL----SLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 9e-06
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 26/124 (20%)
Query: 109 NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIG 168
+ + L L ++ +
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDL-----------------------R 53
Query: 169 NLRKLVNLGLWSCNLQGQIPTEIGS-LQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227
L +L NL + L+ + + L L+L+ N L L +++ L L
Sbjct: 54 GLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLSLQELVLS 111
Query: 228 SNQL 231
N L
Sbjct: 112 GNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 362 NDLNGTIPTSIGTLQQLQGFYVPENNLQGYVP-HDLCHLERLNILNLSGNKLSGHIPP-C 419
D + + L Y+ ++ DL L L L + + L + P
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75
Query: 420 LASLTSLRELHLGSNKLSS 438
L L+L N L S
Sbjct: 76 FHFTPRLSRLNLSFNALES 94
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 10/92 (10%)
Query: 66 TIPLHFGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLAYNKLS----GSFPSWIG 120
H L L I HL L L LR +++ + L +F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF--- 78
Query: 121 VLSKLRILRLDYNNFTGPIPNSLFNLSRLEML 152
+L L L +N + L+ L
Sbjct: 79 -TPRLSRLNLSFNALES-LSWKTVQGLSLQEL 108
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 162 TIPSRIGNLRKLVNLGLWSCNLQGQIPTE-IGSLQNLKNLDLADNKLSGLIPPTIF-NIS 219
+ L L + + + + L L+NL + + L + P F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 220 TMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNL 256
+ L L N L L L +++ L LS N L
Sbjct: 81 RLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPL 115
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 6e-07
Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 20/196 (10%)
Query: 243 LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMN 302
+ + L + + +L +L S + + + + L L
Sbjct: 325 SDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVEK-STVLQSELESCKELQEL----- 377
Query: 303 NLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFN 362
++W L+ + R L L L + + +
Sbjct: 378 ------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM----RAAYLDDLRS 427
Query: 363 DLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLAS 422
++ ++ +L V L L + L+LS N+L +PP LA+
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAA 484
Query: 423 LTSLRELHLGSNKLSS 438
L L L N L +
Sbjct: 485 LRCLEVLQASDNALEN 500
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 6e-07
Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 16/205 (7%)
Query: 69 LHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRIL 128
L L + L + L L + ++ L P L LR
Sbjct: 369 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428
Query: 129 RLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP 188
L N + + +L + T+ + L + +L L S N +P
Sbjct: 429 FLLEN------SVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDL-SHNRLRALP 479
Query: 189 TEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGH--SLRNI 246
+ +L+ L+ L +DN L + + N+ ++ L L +N+L + I S +
Sbjct: 480 PALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQ--SAAIQPLVSCPRL 535
Query: 247 EYLALSTNNLIGKIPNSITNATKLI 271
L L N + + +++
Sbjct: 536 VLLNLQ-GNSLCQEEGIQERLAEML 559
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 7e-04
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
VT L+LS L +P L L L S+N ++ + L RL+ + L N+
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNR 519
Query: 111 LSGSFPS--WIGVLSKLRILRLDYNNFT 136
L + + +L +L L N+
Sbjct: 520 LQ-QSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 45/215 (20%), Positives = 72/215 (33%), Gaps = 41/215 (19%)
Query: 465 IKIISSCSNP---DFKA---------LVLEFMPNGSLEKWLYSHNYFL-DILERLNIMID 511
++++ C++P F + +E M GSL++ L IL + + I
Sbjct: 82 LQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGK--VSIA 139
Query: 512 VGSALEYLRHGHSSAPIIH-----------CEGE----D---SVTQTTTMA-----TIGY 548
V L YL I+H GE D S +MA T Y
Sbjct: 140 VIKGLTYL---REKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSY 196
Query: 549 MAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVV 608
M+PE S + D++S G+ L+E + P E+ L + +
Sbjct: 197 MSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPR 256
Query: 609 DTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643
R F ++I +L E P K
Sbjct: 257 PRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPK 291
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 60/162 (37%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER------ 505
E + R ++H N++++ S F LV + + G L F DI+ R
Sbjct: 55 EARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL---------FEDIVAREFYSEA 105
Query: 506 --LNIMIDVGSALEYLRHGHSSAPIIHC-----------EGEDS------------VTQT 540
+ + + ++ Y H + I+H + + + V +
Sbjct: 106 DASHCIQQILESIAYC-HSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS 161
Query: 541 TTMATI----GYMAPE------YGSEGIVSAKCDVYSYGVLL 572
GY++PE Y D+++ GV+L
Sbjct: 162 EAWHGFAGTPGYLSPEVLKKDPYSKP------VDIWACGVIL 197
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 28/146 (19%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511
E E+ ++RH N++++ + L+LE+ P G++ + L + F + + +
Sbjct: 59 EVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA-TYITE 117
Query: 512 VGSALEYLRHGHSSAPIIH-----------CEGE------------DSVTQTTTMATIGY 548
+ +AL Y H +IH GE S +T T+ Y
Sbjct: 118 LANALSYC-HSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDY 173
Query: 549 MAPEYGSEGIVSAKCDVYSYGVLLME 574
+ PE + K D++S GVL E
Sbjct: 174 LPPEMIEGRMHDEKVDLWSLGVLCYE 199
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 59/165 (35%)
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER-- 505
S ++E VL+ ++H N++ + + LV++ + G L F ILER
Sbjct: 52 SLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGEL---------FDRILERGV 102
Query: 506 ------LNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDS-----------V 537
++ V SA++YL H + I+H E+S +
Sbjct: 103 YTEKDASLVIQQVLSAVKYL-HENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKM 158
Query: 538 TQTTTMATI----GYMAPE------YGSEGIVSAKCDVYSYGVLL 572
Q M+T GY+APE Y D +S GV+
Sbjct: 159 EQNGIMSTACGTPGYVAPEVLAQKPYSKA------VDCWSIGVIT 197
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 60/175 (34%)
Query: 439 SIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY 498
+ ++ + +E VL + H N+IK+ P +LVLE + G L
Sbjct: 85 VLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGEL--------- 135
Query: 499 FLDILER--------LNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDS--- 536
F I+E+ + + + A+ YL H + I+H D+
Sbjct: 136 FDRIVEKGYYSERDAADAVKQILEAVAYL-HENG---IVHRDLKPENLLYATPAPDAPLK 191
Query: 537 ---------VTQTTTMATI----GYMAPE------YGSEGIVSAKCDVYSYGVLL 572
V M T+ GY APE YG E D++S G++
Sbjct: 192 IADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPE------VDMWSVGIIT 240
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 60/162 (37%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER------ 505
E + R ++H N++++ S F LV + + G L F DI+ R
Sbjct: 78 EARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL---------FEDIVAREFYSEA 128
Query: 506 --LNIMIDVGSALEYLRHGHSSAPIIHC-----------EGEDS------------VTQT 540
+ + + ++ Y H + I+H + + + V +
Sbjct: 129 DASHCIQQILESIAYC-HSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS 184
Query: 541 TTMATI----GYMAPE------YGSEGIVSAKCDVYSYGVLL 572
GY++PE Y D+++ GV+L
Sbjct: 185 EAWHGFAGTPGYLSPEVLKKDPYSKP------VDIWACGVIL 220
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 44/288 (15%), Positives = 83/288 (28%), Gaps = 95/288 (32%)
Query: 446 FRSFDSECEVLR-NVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILE 504
E ++L + H N+I+ S + F + LE N +L+ + S N + L+
Sbjct: 52 CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC-NLNLQDLVESKNVSDENLK 110
Query: 505 RL------NIMIDVGSALEYLRHGHSSAPIIHC--------------------------- 531
+++ + S + +L H IIH
Sbjct: 111 LQKEYNPISLLRQIASGVAHL-HSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLR 166
Query: 532 -----------EGEDSVTQTTTMATI----GYMAPE-------YGSEGIVSAKCDVYSYG 569
+ T + G+ APE ++ ++ D++S G
Sbjct: 167 ILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMG 226
Query: 570 VLLMETFTRKRP--------TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSA 621
+ ++ + + G SL ++E D L+
Sbjct: 227 CVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATD--LIS------- 277
Query: 622 KMDCLLSIMDLALDCCMESPDKRMHMTDAAA----KLKKIKVKFLDDV 665
+M + D P KR K K++FL V
Sbjct: 278 QM--------IDHD-----PLKRPTAMKVLRHPLFWPKSKKLEFLLKV 312
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 59/165 (35%)
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER-- 505
F E E+++++ H N+I++ + + LV+E G L F ++ +
Sbjct: 52 RFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGEL---------FERVVHKRV 102
Query: 506 ------LNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDS------------ 536
IM DV SA+ Y H + + H + DS
Sbjct: 103 FRESDAARIMKDVLSAVAYC-HKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFGLAAR 158
Query: 537 VTQTTTMATI----GYMAPE-----YGSEGIVSAKCDVYSYGVLL 572
M T Y++P+ YG E CD +S GV++
Sbjct: 159 FKPGKMMRTKVGTPYYVSPQVLEGLYGPE------CDEWSAGVMM 197
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 57/161 (35%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER------ 505
E + R ++H N++++ S S L+ + + G L F DI+ R
Sbjct: 60 EARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGEL---------FEDIVAREYYSEA 110
Query: 506 --LNIMIDVGSALEYLRHGH------------------SSAPI--------IHCEGEDSV 537
+ + + A+ + H A + I EGE
Sbjct: 111 DASHCIQQILEAVLHC-HQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA 169
Query: 538 TQTTTMATIGYMAPE------YGSEGIVSAKCDVYSYGVLL 572
T GY++PE YG D+++ GV+L
Sbjct: 170 W-FGFAGTPGYLSPEVLRKDPYGKP------VDLWACGVIL 203
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 47/169 (27%)
Query: 438 SSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN 497
+ S E ++L+ + H N++K+ + + LV E G L + S
Sbjct: 62 RQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK 121
Query: 498 YFLDILERL--NIMIDVGSALEYLRHGHSSAPIIH------------------------- 530
F E I+ V S + Y+ H + I+H
Sbjct: 122 RF---SEVDAARIIRQVLSGITYM-HKNK---IVHRDLKPENLLLESKSKDANIRIIDFG 174
Query: 531 --CEGEDSVTQTTTMATIGYMAPE-----YGSEGIVSAKCDVYSYGVLL 572
E S + T Y+APE Y KCDV+S GV+L
Sbjct: 175 LSTHFEASKKMKDKIGTAYYIAPEVLHGTYDE------KCDVWSTGVIL 217
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 30/147 (20%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511
E + + +RH L+ + + + + ++ EFM G L + + + + E + M
Sbjct: 204 EIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQ 263
Query: 512 VGSALEYLRHGHSSAPIIH-----------CEGEDSV---------------TQTTTMAT 545
V L ++ H ++ +H + + + + T T
Sbjct: 264 VCKGLCHM-HENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGT 319
Query: 546 IGYMAPEYGSEGIVSAKCDVYSYGVLL 572
+ APE V D++S GVL
Sbjct: 320 AEFAAPEVAEGKPVGYYTDMWSVGVLS 346
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 52/163 (31%)
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL- 506
+ ++E E+L+ + H +IKI + D+ +VLE M G L + + E
Sbjct: 61 NVETEIEILKKLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGNKRL---KEATC 116
Query: 507 -NIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDS------------VTQTTT 542
+ A++YL H + IIH + ED + +T+
Sbjct: 117 KLYFYQMLLAVQYL-HENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL 172
Query: 543 MATI----GYMAPE---------YGSEGIVSAKCDVYSYGVLL 572
M T+ Y+APE Y D +S GV+L
Sbjct: 173 MRTLCGTPTYLAPEVLVSVGTAGYNRA------VDCWSLGVIL 209
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 23/195 (11%), Positives = 44/195 (22%), Gaps = 46/195 (23%)
Query: 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSL----EKWLYSHNYFLD 501
F E L+ +K S+ + LV E G+L + + +
Sbjct: 111 FYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMP 170
Query: 502 ILERLNIMIDVGSALEYLRHGHSSAPIIHC------------------------------ 531
++ + + +E + H IIH
Sbjct: 171 QGLVISFAMRMLYMIEQV---HDCE-IIHGDIKPDNFILGNGFLEQDDEDDLSAGLALID 226
Query: 532 --------EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583
T T G+ E S + + D + +
Sbjct: 227 LGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKV 286
Query: 584 EMFTGEMSLRRWVKE 598
+ GE +
Sbjct: 287 KNEGGECKPEGLFRR 301
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 67/184 (36%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
K +SS L+ E + ++H ++++++ + S+ +V EFM L
Sbjct: 61 KFTSS--PGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADL----- 113
Query: 495 SHNYFLDILERLN------------IMIDVGSALEYLRHGHSSAPIIHCE---------- 532
+I++R + M + AL Y H ++ IIH +
Sbjct: 114 ----CFEIVKRADAGFVYSEAVASHYMRQILEALRYC-HDNN---IIHRDVKPHCVLLAS 165
Query: 533 ------------------GEDSVTQTTTMATIGYMAPE------YGSEGIVSAKCDVYSY 568
GE + + T +MAPE YG DV+
Sbjct: 166 KENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKP------VDVWGC 219
Query: 569 GVLL 572
GV+L
Sbjct: 220 GVIL 223
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 40/152 (26%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511
E E+ ++RH N++++ + + L+LEF P G L K L H F + M +
Sbjct: 64 EIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSA-TFMEE 122
Query: 512 VGSALEYLRHGHSSAPIIH-----------CEGE------------DSVTQTTTMATIGY 548
+ AL Y H +IH +GE S+ + T T+ Y
Sbjct: 123 LADALHYC-HERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDY 178
Query: 549 MAPE------YGSEGIVSAKCDVYSYGVLLME 574
+ PE + K D++ GVL E
Sbjct: 179 LPPEMIEGKTHD------EKVDLWCAGVLCYE 204
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 40/173 (23%), Positives = 58/173 (33%), Gaps = 51/173 (29%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER--LNI 508
E VL+ + H N++K+ + LV+E G L + F E I
Sbjct: 85 EEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKF---NEVDAAVI 141
Query: 509 MIDVGSALEYLRHGHSSAPIIH---------------------------CEGEDSVTQTT 541
+ V S + YL H H+ I+H E+
Sbjct: 142 IKQVLSGVTYL-HKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKE 197
Query: 542 TMATIGYMAPE-----YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589
+ T Y+APE Y KCDV+S GV+L P F G+
Sbjct: 198 RLGTAYYIAPEVLRKKYDE------KCDVWSIGVILFILLAGYPP----FGGQ 240
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLR 244
+P E+ + ++L +DL++N++S L F N++ + L L N+L +P L+
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLK 102
Query: 245 NIEYLALSTNNLIGKIPNSI-TNATKLIGLDLGFN 278
++ L+L N++ +P + + L L +G N
Sbjct: 103 SLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 358 ELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIP 417
L N +P + + L + N + ++ +L L LS N+L IP
Sbjct: 37 YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IP 94
Query: 418 P-CLASLTSLRELHLGSNKLSSSIP 441
P L SLR L L N + S +P
Sbjct: 95 PRTFDGLKSLRLLSLHGNDI-SVVP 118
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 49/157 (31%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER------ 505
E +LR V H N+I + N L+LE + G L F + ++
Sbjct: 65 EVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGEL---------FDFLAQKESLSEE 115
Query: 506 --LNIMIDVGSALEYLRHGHSSAPIIH----------------------------CEGED 535
+ + + + YL H I H E ED
Sbjct: 116 EATSFIKQILDGVNYL-HTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171
Query: 536 SVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLL 572
V T ++APE + + + D++S GV+
Sbjct: 172 GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT 208
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 47/156 (30%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER--LNI 508
+E +L+++ H N+IK+ + + LV EF G L + + + + F E NI
Sbjct: 95 NEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFD---ECDAANI 151
Query: 509 MIDVGSALEYLRHGHSSAPIIH---------------------------CEGEDSVTQTT 541
M + S + YL H H+ I+H
Sbjct: 152 MKQILSGICYL-HKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRD 207
Query: 542 TMATIGYMAPE-----YGSEGIVSAKCDVYSYGVLL 572
+ T Y+APE Y KCDV+S GV++
Sbjct: 208 RLGTAYYIAPEVLKKKYNE------KCDVWSCGVIM 237
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 65/166 (39%)
Query: 452 ECEVL-RNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLN--- 507
E E+L R +H N+I + + + +V E M G L IL +
Sbjct: 65 EIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGEL---------LDKILRQKFFSE 115
Query: 508 -----IMIDVGSALEYLRHGHSSAPIIH------------------------------CE 532
++ + +EYL H ++H
Sbjct: 116 REASAVLFTITKTVEYL-HAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR 171
Query: 533 GEDSVTQTTTMATIGYMAPE------YGSEGIVSAKCDVYSYGVLL 572
E+ + T T ++APE Y + CD++S GVLL
Sbjct: 172 AENGLL-MTPCYTANFVAPEVLERQGYDAA------CDIWSLGVLL 210
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 7e-06
Identities = 24/201 (11%), Positives = 63/201 (31%), Gaps = 50/201 (24%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFM----PNGSLEKWLYSH---NYFLD 501
F +++++ + + +I++ + + + + + L SH + L
Sbjct: 145 FIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLV 204
Query: 502 ILERLNIMIDVGSALEYLRHGHSSAPIIHC-----------EGE----------DSVTQT 540
RL + + V L L H + ++H G +
Sbjct: 205 HHARLQLTLQVIRLLASL-HHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARV 260
Query: 541 TTMATIGYMAPEY-----------GSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGE 589
+ + G+ PE +++ D ++ G+++ + P T +
Sbjct: 261 VSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP----ITKD 316
Query: 590 --MSLRRWVKESLPHRLSEVV 608
+ W+ S + + V
Sbjct: 317 AALGGSEWIFRS-CKNIPQPV 336
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 30/147 (20%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511
E ++ + H LI + + + L+LEF+ G L + + +Y + E +N M
Sbjct: 98 EISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQ 157
Query: 512 VGSALEYLRHGHSSAPIIH---------CEGEDS-----------------VTQTTTMAT 545
L+++ H HS I+H CE + + T AT
Sbjct: 158 ACEGLKHM-HEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTAT 213
Query: 546 IGYMAPEYGSEGIVSAKCDVYSYGVLL 572
+ APE V D+++ GVL
Sbjct: 214 AEFAAPEIVDREPVGFYTDMWAIGVLG 240
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 46/155 (29%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSL------EKWLYSHNYFLDILER 505
E V+ + H NLI++ + + + LV+E++ G L E + + E
Sbjct: 136 EISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLT--------EL 187
Query: 506 --LNIMIDVGSALEYLRHGHSSAPIIH---------CEGEDS-------------VTQTT 541
+ M + + ++ H I+H C D+
Sbjct: 188 DTILFMKQICEGIRHM-HQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE 243
Query: 542 TMATI----GYMAPEYGSEGIVSAKCDVYSYGVLL 572
+ ++APE + VS D++S GV+
Sbjct: 244 KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIA 278
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 9e-06
Identities = 26/211 (12%), Positives = 65/211 (30%), Gaps = 50/211 (23%)
Query: 444 LAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFM-PNGSLE---KWLYSH--- 496
F +++++ + + +I++ + + + +L+ + L SH
Sbjct: 145 KVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSST 204
Query: 497 NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC------------------------- 531
+ L RL + + V L L H + ++H
Sbjct: 205 HKSLVHHARLQLTLQVIRLLASL-HHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVR 260
Query: 532 EGEDSVTQTTT-MATIGYMAPE-----YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585
+G +V+ A A +++ D ++ G+ + + P
Sbjct: 261 DGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLP---- 316
Query: 586 FTGE--MSLRRWVKESLPHRLSEVVDTNLVR 614
T + + W+ S + + V L+
Sbjct: 317 NTDDAALGGSEWIFRS-CKNIPQPVR-ALLE 345
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 9e-06
Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 47/156 (30%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSL-----EKWLYSHNYFLDILER- 505
E +LR V H N+I + N L+LE + G L +K S E
Sbjct: 65 EVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLS--------EEE 116
Query: 506 -LNIMIDVGSALEYLRHGHSSAPIIH----------------------------CEGEDS 536
+ + + + YL H I H E ED
Sbjct: 117 ATSFIKQILDGVNYL-HTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDG 172
Query: 537 VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLL 572
V T ++APE + + + D++S GV+
Sbjct: 173 VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT 208
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 9e-06
Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 21/177 (11%)
Query: 87 FHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-- 144
L L + L + + + S L+ L + + +
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGT-NNLSIGKK--PRPNLKSLEIISGGLPDSVVEDILGS 216
Query: 145 ---NLSRLEMLRAEFNIIGGTIPSRI------GNLRKLVNLGLWSCNLQGQIPTEIGS-- 193
NL +L + + + L LG+ Q +
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276
Query: 194 -LQNLKNLDLADNKLSG----LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN 245
L L+ +D++ L+ L+ + I ++ + ++ N LS + + SL
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPM 333
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 4e-04
Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 19/161 (11%)
Query: 301 MNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELG 360
M L + NL +L + S L + + I + L N+ L
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRP-NLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLY 227
Query: 361 FNDLNGTIPTSIGTLQ---------QLQGFYVPENNLQGYVPHDLCH---LERLNILNLS 408
+ + + L+ + + Q V L +L +++S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287
Query: 409 GNKLSG----HIPPCLASLTSLRELHLGSNKLSSSIPSSLA 445
L+ + + + L+ +++ N LS + L
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 4e-04
Identities = 37/259 (14%), Positives = 70/259 (27%), Gaps = 59/259 (22%)
Query: 85 NNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF 144
++ + + + + SWI + L
Sbjct: 125 SDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ---------------VDLSPVLD 169
Query: 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGS--LQNLKNLDL 202
+ L L+ + NL+ L + S L + +I L NL+ L L
Sbjct: 170 AMPLLNNLKIKGTNNLSIGKKPRPNLKSLE---IISGGLPDSVVEDILGSDLPNLEKLVL 226
Query: 203 ADN-----------KLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHS--LRNIEYL 249
L F ++ L + + + S L +E +
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRF--PNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284
Query: 250 ALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESS 309
+S L D G H+ ++HL +N+ N L+ E
Sbjct: 285 DISAGVL----------------TDEGARLLLDHVDK----IKHLKFINMKYNYLSDEM- 323
Query: 310 SADQWSFLSSLTNCRNLSN 328
+ SL ++S+
Sbjct: 324 ---KKELQKSLPMKIDVSD 339
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-06
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 15/151 (9%)
Query: 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNI 246
+PT I + LDL N L L ++++ L L N+L LP+ + + L ++
Sbjct: 22 VPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78
Query: 247 EYLALSTNNLIGKIPNSITNA-TKLIGLDLGFNSFSGHIPN-TFGNLRHLSVLNVMMNNL 304
YL LSTN L +PN + + T+L L L N +P+ F L L L + N L
Sbjct: 79 TYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQL 136
Query: 305 TTESSSADQWSFLSSLTNCRNLSNLALASNP 335
+ + L+SL + L NP
Sbjct: 137 KSVPDGV--FDRLTSLQ------YIWLHDNP 159
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 358 ELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSGHI 416
+L N L L L Y+ N LQ +P+ + L L LNLS N+L +
Sbjct: 34 DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQS-L 91
Query: 417 PP-CLASLTSLRELHLGSNKLSSSIPS 442
P LT L+EL L +N+L S+P
Sbjct: 92 PNGVFDKLTQLKELALNTNQL-QSLPD 117
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 29/155 (18%)
Query: 102 RVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG 161
+ L N L L+ L L L N +PN +FN
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFN---------------- 73
Query: 162 TIPSRIGNLRKLVNLGLWSCNLQGQIPTEI-GSLQNLKNLDLADNKLSGLIPPTIFNIST 220
L L L L + LQ +P + L LK L L N+L L P +F+ T
Sbjct: 74 -------KLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSL-PDGVFDKLT 124
Query: 221 -MRILTLESNQLSGRLPSTIGHSLRNIEYLALSTN 254
++ L L NQL +P + L +++Y+ L N
Sbjct: 125 QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 56/167 (33%)
Query: 452 ECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLN--- 507
E E+L + HRN++++I D LV E M GS+ I +R +
Sbjct: 60 EVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSI---------LSHIHKRRHFNE 110
Query: 508 -----IMIDVGSALEYLRHGH------------------SSAPI----------IHCEGE 534
++ DV SAL++L H +P+ I G+
Sbjct: 111 LEASVVVQDVASALDFL-HNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGD 169
Query: 535 DSVTQTTTMATI----GYMAPE-----YGSEGIVSAKCDVYSYGVLL 572
S T + T YMAPE I +CD++S GV+L
Sbjct: 170 CSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVIL 216
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 47/156 (30%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER--LNI 508
E E+L+ + H N++K+ + +V E G L + F E I
Sbjct: 70 REVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRF---SEHDAARI 126
Query: 509 MIDVGSALEYLRHGHSSAPIIH---------------------------CEGEDSVTQTT 541
+ V S + Y+ H H+ I+H + +
Sbjct: 127 IKQVFSGITYM-HKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKD 182
Query: 542 TMATIGYMAPE-----YGSEGIVSAKCDVYSYGVLL 572
+ T Y+APE Y KCDV+S GV+L
Sbjct: 183 RIGTAYYIAPEVLRGTYDE------KCDVWSAGVIL 212
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 53/164 (32%)
Query: 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSL-----EKWLYSHNYFLDI 502
++E EVL+++ H N+IKI + +V+E G L
Sbjct: 66 QIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKAL---- 121
Query: 503 LER--LNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDS------------V 537
E +M + +AL Y H ++H S
Sbjct: 122 SEGYVAELMKQMMNALAYF-HSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177
Query: 538 TQTTTMATI----GYMAPE-----YGSEGIVSAKCDVYSYGVLL 572
YMAPE + CD++S GV++
Sbjct: 178 KSDEHSTNAAGTALYMAPEVFKRDVTFK------CDIWSAGVVM 215
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 33/188 (17%), Positives = 54/188 (28%), Gaps = 47/188 (25%)
Query: 452 ECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMI 510
E V +H +++ + L E SL++ + L + +
Sbjct: 106 EVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWGASLPEAQVWGYLR 164
Query: 511 DVGSALEYLRHGHSSAPIIHC-----------EGE------------DSVTQTTTMA-TI 546
D AL +L H ++H G +
Sbjct: 165 DTLLALAHL-HSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDP 220
Query: 547 GYMAPE-----YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM--SLRRW-VKE 598
YMAPE YG+ DV+S G+ ++E GE LR+ +
Sbjct: 221 RYMAPELLQGSYGT------AADVFSLGLTILEVACNMEL---PHGGEGWQQLRQGYLPP 271
Query: 599 SLPHRLSE 606
LS
Sbjct: 272 EFTAGLSS 279
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 62/164 (37%)
Query: 452 ECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLN--- 507
E L+ H N++K+ + LV+E + G L F I ++ +
Sbjct: 55 EITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGEL---------FERIKKKKHFSE 105
Query: 508 -----IMIDVGSALEYLRHGHSSAPIIHC-----------EGEDSV-------------T 538
IM + SA+ ++ H ++H E ++
Sbjct: 106 TEASYIMRKLVSAVSHM-HDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPP 161
Query: 539 QTTTMATI----GYMAPE------YGSEGIVSAKCDVYSYGVLL 572
+ T Y APE Y CD++S GV+L
Sbjct: 162 DNQPLKTPCFTLHYAAPELLNQNGYDES------CDLWSLGVIL 199
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 55/179 (30%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISS----------CSNPDFKAL--VLEFMPNGSLEKWLY 494
E + L + H +++ ++ + L ++ +L+ W+
Sbjct: 48 EKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMN 107
Query: 495 SHNYFLDILER--LNIMIDVGSALEYLRHGHSSAPIIH---------------------- 530
+ L+I + + A+E+L H ++H
Sbjct: 108 GRCTIEERERSVCLHIFLQIAEAVEFL-HSKG---LMHRDLKPSNIFFTMDDVVKVGDFG 163
Query: 531 ---------------CEGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLME 574
T + T YM+PE S K D++S G++L E
Sbjct: 164 LVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFE 222
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 19/208 (9%), Positives = 48/208 (23%), Gaps = 35/208 (16%)
Query: 427 RELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFM-P 485
+ L S + R + + ++ + +L
Sbjct: 111 EATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAA 170
Query: 486 NGSLE------KWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC-------- 531
+ LE ++Y IL + + L ++H
Sbjct: 171 SVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANL-QSKG---LVHGHFTPDNLF 226
Query: 532 ---EG-----------EDSVTQTTTMATIGYMAPEY--GSEGIVSAKCDVYSYGVLLMET 575
+G + + + Y E+ S + + + G+ +
Sbjct: 227 IMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRV 286
Query: 576 FTRKRPTDEMFTGEMSLRRWVKESLPHR 603
+ P + G + +P
Sbjct: 287 WCLFLPFGLVTPGIKGSWKRPSLRVPGT 314
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 30/147 (20%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511
E +L RHRN++ + S + + ++ EF+ + + + + + L+ E ++ +
Sbjct: 51 EISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQ 110
Query: 512 VGSALEYLRHGHSSAPIIH---------CEGEDS-----------------VTQTTTMAT 545
V AL++L H H+ I H + S
Sbjct: 111 VCEALQFL-HSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTA 166
Query: 546 IGYMAPEYGSEGIVSAKCDVYSYGVLL 572
Y APE +VS D++S G L+
Sbjct: 167 PEYYAPEVHQHDVVSTATDMWSLGTLV 193
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 38/129 (29%)
Query: 479 LVLEFMPNGSLEKWLYSHNYFLD---ILERL--NIMIDVGSALEYLRHGHSSAPIIH--- 530
+ +E M + S +K Y + Y + I E + I + AL +L+ IIH
Sbjct: 98 ICMELM-STSFDK-FYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK---IIHRDI 152
Query: 531 --------CEGE-------------DSVTQTTTMATIGYMAPE----YGSEGIVSAKCDV 565
G DS+ +T YMAPE S + DV
Sbjct: 153 KPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDV 212
Query: 566 YSYGVLLME 574
+S G+ L E
Sbjct: 213 WSLGITLYE 221
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 49/157 (31%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER------ 505
E +L+ ++H N+I + N L+LE + G L F + E+
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGEL---------FDFLAEKESLTEE 114
Query: 506 --LNIMIDVGSALEYLRHGHSSAPIIH---------CEGEDS---------------VTQ 539
+ + + + YL H I H + +
Sbjct: 115 EATEFLKQILNGVYYL-HSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 540 TTTMATI----GYMAPEYGSEGIVSAKCDVYSYGVLL 572
I ++APE + + + D++S GV+
Sbjct: 171 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT 207
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 37/128 (28%)
Query: 479 LVLEFMPNGSLEKWLYSHNYFLD--ILERL--NIMIDVGSALEYLRHGHSSAPIIH---- 530
+ +E M + SL+K Y I E + I + + ALE+L HS +IH
Sbjct: 83 ICMELM-DTSLDK-FYKQVIDKGQTIPEDILGKIAVSIVKALEHL---HSKLSVIHRDVK 137
Query: 531 -------CEGE-------------DSVTQTTTMATIGYMAPE----YGSEGIVSAKCDVY 566
G+ D V + YMAPE ++ S K D++
Sbjct: 138 PSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIW 197
Query: 567 SYGVLLME 574
S G+ ++E
Sbjct: 198 SLGITMIE 205
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 49/157 (31%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER------ 505
E +LR +RH N+I + N L+LE + G L F + E+
Sbjct: 58 EVNILREIRHPNIITLHDIFENKTDVVLILELVSGGEL---------FDFLAEKESLTED 108
Query: 506 --LNIMIDVGSALEYLRHGHSSAPIIH--------------CEG--------------ED 535
+ + + YL H I H E
Sbjct: 109 EATQFLKQILDGVHYL-HSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA 164
Query: 536 SVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLL 572
T ++APE + + + D++S GV+
Sbjct: 165 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT 201
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 175 NLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFN-ISTMRILTLESNQLSG 233
L L S LQ L L L L+ N++ L P +F+ ++ + IL L N+L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQ- 89
Query: 234 RLPSTIGHSLRNIEYLALSTNNL 256
LP+ + L ++ LAL TN L
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQL 112
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI-TNATK 269
IP I L L N+L + L ++ L L N + I + A+
Sbjct: 23 IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASH 79
Query: 270 LIGLDLGFNSFSGHIPN-TFGNLRHLSVLNVMMNNLTTESSSADQWSF--LSSLTNCRNL 326
+ L LG N I N F L L LN+ N ++ + F L+SLT
Sbjct: 80 IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGS----FEHLNSLT----- 129
Query: 327 SNLALASNPL 336
+L LASNP
Sbjct: 130 -SLNLASNPF 138
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 26/130 (20%)
Query: 126 RILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG 185
L L+ N + LF L LV L L L G
Sbjct: 32 TELLLNDNELGRISSDGLFG-----------------------RLPHLVKLELKRNQLTG 68
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFN-ISTMRILTLESNQLSGRLPSTIGHSLR 244
P +++ L L +NK+ + +F + ++ L L NQ+S + L
Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLN 126
Query: 245 NIEYLALSTN 254
++ L L++N
Sbjct: 127 SLTSLNLASN 136
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 9e-05
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 142 SLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLD 201
+ ++ L + + N + +L L + L I + L LK L+
Sbjct: 15 TPSDVKELVLDNSRSNEG--KLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLE 70
Query: 202 LADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGH--SLRNIEYLALSTNNLIGK 259
L+DN++SG + + L L N++ STI L N++ L L N +
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLF-NCEVTN 127
Query: 260 IPN 262
+ +
Sbjct: 128 LND 130
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 365 NGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLT 424
G + ++L+ L +L L +L L LS N++SG +
Sbjct: 31 EGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88
Query: 425 SLRELHLGSNKLSS 438
+L L+L NK+
Sbjct: 89 NLTHLNLSGNKIKD 102
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 64/170 (37%)
Query: 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER- 505
+ E ++LR V H N+I++ + F LV + M G L F + E+
Sbjct: 69 ATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGEL---------FDYLTEKV 119
Query: 506 -------LNIMIDVGSALEYLRHGHSSAPIIHCE--------GEDS------------VT 538
IM + + L H + I+H + +D +
Sbjct: 120 TLSEKETRKIMRALLEVICAL-HKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLD 175
Query: 539 QTTTMATI----GYMAPE------------YGSEGIVSAKCDVYSYGVLL 572
+ + Y+APE YG E D++S GV++
Sbjct: 176 PGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKE------VDMWSTGVIM 219
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 33/125 (26%)
Query: 479 LVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------- 530
+ +E M EK + + + + AL YL+ H +IH
Sbjct: 101 IAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNI 156
Query: 531 ---CEGE-------------DSVTQTTTMATIGYMAPE-----YGSEGIVSAKCDVYSYG 569
G+ D + + YMAPE ++ + DV+S G
Sbjct: 157 LLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLG 216
Query: 570 VLLME 574
+ L+E
Sbjct: 217 ISLVE 221
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 29/147 (19%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMI 510
+E ++ ++H +++++ + + ++ LVLE NG + ++L + E + M
Sbjct: 60 NEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMH 119
Query: 511 DVGSALEYLRHGHSSAPIIH-----------CEGE--------------DSVTQTTTMAT 545
+ + + YL H H I+H T T
Sbjct: 120 QIITGMLYL-HSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGT 175
Query: 546 IGYMAPEYGSEGIVSAKCDVYSYGVLL 572
Y++PE + + DV+S G +
Sbjct: 176 PNYISPEIATRSAHGLESDVWSLGCMF 202
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 52/161 (32%)
Query: 451 SECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL--- 506
E +LR V H ++I +I S + F LV + M G L F + E++
Sbjct: 148 RETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGEL---------FDYLTEKVALS 198
Query: 507 -----NIMIDVGSALEYLRHGHSSAPIIH----CE----GEDS------------VTQTT 541
+IM + A+ +L H ++ I+H E ++ +
Sbjct: 199 EKETRSIMRSLLEAVSFL-HANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGE 254
Query: 542 TMATI----GYMAPE------YGSEGIVSAKCDVYSYGVLL 572
+ + GY+APE + + D+++ GV+L
Sbjct: 255 KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVIL 295
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 33/150 (22%)
Query: 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMID 511
E +++ +++K S +V+E+ GS+ + N L E I+
Sbjct: 74 EISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQS 133
Query: 512 VGSALEYLRHGHSSAPIIH-----------CEGE-------------DSVTQTTTMATIG 547
LEYL H IH EG D++ + T+ IG
Sbjct: 134 TLKGLEYL-HFMR---KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV--IG 187
Query: 548 ---YMAPEYGSEGIVSAKCDVYSYGVLLME 574
+MAPE E + D++S G+ +E
Sbjct: 188 TPFWMAPEVIQEIGYNCVADIWSLGITAIE 217
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 38/196 (19%), Positives = 59/196 (30%), Gaps = 54/196 (27%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMI 510
+E ++L V R ++ + + D LVL M G L+ +Y R
Sbjct: 233 NEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYA 292
Query: 511 -DVGSALEYLRHGHSSAPIIH------------------------CEGEDSVTQTTTMAT 545
++ LE L H I++ + T + T
Sbjct: 293 AEICCGLEDL-HRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGT 348
Query: 546 IGYMAPE------YGSEGIVSAKCDVYSYGVLLMETFT---------RKRPTDEMFTGEM 590
+GYMAPE Y D ++ G LL E +K +E+
Sbjct: 349 VGYMAPEVVKNERYTFS------PDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVK 402
Query: 591 SLRRWVKESLPHRLSE 606
V E R S
Sbjct: 403 E----VPEEYSERFSP 414
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 25/198 (12%), Positives = 55/198 (27%), Gaps = 47/198 (23%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
S L + + +++ +V E++ GSL++ + + +
Sbjct: 78 TLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTS---PSPVGAIRA 134
Query: 509 MIDVGSALEYL-RHGHSSAPIIHC-----------EGEDSVTQTTTMATIGYMAPEYGSE 556
M + +A + R G + +G +A M
Sbjct: 135 MQSLAAAADAAHRAG-----VALSIDHPSRVRVSIDG------DVVLAYPATMPD----- 178
Query: 557 GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR-------------RWVKESLPHR 603
+ + D+ G L + P E L + +P +
Sbjct: 179 --ANPQDDIRGIGASLYALLVNRWPLPEA-GVRSGLAPAERDTAGQPIEPADIDRDIPFQ 235
Query: 604 LSEVVDTNLVREEQAFSA 621
+S V ++ + SA
Sbjct: 236 ISAVAARSVQGDGGIRSA 253
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALV-LEFMPNGSLEKW 492
K+ + R+ SE ++L ++ H N++ ++ +C+ P +V +EF G+L +
Sbjct: 58 KMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTY 117
Query: 493 LYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSVTQTTTMATIGYMAPE 552
L S G+ + + P+ DS+T + + A+ G++ +
Sbjct: 118 LRSKR------NEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171
Query: 553 YGSEGIVSAKCDVYSYGVLLME 574
S+ + L +E
Sbjct: 172 SLSDVEEEEAPEDLYKDFLTLE 193
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 549 MAPEYGSEGIVSAKCDVYSYGVLLMETFT 577
MAPE + + + + DV+S+GVLL E F+
Sbjct: 262 MAPETIFDRVYTIQSDVWSFGVLLWEIFS 290
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 366 GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTS 425
G I L+ + L +L L +L L LS N++ G + L +
Sbjct: 39 GKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96
Query: 426 LRELHLGSNKLSS 438
L L+L NKL
Sbjct: 97 LTHLNLSGNKLKD 109
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 66/168 (39%)
Query: 452 ECEVL-RNVRHRNLIKIISSCSNPDFKA----LVLEFMPNGSLEKWLYSHNYFLDILERL 506
E + + +++ I+ N +++E M G L F I ER
Sbjct: 71 EVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGEL---------FSRIQERG 121
Query: 507 N----------IMIDVGSALEYLRHGHSSAPIIH-----------CEGEDSV-------- 537
+ IM D+G+A+++L H H+ I H + +D+V
Sbjct: 122 DQAFTEREAAEIMRDIGTAIQFL-HSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGF 177
Query: 538 ---TQTTTMATI----GYMAPE------YGSEGIVSAKCDVYSYGVLL 572
T + T Y+APE Y CD++S GV++
Sbjct: 178 AKETTQNALQTPCYTPYYVAPEVLGPEKYDKS------CDMWSLGVIM 219
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 55/403 (13%), Positives = 109/403 (27%), Gaps = 60/403 (14%)
Query: 73 NLSFLVSLDISENNFH-------GHLPKELGQLRRLRVMSLAYNKLS-GSFPSWIGVLSK 124
+ + +L + E++F L + L L + K+S +
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221
Query: 125 LRILRLDYNNFTGP--IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN 182
L +++ + NL +I + RKL LGL
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281
Query: 183 LQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGH 241
+P ++ LDL L T+ + +L N + R +
Sbjct: 282 PNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQ 339
Query: 242 SLRNIEYLALSTNNLIGKIPNSIT------------NATKLIGLDLGFNSFS----GHIP 285
+ ++ L + + + +L + + + + I
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399
Query: 286 NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNP--LGGILPQL 343
NL ++ + T+ + L L C+ L A L +
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSL--LIGCKKLRRFAFYLRQGGLTDLGLSY 457
Query: 344 IGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLN 403
IG +S +++ + L + G L + L
Sbjct: 458 IGQYSPNVRWM--------LLGYVGESDEG-LMEF-----------------SRGCPNLQ 491
Query: 404 ILNLSGNKLSGHIPPCLA-SLTSLRELHLGSNKLSSSIPSSLA 445
L + G S L SLR L + + S + +
Sbjct: 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534
|
| >3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 33/190 (17%), Positives = 60/190 (31%), Gaps = 51/190 (26%)
Query: 454 EVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVG 513
++ ++ + + PD + +L+ M G L L H F + R ++
Sbjct: 244 SLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAA-EII 302
Query: 514 SALEYLRHGHSSAPIIH-----------CEG-----------EDSVTQTTTMA-TIGYMA 550
LE++ H +++ G + S + T GYMA
Sbjct: 303 LGLEHM-HNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMA 358
Query: 551 PEYGSEGIVSAK------CDVYSYGVLLMETFTRKRP--------TDEMFTGEMSLRRWV 596
PE ++ D +S G +L + P E+ M+L +
Sbjct: 359 PE-----VLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEID--RMTLT--M 409
Query: 597 KESLPHRLSE 606
LP S
Sbjct: 410 AVELPDSFSP 419
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 67/169 (39%)
Query: 452 ECEVLRNV-RHRNLIKII----SSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
E E+ + ++++I+ + + +V+E + G L F I +R
Sbjct: 104 EVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGEL---------FSRIQDRG 154
Query: 507 N----------IMIDVGSALEYLRHGHSSAPIIH-----------CEGEDS--------- 536
+ IM +G A++YL H + I H + ++
Sbjct: 155 DQAFTEREASEIMKSIGEAIQYL-HSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGF 210
Query: 537 ---VTQTTTMATI----GYMAPE------YGSEGIVSAKCDVYSYGVLL 572
T ++ T Y+APE Y CD++S GV++
Sbjct: 211 AKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKS------CDMWSLGVIM 253
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 30/147 (20%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMI 510
E + R++ H++++ + DF +VLE SL + + R +
Sbjct: 90 MEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEAR-YYLR 148
Query: 511 DVGSALEYLRHGHSSAPIIH-----------CEGE--------------DSVTQTTTMAT 545
+ +YL H + +IH + E D + T
Sbjct: 149 QIVLGCQYL-HRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGT 204
Query: 546 IGYMAPEYGSEGIVSAKCDVYSYGVLL 572
Y+APE S+ S + DV+S G ++
Sbjct: 205 PNYIAPEVLSKKGHSFEVDVWSIGCIM 231
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 30/147 (20%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMI 510
E + R++ H++++ + DF +VLE SL + + R +
Sbjct: 64 MEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEAR-YYLR 122
Query: 511 DVGSALEYLRHGHSSAPIIH-----------CEGE--------------DSVTQTTTMAT 545
+ +YL H + +IH + E D + T
Sbjct: 123 QIVLGCQYL-HRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGT 178
Query: 546 IGYMAPEYGSEGIVSAKCDVYSYGVLL 572
Y+APE S+ S + DV+S G ++
Sbjct: 179 PNYIAPEVLSKKGHSFEVDVWSIGCIM 205
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 42/163 (25%)
Query: 451 SECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMI 510
E ++++ + H L+ + S + + +V++ + G L L + +F + +L I
Sbjct: 64 KELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFIC- 122
Query: 511 DVGSALEYLRHGHSSAPIIH-----------------------CEGEDSVTQTTTMA-TI 546
++ AL+YL IIH TQ TTMA T
Sbjct: 123 ELVMALDYL-QNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTK 178
Query: 547 GYMAPEYGSEGIVSAKC--------DVYSYGVLLMETFTRKRP 581
YMAPE + S++ D +S GV E +RP
Sbjct: 179 PYMAPE-----MFSSRKGAGYSFAVDWWSLGVTAYELLRGRRP 216
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 669 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 100.0 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 100.0 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 100.0 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.98 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.98 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.97 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.97 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.97 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.95 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.95 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.94 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.94 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.94 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.94 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.94 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.94 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.94 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.94 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.94 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.94 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.94 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.94 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.94 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.93 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.93 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.93 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.93 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.93 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.93 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.93 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.93 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.93 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.93 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.93 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.93 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.93 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.93 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.93 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.93 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.93 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.93 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.93 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.93 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.93 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.93 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.93 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.92 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.92 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.92 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.92 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.92 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.92 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.92 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.92 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.92 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.92 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.92 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.92 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.92 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.92 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.92 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.92 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.92 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.92 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.92 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.92 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.92 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.92 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.92 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.92 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.92 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.92 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.92 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.92 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.92 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.92 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.92 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.92 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.92 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.92 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.91 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.91 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.91 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.91 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.91 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.91 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.91 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.91 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.91 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.91 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.91 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.91 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.91 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.91 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.91 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.91 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.91 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.91 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.91 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.91 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.91 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.91 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.91 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.91 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.91 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.91 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.91 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.91 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.91 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.91 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.91 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.91 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.91 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.91 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.91 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.91 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.91 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.91 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.91 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.91 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.91 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.91 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.91 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.9 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.9 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.9 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.9 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.9 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.9 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.9 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.9 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.9 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.9 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.9 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.9 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.9 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.9 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.9 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.9 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.9 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.9 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.9 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.9 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.9 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.9 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.9 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.9 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.9 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.9 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.9 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.9 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.9 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.9 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.9 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.9 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.9 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.9 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.9 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.9 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.9 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.9 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.9 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.9 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.9 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.9 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.9 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.89 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.89 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.89 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.89 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.89 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.89 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.89 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.89 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.89 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.89 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.89 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.89 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.89 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.89 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.89 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.89 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.89 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.89 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.89 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.89 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.89 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.89 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.89 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.89 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.88 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.88 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.88 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.88 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.88 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.88 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.88 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.88 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.88 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.88 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.88 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.88 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.88 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.88 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.88 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.87 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.87 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.87 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.87 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.87 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.87 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.87 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.87 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.87 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.87 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.86 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.86 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.86 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.86 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.86 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.86 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.86 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.86 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.85 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.85 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.83 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.82 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.82 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.81 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.79 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.79 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.78 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.77 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.74 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.72 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.71 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 99.7 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.68 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.6 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.59 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.58 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.56 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.52 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.51 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.5 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.48 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.45 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.44 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.43 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.42 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.41 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 99.28 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.24 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.2 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.19 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.18 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.15 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.07 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.87 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.77 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.7 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.61 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.54 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.39 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.33 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 98.3 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.16 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.13 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.12 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.53 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.32 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 96.81 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.52 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.19 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.16 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 95.92 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.8 | |
| 2yle_A | 229 | Protein spire homolog 1; actin-binding protein, ac | 94.03 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 87.39 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=471.90 Aligned_cols=295 Identities=27% Similarity=0.432 Sum_probs=225.7
Q ss_pred CCCChhhHHHHHHHHhhcCCCcccccCCCCCCCCCCCccceeeCCCCCCEEEEEcCCCCCccc---cc------------
Q 040540 4 LNDLTTDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGT---IP------------ 68 (669)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~w~~~~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~---~~------------ 68 (669)
-.+.++|++||++||+++.||. .+.+ |+.+.++|.|.||+|+ .++|+.|||+++++.|. +|
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 3456789999999999998877 6765 9877899999999998 47999999999999886 43
Q ss_pred -----------ccccCCCCCCEEeCCCCcCcccCCc--ccCCCCCCCEEEccCCcCCccCCccc-cCCcccccccccccC
Q 040540 69 -----------LHFGNLSFLVSLDISENNFHGHLPK--ELGQLRRLRVMSLAYNKLSGSFPSWI-GVLSKLRILRLDYNN 134 (669)
Q Consensus 69 -----------~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~ 134 (669)
..++.+++|++|||++|.+.|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|+|++|+
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 4678889999999999999988888 88889999999999998887777655 667777777777777
Q ss_pred ccccCCcc-------------------------cCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCc
Q 040540 135 FTGPIPNS-------------------------LFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPT 189 (669)
Q Consensus 135 l~~~~p~~-------------------------~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~ 189 (669)
+++..|.. +..+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 66554432 25677788888888888877776 88888888888888888888888
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCC
Q 040540 190 EIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATK 269 (669)
Q Consensus 190 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 269 (669)
.++.+++|++|++++|.+++.+|.. .+++|++|++++|.++|.+|..++..+++|++|++++|++.+..|..+..+++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 8888888888888888877766654 66677777777777776677666543466777777777776666666666777
Q ss_pred CCEEeCCCCCccccCccc-cCCCCCCCEEEccCCccc
Q 040540 270 LIGLDLGFNSFSGHIPNT-FGNLRHLSVLNVMMNNLT 305 (669)
Q Consensus 270 L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 305 (669)
|+.|++++|.+.+.+|.. +..+++|++|++++|+++
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 777777777666656544 666666666666666554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=453.76 Aligned_cols=421 Identities=21% Similarity=0.307 Sum_probs=366.7
Q ss_pred CChhhHHHHHHHHhhcCCCccccc-------CCCCCCCCCCCc---cceeeCCCCCCEEEEEcCCCCCcccccccccCCC
Q 040540 6 DLTTDQSSLLAFKAHAFDYRSALA-------NNWSISYPICSW---AGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLS 75 (669)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~l~-------~~w~~~~~~c~~---~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~ 75 (669)
....|+.||.+++.++.++..... .+|..+.++|.| .||+|+.. ++|+.|+|+++++.|.+|+++++|+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 344699999999998866543322 269888899999 99999865 7999999999999999999999999
Q ss_pred CCCEEeCCCCc---------------------------------------------------------------------
Q 040540 76 FLVSLDISENN--------------------------------------------------------------------- 86 (669)
Q Consensus 76 ~L~~L~Ls~N~--------------------------------------------------------------------- 86 (669)
+|++|+|++|.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 99999999984
Q ss_pred ---------CcccCCcccCCCCCCCEEEccCCcCCcc-----------------CCcccc--CCcccccccccccCcccc
Q 040540 87 ---------FHGHLPKELGQLRRLRVMSLAYNKLSGS-----------------FPSWIG--VLSKLRILRLDYNNFTGP 138 (669)
Q Consensus 87 ---------l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~ 138 (669)
++| +|..|+++++|++|+|++|.+++. +|+.++ ++++|++|+|++|++.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 345 788899999999999999999986 999999 999999999999999999
Q ss_pred CCcccCCCCCCCeeeccccc-ccc-cCCcccCCC------CCCCEEEcccCCCcccCCc--cccCCCCCCEEEccCCCCC
Q 040540 139 IPNSLFNLSRLEMLRAEFNI-IGG-TIPSRIGNL------RKLVNLGLWSCNLQGQIPT--EIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 139 ~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~L------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~ 208 (669)
+|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|+++ .+|. .++.+++|++|++++|.++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 99999999999999999998 998 899998887 99999999999999 8888 8999999999999999999
Q ss_pred CCCCccccCCCCCcEEEcccCCCccccchhhhccCCC-CCeeecccCcccccCCccccCCC--CCCEEeCCCCCccccCc
Q 040540 209 GLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN-IEYLALSTNNLIGKIPNSITNAT--KLIGLDLGFNSFSGHIP 285 (669)
Q Consensus 209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~ls~n~l~~~~p 285 (669)
|.+| .+..+++|++|++++|.++ .+|..+. .+++ |++|++++|++. .+|..+..+. +|+.|++++|.+.+.+|
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred cchh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 9999 9999999999999999998 8888876 5888 999999999998 7888877765 89999999999999999
Q ss_pred cccC-------CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh---hccccccc
Q 040540 286 NTFG-------NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF---SASLQNIY 355 (669)
Q Consensus 286 ~~~~-------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~~l~~l~ 355 (669)
..|. .+++|+.|++++|+++..+. ..+..+++|+.|++++|.+....+..+... ...+++|+
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPK--------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCT--------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCH--------HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 8888 88899999999999986532 224457899999999999984333222111 01123899
Q ss_pred eEeecCcccCCCCCcccc--ccCCCcEEecCCCcccccCchhhcCCCCCCeeeC------cCCccceeCcccccCCCCCC
Q 040540 356 AFELGFNDLNGTIPTSIG--TLQQLQGFYVPENNLQGYVPHDLCHLERLNILNL------SGNKLSGHIPPCLASLTSLR 427 (669)
Q Consensus 356 ~l~l~~n~l~~~~~~~~~--~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l------s~n~l~~~~p~~l~~l~~L~ 427 (669)
.+++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++ ++|++.+.+|..++.+++|+
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 9999999999 6777776 89999999999999998 8888999999999999 56788889999999999999
Q ss_pred EEECCCCcceecCCccc
Q 040540 428 ELHLGSNKLSSSIPSSL 444 (669)
Q Consensus 428 ~L~l~~N~l~~~~p~~~ 444 (669)
+|++++|++ +.+|..+
T Consensus 570 ~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 570 QLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp EEECCSSCC-CBCCSCC
T ss_pred EEECCCCcC-CccCHhH
Confidence 999999999 6788653
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-49 Score=446.96 Aligned_cols=414 Identities=21% Similarity=0.311 Sum_probs=350.4
Q ss_pred CChhhHHHHHHHHhhcCCCcccccCCCCCCC-----CC--CCc------------cceeeCCCCCCEEEEEcCCCCCccc
Q 040540 6 DLTTDQSSLLAFKAHAFDYRSALANNWSISY-----PI--CSW------------AGISCGSRHQRVTALNLSDMGLGGT 66 (669)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~l~~~w~~~~-----~~--c~~------------~g~~c~~~~~~v~~L~ls~~~l~~~ 66 (669)
....|+.||++||.++.+| +|+.+. ++ |.| .||.|+. .++|+.|+|+++++.|.
T Consensus 266 ~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred cchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 3456999999999999665 386544 55 999 9999986 57999999999999999
Q ss_pred ccccccCCCCCCEEeC-CCCcCccc-------------------------------------------------------
Q 040540 67 IPLHFGNLSFLVSLDI-SENNFHGH------------------------------------------------------- 90 (669)
Q Consensus 67 ~~~~~~~l~~L~~L~L-s~N~l~~~------------------------------------------------------- 90 (669)
+|+++++|++|++||| ++|.+.|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 77765444
Q ss_pred ---------------------CCcccCCCCCCCEEEccCCcCCc-----------------cCCcccc--CCcccccccc
Q 040540 91 ---------------------LPKELGQLRRLRVMSLAYNKLSG-----------------SFPSWIG--VLSKLRILRL 130 (669)
Q Consensus 91 ---------------------~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L 130 (669)
+|..|+++++|++|+|++|++++ .+|+.++ ++++|++|+|
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 78889999999999999999998 3898887 9999999999
Q ss_pred cccCccccCCcccCCCCCCCeeeccccc-ccc-cCCcccCCCC-------CCCEEEcccCCCcccCCc--cccCCCCCCE
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNI-IGG-TIPSRIGNLR-------KLVNLGLWSCNLQGQIPT--EIGSLQNLKN 199 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~L~-------~L~~L~l~~n~l~~~~p~--~~~~l~~L~~ 199 (669)
++|++.+.+|..++++++|+.|++++|. +++ .+|..+++++ +|++|++++|.++ .+|. .++.+++|+.
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL 577 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence 9999999999999999999999999998 888 8888776655 9999999999998 8888 8999999999
Q ss_pred EEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCC-CCeeecccCcccccCCccccCCCC--CCEEeCC
Q 040540 200 LDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN-IEYLALSTNNLIGKIPNSITNATK--LIGLDLG 276 (669)
Q Consensus 200 L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~ls~n~l~~~~p~~~~~l~~--L~~L~ls 276 (669)
|+|++|.++ .+| .+.++++|+.|++++|.++ .+|..+. .+++ |++|++++|++. .+|..+..+.. |+.|+++
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred EECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 999999999 778 8899999999999999998 8888876 5788 999999999988 77888777654 9999999
Q ss_pred CCCccccCccc---cC--CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhh-h---
Q 040540 277 FNSFSGHIPNT---FG--NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGN-F--- 347 (669)
Q Consensus 277 ~n~l~~~~p~~---~~--~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~--- 347 (669)
+|.+.+.+|.. +. .+++|+.|++++|+++..+. ..+..+++|+.|++++|.+.. +|..... .
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~--------~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~ 723 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT--------ELFATGSPISTIILSNNLMTS-IPENSLKPKDGN 723 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH--------HHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH--------HHHccCCCCCEEECCCCcCCc-cChHHhcccccc
Confidence 99998876642 22 34589999999999875421 123467899999999999884 4433221 1
Q ss_pred hccccccceEeecCcccCCCCCcccc--ccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcC------CccceeCccc
Q 040540 348 SASLQNIYAFELGFNDLNGTIPTSIG--TLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSG------NKLSGHIPPC 419 (669)
Q Consensus 348 ~~~l~~l~~l~l~~n~l~~~~~~~~~--~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~------n~l~~~~p~~ 419 (669)
...+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |++.+.+|..
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 112348899999999998 6777776 89999999999999998 788888999999999976 7888899999
Q ss_pred ccCCCCCCEEECCCCcceecCCccc
Q 040540 420 LASLTSLRELHLGSNKLSSSIPSSL 444 (669)
Q Consensus 420 l~~l~~L~~L~l~~N~l~~~~p~~~ 444 (669)
+..+++|+.|++++|++ +.+|..+
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred HhcCCCCCEEECCCCCC-CccCHhh
Confidence 99999999999999999 7788753
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=438.73 Aligned_cols=391 Identities=32% Similarity=0.522 Sum_probs=317.2
Q ss_pred CCEEEEEcCCCCCcccccccccCC-CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCcc-ccCCcccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNL-SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSW-IGVLSKLRIL 128 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L 128 (669)
..++.|++++|.+.+.+|..+..+ ++|++|++++|.+.+.+|..|+++++|++|++++|.+.|.+|.. ++++++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 345666666666666666666554 67777777777777667777777777777777777776666654 6777777777
Q ss_pred cccccCccccCCcccCCCC-CCCeeecccccccccCCcccCC--CCCCCEEEcccCCCcccCCccccCCCCCCEEEccCC
Q 040540 129 RLDYNNFTGPIPNSLFNLS-RLEMLRAEFNIIGGTIPSRIGN--LRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADN 205 (669)
Q Consensus 129 ~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~--L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N 205 (669)
+|++|++++.+|..+.+++ +|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 7777777767777776665 6777777777777777776666 777888888888888888888888888889999888
Q ss_pred CCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCc
Q 040540 206 KLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP 285 (669)
Q Consensus 206 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p 285 (669)
.+++.+|..+.++++|+.|++++|.+++.+|..+. .+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 88888888888888899999999988888888776 58889999999999888888888888999999999999888888
Q ss_pred cccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh------------------
Q 040540 286 NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF------------------ 347 (669)
Q Consensus 286 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------ 347 (669)
.+++.+++|++|++++|++++.. ...+..+++|+.|++++|++.|.+|..+...
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNI--------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEEC--------CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE
T ss_pred hHHhcCCCCCEEECCCCcccCcC--------CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccc
Confidence 88888899999999988887542 2446778899999999999888777654321
Q ss_pred ------------------------------------------------hccccccceEeecCcccCCCCCccccccCCCc
Q 040540 348 ------------------------------------------------SASLQNIYAFELGFNDLNGTIPTSIGTLQQLQ 379 (669)
Q Consensus 348 ------------------------------------------------~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~ 379 (669)
...+..+..+++++|.++|.+|..++.++.|+
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 659 (768)
T 3rgz_A 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659 (768)
T ss_dssp CCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCC
T ss_pred cccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCC
Confidence 01235678999999999999999999999999
Q ss_pred EEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCcccccccCc
Q 040540 380 GFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFD 450 (669)
Q Consensus 380 ~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~ 450 (669)
.|++++|.++|.+|..+..+++|+.||+++|+++|.+|..++.+++|++|++++|+++|.+|....+..|.
T Consensus 660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 730 (768)
T 3rgz_A 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999876555543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.86 Aligned_cols=375 Identities=20% Similarity=0.189 Sum_probs=266.5
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|++++|.+++..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++.+..|..|+++++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57899999999999988999999999999999999999999999999999999999999999888999999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCC--EEEccCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK--NLDLADNKLS 208 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~--~L~l~~N~l~ 208 (669)
++|++++..|..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..++.+++|+ .|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999987788899999999999999999885544555599999999999999988888899999998 8889998888
Q ss_pred CCCCccccCC---------------------------------------------------CCCcEEEcccCCCccccch
Q 040540 209 GLIPPTIFNI---------------------------------------------------STMRILTLESNQLSGRLPS 237 (669)
Q Consensus 209 ~~~p~~~~~l---------------------------------------------------~~L~~L~l~~n~l~~~~p~ 237 (669)
+..|..+... .+|+.|++++|.+++ ++.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~ 271 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISS 271 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS-CCT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc-cCH
Confidence 7665443221 045566666666654 333
Q ss_pred hhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccc
Q 040540 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFL 317 (669)
Q Consensus 238 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 317 (669)
..+..+++|++|++++|++. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+....
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~------- 343 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT------- 343 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS-------
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch-------
Confidence 32335677777777777765 5666677777777777777777766666677777777777777665432110
Q ss_pred cccCCCCCCCEEECcCCCCcccc--chhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchh
Q 040540 318 SSLTNCRNLSNLALASNPLGGIL--PQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHD 395 (669)
Q Consensus 318 ~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~ 395 (669)
..+..+++|+.|++++|.+.+.. +..+ ..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..|..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQL----RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTT----TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hhhhccCcCCEEECCCCccccccCcchhc----ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 12344555556666555555432 2221 12445555555555555555555555555555555555555444322
Q ss_pred -hcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 396 -LCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 396 -~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
+..+++|+.|++++|.+.+..|..++.+++|++|++++|++.+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 4555555555555555555555555555555555555555543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=351.71 Aligned_cols=293 Identities=28% Similarity=0.482 Sum_probs=269.1
Q ss_pred CCChhhHHHHHHHHhhcCCCcccccCCCCCCCCCCC--ccceeeCCCC--CCEEEEEcCCCCCcc--cccccccCCCCCC
Q 040540 5 NDLTTDQSSLLAFKAHAFDYRSALANNWSISYPICS--WAGISCGSRH--QRVTALNLSDMGLGG--TIPLHFGNLSFLV 78 (669)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~l~~~w~~~~~~c~--~~g~~c~~~~--~~v~~L~ls~~~l~~--~~~~~~~~l~~L~ 78 (669)
.+.+.|++||++||+++.++. .+.+ |..+.++|. |.||.|.... ++|+.|+++++++.+ .+|..+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 367789999999999997765 6655 987778998 9999998654 789999999999999 8999999999999
Q ss_pred EEeCCC-CcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 79 SLDISE-NNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 79 ~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+|++++ |.+.+.+|..|+++++|++|+|++|++.+.+|..|.++++|++|+|++|.+++.+|..+.++++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccCCCC-CCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccc
Q 040540 158 IIGGTIPSRIGNLR-KLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLP 236 (669)
Q Consensus 158 ~l~~~~p~~~~~L~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (669)
.+++.+|..++++. +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|+.|++++|.+++.+|
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 99999999999998 999999999999999999999987 9999999999999999999999999999999999987666
Q ss_pred hhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCc
Q 040540 237 STIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNN 303 (669)
Q Consensus 237 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~ 303 (669)
. +. .+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|.. ..+++|+.+++.+|.
T Consensus 239 ~-~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 239 K-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp G-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred c-cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5 43 6889999999999999899999999999999999999999888876 778888888888876
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-42 Score=383.36 Aligned_cols=364 Identities=19% Similarity=0.289 Sum_probs=318.6
Q ss_pred CCcccccccccCCCCCCEEeCCCCcCccc-----------------CCcccC--CCCCCCEEEccCCcCCccCCccccCC
Q 040540 62 GLGGTIPLHFGNLSFLVSLDISENNFHGH-----------------LPKELG--QLRRLRVMSLAYNKLSGSFPSWIGVL 122 (669)
Q Consensus 62 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l 122 (669)
+++| +|..++++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|+.|+++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3445 788899999999999999999986 999999 99999999999999999999999999
Q ss_pred cccccccccccC-ccc-cCCcccCCC------CCCCeeecccccccccCCc--ccCCCCCCCEEEcccCCCcccCCcccc
Q 040540 123 SKLRILRLDYNN-FTG-PIPNSLFNL------SRLEMLRAEFNIIGGTIPS--RIGNLRKLVNLGLWSCNLQGQIPTEIG 192 (669)
Q Consensus 123 ~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~l~~n~l~~~~p~--~~~~L~~L~~L~l~~n~l~~~~p~~~~ 192 (669)
++|++|+|++|+ ++| .+|..++++ ++|++|++++|.++ .+|. .++++++|++|++++|.++|.+| .++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 998 899998887 99999999999999 8998 99999999999999999999999 899
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCC-CcEEEcccCCCccccchhhhc-cCCCCCeeecccCcccccCCcccc-----
Q 040540 193 SLQNLKNLDLADNKLSGLIPPTIFNIST-MRILTLESNQLSGRLPSTIGH-SLRNIEYLALSTNNLIGKIPNSIT----- 265 (669)
Q Consensus 193 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~----- 265 (669)
.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+.. .+++|++|++++|++.+..|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 9999999999999999 78999999999 999999999998 78876652 234899999999999999999888
Q ss_pred --CCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchh
Q 040540 266 --NATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQL 343 (669)
Q Consensus 266 --~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 343 (669)
.+.+|+.|++++|.+....+..+..+++|+.|++++|+++..+..... .....+.++++|+.|++++|.+. .+|..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK-DENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE-ETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc-cccccccccCCccEEECcCCcCC-ccChh
Confidence 888999999999999955445567799999999999999865432210 00011334559999999999999 45544
Q ss_pred HhhhhccccccceEeecCcccCCCCCccccccCCCcEEec------CCCcccccCchhhcCCCCCCeeeCcCCccceeCc
Q 040540 344 IGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYV------PENNLQGYVPHDLCHLERLNILNLSGNKLSGHIP 417 (669)
Q Consensus 344 ~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l------~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p 417 (669)
+.. ..+++|+.|++++|.+.+ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|+.|++++|++ +.+|
T Consensus 507 ~~~--~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 507 FRA--TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GST--TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhh--ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 320 247889999999999998 8999999999999999 56888999999999999999999999999 6788
Q ss_pred ccccCCCCCCEEECCCCccee
Q 040540 418 PCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 418 ~~l~~l~~L~~L~l~~N~l~~ 438 (669)
..+. ++|+.|++++|++..
T Consensus 583 ~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 583 EKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCCC--TTCCEEECCSCTTCE
T ss_pred HhHh--CcCCEEECcCCCCcc
Confidence 8765 799999999999874
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-40 Score=366.17 Aligned_cols=381 Identities=21% Similarity=0.199 Sum_probs=299.1
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
..+++.|++++|.+.+..|..|.++++|++|+|++|.+.+..|..|+++++|++|++++|++.+..|..++++++|++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 35688899999988888888888899999999999988888888888888999999998888876677788888888888
Q ss_pred ccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCC--EEEcccCCCccc---------------------
Q 040540 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLV--NLGLWSCNLQGQ--------------------- 186 (669)
Q Consensus 130 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~--~L~l~~n~l~~~--------------------- 186 (669)
|++|++++..++.+..+++|++|++++|.+.+..|..++.+++|+ .|++++|.+.+.
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 888888875445555588888888888888777676677766666 566666555443
Q ss_pred ------------------------------------------------------CCccccCCCCCCEEEccCCCCCCCCC
Q 040540 187 ------------------------------------------------------IPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 187 ------------------------------------------------------~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
.+..|+.+++|++|++++|.++ .+|
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp 294 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCC
Confidence 3344677889999999999988 578
Q ss_pred ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCc-cccCCCCCCEEeCCCCCccccC--ccccC
Q 040540 213 PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPN-SITNATKLIGLDLGFNSFSGHI--PNTFG 289 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~--p~~~~ 289 (669)
..+.++++|++|++++|.+.+..|..+. .+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.. +..+.
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 8889999999999999999865565555 689999999999988866655 4888899999999999888765 67788
Q ss_pred CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCC
Q 040540 290 NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP 369 (669)
Q Consensus 290 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 369 (669)
.+++|+.|++++|.+.+... ..+..+++|+.|++++|.+.+..+... ...+++|+.+++++|.+.+..|
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKT--------EAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp TCTTCCEEECCSCSCEEECT--------TTTTTCTTCSEEECTTCCEECCTTCCT---TTTCTTCCEEECTTCCCBTTCT
T ss_pred cCCCCCEEECCCCcCCcCCH--------HHhcCCccCCeEECCCCcCCCcccchh---hhCcccCCEEECCCCccCCcCH
Confidence 89999999999888776522 335667888888888888776544321 1246778888888888887777
Q ss_pred ccccccCCCcEEecCCCccccc---CchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCcc
Q 040540 370 TSIGTLQQLQGFYVPENNLQGY---VPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 370 ~~~~~l~~L~~l~l~~n~~~~~---~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|++.+..|..++.+++|++|++++|++.+..|..
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 8888888888888888887763 2355777888888888888888877888888888888888888887665543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=365.95 Aligned_cols=370 Identities=19% Similarity=0.184 Sum_probs=246.6
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
..+++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|+|++|.+.+..|+.|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35789999999999988888899999999999999999988898999999999999999999988899999999999999
Q ss_pred ccccCccccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCC----EEEccC
Q 040540 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK----NLDLAD 204 (669)
Q Consensus 130 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~l~~ 204 (669)
|++|.+++..|..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..|..++.+++|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998777889999999999999999876 6799999999999999999998877666554333222 333333
Q ss_pred CCCCCC--------------------------------------------------------------------------
Q 040540 205 NKLSGL-------------------------------------------------------------------------- 210 (669)
Q Consensus 205 N~l~~~-------------------------------------------------------------------------- 210 (669)
|.+++.
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 332211
Q ss_pred -----------------------------CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCC
Q 040540 211 -----------------------------IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIP 261 (669)
Q Consensus 211 -----------------------------~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p 261 (669)
+| .+..+++|+.|++++|.+ +.+|. + .+++|++|++++|+..+..
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC-
T ss_pred cccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccch-
Confidence 12 345556788888888888 57773 3 4667777777766544333
Q ss_pred ccccCCCCCCEEeCCCCCcccc--CccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccc
Q 040540 262 NSITNATKLIGLDLGFNSFSGH--IPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGI 339 (669)
Q Consensus 262 ~~~~~l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 339 (669)
.+..+++|+.|++++|.+.+. +|..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+.+.
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---------~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---------ANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC---------CCCTTCTTCCEEECTTSEEEST
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch---------hhccCCCCCCeeECCCCccCCc
Confidence 445666666666666666544 2555566666666666666655432 1233445555555555555444
Q ss_pred cc-hhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccc-cCchhhcCCCCCCeeeCcCCccceeCc
Q 040540 340 LP-QLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQG-YVPHDLCHLERLNILNLSGNKLSGHIP 417 (669)
Q Consensus 340 ~~-~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p 417 (669)
.+ ..+ ..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+ .+|..+..+++|+.|++++|++.+..|
T Consensus 415 ~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 415 TEFSAF----LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp TTTTTT----TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cChhhh----hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 33 111 123445555555555554444445555555555555555544 234444455555555555555554444
Q ss_pred ccccCCCCCCEEECCCCcceec
Q 040540 418 PCLASLTSLRELHLGSNKLSSS 439 (669)
Q Consensus 418 ~~l~~l~~L~~L~l~~N~l~~~ 439 (669)
..++.+++|+.|++++|++.+.
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCE
T ss_pred hhhcccccCCEEECCCCcCCCc
Confidence 4455555555555555555443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=369.27 Aligned_cols=380 Identities=22% Similarity=0.275 Sum_probs=255.3
Q ss_pred CCCccceeeCCC-----------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEc
Q 040540 38 ICSWAGISCGSR-----------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSL 106 (669)
Q Consensus 38 ~c~~~g~~c~~~-----------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 106 (669)
.|.|.|+ |+.+ ...++.|++++|++++..|..|.++++|++|++++|.+.+..|..|+.+++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4888887 6532 247999999999999988999999999999999999999988999999999999999
Q ss_pred cCCcCCccCCccccCCcccccccccccCccc-cCCcccCCCCCCCeeecccccccccCC-cccCCCCCCCEEEcccCCCc
Q 040540 107 AYNKLSGSFPSWIGVLSKLRILRLDYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQ 184 (669)
Q Consensus 107 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~ 184 (669)
++|++.+..|..|+++++|++|+|++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999998878889999999999999999987 467889999999999999998555554 68999999999999999999
Q ss_pred ccCCccccCCC------------------------CCCEEEccCCCCCCCC--Ccc-ccCC-------------------
Q 040540 185 GQIPTEIGSLQ------------------------NLKNLDLADNKLSGLI--PPT-IFNI------------------- 218 (669)
Q Consensus 185 ~~~p~~~~~l~------------------------~L~~L~l~~N~l~~~~--p~~-~~~l------------------- 218 (669)
+..|..++.++ +|++|++++|.+++.. |.. ...+
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 98888877655 4555555555554421 000 0001
Q ss_pred --------------------------------------------------------------------CCCcEEEcccCC
Q 040540 219 --------------------------------------------------------------------STMRILTLESNQ 230 (669)
Q Consensus 219 --------------------------------------------------------------------~~L~~L~l~~n~ 230 (669)
.+|+.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 122333333333
Q ss_pred CccccchhhhccCCCCCeeecccCcccccCC---ccccCCCCCCEEeCCCCCccccCc--cccCCCCCCCEEEccCCccc
Q 040540 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIP---NSITNATKLIGLDLGFNSFSGHIP--NTFGNLRHLSVLNVMMNNLT 305 (669)
Q Consensus 231 l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~ 305 (669)
+. .+|..++..+++|++|++++|++.+..| ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|+++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 32 2343333334555555555555544332 124445555555555555543221 23445555555555555554
Q ss_pred cCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCC
Q 040540 306 TESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPE 385 (669)
Q Consensus 306 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 385 (669)
..+ ..+..+++|+.|++++|.+....... .+.|+.+++++|.+++.. ..+++|+.|++++
T Consensus 401 ~lp---------~~~~~~~~L~~L~Ls~N~l~~l~~~~-------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 401 PMP---------DSCQWPEKMRFLNLSSTGIRVVKTCI-------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISR 460 (549)
T ss_dssp CCC---------SCCCCCTTCCEEECTTSCCSCCCTTS-------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred cCC---------hhhcccccccEEECCCCCcccccchh-------cCCceEEECCCCChhhhc----ccCChhcEEECCC
Confidence 332 12334455666666666554322110 135666666666666532 3566777777777
Q ss_pred CcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCC
Q 040540 386 NNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIP 441 (669)
Q Consensus 386 n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 441 (669)
|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7776 3444 3456777777777777777666667777777777777777765444
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=381.02 Aligned_cols=397 Identities=22% Similarity=0.208 Sum_probs=248.7
Q ss_pred CCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccC-CcccCCCCCCCEEEccCCcCCccCCc
Q 040540 39 CSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHL-PKELGQLRRLRVMSLAYNKLSGSFPS 117 (669)
Q Consensus 39 c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~ 117 (669)
|.|..|.+ .+.+++.|||++|.+++..+.+|.++++|++|||++|.+.+.+ |..|+++++|++|+|++|.+.+..|+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 44666655 3467888888888888888888888888888888888655555 67788888888888888888877788
Q ss_pred cccCCcccccccccccCccccCCcc--cCCCCCCCeeecccccccccCC-cccCCCCCCCEEEcccCCCcccCCccccCC
Q 040540 118 WIGVLSKLRILRLDYNNFTGPIPNS--LFNLSRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQGQIPTEIGSL 194 (669)
Q Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l 194 (669)
.|+++++|++|+|++|.+++..|.. +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..|..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 8888888888888888888766554 7788888888888888876654 567888888888888877765544433222
Q ss_pred --------------------------------------------------------------------------------
Q 040540 195 -------------------------------------------------------------------------------- 194 (669)
Q Consensus 195 -------------------------------------------------------------------------------- 194 (669)
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence
Q ss_pred --------------CCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC
Q 040540 195 --------------QNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI 260 (669)
Q Consensus 195 --------------~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~ 260 (669)
++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|++.+..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccC
Confidence 2333344444444433444445555555555555555543343333 4566666666666665555
Q ss_pred CccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcc---------cccc--------------
Q 040540 261 PNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQ---------WSFL-------------- 317 (669)
Q Consensus 261 p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~---------~~~~-------------- 317 (669)
|..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.++..+..+.. ...+
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence 66666666666666666666555555566666666666666665543211000 0000
Q ss_pred ---------cccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccC-----CCCCccccccCCCcEEec
Q 040540 318 ---------SSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN-----GTIPTSIGTLQQLQGFYV 383 (669)
Q Consensus 318 ---------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~-----~~~~~~~~~l~~L~~l~l 383 (669)
..+..+++|+.|++++|.+.+..+... .....+|+.|++++|.+. +..+..+..+++|+.|++
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT---PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS---SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccc---cccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 001134444444444444443222110 112344555555555554 223344666677777777
Q ss_pred CCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCcc
Q 040540 384 PENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 384 ~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
++|.+++..|..+..+++|+.|++++|++++..|..+. ++|+.|++++|++.+..|..
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 77777777777777777777777777777765555444 67777777777777666654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=373.31 Aligned_cols=359 Identities=18% Similarity=0.223 Sum_probs=307.7
Q ss_pred ccccccCCCCCCEEeCCCCcCcc-----------------cCCcccC--CCCCCCEEEccCCcCCccCCccccCCccccc
Q 040540 67 IPLHFGNLSFLVSLDISENNFHG-----------------HLPKELG--QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRI 127 (669)
Q Consensus 67 ~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 127 (669)
+|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|+++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999998 3899988 9999999999999999999999999999999
Q ss_pred ccccccC-ccc-cCCcccCCCC-------CCCeeecccccccccCCc--ccCCCCCCCEEEcccCCCcccCCccccCCCC
Q 040540 128 LRLDYNN-FTG-PIPNSLFNLS-------RLEMLRAEFNIIGGTIPS--RIGNLRKLVNLGLWSCNLQGQIPTEIGSLQN 196 (669)
Q Consensus 128 L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~l~~n~l~~~~p~--~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~ 196 (669)
|+|++|+ +++ .+|..+++++ +|+.|++++|.+. .+|. .++++++|++|++++|.++ .+| .|+.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 998 8887666555 9999999999999 8998 9999999999999999998 888 8999999
Q ss_pred CCEEEccCCCCCCCCCccccCCCC-CcEEEcccCCCccccchhhhccC--CCCCeeecccCcccccCCccc---c--CCC
Q 040540 197 LKNLDLADNKLSGLIPPTIFNIST-MRILTLESNQLSGRLPSTIGHSL--RNIEYLALSTNNLIGKIPNSI---T--NAT 268 (669)
Q Consensus 197 L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l--~~L~~L~ls~n~l~~~~p~~~---~--~l~ 268 (669)
|+.|++++|.++ .+|..+.++++ |+.|++++|.++ .+|..+. .+ ++|+.|++++|++.+.+|... . .+.
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 999999999999 78999999999 999999999998 7887665 34 349999999999998776433 2 345
Q ss_pred CCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhh
Q 040540 269 KLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFS 348 (669)
Q Consensus 269 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 348 (669)
+|+.|++++|.+....+..+..+++|+.|++++|+++..+...... ..+.+.++++|+.|++++|.+. .+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~--~ 749 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-KDGNYKNTYLLTTIDLRFNKLT-SLSDDFR--A 749 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-TTSCCTTGGGCCEEECCSSCCC-CCCGGGS--T
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc-ccccccccCCccEEECCCCCCc-cchHHhh--h
Confidence 8999999999999443344568999999999999998654322100 0011335569999999999998 4554432 0
Q ss_pred ccccccceEeecCcccCCCCCccccccCCCcEEecCC------CcccccCchhhcCCCCCCeeeCcCCccceeCcccccC
Q 040540 349 ASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPE------NNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLAS 422 (669)
Q Consensus 349 ~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~------n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~ 422 (669)
..+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|++ +.+|..+.
T Consensus 750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~- 826 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT- 826 (876)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-
Confidence 247889999999999998 788999999999999976 888999999999999999999999999 68888765
Q ss_pred CCCCCEEECCCCcceec
Q 040540 423 LTSLRELHLGSNKLSSS 439 (669)
Q Consensus 423 l~~L~~L~l~~N~l~~~ 439 (669)
++|+.|++++|++...
T Consensus 827 -~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 827 -PQLYILDIADNPNISI 842 (876)
T ss_dssp -SSSCEEECCSCTTCEE
T ss_pred -CCCCEEECCCCCCCcc
Confidence 6999999999998753
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=360.01 Aligned_cols=382 Identities=21% Similarity=0.209 Sum_probs=237.0
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++.+..|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46888999999998888888888999999999999888877888888999999999999888777788889999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCC----CEEEccCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNL----KNLDLADN 205 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L----~~L~l~~N 205 (669)
++|++++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..|..++.+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9998887666678888999999999888876 468888888899999988888887766666666666 56666666
Q ss_pred CCCCCCC-------------------------------------------------------------------------
Q 040540 206 KLSGLIP------------------------------------------------------------------------- 212 (669)
Q Consensus 206 ~l~~~~p------------------------------------------------------------------------- 212 (669)
.+++..|
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 5544332
Q ss_pred --------ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccc---------------------ccCCcc
Q 040540 213 --------PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLI---------------------GKIPNS 263 (669)
Q Consensus 213 --------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~---------------------~~~p~~ 263 (669)
..+..+++|+.|++++|.+. .+|..+. .+ +|++|++++|.+. +..+.
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~-~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY-NF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCS-CC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC-
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhc-cC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc-
Confidence 22233445555555555544 3443332 12 3333333333322 22211
Q ss_pred ccCCCCCCEEeCCCCCccccC--ccccCCCCCCCEEEccCCccccCCCCCc-------------cc---ccccccCCCCC
Q 040540 264 ITNATKLIGLDLGFNSFSGHI--PNTFGNLRHLSVLNVMMNNLTTESSSAD-------------QW---SFLSSLTNCRN 325 (669)
Q Consensus 264 ~~~l~~L~~L~ls~n~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~~~~~-------------~~---~~~~~l~~l~~ 325 (669)
..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+.+.... .. .....+..+++
T Consensus 344 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp -CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred -ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 34556666666666665432 4455556666666666665544311000 00 00012334455
Q ss_pred CCEEECcCCCCccccchhHhhhhccccccceEeecCcccC-CCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCe
Q 040540 326 LSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN-GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNI 404 (669)
Q Consensus 326 L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~ 404 (669)
|+.|++++|.+.+..|..+. .+++|+.+++++|.+. +.+|..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 423 L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCEEeCcCCcccccchhhhh----cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 55555555555544443322 2445555555555554 344555555555555555555555555555555555555
Q ss_pred eeCcCCccceeCcccccCCCCCCEEECCCCcceecCC
Q 040540 405 LNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIP 441 (669)
Q Consensus 405 L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 441 (669)
|++++|++.+..|..+..+++|+.|++++|++.+..|
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 5555555555544455555555555555555554444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=361.17 Aligned_cols=380 Identities=24% Similarity=0.229 Sum_probs=275.1
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|++.+..+..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+..+..|+++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57999999999999888888999999999999999999999999999999999999999999666668999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCcccc--CCCCCCEEEccCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG--SLQNLKNLDLADNKLS 208 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~N~l~ 208 (669)
++|++++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988888999999999999999999999999999999999999999999988777654 5589999999999999
Q ss_pred CCCCccccCC---------------------------CCCcEEEcccCCCccccchhhhccCC--CCCeeecccCccccc
Q 040540 209 GLIPPTIFNI---------------------------STMRILTLESNQLSGRLPSTIGHSLR--NIEYLALSTNNLIGK 259 (669)
Q Consensus 209 ~~~p~~~~~l---------------------------~~L~~L~l~~n~l~~~~p~~~~~~l~--~L~~L~ls~n~l~~~ 259 (669)
+..|..+..+ ++|+.|++++|.+++..|..+. .++ +|++|++++|++.+.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 8888776654 4567777777777766665554 343 488888888888888
Q ss_pred CCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccc--cccCCCCCCCEEECcCCCCc
Q 040540 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFL--SSLTNCRNLSNLALASNPLG 337 (669)
Q Consensus 260 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~n~l~ 337 (669)
.|..+..+++|+.|++++|.+.+..|..|.++++|+.|+++.|...+..... ....+ ..+..+++|+.|++++|.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-SLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc-cccccChhhcccCCCCCEEECCCCccC
Confidence 8888888888888888888888888888888888888888765433210000 00000 13455677777777777776
Q ss_pred cccchhHhhhhccccccceEee----------------------------cCcccCCCCCccccccCCCcEEecCCCccc
Q 040540 338 GILPQLIGNFSASLQNIYAFEL----------------------------GFNDLNGTIPTSIGTLQQLQGFYVPENNLQ 389 (669)
Q Consensus 338 ~~~~~~~~~~~~~l~~l~~l~l----------------------------~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~ 389 (669)
+..+..+.. +.+|+.+++ ++|.+.+..|..+..+++|+.+++++|.+.
T Consensus 343 ~~~~~~~~~----l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 343 GIKSNMFTG----LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCCTTTTTT----CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CCChhHhcc----ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 655443322 334444444 444444444444444444555555554444
Q ss_pred ccCc-hhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcc
Q 040540 390 GYVP-HDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436 (669)
Q Consensus 390 ~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l 436 (669)
+.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 4333 3344444444444444444443333444444444444444433
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=352.86 Aligned_cols=374 Identities=21% Similarity=0.207 Sum_probs=308.0
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
..+++.|++++|.+.+..|..|.++++|++|+|++|.+.+..|..|+++++|++|++++|.+.+..|..++++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 35789999999999988888899999999999999999988899999999999999999999877778899999999999
Q ss_pred ccccCccc-cCCcccCCCCCCCeeecccccccccCCcccCCCCC---------------------------CCEEEcccC
Q 040540 130 LDYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK---------------------------LVNLGLWSC 181 (669)
Q Consensus 130 L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~---------------------------L~~L~l~~n 181 (669)
|++|.+++ .+|..++++++|++|++++|.+.+..|..++.+++ |+.|++++|
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 99999886 56888999999999999999888766655443332 233333333
Q ss_pred CCc-----------------------------------------------------------------------------
Q 040540 182 NLQ----------------------------------------------------------------------------- 184 (669)
Q Consensus 182 ~l~----------------------------------------------------------------------------- 184 (669)
.+.
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence 221
Q ss_pred ---ccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccccc--
Q 040540 185 ---GQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGK-- 259 (669)
Q Consensus 185 ---~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~-- 259 (669)
..+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+.+ .+. .+++|++|++++|++.+.
T Consensus 295 ~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~-~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 295 VSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKV-ALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp CCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCC-CCTTCCEEECCSSCEEEEEE
T ss_pred ccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhc-cCCCCCEEECcCCccCCCcc
Confidence 1222 456677899999999999 6777 45 9999999999999665544 333 689999999999998876
Q ss_pred CCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccc
Q 040540 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGI 339 (669)
Q Consensus 260 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 339 (669)
.|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++.+.... ..+..+++|+.|++++|.+.+.
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF-------SAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTT-------TTTTTCTTCCEEECTTSCCEEC
T ss_pred hhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccCh-------hhhhccccCCEEECcCCCCCcc
Confidence 37888999999999999999885 567889999999999999998775321 2466788999999999999887
Q ss_pred cchhHhhhhccccccceEeecCcccCC-CCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcc
Q 040540 340 LPQLIGNFSASLQNIYAFELGFNDLNG-TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP 418 (669)
Q Consensus 340 ~~~~~~~~~~~l~~l~~l~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~ 418 (669)
.|..+. .+++|+.+++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|.
T Consensus 440 ~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 440 FDGIFL----GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp CTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred chhhhc----CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 776553 36789999999999987 4788899999999999999999998888899999999999999999988899
Q ss_pred cccCCCCCCEEECCCCcceecCCcc
Q 040540 419 CLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 419 ~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
.++.+++|+.|++++|++. .+|..
T Consensus 516 ~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp GTTTCTTCCEEECTTSCCC-CEESC
T ss_pred HccCCCcCCEEECCCCcCc-ccCHh
Confidence 9999999999999999987 45543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=342.85 Aligned_cols=366 Identities=20% Similarity=0.216 Sum_probs=243.5
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccC-CcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHL-PKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
.+++.|++++|.+.+..|..|+++++|++|++++|.+.+.+ |..|..+++|++|+|++|++.+..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45777777777777766777777777777777777776444 45577777777777777777766677777777777777
Q ss_pred ccccCccccCCcc--cCCCCCCCeeecccccccccCCcc-cCCCCCCCEEEcccCCCcccCCccccCC--CCCCEEEccC
Q 040540 130 LDYNNFTGPIPNS--LFNLSRLEMLRAEFNIIGGTIPSR-IGNLRKLVNLGLWSCNLQGQIPTEIGSL--QNLKNLDLAD 204 (669)
Q Consensus 130 L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~-~~~L~~L~~L~l~~n~l~~~~p~~~~~l--~~L~~L~l~~ 204 (669)
|++|++++..|.. +.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..|..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777777644443 777777777777777777666655 6777777777777777777766666655 5677777777
Q ss_pred CCCCCCCCcc--------ccCCCCCcEEEcccCCCccccchhhhcc--CCCCCeeecccCcccccCCccccCCCCCCEEe
Q 040540 205 NKLSGLIPPT--------IFNISTMRILTLESNQLSGRLPSTIGHS--LRNIEYLALSTNNLIGKIPNSITNATKLIGLD 274 (669)
Q Consensus 205 N~l~~~~p~~--------~~~l~~L~~L~l~~n~l~~~~p~~~~~~--l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 274 (669)
|.+.+..+.. +..+++|++|++++|.+++.+|..+... ..+|+.|++++|.+.+....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------ 257 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------ 257 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence 7776544332 2345667777777777766666655432 25667777776654432110
Q ss_pred CCCCCccccCccccCC--CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhcccc
Q 040540 275 LGFNSFSGHIPNTFGN--LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQ 352 (669)
Q Consensus 275 ls~n~l~~~~p~~~~~--l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~ 352 (669)
.+.+....+..+.. .++|+.|++++|++.+... ..+..+++|+.|++++|.+.+..+..+. .++
T Consensus 258 --~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~ 323 (455)
T 3v47_A 258 --HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK--------SVFSHFTDLEQLTLAQNEINKIDDNAFW----GLT 323 (455)
T ss_dssp --CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT--------TTTTTCTTCCEEECTTSCCCEECTTTTT----TCT
T ss_pred --hhhhccCcccccccccccCceEEEecCccccccch--------hhcccCCCCCEEECCCCcccccChhHhc----Ccc
Confidence 00111111111111 1345555555555443311 1234445555555555555554443332 245
Q ss_pred ccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECC
Q 040540 353 NIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG 432 (669)
Q Consensus 353 ~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 432 (669)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+..+..+++|+.|+++
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 56666666666666666777788899999999999998889999999999999999999998777778899999999999
Q ss_pred CCcceecCCc
Q 040540 433 SNKLSSSIPS 442 (669)
Q Consensus 433 ~N~l~~~~p~ 442 (669)
+|++.+..|.
T Consensus 404 ~N~l~~~~~~ 413 (455)
T 3v47_A 404 TNPWDCSCPR 413 (455)
T ss_dssp SSCBCCCTTT
T ss_pred CCCcccCCCc
Confidence 9999987774
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=345.60 Aligned_cols=364 Identities=22% Similarity=0.274 Sum_probs=225.2
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+.+..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++. .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57888999999888877778888899999999999888888888888999999999999888 46655 7888999999
Q ss_pred cccCccc-cCCcccCCCCCCCeeecccccccccCCcccCCCCCC--CEEEcccCCC--cccCCccccCCC----------
Q 040540 131 DYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL--VNLGLWSCNL--QGQIPTEIGSLQ---------- 195 (669)
Q Consensus 131 ~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L--~~L~l~~n~l--~~~~p~~~~~l~---------- 195 (669)
++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9998887 467888889999999999888876 456667777 8899988888 666666665533
Q ss_pred ----------------C---------------------------------------------------------CCEEEc
Q 040540 196 ----------------N---------------------------------------------------------LKNLDL 202 (669)
Q Consensus 196 ----------------~---------------------------------------------------------L~~L~l 202 (669)
+ |++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 2 333333
Q ss_pred cCCCCCCCCCccc-----cCCCCCcEEEcccCCCccccc-hhhhccC---CCCCeeecccCcccccCCccccCCCCCCEE
Q 040540 203 ADNKLSGLIPPTI-----FNISTMRILTLESNQLSGRLP-STIGHSL---RNIEYLALSTNNLIGKIPNSITNATKLIGL 273 (669)
Q Consensus 203 ~~N~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~p-~~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 273 (669)
++|.++|.+|..+ .++++|+.+++++|.+ .+| ..+. .+ .+|+.|++++|.+.... .+..+++|+.|
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY-EIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH-HHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhh-cccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 3333333333333 3333333333333333 222 1111 01 23444444444432211 01455566666
Q ss_pred eCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccc
Q 040540 274 DLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQN 353 (669)
Q Consensus 274 ~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~ 353 (669)
++++|.+.+.+|..+..+++|+.|++++|++++.+. ....+..+++|+.|++++|.+.+.+|.. ....+++
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~ 400 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK------IAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKS 400 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH------HHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTT
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCcccc------chHHHhhCCCCCEEECCCCcCCcccccc---hhccCcc
Confidence 666666666566666666666666666666554210 0122445566666666666666533321 1123455
Q ss_pred cceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcc-cccCCCCCCEEECC
Q 040540 354 IYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLG 432 (669)
Q Consensus 354 l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~l~ 432 (669)
|+.+++++|.+++..|..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|++.. +|. .+..+++|+.|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECc
Confidence 66666666666555544443 45666666666665 455555566666666666666663 333 35666666666666
Q ss_pred CCccee
Q 040540 433 SNKLSS 438 (669)
Q Consensus 433 ~N~l~~ 438 (669)
+|++.+
T Consensus 477 ~N~~~c 482 (520)
T 2z7x_B 477 TNPWDC 482 (520)
T ss_dssp SSCBCC
T ss_pred CCCCcc
Confidence 666654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=349.63 Aligned_cols=379 Identities=24% Similarity=0.248 Sum_probs=238.5
Q ss_pred CEEEEEcCCCCCcccccccccCCCC--CCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSF--LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
.++.|++++|.+.+..|..|..++. |++|++++|.+.+..|..|+.+++|++|++++|++.+..|..|.++++|++|+
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEe
Confidence 4566666666666666666666544 77777777777666666666777777777777777666666677777777777
Q ss_pred ccccCccc-----cCCc----ccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCccc--CCccccCC--CC
Q 040540 130 LDYNNFTG-----PIPN----SLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ--IPTEIGSL--QN 196 (669)
Q Consensus 130 L~~n~l~~-----~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~--~p~~~~~l--~~ 196 (669)
+++|...+ .+|. .+..+++|++|++++|.+.+..|..|.++++|++|++++|.+... .+..|..+ ++
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~ 382 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence 76654432 2222 566667777777777777666666667777777777776654321 12222222 46
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCC
Q 040540 197 LKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLG 276 (669)
Q Consensus 197 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls 276 (669)
|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|...+..+++|++|++++|++.+..+..+..+++|+.|+++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 67777777777766666667777777777777777666654444456677777777777666666666677777777777
Q ss_pred CCCcc--ccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHh----hhhcc
Q 040540 277 FNSFS--GHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIG----NFSAS 350 (669)
Q Consensus 277 ~n~l~--~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~~~~~ 350 (669)
+|.+. +..|..|.++++|+.|++++|++++.+. ..+..+++|+.|++++|.+.+..+..+. .....
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND--------DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCCh--------hhhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 77665 4556666777777777777776665432 2245566677777777766654221110 01233
Q ss_pred ccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCccccc-CCCCCCEE
Q 040540 351 LQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLA-SLTSLREL 429 (669)
Q Consensus 351 l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L 429 (669)
+.+|+.+++++|.+....+..|..+++|+.+++++|.+++..+..|..+.+|+.|++++|++++..|..+. .+++|+.+
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence 55666667777766644444566666677777776766665555566666677777777766665555555 56666777
Q ss_pred ECCCCccee
Q 040540 430 HLGSNKLSS 438 (669)
Q Consensus 430 ~l~~N~l~~ 438 (669)
++++|++..
T Consensus 615 ~l~~N~~~c 623 (680)
T 1ziw_A 615 DMRFNPFDC 623 (680)
T ss_dssp ECTTCCCCB
T ss_pred EccCCCccc
Confidence 777666653
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-37 Score=338.19 Aligned_cols=362 Identities=21% Similarity=0.259 Sum_probs=220.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.+|++++++++ +|..+. ++|++|++++|.+.+..|..|.++++|++|+|++|++++..|+.|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 567777777764 554443 66777777777777666666777777777777777777666667777777777777777
Q ss_pred CccccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCC--CEEEccCCCC--C
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNL--KNLDLADNKL--S 208 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~l~~N~l--~ 208 (669)
+++ .+|.. .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 776 44544 67777777777777665 3456677777777777777776642 23344444 7777777766 5
Q ss_pred CCCCccccCCC---------------------------------------------------------------------
Q 040540 209 GLIPPTIFNIS--------------------------------------------------------------------- 219 (669)
Q Consensus 209 ~~~p~~~~~l~--------------------------------------------------------------------- 219 (669)
+..|..+..+.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 55555544432
Q ss_pred ------------CCcEEEcccCCCccccchhhh----ccC--------------------------CCCCeeecccCccc
Q 040540 220 ------------TMRILTLESNQLSGRLPSTIG----HSL--------------------------RNIEYLALSTNNLI 257 (669)
Q Consensus 220 ------------~L~~L~l~~n~l~~~~p~~~~----~~l--------------------------~~L~~L~ls~n~l~ 257 (669)
+|++|++++|.++|.+|..++ ..+ .+|++|++++|.+.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 333333333333333333221 001 12333333333332
Q ss_pred ccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCc
Q 040540 258 GKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG 337 (669)
Q Consensus 258 ~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 337 (669)
... ....+++|+.|++++|.+.+.+|..+.++++|+.|++++|++++.+. ....+..+++|+.|++++|.+.
T Consensus 345 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 345 HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK------VALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH------HHHTTTTCTTCCEEECTTSCCB
T ss_pred ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc------chhhhcCCCCCCEEECCCCcCC
Confidence 110 01456677777777777777677777777777777777777665321 1123456677777777777776
Q ss_pred cccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCc
Q 040540 338 GILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIP 417 (669)
Q Consensus 338 ~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p 417 (669)
+.+|... ...+.+|+.+++++|.+++..|..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +|
T Consensus 417 ~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~ 489 (562)
T 3a79_B 417 SHAYDRT---CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VP 489 (562)
T ss_dssp SCCSSCC---CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CC
T ss_pred CccChhh---hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CC
Confidence 6443321 12356677777777777665555443 56777777777776 455555577777777777777774 44
Q ss_pred cc-ccCCCCCCEEECCCCcceec
Q 040540 418 PC-LASLTSLRELHLGSNKLSSS 439 (669)
Q Consensus 418 ~~-l~~l~~L~~L~l~~N~l~~~ 439 (669)
.. +..+++|+.|++++|++.+.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCC
T ss_pred HHHHhcCCCCCEEEecCCCcCCC
Confidence 43 67777777777777777643
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-37 Score=353.85 Aligned_cols=372 Identities=22% Similarity=0.235 Sum_probs=286.4
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccC-CccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF-PSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~ 132 (669)
...|.++++++. +|. -.++|++|||++|.+++..|..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 557788888874 444 4578999999999999999999999999999999999766666 78999999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcc--cCCCCCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR--IGNLRKLVNLGLWSCNLQGQIP-TEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~L~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~ 209 (669)
|.+++..|..|+++++|++|++++|.+.+.+|.. ++++++|++|++++|.+++..+ ..|+++++|++|++++|.+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999999999999999999999999999877765 9999999999999999988765 579999999999999999998
Q ss_pred CCCccccCC--CC------------------------------CcEEEcccCCCccccchhhhcc---------------
Q 040540 210 LIPPTIFNI--ST------------------------------MRILTLESNQLSGRLPSTIGHS--------------- 242 (669)
Q Consensus 210 ~~p~~~~~l--~~------------------------------L~~L~l~~n~l~~~~p~~~~~~--------------- 242 (669)
..|..+..+ ++ |+.|++++|.+++.++..+...
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 877776654 44 4555555554444333322211
Q ss_pred ----------------------CCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEcc
Q 040540 243 ----------------------LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVM 300 (669)
Q Consensus 243 ----------------------l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 300 (669)
.++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..|.++++|+.|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 1457777777777777777777888888888888888887777778888888888888
Q ss_pred CCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCC------------
Q 040540 301 MNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI------------ 368 (669)
Q Consensus 301 ~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~------------ 368 (669)
+|.+++... ..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..
T Consensus 323 ~N~l~~~~~--------~~~~~l~~L~~L~L~~N~i~~~~~~~~~----~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 323 YNLLGELYS--------SNFYGLPKVAYIDLQKNHIAIIQDQTFK----FLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390 (844)
T ss_dssp SCCCSCCCS--------CSCSSCTTCCEEECCSCCCCCCCSSCSC----SCCCCCEEEEETCCSCCCSSCCSCSEEEEES
T ss_pred CCCCCccCH--------HHhcCCCCCCEEECCCCCCCccChhhhc----CCCCCCEEECCCCCCCcccCCCCcchhccCC
Confidence 887765422 3466788999999999988776654432 3566777777766654321
Q ss_pred ------Cc----------------------cccccCCCcEEecCCCccccc-----------------------------
Q 040540 369 ------PT----------------------SIGTLQQLQGFYVPENNLQGY----------------------------- 391 (669)
Q Consensus 369 ------~~----------------------~~~~l~~L~~l~l~~n~~~~~----------------------------- 391 (669)
|. .+..+++|+.|++++|.+.+.
T Consensus 391 N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp CCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC
T ss_pred CCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccc
Confidence 00 022455666666666665532
Q ss_pred -CchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCC
Q 040540 392 -VPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIP 441 (669)
Q Consensus 392 -~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 441 (669)
.+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccCh
Confidence 22335567788888888888888888888889999999999999886444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=337.35 Aligned_cols=366 Identities=20% Similarity=0.239 Sum_probs=282.4
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
.|.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++.+..|+.|+++++|++|+|++|++
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 799999997 5665554 7999999999999998899999999999999999999988889999999999999999999
Q ss_pred cccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCCCCCCCCc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIP-TEIGSLQNLKNLDLADNKLSGLIPP 213 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~ 213 (669)
++..|..++++++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+| ..|+.+++|++|++++|.+++..|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 98888889999999999999999987 467889999999999999999555554 6899999999999999999999999
Q ss_pred cccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC--Ccc-cc-------------------------
Q 040540 214 TIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI--PNS-IT------------------------- 265 (669)
Q Consensus 214 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~--p~~-~~------------------------- 265 (669)
.+..+++|++|+++.|.+. .+|..+...+++|++|++++|++.+.. |.. ..
T Consensus 167 ~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 9998888888888888774 566666556778888888888776531 100 00
Q ss_pred --------------------------------------------------------------CCCCCCEEeCCCCCcccc
Q 040540 266 --------------------------------------------------------------NATKLIGLDLGFNSFSGH 283 (669)
Q Consensus 266 --------------------------------------------------------------~l~~L~~L~ls~n~l~~~ 283 (669)
...+|+.|++++|.+. .
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ 324 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-C
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-c
Confidence 0123555555555554 3
Q ss_pred Ccccc-CCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCc
Q 040540 284 IPNTF-GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFN 362 (669)
Q Consensus 284 ~p~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n 362 (669)
+|..+ ..+++|+.|++++|++++... .....+..+++|+.|++++|.+.+..+. +.....+++|+.+++++|
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYL-----KNSACKGAWPSLQTLVLSQNHLRSMQKT--GEILLTLKNLTSLDISRN 397 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHH-----HHHTCTTSSTTCCEEECTTSCCCCHHHH--HHHGGGCTTCCEEECTTC
T ss_pred CCHHHHhcCccccEEEccCCccccccc-----cchhhhhccccCcEEEccCCcccccccc--hhhhhcCCCCCEEECCCC
Confidence 44443 468899999999998865310 0012356678899999999988764321 111235778889999999
Q ss_pred ccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCc
Q 040540 363 DLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPS 442 (669)
Q Consensus 363 ~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 442 (669)
.++ .+|..+..+++|+.|++++|.+... |..+ ..+|+.|++++|++++.. ..+++|++|++++|++. .+|.
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC
T ss_pred CCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC
Confidence 888 5677788888899999998887743 3322 257778888888777542 45677788888888776 5554
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=333.00 Aligned_cols=371 Identities=20% Similarity=0.224 Sum_probs=276.2
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccC
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 134 (669)
.++.++.++. .+|..+. +++++||+++|.+++..+..|.++++|++|+|++|++.+..|..|+++++|++|+|++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 4666666665 4554443 579999999999998888899999999999999999998888899999999999999999
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc-cCCccccCCCCCCEEEccCCCCCCCCCc
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG-QIPTEIGSLQNLKNLDLADNKLSGLIPP 213 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 213 (669)
+++..|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 998888999999999999999999987777689999999999999999987 5799999999999999999999998888
Q ss_pred cccCCCCC----cEEEcccCCCccccchhh--------------------------------------------------
Q 040540 214 TIFNISTM----RILTLESNQLSGRLPSTI-------------------------------------------------- 239 (669)
Q Consensus 214 ~~~~l~~L----~~L~l~~n~l~~~~p~~~-------------------------------------------------- 239 (669)
.+..+++| ..+++++|.+++..|..+
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 88888888 788888887764332211
Q ss_pred ------------------------------hccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCcc-cc
Q 040540 240 ------------------------------GHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPN-TF 288 (669)
Q Consensus 240 ------------------------------~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~ 288 (669)
+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. .+
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l 324 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKL 324 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBC
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccc
Confidence 113466777777777765 466666666 6677777666665 2222 11
Q ss_pred -------------------CCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhc
Q 040540 289 -------------------GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSA 349 (669)
Q Consensus 289 -------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 349 (669)
..+++|+.|++++|+++.... ....+..+++|+.|++++|.+.+..+. + .
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~-~----~ 393 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVITMSSN-F----L 393 (570)
T ss_dssp SSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE------EEHHHHTCSCCCEEECCSCSEEEEEEE-E----E
T ss_pred cccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc------ccccccccCccCEEECCCCcccccccc-c----c
Confidence 456788888888888765421 012345667777777777776654432 2 2
Q ss_pred cccccceEeecCcccCCCCC-ccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccc-eeCcccccCCCCCC
Q 040540 350 SLQNIYAFELGFNDLNGTIP-TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS-GHIPPCLASLTSLR 427 (669)
Q Consensus 350 ~l~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~-~~~p~~l~~l~~L~ 427 (669)
.+++|+.+++++|.+.+..+ ..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+. +.+|..+..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 35566667777666665544 34566666777777776666666666666666777777777665 45666666666777
Q ss_pred EEECCCCcceecCCc
Q 040540 428 ELHLGSNKLSSSIPS 442 (669)
Q Consensus 428 ~L~l~~N~l~~~~p~ 442 (669)
.|++++|++.+..|.
T Consensus 474 ~L~l~~n~l~~~~~~ 488 (570)
T 2z63_A 474 FLDLSQCQLEQLSPT 488 (570)
T ss_dssp EEECTTSCCCEECTT
T ss_pred EEECCCCccccCChh
Confidence 777777666655443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=334.19 Aligned_cols=381 Identities=22% Similarity=0.216 Sum_probs=277.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|||++|.|++..+.+|.++++|++|||++|.|++..|.+|.++++|++|+|++|++.+..+..|+++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 57899999999999888889999999999999999999888889999999999999999999777788999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCC----EEEccCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK----NLDLADN 205 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~l~~N 205 (669)
++|++++..+..|+++++|++|++++|.+.+ .+|..++.+++|++|++++|++++..|..+..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999998777889999999999999999976 5788999999999999999999988777665443322 3444444
Q ss_pred CCCCCCCc------------------------------------------------------------------------
Q 040540 206 KLSGLIPP------------------------------------------------------------------------ 213 (669)
Q Consensus 206 ~l~~~~p~------------------------------------------------------------------------ 213 (669)
.++...+.
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 33211100
Q ss_pred -------------------------------cccCCCCCcEEEcccCCCccccchhh------------------hccCC
Q 040540 214 -------------------------------TIFNISTMRILTLESNQLSGRLPSTI------------------GHSLR 244 (669)
Q Consensus 214 -------------------------------~~~~l~~L~~L~l~~n~l~~~~p~~~------------------~~~l~ 244 (669)
.+....+++.|++.+|.+.+..+..+ ...++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 01122344555555554432111000 01367
Q ss_pred CCCeeecccCcccc--cCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCC
Q 040540 245 NIEYLALSTNNLIG--KIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTN 322 (669)
Q Consensus 245 ~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~ 322 (669)
+|+.|++++|.+.. ..+..+..+.+|+.++++.|.... .+..+..+++|+.+++..++...... ...+..
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~-------~~~~~~ 443 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLS 443 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS-------SCTTTT
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccc-------cccccc
Confidence 88899999888743 345566677888888888887764 34456778888888887776654321 123456
Q ss_pred CCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccC-CCCCccccccCCCcEEecCCCcccccCchhhcCCCC
Q 040540 323 CRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN-GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLER 401 (669)
Q Consensus 323 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~ 401 (669)
+++++.++++.|.+.+..+..+. .+..++.+++++|.+. +..|..+..+++|+.|++++|.+++..|..|.++++
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccccccccccccccccccccccc----cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 67777777777777766554432 2456667777776533 345666777777777777777777777777777777
Q ss_pred CCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCcc
Q 040540 402 LNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 402 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
|++|++++|++.+..|..++.+++|+.|++++|++++..|..
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 777777777777666666777777777777777777655543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=330.88 Aligned_cols=340 Identities=19% Similarity=0.235 Sum_probs=292.4
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCc-cCCccccCCcccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG-SFPSWIGVLSKLRIL 128 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L 128 (669)
..+++.|++++|.+++..|..|+++++|++|||++|.++ .+|.. .+++|++|+|++|++.+ .+|..|+++++|++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 467999999999999998999999999999999999998 45655 89999999999999987 578999999999999
Q ss_pred cccccCccccCCcccCCCCCC--Ceeecccccc--cccCCcccCCCC---------------------------------
Q 040540 129 RLDYNNFTGPIPNSLFNLSRL--EMLRAEFNII--GGTIPSRIGNLR--------------------------------- 171 (669)
Q Consensus 129 ~L~~n~l~~~~p~~~~~l~~L--~~L~l~~n~l--~~~~p~~~~~L~--------------------------------- 171 (669)
+|++|.+++ ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 121 ~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 121 GLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp EEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred EecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 999999986 457777888 9999999999 777777776644
Q ss_pred --------------------------------------------------CCCEEEcccCCCcccCCccc-----cCCCC
Q 040540 172 --------------------------------------------------KLVNLGLWSCNLQGQIPTEI-----GSLQN 196 (669)
Q Consensus 172 --------------------------------------------------~L~~L~l~~n~l~~~~p~~~-----~~l~~ 196 (669)
+|++|++++|++++.+|..+ +.+++
T Consensus 198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277 (520)
T ss_dssp EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence 78888999999998999988 89999
Q ss_pred CCEEEccCCCCCCCCC-ccccCC---CCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCE
Q 040540 197 LKNLDLADNKLSGLIP-PTIFNI---STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIG 272 (669)
Q Consensus 197 L~~L~l~~N~l~~~~p-~~~~~l---~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 272 (669)
|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+ ++ +...+++|++|++++|++.+..|..+..+++|+.
T Consensus 278 L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 352 (520)
T 2z7x_B 278 LSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352 (520)
T ss_dssp EEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred eEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence 99999999999 456 555555 789999999999863 22 1136889999999999999989999999999999
Q ss_pred EeCCCCCccc--cCccccCCCCCCCEEEccCCcccc-CCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhc
Q 040540 273 LDLGFNSFSG--HIPNTFGNLRHLSVLNVMMNNLTT-ESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSA 349 (669)
Q Consensus 273 L~ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 349 (669)
|++++|.+.+ .+|..+..+++|+.|++++|.+.+ .+. ..+..+++|+.|++++|.+.+..|..+
T Consensus 353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l----- 419 (520)
T 2z7x_B 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--------GDCSWTKSLLSLNMSSNILTDTIFRCL----- 419 (520)
T ss_dssp EECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG--------CSCCCCTTCCEEECCSSCCCGGGGGSC-----
T ss_pred EEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc--------chhccCccCCEEECcCCCCCcchhhhh-----
Confidence 9999999986 566789999999999999999987 421 235677899999999999987665432
Q ss_pred cccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCcccee
Q 040540 350 SLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGH 415 (669)
Q Consensus 350 ~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~ 415 (669)
..+|+.+++++|.++ .+|..+..+++|+.+++++|.++...+..+..+++|+.|++++|.+.+.
T Consensus 420 -~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 420 -PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp -CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 167999999999999 6788778999999999999999964444488999999999999999764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=315.86 Aligned_cols=355 Identities=21% Similarity=0.254 Sum_probs=279.4
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccC-CccccCCcccccccccccC
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF-PSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~ 134 (669)
++.+++++. .+|. + .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|+|++|+
T Consensus 15 ~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 555556664 3444 2 278999999999999988999999999999999999997655 5789999999999999999
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcc--cCCCCCCCEEEcccCCCcccCCcc-ccCCCCCCEEEccCCCCCCCC
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR--IGNLRKLVNLGLWSCNLQGQIPTE-IGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~L~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+++..|..++++++|++|++++|.+.+..|.. ++++++|++|++++|.+.+..|.. +..+++|++|++++|.+++..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 99888999999999999999999998866555 899999999999999999887776 788999999999999999888
Q ss_pred CccccCC--CCCcEEEcccCCCccccchhhh-------ccCCCCCeeecccCcccccCCccccCC---CCCCEEeCCCCC
Q 040540 212 PPTIFNI--STMRILTLESNQLSGRLPSTIG-------HSLRNIEYLALSTNNLIGKIPNSITNA---TKLIGLDLGFNS 279 (669)
Q Consensus 212 p~~~~~l--~~L~~L~l~~n~l~~~~p~~~~-------~~l~~L~~L~ls~n~l~~~~p~~~~~l---~~L~~L~ls~n~ 279 (669)
|..+..+ .+++.|++++|.+.+..+..+. ..+++|++|++++|++.+..|..+... ++|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 8887776 5778888888887643222111 123556666666666665555544332 555666666555
Q ss_pred ccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEee
Q 040540 280 FSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFEL 359 (669)
Q Consensus 280 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l 359 (669)
..+.... .+.+....... +. -...++|+.|++++|.+.+..|..+. .+++|+.+++
T Consensus 251 ~~~~~~~--------------~~~~~~~~~~~-----~~-~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L 306 (455)
T 3v47_A 251 NMGSSFG--------------HTNFKDPDNFT-----FK-GLEASGVKTCDLSKSKIFALLKSVFS----HFTDLEQLTL 306 (455)
T ss_dssp TTSCCTT--------------CCSSCCCCTTT-----TG-GGTTSCCCEEECCSSCCCEECTTTTT----TCTTCCEEEC
T ss_pred ccccccc--------------hhhhccCcccc-----cc-cccccCceEEEecCccccccchhhcc----cCCCCCEEEC
Confidence 4332110 01111110000 00 11347899999999999988777654 3678999999
Q ss_pred cCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 360 GFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 360 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|++|++++|++.+
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 9999999889999999999999999999999889999999999999999999999999999999999999999999985
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=309.11 Aligned_cols=198 Identities=22% Similarity=0.361 Sum_probs=154.9
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.|.+|+.++++++|||||+++++|.. +..+||||||++|+|.++|+.....++|.++..|+.|+|+||+|||.
T Consensus 76 ~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~---- 150 (307)
T 3omv_A 76 FQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHA---- 150 (307)
T ss_dssp HHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 4568899999999999999999998865 45789999999999999998766789999999999999999999995
Q ss_pred CCeeecCCCCcc---------------------------cccccccccccCccccccC---CCcCccccchhhHHHHHHH
Q 040540 526 APIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 526 ~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gvil~el 575 (669)
.+|||||+|+.. .....+||+.|||||++.+ +.|+.|+|||||||++|||
T Consensus 151 ~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~El 230 (307)
T 3omv_A 151 KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 230 (307)
T ss_dssp TTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHH
Confidence 479999999540 1122369999999999853 4589999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+||+.||..... ...+...+...... +.+.. .+.+++..+.+++.+||+.||++||||.||++.|+
T Consensus 231 ltg~~Pf~~~~~-~~~~~~~~~~~~~~-------p~~~~------~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le 296 (307)
T 3omv_A 231 MTGELPYSHINN-RDQIIFMVGRGYAS-------PDLSK------LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 296 (307)
T ss_dssp HHSSCTTTTCCC-HHHHHHHHHTTCCC-------CCSTT------SCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHH
T ss_pred HHCCCCCCCCCh-HHHHHHHHhcCCCC-------CCccc------ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 999999976321 11222222222111 11110 12234567889999999999999999999999999
Q ss_pred HhHHHhh
Q 040540 656 KIKVKFL 662 (669)
Q Consensus 656 ~~~~~~~ 662 (669)
.++..++
T Consensus 297 ~l~~~lp 303 (307)
T 3omv_A 297 LLQHSLP 303 (307)
T ss_dssp HHHTTCC
T ss_pred HHhccCC
Confidence 8876543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=307.14 Aligned_cols=344 Identities=28% Similarity=0.434 Sum_probs=297.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|+++++++.. +| .+..+++|++|++++|.+.+..| +.++++|++|++++|++.+..| ++++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 468999999999875 44 48899999999999999987654 9999999999999999986554 999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.+++..+ +.++++|++|++++|.+.+. + .++.+++|++|+++ |.+.+..+ +..+++|++|++++|.+++.
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCC
Confidence 9999986543 89999999999999998863 3 58999999999996 55554433 89999999999999999864
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
..+..+++|++|++++|.+++..| +. .+++|++|++++|++.+. ..+..+++|+.|++++|.+.+..+ +..
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred --hhhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 458899999999999999986555 33 589999999999998764 468889999999999999987655 889
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 370 (669)
+++|+.|++++|.+++.+ .+..+++|+.|++++|.+.+..+ + ..+++|+.+++++|.+.+..|
T Consensus 264 l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~~~~--~----~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS----------PLAGLTALTNLELNENQLEDISP--I----SNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCSCCGG--G----GGCTTCSEEECCSSCCSCCGG-
T ss_pred CCCCCEEECCCCccCccc----------cccCCCccCeEEcCCCcccCchh--h----cCCCCCCEEECcCCcCCCchh-
Confidence 999999999999987642 26678999999999999987654 2 347889999999999998766
Q ss_pred cccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 371 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
+..+++|+.+++++|.+.+. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|++.+
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 78899999999999999876 468899999999999999998776 7899999999999999986
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=323.17 Aligned_cols=343 Identities=19% Similarity=0.228 Sum_probs=285.1
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57999999999999888889999999999999999999999999999999999999999998 57766 8999999999
Q ss_pred cccCccc-cCCcccCCCCCCCeeecccccccccCCcccCCCCCC--CEEEcccCCC--cccCCccccCCC----------
Q 040540 131 DYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL--VNLGLWSCNL--QGQIPTEIGSLQ---------- 195 (669)
Q Consensus 131 ~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L--~~L~l~~n~l--~~~~p~~~~~l~---------- 195 (669)
++|++++ ..|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999997 4578999999999999999998764 34555555 9999999998 777776665543
Q ss_pred -----------------------------------------------------------------------CCCEEEccC
Q 040540 196 -----------------------------------------------------------------------NLKNLDLAD 204 (669)
Q Consensus 196 -----------------------------------------------------------------------~L~~L~l~~ 204 (669)
+|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 678888888
Q ss_pred CCCCCCCCccc-----cCCC--------------------------CCcEEEcccCCCccccchhhhccCCCCCeeeccc
Q 040540 205 NKLSGLIPPTI-----FNIS--------------------------TMRILTLESNQLSGRLPSTIGHSLRNIEYLALST 253 (669)
Q Consensus 205 N~l~~~~p~~~-----~~l~--------------------------~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~ 253 (669)
|.++|.+|..+ .+++ +|+.|++++|.+.. ++ +...+++|++|++++
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH-MV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc-cc--CccCCCCceEEECCC
Confidence 88888888876 3333 35566666665532 11 113688999999999
Q ss_pred CcccccCCccccCCCCCCEEeCCCCCcccc--CccccCCCCCCCEEEccCCcccc-CCCCCcccccccccCCCCCCCEEE
Q 040540 254 NNLIGKIPNSITNATKLIGLDLGFNSFSGH--IPNTFGNLRHLSVLNVMMNNLTT-ESSSADQWSFLSSLTNCRNLSNLA 330 (669)
Q Consensus 254 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~l~~l~~L~~L~ 330 (669)
|++.+..|..+..+++|+.|++++|.+.+. +|..|.++++|+.|++++|++++ .+. ..+..+++|+.|+
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--------~~~~~l~~L~~L~ 434 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD--------RTCAWAESILVLN 434 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS--------CCCCCCTTCCEEE
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh--------hhhcCcccCCEEE
Confidence 999999999999999999999999999873 45678999999999999999987 432 2356778999999
Q ss_pred CcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCC
Q 040540 331 LASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGN 410 (669)
Q Consensus 331 l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n 410 (669)
+++|.+.+..|..+ ..+|+.+++++|.++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 435 l~~n~l~~~~~~~l------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 435 LSSNMLTGSVFRCL------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCSSCCCGGGGSSC------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCCCCCCcchhhhh------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 99999987655322 157999999999998 56776779999999999999999544444889999999999999
Q ss_pred ccceeCc
Q 040540 411 KLSGHIP 417 (669)
Q Consensus 411 ~l~~~~p 417 (669)
.+.+..+
T Consensus 508 ~~~c~c~ 514 (562)
T 3a79_B 508 PWDCTCP 514 (562)
T ss_dssp CBCCCHH
T ss_pred CcCCCcc
Confidence 9876443
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=305.24 Aligned_cols=192 Identities=24% Similarity=0.399 Sum_probs=157.2
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC------------CCccCHHHHHHHHHhHH
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH------------NYFLDILERLNIMIDVG 513 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~------------~~~l~~~~~~~i~~~i~ 513 (669)
.+.|.+|+.++++++|||||+++++|..++..++|||||++|+|.++|+.. ...++|.++..|+.|+|
T Consensus 59 ~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia 138 (299)
T 4asz_A 59 RKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIA 138 (299)
T ss_dssp HHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999753 24689999999999999
Q ss_pred hhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccch
Q 040540 514 SALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 514 ~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
+||+|||. .+|+|||+|+.. ......||+.|||||++.+..|+.|+|||
T Consensus 139 ~gl~yLH~----~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVw 214 (299)
T 4asz_A 139 AGMVYLAS----QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW 214 (299)
T ss_dssp HHHHHHHH----TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHh----CCcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHH
Confidence 99999995 479999999530 01123589999999999999999999999
Q ss_pred hhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
||||++|||+| |+.||.... ...+...+...... +.+..++.++.+++.+||+.||++||
T Consensus 215 S~Gvvl~Ellt~G~~Pf~~~~--~~~~~~~i~~~~~~-----------------~~p~~~~~~~~~li~~cl~~dP~~RP 275 (299)
T 4asz_A 215 SLGVVLWEIFTYGKQPWYQLS--NNEVIECITQGRVL-----------------QRPRTCPQEVYELMLGCWQREPHMRK 275 (299)
T ss_dssp HHHHHHHHHHTTTCCTTTTSC--HHHHHHHHHHTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred HHHHHHHHHHcCCCCCCCCCC--HHHHHHHHHcCCCC-----------------CCCccchHHHHHHHHHHcCCChhHCc
Confidence 99999999999 899997642 22233333332111 11223445688999999999999999
Q ss_pred CHHHHHHHHHHhHHH
Q 040540 646 HMTDAAAKLKKIKVK 660 (669)
Q Consensus 646 s~~~v~~~l~~~~~~ 660 (669)
||+||.+.|+++...
T Consensus 276 s~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 276 NIKGIHTLLQNLAKA 290 (299)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988654
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=307.17 Aligned_cols=192 Identities=23% Similarity=0.391 Sum_probs=156.6
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC--------------CccCHHHHHHHHHh
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--------------YFLDILERLNIMID 511 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~l~~~~~~~i~~~ 511 (669)
.+.|.+|+.++++++|||||+++++|......+||||||++|+|.++++... .+++|.++.+|+.|
T Consensus 87 ~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~q 166 (329)
T 4aoj_A 87 RQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQ 166 (329)
T ss_dssp HHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999997532 35899999999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
+|+||+|||. .+|||||+|+.. ......||+.|||||++.+..|+.|+|
T Consensus 167 ia~gl~yLH~----~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sD 242 (329)
T 4aoj_A 167 VAAGMVYLAG----LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESD 242 (329)
T ss_dssp HHHHHHHHHH----TTCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHH
T ss_pred HHHHHHHHhc----CCeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCcccc
Confidence 9999999995 479999999530 012235899999999999999999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||++|||+| |+.||.... ...+...+....+. +.+..++.++.+++.+||+.||++
T Consensus 243 vwS~Gvvl~Ellt~G~~Pf~~~~--~~~~~~~i~~g~~~-----------------~~p~~~~~~~~~li~~cl~~dP~~ 303 (329)
T 4aoj_A 243 VWSFGVVLWEIFTYGKQPWYQLS--NTEAIDCITQGREL-----------------ERPRACPPEVYAIMRGCWQREPQQ 303 (329)
T ss_dssp HHHHHHHHHHHHTTSCCTTCSSC--HHHHHHHHHHTCCC-----------------CCCTTCCHHHHHHHHHHCCSSTTT
T ss_pred ccchHHHHHHHHcCCCCCCCCCC--HHHHHHHHHcCCCC-----------------CCcccccHHHHHHHHHHcCcChhH
Confidence 9999999999999 899997642 22233333332111 112234456889999999999999
Q ss_pred CCCHHHHHHHHHHhHHH
Q 040540 644 RMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~ 660 (669)
||||+||++.|+.+.+.
T Consensus 304 RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 304 RHSIKDVHARLQALAQA 320 (329)
T ss_dssp SCCHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhhC
Confidence 99999999999998764
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=305.12 Aligned_cols=188 Identities=20% Similarity=0.382 Sum_probs=154.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC---------------CCccCHHHHHHHHHh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---------------NYFLDILERLNIMID 511 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---------------~~~l~~~~~~~i~~~ 511 (669)
+.|.+|+.++++++|||||+++|+|..+...++|||||++|+|.++|+.+ ...++|.++.+|+.|
T Consensus 74 ~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~q 153 (308)
T 4gt4_A 74 EEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQ 153 (308)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999642 235899999999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
||+||+|||. .+|||||+|+.. ......||+.|||||++.++.|+.|+|
T Consensus 154 ia~gl~yLH~----~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksD 229 (308)
T 4gt4_A 154 IAAGMEYLSS----HHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSD 229 (308)
T ss_dssp HHHHHHHHHH----TTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHh----CCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccch
Confidence 9999999995 479999999430 112235899999999999999999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||++|||+| |+.||.+.. ...+...+..... .+.+.+++..+.+++.+||+.||++
T Consensus 230 VwSfGvvl~El~t~g~~Pf~~~~--~~~~~~~i~~~~~-----------------~~~p~~~~~~~~~li~~C~~~dP~~ 290 (308)
T 4gt4_A 230 IWSYGVVLWEVFSYGLQPYCGYS--NQDVVEMIRNRQV-----------------LPCPDDCPAWVYALMIECWNEFPSR 290 (308)
T ss_dssp HHHHHHHHHHHHTTTCCTTTTCC--HHHHHHHHHTTCC-----------------CCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred hhhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCC-----------------CCCcccchHHHHHHHHHHcCCChhH
Confidence 9999999999999 899997642 2233333332211 1113345567889999999999999
Q ss_pred CCCHHHHHHHHHHh
Q 040540 644 RMHMTDAAAKLKKI 657 (669)
Q Consensus 644 Rps~~~v~~~l~~~ 657 (669)
||||+||++.|+..
T Consensus 291 RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 291 RPRFKDIHSRLRAW 304 (308)
T ss_dssp SCCHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHhc
Confidence 99999999999865
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-34 Score=320.00 Aligned_cols=373 Identities=21% Similarity=0.186 Sum_probs=295.4
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
.+-++.+++ .+|..+. +++++|||++|.|++..|..|.++++|++|+|++|+|++..|..|+++++|++|+|++|++
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 455666665 4565442 4799999999999988888999999999999999999988888999999999999999999
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc-cCCccccCCCCCCEEEccCCCCCCCCCcc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG-QIPTEIGSLQNLKNLDLADNKLSGLIPPT 214 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 214 (669)
++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|.+++..|..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 98777889999999999999999998888889999999999999999976 46888999999999999999999988887
Q ss_pred ccCCCCCc----EEEcccCCCccc-----------------------cchhh----------------------------
Q 040540 215 IFNISTMR----ILTLESNQLSGR-----------------------LPSTI---------------------------- 239 (669)
Q Consensus 215 ~~~l~~L~----~L~l~~n~l~~~-----------------------~p~~~---------------------------- 239 (669)
+..+.+++ .++++.|.+... ++...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 76544332 344444433210 00000
Q ss_pred ---------------------------------------------------hccCCCCCeeecccCcccccCCc------
Q 040540 240 ---------------------------------------------------GHSLRNIEYLALSTNNLIGKIPN------ 262 (669)
Q Consensus 240 ---------------------------------------------------~~~l~~L~~L~ls~n~l~~~~p~------ 262 (669)
......++.|++++|.+.+..+.
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~ 352 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 352 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCC
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhh
Confidence 00122455666666655433221
Q ss_pred -------------cccCCCCCCEEeCCCCCccc--cCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCC
Q 040540 263 -------------SITNATKLIGLDLGFNSFSG--HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLS 327 (669)
Q Consensus 263 -------------~~~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~ 327 (669)
....+++|+.++++.|.+.. ..+..+..+.+|+.+++..|...... ..+..+++|+
T Consensus 353 ~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~---------~~~~~l~~L~ 423 (635)
T 4g8a_A 353 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS---------SNFLGLEQLE 423 (635)
T ss_dssp EEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC---------SCCTTCTTCC
T ss_pred hcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc---------cccccccccc
Confidence 22356789999999998753 45566778889999999888765542 3356788999
Q ss_pred EEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCccc-ccCchhhcCCCCCCeee
Q 040540 328 NLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ-GYVPHDLCHLERLNILN 406 (669)
Q Consensus 328 ~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~-~~~p~~~~~l~~L~~L~ 406 (669)
.+++..+......+.. .+..+..+..++++.|.+.+..+..+..++.++.+++++|.+. +..|..+..+++|+.|+
T Consensus 424 ~l~l~~~~~~~~~~~~---~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp EEECTTSEEESTTSSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred chhhhhcccccccccc---ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 9999988776554322 1235778899999999999999999999999999999999754 45778899999999999
Q ss_pred CcCCccceeCcccccCCCCCCEEECCCCcceecCCcc
Q 040540 407 LSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 407 ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
+++|++.+..|..|+.+++|++|++++|++.+..|..
T Consensus 501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 537 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence 9999999999999999999999999999998765543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=301.80 Aligned_cols=349 Identities=17% Similarity=0.224 Sum_probs=279.0
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|++.+. | ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 5789999999999975 4 799999999999999999974 4 89999999999999999974 4 899999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|++++ +| ++.+++|++|++++|.+++. + ++.+++|++|++++|...+.+ .++.+++|++|++++|.+++.
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 9999997 44 89999999999999999874 3 889999999999999776666 488999999999999999984
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
| +..+++|+.|++++|.+++. + +. .+++|++|++++|++.+ +| +..+++|+.|++++|.+.+.. +..
T Consensus 186 -~--l~~l~~L~~L~l~~N~l~~~-~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 186 -D--VSQNKLLNRLNCDTNNITKL-D--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp -C--CTTCTTCCEEECCSSCCSCC-C--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred -c--cccCCCCCEEECcCCcCCee-c--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 4 88999999999999999864 3 43 68999999999999988 55 889999999999999999764 456
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh----hccccccceEeecCcccCC
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF----SASLQNIYAFELGFNDLNG 366 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~l~~l~~l~l~~n~l~~ 366 (669)
+++|+.|+++.|+++...-........-....+++|+.|++++|...+.+|...... ....++|+.+++++|.+++
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 677888888877776553322211111124678999999999998877666422111 1223567777788888777
Q ss_pred CCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCccc
Q 040540 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444 (669)
Q Consensus 367 ~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 444 (669)
. .+..+++|+.+++++|.+++ ++.|..|++++|.+.|. +.+..|..+++++|+++|.+|..+
T Consensus 333 l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 333 L---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred c---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 3 26777778888888887765 24566667777777765 245578888999999999999754
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=307.56 Aligned_cols=302 Identities=18% Similarity=0.178 Sum_probs=165.4
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 75 SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
+++++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 35566666666666555555666666666666666666555566666666666666666665444445556666666666
Q ss_pred ccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccc
Q 040540 155 EFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGR 234 (669)
Q Consensus 155 ~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (669)
++|.+.+..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 66666655555666666666666666666655555566666666666666666555445555566666666666655532
Q ss_pred cchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCccc
Q 040540 235 LPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314 (669)
Q Consensus 235 ~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 314 (669)
.+..+ ..+++|++|++++|...+.+|.......+|+.|++++|.+.+..+..|..+++|+.|++++|.+++...
T Consensus 192 ~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----- 265 (477)
T 2id5_A 192 RDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----- 265 (477)
T ss_dssp CTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT-----
T ss_pred Chhhc-ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh-----
Confidence 22222 245556666666555555555544444556666666665554333455555666666666555544321
Q ss_pred ccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCccc
Q 040540 315 SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ 389 (669)
Q Consensus 315 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~ 389 (669)
..+..+++|+.|++++|.+.+..+..+. .+++|+.+++++|.+++..+..|..+++|+.+++++|.+.
T Consensus 266 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 266 ---SMLHELLRLQEIQLVGGQLAVVEPYAFR----GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ---TSCTTCTTCCEEECCSSCCSEECTTTBT----TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ---hhccccccCCEEECCCCccceECHHHhc----CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 1234445555555555555444333221 1334444444444444433344444455555555555544
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=307.97 Aligned_cols=304 Identities=18% Similarity=0.171 Sum_probs=277.1
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|+|++|++.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++.+..+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999999988889999999999999999999999999999999999999999999766778999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|++++..|..+.++++|+.|++++|.+.+..|..|.++++|++|++++|++++..+..+..+++|+.|++++|.+++.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999999999999999999999999999999999999999999999999999987778899999999999999999998
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
.+..+..+++|+.|++++|...+.+|...+ ...+|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..|..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 888999999999999999998888888776 3569999999999998665578899999999999999999888888999
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCC
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGT 367 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~ 367 (669)
+++|+.|++++|++++... ..+..+++|+.|++++|.+++..+..+ ..+.+|+.+++++|.+...
T Consensus 271 l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEP--------YAFRGLNYLRVLNVSGNQLTTLEESVF----HSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECT--------TTBTTCTTCCEEECCSSCCSCCCGGGB----SCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECH--------HHhcCcccCCEEECCCCcCceeCHhHc----CCCcccCEEEccCCCccCc
Confidence 9999999999999987632 346788999999999999997665543 3467899999999998754
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=295.84 Aligned_cols=278 Identities=23% Similarity=0.292 Sum_probs=183.6
Q ss_pred CCChhhHHHHHHHHhhc-CCCcccccCCC----CCCCCCCCccceeeCC--------CCCCEEEEEcCCCCCcccccccc
Q 040540 5 NDLTTDQSSLLAFKAHA-FDYRSALANNW----SISYPICSWAGISCGS--------RHQRVTALNLSDMGLGGTIPLHF 71 (669)
Q Consensus 5 ~~~~~~~~~l~~~~~~~-~~~~~~l~~~w----~~~~~~c~~~g~~c~~--------~~~~v~~L~ls~~~l~~~~~~~~ 71 (669)
.+..+|++||++||.++ .++.+.+.. | ....++|.|.|+.|.. ...+|+.|++++|++. .+|..+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 35667899999999988 456555554 8 3456799999999842 2467899999999987 777788
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
+.+++|++|+|++|.+. .+|..++.+++|++|+|++|++. .+|..++++++|++|+|++|++.+.+|..++..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~----- 173 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST----- 173 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-----
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-----
Confidence 88999999999999988 78888889999999999999988 778888999999999999988888888776540
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
..+..+.++++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|.+
T Consensus 174 ----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 174 ----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp ----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTT
T ss_pred ----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcc
Confidence 01122333444444444444444 444444445555555555555543 333444555555555555554
Q ss_pred ccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcc
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l 304 (669)
.+.+|..+. .+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 242 ~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 242 LRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 444444443 355555555555555555555555555566666666555555666666666666666554433
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=302.22 Aligned_cols=335 Identities=23% Similarity=0.295 Sum_probs=163.5
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCC-------------CEEEccCCcCCccCCcc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRL-------------RVMSLAYNKLSGSFPSW 118 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------------~~L~L~~n~l~~~~p~~ 118 (669)
+++.|++++|.+ |.+|.+++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 456666666666 5666666666666666666666666666666655543 556666555553 2321
Q ss_pred ccCCcccccccccccCccccCCccc----------------CCC-CCCCeeecccccccccCCcccCCCCCCCEEEcccC
Q 040540 119 IGVLSKLRILRLDYNNFTGPIPNSL----------------FNL-SRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSC 181 (669)
Q Consensus 119 ~~~l~~L~~L~L~~n~l~~~~p~~~----------------~~l-~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n 181 (669)
.++|++|++++|.+++ +|..+ ..+ ++|++|++++|.+.+ +| .++++++|++|++++|
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred ---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 2445555555555554 33221 011 345555555555543 44 3555555555555555
Q ss_pred CCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCC
Q 040540 182 NLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIP 261 (669)
Q Consensus 182 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p 261 (669)
++++ +|..+ .+|++|++++|.+++ +| .+.++++|+.|++++|.+++ +|.. ..+|++|++++|++. .+|
T Consensus 164 ~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 164 SLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp CCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC
T ss_pred cCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc
Confidence 5543 33322 345555555555554 23 35555555555555555542 3321 234555555555554 334
Q ss_pred ccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccc
Q 040540 262 NSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP 341 (669)
Q Consensus 262 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 341 (669)
.+..+++|+.|++++|.+.+ +|.. .++|+.|++++|++++.+. ..++|+.|++++|.+.+..
T Consensus 232 -~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~------------~~~~L~~L~ls~N~l~~l~- 293 (454)
T 1jl5_A 232 -ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPE------------LPQSLTFLDVSENIFSGLS- 293 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSEES-
T ss_pred -ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCc------------ccCcCCEEECcCCccCccc-
Confidence 25555555555555555543 2221 2455555555555544321 1245666666666666521
Q ss_pred hhHhhhhccccccceEeecCcccCCCCCcccccc-CCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccc
Q 040540 342 QLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTL-QQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCL 420 (669)
Q Consensus 342 ~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l-~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l 420 (669)
. ...+++.+++++|.+.+. ..+ .+|+.+++++|.+.+ +|.. +++|+.|++++|++.+ +|.
T Consensus 294 ~-------~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-- 354 (454)
T 1jl5_A 294 E-------LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-- 354 (454)
T ss_dssp C-------CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC--
T ss_pred C-------cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc--
Confidence 0 013455566666665531 122 366777777777765 4432 4667777777777763 444
Q ss_pred cCCCCCCEEECCCCccee--cCCccc
Q 040540 421 ASLTSLRELHLGSNKLSS--SIPSSL 444 (669)
Q Consensus 421 ~~l~~L~~L~l~~N~l~~--~~p~~~ 444 (669)
.+++|+.|++++|++.+ .+|..+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred -hhhhccEEECCCCCCCcCCCChHHH
Confidence 35677777777777776 555543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=293.77 Aligned_cols=323 Identities=27% Similarity=0.396 Sum_probs=279.8
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+. |. +.++++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEEC
Confidence 579999999999987655 9999999999999999987655 99999999999999999865 33 899999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.+++ ++ .+..+++|+.|+++ |.+.+.. .+.++++|++|++++|.+.+. ..+..+++|++|++++|.+++.
T Consensus 142 ~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 142 SSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence 9999985 33 58999999999997 4454433 389999999999999999754 3488999999999999999987
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
.| +..+++|+.|++++|.+++ ++ .+. .+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKD-IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cc--ccccCCCCEEECCCCCccc-ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 55 7889999999999999974 43 343 68999999999999987655 8899999999999999987554 889
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 370 (669)
+++|+.|++++|++++.+ .+..+++|+.|++++|.+.+..| + ..+++|+.+++++|.+.+. .
T Consensus 286 l~~L~~L~L~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~~~~--~----~~l~~L~~L~l~~n~l~~~--~ 347 (466)
T 1o6v_A 286 LTALTNLELNENQLEDIS----------PISNLKNLTYLTLYFNNISDISP--V----SSLTKLQRLFFYNNKVSDV--S 347 (466)
T ss_dssp CTTCSEEECCSSCCSCCG----------GGGGCTTCSEEECCSSCCSCCGG--G----GGCTTCCEEECCSSCCCCC--G
T ss_pred CCccCeEEcCCCcccCch----------hhcCCCCCCEEECcCCcCCCchh--h----ccCccCCEeECCCCccCCc--h
Confidence 999999999999987642 25678999999999999998765 2 3478899999999999875 4
Q ss_pred cccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCcccee
Q 040540 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGH 415 (669)
Q Consensus 371 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~ 415 (669)
.+..+++|+.+++++|.+.+..| +..+++|+.|++++|.+++.
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 78899999999999999998887 88999999999999999863
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=289.59 Aligned_cols=312 Identities=19% Similarity=0.186 Sum_probs=210.3
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
..++++++|++++|.+....+..|..+++|++|++++|.+.+..+..|+.+++|++|+|++|.+++..|..+.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 45678888888888887655555788888888888888888777778888888888888888888777777888888888
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+++|+.+++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888887754445567788888888888888777777777788888888888877754 245566777777777766
Q ss_pred ccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCC
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSA 311 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 311 (669)
++ ++ ...+|++|++++|.+..... . ..++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..
T Consensus 199 ~~-~~-----~~~~L~~L~l~~n~l~~~~~-~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~--- 264 (390)
T 3o6n_A 199 ST-LA-----IPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM--- 264 (390)
T ss_dssp SE-EE-----CCSSCSEEECCSSCCCEEEC-C--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE---
T ss_pred cc-cC-----CCCcceEEECCCCeeeeccc-c--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC---
Confidence 52 11 23456666666666543321 1 124555555555555432 23444555555555555444321
Q ss_pred cccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCccccc
Q 040540 312 DQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY 391 (669)
Q Consensus 312 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~ 391 (669)
...+..+++|+.|++++| .+.+ ++..+..+++|+.|++++|.+.+
T Consensus 265 -----~~~~~~l~~L~~L~L~~n----------------------------~l~~-~~~~~~~l~~L~~L~L~~n~l~~- 309 (390)
T 3o6n_A 265 -----YHPFVKMQRLERLYISNN----------------------------RLVA-LNLYGQPIPTLKVLDLSHNHLLH- 309 (390)
T ss_dssp -----SGGGTTCSSCCEEECCSS----------------------------CCCE-EECSSSCCTTCCEEECCSSCCCC-
T ss_pred -----hhHccccccCCEEECCCC----------------------------cCcc-cCcccCCCCCCCEEECCCCccee-
Confidence 012333444444444444 4432 23334456778888888887773
Q ss_pred CchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 392 VPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 392 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
+|..+..+++|+.|++++|.+... + +..+++|+.|++++|++..
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 555677788888888888888754 3 5677889999999998874
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=304.16 Aligned_cols=313 Identities=19% Similarity=0.179 Sum_probs=227.2
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
..+.+++.|++++|.+....+..|..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+++..|..|+++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35678999999999998777777888999999999999999888888999999999999999999888888888999999
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+++..+..|+++++|++|++++|.+++..|..|+.+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999988866666678888888888888888888888888888888888888888764 245567777788877777
Q ss_pred ccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCC
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSA 311 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 311 (669)
++ ++ ...+|++|++++|.+....+.. .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..
T Consensus 205 ~~-l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~--- 270 (597)
T 3oja_B 205 ST-LA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM--- 270 (597)
T ss_dssp SE-EE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE---
T ss_pred cc-cc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC---
Confidence 53 11 2345677777777665432221 1355666666666554 234455555555555555544331
Q ss_pred cccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCccccc
Q 040540 312 DQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY 391 (669)
Q Consensus 312 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~ 391 (669)
...+..+++|+.|++ ++|.+.+ +|..+..+++|+.|++++|.+. .
T Consensus 271 -----~~~~~~l~~L~~L~L----------------------------s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~ 315 (597)
T 3oja_B 271 -----YHPFVKMQRLERLYI----------------------------SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-H 315 (597)
T ss_dssp -----SGGGTTCSSCCEEEC----------------------------TTSCCCE-EECSSSCCTTCCEEECCSSCCC-C
T ss_pred -----HHHhcCccCCCEEEC----------------------------CCCCCCC-CCcccccCCCCcEEECCCCCCC-c
Confidence 122334444444444 4444443 2344455677888888888887 4
Q ss_pred CchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceec
Q 040540 392 VPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSS 439 (669)
Q Consensus 392 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 439 (669)
+|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|++.+.
T Consensus 316 i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 6667778888999999999887542 56778999999999998753
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=290.19 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=152.1
Q ss_pred chhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
.+|+.++..++|||||++++++......+||||||++|+|.+++++. ..+++.....|+.|++.||+|||. .+||
T Consensus 98 ~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~-~~l~e~~~~~~~~qi~~aL~ylH~----~~Ii 172 (336)
T 4g3f_A 98 VEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQM-GCLPEDRALYYLGQALEGLEYLHT----RRIL 172 (336)
T ss_dssp THHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHT----TTEE
T ss_pred HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CCce
Confidence 46999999999999999999999999999999999999999999854 468999999999999999999994 5899
Q ss_pred ecCCCCcc-------------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 530 HCEGEDSV-------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 530 h~d~~~~~-------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
|||+|+.. .....+||+.|||||++.+..|+.++|||||||++|||+||
T Consensus 173 HRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG 252 (336)
T 4g3f_A 173 HGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNG 252 (336)
T ss_dssp CSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred ecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 99999530 00113599999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||........ +.. +....+. .. ..+...+..+.+++.+||++||++|||+.|+++.|.+..
T Consensus 253 ~~Pf~~~~~~~~-~~~-i~~~~~~-~~--------------~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 253 CHPWTQYFRGPL-CLK-IASEPPP-IR--------------EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp SCSSTTTCCSCC-HHH-HHHSCCG-GG--------------GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHH-HHH-HHcCCCC-ch--------------hcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence 999976433322 221 2111110 00 012234566789999999999999999999999988765
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
+.
T Consensus 316 ~~ 317 (336)
T 4g3f_A 316 QE 317 (336)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=284.41 Aligned_cols=200 Identities=17% Similarity=0.220 Sum_probs=147.0
Q ss_pred hhhhhhccccccccceecccccccc----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC---
Q 040540 451 SECEVLRNVRHRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH--- 523 (669)
Q Consensus 451 ~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--- 523 (669)
.|+..+..++|||+|+++++|..++ ..+||||||++|+|.++++.. .++|..+.+|+.|+++||+|||...
T Consensus 46 ~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~ 123 (303)
T 3hmm_A 46 AEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGT 123 (303)
T ss_dssp HHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCST
T ss_pred HHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4666677889999999999997653 468999999999999999853 5899999999999999999999541
Q ss_pred -CCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC------CcCccccchh
Q 040540 524 -SSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG------IVSAKCDVYS 567 (669)
Q Consensus 524 -~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s 567 (669)
..++|+|||+|+.. .....+||+.|||||++.+. .|+.|+||||
T Consensus 124 ~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS 203 (303)
T 3hmm_A 124 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYA 203 (303)
T ss_dssp TCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHH
T ss_pred cCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhh
Confidence 24589999999530 01123699999999998653 4788999999
Q ss_pred hHHHHHHHHhCCCCCCcCCC----------CCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcc
Q 040540 568 YGVLLMETFTRKRPTDEMFT----------GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCC 637 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~ 637 (669)
|||++|||+||+.|+..... .........+..... ..++.+... ....+++..+.+++.+||
T Consensus 204 ~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~rp~~p~~----~~~~~~~~~l~~li~~cl 275 (303)
T 3hmm_A 204 MGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ----KLRPNIPNR----WQSCEALRVMAKIMRECW 275 (303)
T ss_dssp HHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS----CCCCCCCGG----GGSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcc----cCCCCCCcc----ccchHHHHHHHHHHHHHc
Confidence 99999999999877643211 111222222211111 112222211 123456678899999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhHHH
Q 040540 638 MESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 638 ~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
+.||++||||.||+++|+++.+.
T Consensus 276 ~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 276 YANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ccCHhHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=288.03 Aligned_cols=315 Identities=18% Similarity=0.197 Sum_probs=244.4
Q ss_pred cccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCccc
Q 040540 64 GGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSL 143 (669)
Q Consensus 64 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 143 (669)
.+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++.+++|++|++++|++++. | +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence 344455688999999999999999975 5 689999999999999999974 4 89999999999999999974 3 8
Q ss_pred CCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcE
Q 040540 144 FNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRI 223 (669)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 223 (669)
+++++|++|++++|.+++ +| ++.+++|++|++++|++++. + ++.+++|++|++++|...+.+ .+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 999999999999999987 44 89999999999999999974 3 889999999999999766665 4788999999
Q ss_pred EEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCc
Q 040540 224 LTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNN 303 (669)
Q Consensus 224 L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~ 303 (669)
|++++|.+++ +| +. .+++|++|++++|++++. .+..+++|+.|++++|.+.+ +| +..+++|+.|++++|+
T Consensus 175 L~ls~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EECCSSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred EECCCCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 9999999986 66 43 689999999999999875 48889999999999999997 55 8899999999999999
Q ss_pred cccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEec
Q 040540 304 LTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYV 383 (669)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l 383 (669)
+++.+ ...+++|+.|+++.|.+ +.+++++|.+.+.+| ++.+++|+.+++
T Consensus 245 l~~~~-----------~~~l~~L~~L~l~~n~L------------------~~L~l~~n~~~~~~~--~~~l~~L~~L~L 293 (457)
T 3bz5_A 245 LTELD-----------VSTLSKLTTLHCIQTDL------------------LEIDLTHNTQLIYFQ--AEGCRKIKELDV 293 (457)
T ss_dssp CSCCC-----------CTTCTTCCEEECTTCCC------------------SCCCCTTCTTCCEEE--CTTCTTCCCCCC
T ss_pred CCCcC-----------HHHCCCCCEEeccCCCC------------------CEEECCCCccCCccc--ccccccCCEEEC
Confidence 98753 23345555555554432 223334444333333 233444444444
Q ss_pred CCCcccccCchh--------hcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 384 PENNLQGYVPHD--------LCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 384 ~~n~~~~~~p~~--------~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
++|...+.+|.. +...++|+.|++++|++++. + ++.+++|+.|++++|++++
T Consensus 294 s~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 294 THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred CCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 444443333321 23345677888888888763 2 6777888888888888775
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=295.22 Aligned_cols=192 Identities=24% Similarity=0.390 Sum_probs=153.2
Q ss_pred ccCchhhhhhccccc-cccceeccccccc-cccceeeccCCCCChHHhhhcC---------------CCccCHHHHHHHH
Q 040540 447 RSFDSECEVLRNVRH-RNLIKIISSCSNP-DFKALVLEFMPNGSLEKWLYSH---------------NYFLDILERLNIM 509 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h-~niv~l~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~---------------~~~l~~~~~~~i~ 509 (669)
+.|..|+.++.+++| ||||+++|+|..+ ...++|||||++|+|.++|+.. ...++|.++..|+
T Consensus 112 ~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (353)
T 4ase_A 112 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 191 (353)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHH
Confidence 467789999999965 8999999999764 5678999999999999999753 2358999999999
Q ss_pred HhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCcc
Q 040540 510 IDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 510 ~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.|||+||+|||. .+|||||+|+.. ...+..||+.|||||++.+..|+.|
T Consensus 192 ~qia~gl~yLH~----~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~k 267 (353)
T 4ase_A 192 FQVAKGMEFLAS----RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQ 267 (353)
T ss_dssp HHHHHHHHHHHH----TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHH
T ss_pred HHHHHHHHhHhh----CCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCc
Confidence 999999999995 479999999430 1122358999999999999999999
Q ss_pred ccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 563 CDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 563 ~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
+|||||||++|||+| |+.||...... ..+...+....... .+..++.++.+++.+||+.||
T Consensus 268 sDVwS~Gv~l~El~t~G~~Pf~~~~~~-~~~~~~i~~g~~~~-----------------~p~~~~~~~~~li~~c~~~dP 329 (353)
T 4ase_A 268 SDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKEGTRMR-----------------APDYTTPEMYQTMLDCWHGEP 329 (353)
T ss_dssp HHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHHHHHTCCCC-----------------CCTTCCHHHHHHHHHHTCSSG
T ss_pred ccEeehHHHHHHHHhCCCCCCCCCCHH-HHHHHHHHcCCCCC-----------------CCccCCHHHHHHHHHHcCcCh
Confidence 999999999999998 89999764322 22333333322111 122334567899999999999
Q ss_pred CCCCCHHHHHHHHHHhHHH
Q 040540 642 DKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 642 ~~Rps~~~v~~~l~~~~~~ 660 (669)
++||||.||++.|+++.+.
T Consensus 330 ~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 330 SQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp GGSCCHHHHHHHHHHHHHH
T ss_pred hHCcCHHHHHHHHHHHHHH
Confidence 9999999999999988654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=283.21 Aligned_cols=309 Identities=17% Similarity=0.186 Sum_probs=252.9
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|+|++|.+.+..|..|+++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 56889999999987655555889999999999999999888889999999999999999999888899999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.++...+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++. .++.+++|+.|++++|.+++.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 99999965555578999999999999999998899999999999999999999865 256789999999999998753
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
....+|+.|++++|.+. .+|.. ..++|++|++++|++.+. ..+..+++|+.|++++|.+.+..|..|..
T Consensus 202 -----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp -----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 34568999999999997 45543 357899999999999864 57899999999999999999988999999
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 370 (669)
+++|+.|++++|++++.+. ....+++|+.|++++|.+.+. |.
T Consensus 271 l~~L~~L~L~~n~l~~~~~---------~~~~l~~L~~L~L~~n~l~~~-~~---------------------------- 312 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNL---------YGQPIPTLKVLDLSHNHLLHV-ER---------------------------- 312 (390)
T ss_dssp CSSCCEEECCSSCCCEEEC---------SSSCCTTCCEEECCSSCCCCC-GG----------------------------
T ss_pred cccCCEEECCCCcCcccCc---------ccCCCCCCCEEECCCCcceec-Cc----------------------------
Confidence 9999999999999876532 234577888888888877643 22
Q ss_pred cccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccce
Q 040540 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSG 414 (669)
Q Consensus 371 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~ 414 (669)
.+..+++|+.|++++|.+.... +..+++|+.|++++|.+..
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred cccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 2233344555555555554331 3445666667777766654
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=283.68 Aligned_cols=185 Identities=22% Similarity=0.364 Sum_probs=142.6
Q ss_pred ccCchhhhhhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+.|.+|+.+++.++|||||++++++.. ....+||||||++|+|.+++++. ..+++.....|+.|+++||+|||..
T Consensus 70 ~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~ylH~~ 148 (290)
T 3fpq_A 70 QRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTR 148 (290)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 457789999999999999999998754 35578999999999999999853 5689999999999999999999954
Q ss_pred CCCCCeeecCCCCc------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 523 HSSAPIIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 523 ~~~~~i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.++|+|||+|+. ....+.+||+.|||||++.+ +|+.++|||||||++|||+||
T Consensus 149 --~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg 225 (290)
T 3fpq_A 149 --TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATS 225 (290)
T ss_dssp --SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHS
T ss_pred --CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHC
Confidence 345999999953 11223469999999998865 699999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ...+...+...... .. .+...++++.+++.+||+.||++|||++|+++
T Consensus 226 ~~Pf~~~~~-~~~~~~~i~~~~~~---~~-------------~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 226 EYPYSECQN-AAQIYRRVTSGVKP---AS-------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp SCTTTTCSS-HHHHHHHHTTTCCC---GG-------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCCCCc-HHHHHHHHHcCCCC---CC-------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 999965321 11122212111110 00 01122345789999999999999999999875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=298.99 Aligned_cols=287 Identities=16% Similarity=0.158 Sum_probs=242.5
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.++++++.+....+..|..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+.+..|..|+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 45788999999998766666899999999999999999988889999999999999999999988889999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++.. ++.+++|+.|++++|.+++.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence 999999766666899999999999999999999999999999999999999998653 56788999999999998753
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
....+|+.|++++|.+. .+|..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..|..
T Consensus 208 -----~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 208 -----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp -----ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 45568999999999997 455433 3689999999999986 477899999999999999999999999999
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccC
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN 365 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~ 365 (669)
+++|+.|++++|.+++.+ .....+++|+.|++++|.+.. +|..+. .+++|..|++++|.+.
T Consensus 277 l~~L~~L~Ls~N~l~~l~---------~~~~~l~~L~~L~Ls~N~l~~-i~~~~~----~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 277 MQRLERLYISNNRLVALN---------LYGQPIPTLKVLDLSHNHLLH-VERNQP----QFDRLENLYLDHNSIV 337 (597)
T ss_dssp CSSCCEEECTTSCCCEEE---------CSSSCCTTCCEEECCSSCCCC-CGGGHH----HHTTCSEEECCSSCCC
T ss_pred ccCCCEEECCCCCCCCCC---------cccccCCCCcEEECCCCCCCc-cCcccc----cCCCCCEEECCCCCCC
Confidence 999999999999987753 223457788888888888774 332222 1344555555555544
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=285.35 Aligned_cols=183 Identities=19% Similarity=0.267 Sum_probs=148.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++...+..|||||||++|+|.+++.+ ..+++.+...|+.|++.||+|||. .
T Consensus 116 ~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~--~~l~e~~~~~~~~qi~~aL~ylH~----~ 189 (346)
T 4fih_A 116 ELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHA----Q 189 (346)
T ss_dssp GGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 4567899999999999999999999999999999999999999999975 358999999999999999999995 4
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|||||+|+. ....+.+||+.|||||++.+..|+.++||||+||++|||+||+.|
T Consensus 190 ~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~P 269 (346)
T 4fih_A 190 GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPP 269 (346)
T ss_dssp TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 7999999953 112345799999999999998999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|... ....+...+....+... +.+...+.++.+++.+||+.||++|||+.|+++
T Consensus 270 F~~~--~~~~~~~~i~~~~~~~~---------------~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 270 YFNE--PPLKAMKMIRDNLPPRL---------------KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp TTTS--CHHHHHHHHHHSSCCCC---------------SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCc--CHHHHHHHHHcCCCCCC---------------CccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9752 22222222332222111 112234456789999999999999999999875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.7e-33 Score=281.92 Aligned_cols=249 Identities=30% Similarity=0.463 Sum_probs=224.0
Q ss_pred CCCCEEeCCCCcCcc--cCCcccCCCCCCCEEEccC-CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 75 SFLVSLDISENNFHG--HLPKELGQLRRLRVMSLAY-NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
.+++.|+|++|.+.+ .+|..|+++++|++|++++ |.+.+.+|..|+++++|++|+|++|++++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999999999 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCC-CCCEEEccCCCCCCCCCccccCCCCCcEEEcccCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQ-NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQ 230 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 230 (669)
|++++|.+.+.+|..+.++++|++|++++|.+++.+|..++.++ +|++|++++|.+++.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999999999999999999999999999999999999998 999999999999999999999987 9999999999
Q ss_pred CccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCC
Q 040540 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSS 310 (669)
Q Consensus 231 l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 310 (669)
+++.+|..+. .+++|++|++++|++.+.+|. +..+++|+.|++++|.+.+.+|..|..+++|+.|++++|++++..
T Consensus 209 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-- 284 (313)
T 1ogq_A 209 LEGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-- 284 (313)
T ss_dssp EEECCGGGCC-TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC--
T ss_pred ccCcCCHHHh-cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC--
Confidence 9887777665 689999999999999877665 778899999999999999889998999999999999988887542
Q ss_pred CcccccccccCCCCCCCEEECcCCC
Q 040540 311 ADQWSFLSSLTNCRNLSNLALASNP 335 (669)
Q Consensus 311 ~~~~~~~~~l~~l~~L~~L~l~~n~ 335 (669)
+....+++|+.+++++|+
T Consensus 285 -------p~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 285 -------PQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp -------CCSTTGGGSCGGGTCSSS
T ss_pred -------CCCccccccChHHhcCCC
Confidence 122456667777777776
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-31 Score=272.85 Aligned_cols=302 Identities=24% Similarity=0.385 Sum_probs=163.0
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.|+++++.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.. + +.+.++++|++|+++
T Consensus 45 ~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECT
T ss_pred cccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECc
Confidence 455555555555422 2 24555555555555555543222 5555555555555555542 2 235555555555555
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+|.+++. |. + ..+++|++|++++|.....++. +..+++|++|++++|.+.+..
T Consensus 119 ~n~i~~~-~~-~------------------------~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 119 EDNISDI-SP-L------------------------ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp TSCCCCC-GG-G------------------------TTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCcccCc-hh-h------------------------ccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCch
Confidence 5555432 11 4 4444444444444433322222 445555555555555554332
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
+ +..+++|+.|++++|.+.+ ++. + ..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+
T Consensus 172 ~--~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l 242 (347)
T 4fmz_A 172 P--IANLTDLYSLSLNYNQIED-ISP-L-ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANL 242 (347)
T ss_dssp G--GGGCTTCSEEECTTSCCCC-CGG-G-GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred h--hccCCCCCEEEccCCcccc-ccc-c-cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcC
Confidence 2 4445555555555555442 222 2 235555555555555544332 4555566666666666554322 5566
Q ss_pred CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCcc
Q 040540 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTS 371 (669)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~ 371 (669)
++|+.|++++|.++.. ..+..+++|+.|++++|.+.+. ..
T Consensus 243 ~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~------------------------------~~ 282 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI----------NAVKDLTKLKMLNVGSNQISDI------------------------------SV 282 (347)
T ss_dssp TTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCC------------------------------GG
T ss_pred CCCCEEECCCCccCCC----------hhHhcCCCcCEEEccCCccCCC------------------------------hh
Confidence 6666666666655442 2234455666666666554432 12
Q ss_pred ccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcce
Q 040540 372 IGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLS 437 (669)
Q Consensus 372 ~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 437 (669)
+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+++..| +..+++|+.|++++|+++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 3455667777777777777777777778888888888888776555 677888888888888764
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-33 Score=284.34 Aligned_cols=182 Identities=18% Similarity=0.253 Sum_probs=147.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+.+|+.+++.++|||||++++++..++..|||||||++|+|.++|... +..+++.+...|+.|++.||+|||.
T Consensus 68 ~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~---- 143 (350)
T 4b9d_A 68 EESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---- 143 (350)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 45778999999999999999999999999999999999999999999754 3457888999999999999999995
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
.+|+|||+|+.. ...+.+||+.|||||++.+..|+.++||||+||++|||+||+.
T Consensus 144 ~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~ 223 (350)
T 4b9d_A 144 RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKH 223 (350)
T ss_dssp TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 489999999541 0123369999999999999999999999999999999999999
Q ss_pred CCCcCCCCCccHHHHH-HHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWV-KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... ...+...+ ....+. .+...+.++.+++.+||+.||++|||+.|+++
T Consensus 224 PF~~~~--~~~~~~~i~~~~~~~------------------~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 224 AFEAGS--MKNLVLKIISGSFPP------------------VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp SCCCSS--HHHHHHHHHHTCCCC------------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCcC--HHHHHHHHHcCCCCC------------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 997532 11121111 111111 01123456789999999999999999999975
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=267.34 Aligned_cols=282 Identities=26% Similarity=0.397 Sum_probs=179.8
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
..+++.|++++|.+.+..+ +..+++|++|++++|.+.+ + +.+..+++|++|++++|.+.+. |. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 3579999999999986544 8999999999999999985 3 4699999999999999999854 43 89999999999
Q ss_pred ccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 130 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 99997654433 37777777777777776654333 5566666666666666653322 5556666666666666554
Q ss_pred CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccC
Q 040540 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFG 289 (669)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 289 (669)
..+ +..+++|++|++++|.++ +..+ +..+++|+.|++++|.+.+. ..+.
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~-------------------------~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKIT-------------------------DLSP--LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCC-------------------------CCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred Cch--hhcCCcCCEEEccCCccC-------------------------CCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence 322 444455555555555443 3222 44555555555555555432 2455
Q ss_pred CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCC
Q 040540 290 NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP 369 (669)
Q Consensus 290 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 369 (669)
.+++|+.|++++|++++. +.+..+++|+.|++++|.+.+..+..+
T Consensus 263 ~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~l------------------------- 307 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI----------SVLNNLSQLNSLFLNNNQLGNEDMEVI------------------------- 307 (347)
T ss_dssp TCTTCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCGGGHHHH-------------------------
T ss_pred cCCCcCEEEccCCccCCC----------hhhcCCCCCCEEECcCCcCCCcChhHh-------------------------
Confidence 666666777766665543 224456677777777776655443332
Q ss_pred ccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccc
Q 040540 370 TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS 413 (669)
Q Consensus 370 ~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~ 413 (669)
..+++|+.+++++|.+++..| +..+++|+.|++++|.++
T Consensus 308 ---~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 ---GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ---HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ---hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 233445555555555554444 445556666666666553
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=276.71 Aligned_cols=330 Identities=24% Similarity=0.332 Sum_probs=248.2
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.|++++|++++. |. -.++|++|++++|.+++ +|.. +++|++|++++|++.+ +|.. .++|++|+++
T Consensus 72 ~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 72 QAHELELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS 139 (454)
T ss_dssp TCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred CCCEEEecCCccccC-CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECc
Confidence 468999999999863 33 13789999999999987 6653 4789999999999985 3432 2689999999
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+|++++ +| .++++++|++|++++|.+.+ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|.+++ +
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 999996 77 69999999999999999986 66543 589999999999986 56 58999999999999999987 4
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
|.. .++|++|++++|.++ .+|. +. .+++|++|++++|++.+ +|.. .++|+.|++++|.+.+ +|.. .
T Consensus 211 ~~~---~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---C
T ss_pred CCC---cCcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---c
Confidence 443 258999999999998 7884 44 68999999999999876 4443 4789999999999986 5543 4
Q ss_pred CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCcc
Q 040540 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTS 371 (669)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~ 371 (669)
++|+.|++++|++++.+.. .++|+.|++++|.+.+.. . ...+|+.+++++|.+.+ +|..
T Consensus 277 ~~L~~L~ls~N~l~~l~~~------------~~~L~~L~l~~N~l~~i~-~-------~~~~L~~L~Ls~N~l~~-lp~~ 335 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSEL------------PPNLYYLNASSNEIRSLC-D-------LPPSLEELNVSNNKLIE-LPAL 335 (454)
T ss_dssp TTCCEEECCSSCCSEESCC------------CTTCCEEECCSSCCSEEC-C-------CCTTCCEEECCSSCCSC-CCCC
T ss_pred CcCCEEECcCCccCcccCc------------CCcCCEEECcCCcCCccc-C-------CcCcCCEEECCCCcccc-cccc
Confidence 7899999999998775321 157899999999988632 1 12478899999999986 4543
Q ss_pred ccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccce--eCcccccCC-------------CCCCEEECCCCcc
Q 040540 372 IGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSG--HIPPCLASL-------------TSLRELHLGSNKL 436 (669)
Q Consensus 372 ~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~--~~p~~l~~l-------------~~L~~L~l~~N~l 436 (669)
+++|+.+++++|.+++ +|. .+.+|+.|++++|++.+ .+|..++.+ ++|+.|++++|++
T Consensus 336 ---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 336 ---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp ---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred ---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 4789999999999885 555 47899999999999998 778888777 8899999999999
Q ss_pred ee--cCCccc
Q 040540 437 SS--SIPSSL 444 (669)
Q Consensus 437 ~~--~~p~~~ 444 (669)
.+ .+|.++
T Consensus 409 ~~~~~iP~sl 418 (454)
T 1jl5_A 409 REFPDIPESV 418 (454)
T ss_dssp ----------
T ss_pred CccccchhhH
Confidence 97 777654
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-32 Score=286.31 Aligned_cols=183 Identities=19% Similarity=0.270 Sum_probs=148.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++...+..|||||||++|+|.++++.. .+++.+...|+.|++.||+|||. .
T Consensus 193 ~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~~--~l~e~~~~~~~~qil~aL~ylH~----~ 266 (423)
T 4fie_A 193 ELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLHA----Q 266 (423)
T ss_dssp GGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 35678999999999999999999999999999999999999999999753 48999999999999999999995 4
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|||||+|+. ....+.+||+.|||||++.+..|+.++||||+||++|||++|+.|
T Consensus 267 ~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~P 346 (423)
T 4fie_A 267 GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPP 346 (423)
T ss_dssp TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 8999999953 112345799999999999999999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.+. ....+...+....+... ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus 347 F~~~--~~~~~~~~i~~~~~~~~---------------~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 347 YFNE--PPLKAMKMIRDNLPPRL---------------KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp TTTS--CHHHHHHHHHHSCCCCC---------------SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCc--CHHHHHHHHHcCCCCCC---------------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9752 22222233332222111 012233456789999999999999999999876
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-32 Score=272.98 Aligned_cols=175 Identities=19% Similarity=0.179 Sum_probs=137.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||||++++++..++..++|||||++|+|.+++++. ..+++.+...|+.|++.||+|||. .+
T Consensus 72 ~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~-~~l~e~~~~~~~~qi~~aL~ylH~----~~ 146 (304)
T 3ubd_A 72 RTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE-VMFTEEDVKFYLAELALALDHLHS----LG 146 (304)
T ss_dssp ------CCCCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4667999999999999999999999999999999999999999999864 468999999999999999999995 47
Q ss_pred eeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+. ....+.+||+.|||||++.+..|+.++||||+||++|||+||+.||
T Consensus 147 IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF 226 (304)
T 3ubd_A 147 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPF 226 (304)
T ss_dssp CCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCC
Confidence 999999954 1123346999999999999999999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.... ...+...+...... .+...+.++.+++.+||+.||++|||+
T Consensus 227 ~~~~--~~~~~~~i~~~~~~------------------~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 227 QGKD--RKETMTMILKAKLG------------------MPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp CCSS--HHHHHHHHHHCCCC------------------CCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred CCcC--HHHHHHHHHcCCCC------------------CCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 7532 11222222111110 011234567899999999999999985
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-32 Score=273.39 Aligned_cols=180 Identities=18% Similarity=0.181 Sum_probs=145.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++...+..++|||||++|+|.+++++. ..+++.+...|+.|++.||+|||. .
T Consensus 77 ~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~~~-~~l~e~~~~~~~~qi~~al~ylH~----~ 151 (311)
T 4aw0_A 77 PYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI-GSFDETCTRFYTAEIVSALEYLHG----K 151 (311)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 35678999999999999999999999999999999999999999999854 458999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ...+.+||+.|||||++.+..|+.++||||+||++|||+||+
T Consensus 152 ~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~ 231 (311)
T 4aw0_A 152 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL 231 (311)
T ss_dssp TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSS
T ss_pred CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 89999999530 122347999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
.||.... ...+..-+..... .+ +...+.++.+++.+|++.||++|||++|+.
T Consensus 232 ~PF~~~~--~~~~~~~i~~~~~-~~-----------------p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 232 PPFRAGN--EGLIFAKIIKLEY-DF-----------------PEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CSSCCSS--HHHHHHHHHHTCC-CC-----------------CTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CCCCCCC--HHHHHHHHHcCCC-CC-----------------CcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 9997532 1122222211110 00 112234678999999999999999999874
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=260.07 Aligned_cols=244 Identities=23% Similarity=0.328 Sum_probs=163.7
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.++++++++. .+|..+. +.|++|++++|.+++..+..|.++++|++|++++|++.+..|..|+++++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4567888888886 4555443 688999999999988777789999999999999999988778889999999999999
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc--cCCccccCCCCCCEEEccCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG--QIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+|+++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99987 4565544 677777777777776666667777777777777777643 556666677777777777777664
Q ss_pred CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccC
Q 040540 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFG 289 (669)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 289 (669)
+|..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+.
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 333332 4556666666655543333333 4555555555555555544445555555555555555554 3444444
Q ss_pred CCCCCCEEEccCCcccc
Q 040540 290 NLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 290 ~l~~L~~L~l~~N~l~~ 306 (669)
.+++|+.|++++|+++.
T Consensus 261 ~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TCSSCCEEECCSSCCCC
T ss_pred cCCCcCEEECCCCcCCc
Confidence 45555555555554443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-30 Score=262.48 Aligned_cols=219 Identities=25% Similarity=0.318 Sum_probs=139.0
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.++++++++. .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++.+..|..|+++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4567888888876 5555543 578888888888887777778888888888888888887777888888888888888
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCc--ccCCccccCCCCCCEEEccCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ--GQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+|+++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+. +..|..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 88877 4555444 56777777777666555555666666666666666664 2445555555 56666666666554
Q ss_pred CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccC
Q 040540 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFG 289 (669)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 289 (669)
+|..+. ++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..|.
T Consensus 187 -l~~~~~---------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 187 -IPKDLP---------------------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp -CCSSSC---------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred -cCcccc---------------------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 233222 3444555555555444444455555555555555555544444455
Q ss_pred CCCCCCEEEccCCccc
Q 040540 290 NLRHLSVLNVMMNNLT 305 (669)
Q Consensus 290 ~l~~L~~L~l~~N~l~ 305 (669)
.+++|+.|++++|+++
T Consensus 239 ~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS 254 (332)
T ss_dssp GCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCe
Confidence 5555555555555444
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-32 Score=266.00 Aligned_cols=179 Identities=21% Similarity=0.259 Sum_probs=139.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.+++.++|||||++++++...+..++||||| +|+|.+++.+. ..+++.+...++.|++.|++|||. .+
T Consensus 59 ~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~~~l~~~-~~l~e~~~~~~~~qi~~al~ylH~----~~ 132 (275)
T 3hyh_A 59 RIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHR----HK 132 (275)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC-CEEHHHHHHHS-CSCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4678999999999999999999999999999999999 58999999864 468999999999999999999995 48
Q ss_pred eeecCCCCc------------------------ccccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+. ....+.+||+.|||||++.+..| +.++||||+||++|||+||+.||
T Consensus 133 IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF 212 (275)
T 3hyh_A 133 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPF 212 (275)
T ss_dssp CCCCCCCTTTEEECTTCCEEECCSSCC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCC
Confidence 999999954 11233469999999999988775 68999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... ...+.+.+...... + +...+..+.+++.+|++.||++|||++|+++
T Consensus 213 ~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 213 DDES--IPVLFKNISNGVYT-L-----------------PKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp CCSS--HHHHHHHHHHTCCC-C-----------------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCC--HHHHHHHHHcCCCC-C-----------------CCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 7521 11122222221111 0 1122345789999999999999999999976
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=260.41 Aligned_cols=283 Identities=19% Similarity=0.241 Sum_probs=232.6
Q ss_pred CCCccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccC
Q 040540 38 ICSWAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAY 108 (669)
Q Consensus 38 ~c~~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 108 (669)
.|.|..+.|... ...++.|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 456777777532 24689999999999988887899999999999999999988899999999999999999
Q ss_pred CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccc--cCCcccCCCCCCCEEEcccCCCccc
Q 040540 109 NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG--TIPSRIGNLRKLVNLGLWSCNLQGQ 186 (669)
Q Consensus 109 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~L~~L~~L~l~~n~l~~~ 186 (669)
|++. .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.. ..+..+.++++|++|++++|.++.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 9998 5676554 799999999999998888889999999999999999864 778899999999999999999984
Q ss_pred CCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccC
Q 040540 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266 (669)
Q Consensus 187 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 266 (669)
+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+. .+++|++|++++|++. .+|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhcc
Confidence 565443 7999999999999998899999999999999999999865555555 6899999999999997 77888999
Q ss_pred CCCCCEEeCCCCCccccCccccCCC------CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCC
Q 040540 267 ATKLIGLDLGFNSFSGHIPNTFGNL------RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASN 334 (669)
Q Consensus 267 l~~L~~L~ls~n~l~~~~p~~~~~l------~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 334 (669)
+++|+.|++++|.+++..+..|... ..++.|++.+|.+...... ...+..+.+++.+++++|
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~------~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ------PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC------GGGGTTCCCGGGEEC---
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC------ccccccccceeEEEeccc
Confidence 9999999999999997766666433 5566666666665432111 123444555555555554
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=260.19 Aligned_cols=282 Identities=20% Similarity=0.265 Sum_probs=225.1
Q ss_pred CCCccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccC
Q 040540 38 ICSWAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAY 108 (669)
Q Consensus 38 ~c~~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 108 (669)
.|.|..+.|... ...++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 367887777532 24789999999999988888999999999999999999998899999999999999999
Q ss_pred CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccccc--ccCCcccCCCCCCCEEEcccCCCccc
Q 040540 109 NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIG--GTIPSRIGNLRKLVNLGLWSCNLQGQ 186 (669)
Q Consensus 109 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~L~~L~~L~l~~n~l~~~ 186 (669)
|++. .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+. +..|..+..+ +|++|++++|.+++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 9998 5666555 89999999999999777778999999999999999996 4778888888 99999999999985
Q ss_pred CCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccC
Q 040540 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266 (669)
Q Consensus 187 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 266 (669)
+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+. .+++|++|++++|++. .+|..+..
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhhhc
Confidence 565544 7899999999999998888899999999999999998865554554 6888999999988887 67777888
Q ss_pred CCCCCEEeCCCCCccccCccccCCC------CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCC
Q 040540 267 ATKLIGLDLGFNSFSGHIPNTFGNL------RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASN 334 (669)
Q Consensus 267 l~~L~~L~ls~n~l~~~~p~~~~~l------~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 334 (669)
+++|+.|++++|.+.+..+..|... .+|+.|++.+|.+......+ ..+..+++|+.+++++|
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~------~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP------ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG------GGGTTBCCSTTEEC---
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc------ccccccchhhhhhcccc
Confidence 8888888888888886665555442 44566666666554211111 22444555555555554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=262.76 Aligned_cols=287 Identities=20% Similarity=0.201 Sum_probs=227.5
Q ss_pred CCCCCCCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 040540 32 WSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111 (669)
Q Consensus 32 w~~~~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 111 (669)
|......|.|.++ | +.++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++
T Consensus 23 ~~~~~~~C~~~~~-c----------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-C----------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-E----------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-e----------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 4444566777765 4 55666665 4555444 4889999999999877777889999999999999999
Q ss_pred CccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCC-cccCCCCCCCEEEcccCC-CcccCCc
Q 040540 112 SGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCN-LQGQIPT 189 (669)
Q Consensus 112 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~-l~~~~p~ 189 (669)
.+..|..|+++++|++|+|++|++++..+..+.++++|++|++++|.+.+..+ ..+.++++|++|++++|+ +.+..|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 88778889999999999999999986555558889999999999998885444 478899999999999984 7766678
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCcccc---C
Q 040540 190 EIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSIT---N 266 (669)
Q Consensus 190 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~---~ 266 (669)
.|+.+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+...+++|++|++++|++.+..+..+. .
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 8899999999999999999888999999999999999999985 67776665688999999999998876555443 3
Q ss_pred CCCCCEEeCCCCCccc----cCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccc
Q 040540 267 ATKLIGLDLGFNSFSG----HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP 341 (669)
Q Consensus 267 l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 341 (669)
...++.++++++.+.+ .+|..+..+++|+.|++++|+++..+. ..+..+++|+.|++++|++.+..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~--------~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD--------GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH--------HHHhcCCCCCEEEeeCCCccCcCC
Confidence 5667888888888775 367778889999999999999886532 124678899999999999887654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=255.09 Aligned_cols=285 Identities=18% Similarity=0.188 Sum_probs=221.6
Q ss_pred hcCCCcccccCCCCC--CCCCCCccceeeCCCCCCEEEEEcCCCCCccc----cccc--ccCCCCCCEEeCCCCcCcccC
Q 040540 20 HAFDYRSALANNWSI--SYPICSWAGISCGSRHQRVTALNLSDMGLGGT----IPLH--FGNLSFLVSLDISENNFHGHL 91 (669)
Q Consensus 20 ~~~~~~~~l~~~w~~--~~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~----~~~~--~~~l~~L~~L~Ls~N~l~~~~ 91 (669)
.+.++..+|.. |.. ..++|.|.+.-|...... -..+...|. .+.. -....++++|+|++|.+. .+
T Consensus 24 ~~~~~~~aLl~-~k~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l 96 (328)
T 4fcg_A 24 ALRPYHDVLSQ-WQRHYNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96 (328)
T ss_dssp CCCCHHHHHHH-HHHHHHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC
T ss_pred cCchHHHHHHH-HHHhccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc
Confidence 33455556665 764 247888876655211110 001111111 1111 124578899999999988 67
Q ss_pred CcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCC
Q 040540 92 PKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLR 171 (669)
Q Consensus 92 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~ 171 (669)
|..++++++|++|+|++|.+. .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|++.+.+|..++..
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~- 173 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST- 173 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-
Confidence 878888999999999999988 78888899999999999999888 678788888888888888877777777655431
Q ss_pred CCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeec
Q 040540 172 KLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLAL 251 (669)
Q Consensus 172 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l 251 (669)
..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+. .+++|++|++
T Consensus 174 --------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L~L 236 (328)
T 4fcg_A 174 --------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDL 236 (328)
T ss_dssp --------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEEEC
T ss_pred --------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEEEC
Confidence 12334667999999999999999 78999999999999999999998 4777766 6999999999
Q ss_pred ccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEEC
Q 040540 252 STNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLAL 331 (669)
Q Consensus 252 s~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l 331 (669)
++|++.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|++.+.. +..+..+++++.+++
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i--------P~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL--------PSLIAQLPANCIILV 308 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC--------CGGGGGSCTTCEEEC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc--------cHHHhhccCceEEeC
Confidence 999999999999999999999999999999999999999999999999999876642 245778899999999
Q ss_pred cCCCCccc
Q 040540 332 ASNPLGGI 339 (669)
Q Consensus 332 ~~n~l~~~ 339 (669)
..+.+...
T Consensus 309 ~~~~~~~l 316 (328)
T 4fcg_A 309 PPHLQAQL 316 (328)
T ss_dssp CGGGSCC-
T ss_pred CHHHHHHH
Confidence 98766543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-32 Score=292.15 Aligned_cols=359 Identities=17% Similarity=0.181 Sum_probs=227.7
Q ss_pred CCEEEEEcCCCCCccccccc-ccCCCCCCEEeCCCCcCcc----cCCcccCCCCCCCEEEccCCcCCccCCccc-cCCc-
Q 040540 51 QRVTALNLSDMGLGGTIPLH-FGNLSFLVSLDISENNFHG----HLPKELGQLRRLRVMSLAYNKLSGSFPSWI-GVLS- 123 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~- 123 (669)
.+++.||+++++++...... +..+++|++|++++|.+.+ .++..+..+++|++|+|++|.+....+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35788999999887654443 6788899999999998874 346667788899999999998875434333 3455
Q ss_pred ---ccccccccccCccc----cCCcccCCCCCCCeeecccccccccCCccc-----CCCCCCCEEEcccCCCccc----C
Q 040540 124 ---KLRILRLDYNNFTG----PIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-----GNLRKLVNLGLWSCNLQGQ----I 187 (669)
Q Consensus 124 ---~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-----~~L~~L~~L~l~~n~l~~~----~ 187 (669)
+|++|+|++|.++. .+|..+.++++|++|++++|.++...+..+ ...++|++|++++|.+++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68999999998873 557778888888888888888765444332 2356788888888887763 3
Q ss_pred CccccCCCCCCEEEccCCCCCCCCCcccc-----CCCCCcEEEcccCCCccc----cchhhhccCCCCCeeecccCcccc
Q 040540 188 PTEIGSLQNLKNLDLADNKLSGLIPPTIF-----NISTMRILTLESNQLSGR----LPSTIGHSLRNIEYLALSTNNLIG 258 (669)
Q Consensus 188 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~~ 258 (669)
+..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+. .+++|++|++++|.+.+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCCh
Confidence 55566677888888888887654333333 255778888888877643 344444 46777777777777654
Q ss_pred cC-----CccccCCCCCCEEeCCCCCcccc----CccccCCCCCCCEEEccCCccccCCCCCccccccccc-CCCCCCCE
Q 040540 259 KI-----PNSITNATKLIGLDLGFNSFSGH----IPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSL-TNCRNLSN 328 (669)
Q Consensus 259 ~~-----p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l-~~l~~L~~ 328 (669)
.. +..+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.+.... .+...+ ...++|+.
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR----LLCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH----HHHHHHTSTTCCCCE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH----HHHHHhccCCcccee
Confidence 32 22223467777777777777653 455566667777777777766432100 000111 12346777
Q ss_pred EECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccc-----cCCCcEEecCCCcccc----cCchhhcCC
Q 040540 329 LALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGT-----LQQLQGFYVPENNLQG----YVPHDLCHL 399 (669)
Q Consensus 329 L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~n~~~~----~~p~~~~~l 399 (669)
|++++|.+++.....+.......++|+.+++++|.+.+..+..+.. .++|+.|++++|.+.+ .+|..+..+
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 7777777665433222222233455666666666655433332221 3456666666666654 455555556
Q ss_pred CCCCeeeCcCCccce
Q 040540 400 ERLNILNLSGNKLSG 414 (669)
Q Consensus 400 ~~L~~L~ls~n~l~~ 414 (669)
++|+.|++++|++++
T Consensus 398 ~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 398 HSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCCEEECCSSSCCH
T ss_pred CCccEEECCCCCCCH
Confidence 666666666666554
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-30 Score=260.20 Aligned_cols=181 Identities=18% Similarity=0.262 Sum_probs=134.7
Q ss_pred ccCchhhhhhccccccccceecccccccc------------ccceeeccCCCCChHHhhhcCCC--ccCHHHHHHHHHhH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------------FKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDV 512 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------------~~~lv~ey~~~g~L~~~l~~~~~--~l~~~~~~~i~~~i 512 (669)
+.+.+|+.+++.++|||||++++++...+ ..++|||||++|+|.+++..... ..++.....|+.|+
T Consensus 48 ~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi 127 (299)
T 4g31_A 48 EKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQI 127 (299)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 45678999999999999999999886533 36899999999999999986432 34566678899999
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCcc-------------------------------------cccccccccccCcccccc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDSV-------------------------------------TQTTTMATIGYMAPEYGS 555 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~~-------------------------------------~~~~~~gt~~y~aPE~~~ 555 (669)
+.||+|||. .+|+|||+|+.. ..++.+||+.|||||++.
T Consensus 128 ~~al~ylH~----~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~ 203 (299)
T 4g31_A 128 AEAVEFLHS----KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIH 203 (299)
T ss_dssp HHHHHHHHH----TTCCCCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHT
T ss_pred HHHHHHHHH----CcCccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHc
Confidence 999999995 479999999540 011236999999999999
Q ss_pred CCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 556 EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 556 ~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
+..|+.++|||||||++|||++ ||... ......+........ + +......+.+.+++.+
T Consensus 204 ~~~y~~~~DiwSlGvilyell~---Pf~~~----~~~~~~~~~~~~~~~-----p---------~~~~~~~~~~~~li~~ 262 (299)
T 4g31_A 204 GNSYSHKVDIFSLGLILFELLY---PFSTQ----MERVRTLTDVRNLKF-----P---------PLFTQKYPCEYVMVQD 262 (299)
T ss_dssp TCCCCTHHHHHHHHHHHHHHHS---CCSSH----HHHHHHHHHHHTTCC-----C---------HHHHHHCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHcc---CCCCc----cHHHHHHHHHhcCCC-----C---------CCCcccCHHHHHHHHH
Confidence 9999999999999999999996 66431 111111111000000 0 1123344556789999
Q ss_pred cccCCCCCCCCHHHHHH
Q 040540 636 CCMESPDKRMHMTDAAA 652 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~ 652 (669)
||+.||++|||+.|+++
T Consensus 263 ~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 263 MLSPSPMERPEAINIIE 279 (299)
T ss_dssp HTCSSGGGSCCHHHHHT
T ss_pred HcCCChhHCcCHHHHhc
Confidence 99999999999999976
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-32 Score=290.92 Aligned_cols=360 Identities=20% Similarity=0.200 Sum_probs=283.5
Q ss_pred CCCCEEeCCCCcCcccCCcc-cCCCCCCCEEEccCCcCCc----cCCccccCCcccccccccccCccccCCcccC-CCC-
Q 040540 75 SFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLAYNKLSG----SFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLS- 147 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~- 147 (669)
++|++||+++|.++...... +..+++|++|++++|.+.. .++..+..+++|++|+|++|.++...+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56899999999997654443 7789999999999999874 4577788899999999999999865444433 355
Q ss_pred ---CCCeeecccccccc----cCCcccCCCCCCCEEEcccCCCcccCCcccc-----CCCCCCEEEccCCCCCCCC----
Q 040540 148 ---RLEMLRAEFNIIGG----TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG-----SLQNLKNLDLADNKLSGLI---- 211 (669)
Q Consensus 148 ---~L~~L~l~~n~l~~----~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~N~l~~~~---- 211 (669)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 6688999999999999999999765444332 3568999999999998743
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhc----cCCCCCeeecccCccccc----CCccccCCCCCCEEeCCCCCcccc
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGH----SLRNIEYLALSTNNLIGK----IPNSITNATKLIGLDLGFNSFSGH 283 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~----~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~ 283 (669)
+..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.+.+. ++..+..+++|+.|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 566777899999999999987544444332 356999999999998764 466778899999999999998754
Q ss_pred C-----ccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh-hccccccceE
Q 040540 284 I-----PNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF-SASLQNIYAF 357 (669)
Q Consensus 284 ~-----p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~l 357 (669)
. +..+..+++|+.|++++|.++.... ..+...+..+++|++|++++|.+.+..+..+... ....++|+.+
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC----GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHH----HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 2 3334568999999999998865310 0122345568899999999999876554444332 1223589999
Q ss_pred eecCcccCCC----CCccccccCCCcEEecCCCcccccCchhhcC-----CCCCCeeeCcCCccce----eCcccccCCC
Q 040540 358 ELGFNDLNGT----IPTSIGTLQQLQGFYVPENNLQGYVPHDLCH-----LERLNILNLSGNKLSG----HIPPCLASLT 424 (669)
Q Consensus 358 ~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~-----l~~L~~L~ls~n~l~~----~~p~~l~~l~ 424 (669)
++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+++ .+|..+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 9999998865 4556677899999999999988766555443 6799999999999986 6788888899
Q ss_pred CCCEEECCCCccee
Q 040540 425 SLRELHLGSNKLSS 438 (669)
Q Consensus 425 ~L~~L~l~~N~l~~ 438 (669)
+|++|++++|++.+
T Consensus 399 ~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 399 SLRELDLSNNCLGD 412 (461)
T ss_dssp CCCEEECCSSSCCH
T ss_pred CccEEECCCCCCCH
Confidence 99999999999874
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=248.59 Aligned_cols=231 Identities=21% Similarity=0.266 Sum_probs=178.6
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCc--cCCccccCCcccccccccccCccccCCcccCCCCCCCee
Q 040540 75 SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG--SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEML 152 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 152 (669)
++|++|++++|.+....+..|.++++|++|+|++|++.. ..|..+..+++|++|+|++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 577888888888875555557788888888888888763 23566667788888888888877 466667788888888
Q ss_pred ecccccccccCC-cccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC-CCCccccCCCCCcEEEcccCC
Q 040540 153 RAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG-LIPPTIFNISTMRILTLESNQ 230 (669)
Q Consensus 153 ~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~n~ 230 (669)
++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 888888776554 567788888888888888887777778888888888888888876 567777888888888888888
Q ss_pred CccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC-CCCCEEEccCCccccC
Q 040540 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL-RHLSVLNVMMNNLTTE 307 (669)
Q Consensus 231 l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~ 307 (669)
+++..|..+. .+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|..+..+ ++|+.|++++|.++..
T Consensus 187 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 8755555554 57888888888888877777778888888888888888888888888877 4888888888887653
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=253.98 Aligned_cols=247 Identities=21% Similarity=0.218 Sum_probs=191.7
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
.+.++.++.++. .+|..+. +++++|+|++|.+.+..|..|.++++|++|+|++|++.+..|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345677777775 4555443 6889999999999988888899999999999999999888888899999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCC-CcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN-LQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
|++++..+..+.++++|++|++++|.+....+..|.++++|++|++++|+ +....+..|..+++|++|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 99987777778889999999999998887777788888999999998854 4434444688888888888888888864
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
| .+..+++|+.|++++|.+++..|..+. .+++|++|++++|++.+..+..|..+++|+.|++++|.+.+..+..|..+
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred c-cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 467777788888888877755555554 57777777777777777777777777777777777777776666666667
Q ss_pred CCCCEEEccCCccc
Q 040540 292 RHLSVLNVMMNNLT 305 (669)
Q Consensus 292 ~~L~~L~l~~N~l~ 305 (669)
++|+.|++++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 77777777766554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=244.18 Aligned_cols=244 Identities=21% Similarity=0.252 Sum_probs=187.0
Q ss_pred CCCccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCccc--CCcccCCCCCCCEEEc
Q 040540 38 ICSWAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGH--LPKELGQLRRLRVMSL 106 (669)
Q Consensus 38 ~c~~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L 106 (669)
.|.|.++.|... ...++.|++++|++....+..|.++++|++|++++|.+... .|..+..+++|++|++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 467887777642 24678888888888754444577888888888888887632 3566667888888888
Q ss_pred cCCcCCccCCccccCCcccccccccccCccccCC-cccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc
Q 040540 107 AYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIP-NSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG 185 (669)
Q Consensus 107 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~ 185 (669)
++|.+. .+|..+..+++|++|++++|++++..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 888877 466678888888888888888876554 567788888888888888887788888888888888888888876
Q ss_pred -cCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccc
Q 040540 186 -QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI 264 (669)
Q Consensus 186 -~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~ 264 (669)
.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|++.+..|..+
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT-TCTTCCEEECTTSCCCBCSSSSC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc-CcccCCEeECCCCCCcccCHHHH
Confidence 5677788888888888888888877777888888888888888888754343443 57888888888888888878777
Q ss_pred cCCC-CCCEEeCCCCCcccc
Q 040540 265 TNAT-KLIGLDLGFNSFSGH 283 (669)
Q Consensus 265 ~~l~-~L~~L~ls~n~l~~~ 283 (669)
..++ +|+.|++++|.+.+.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEECTTCCEECS
T ss_pred HhhhccCCEEEccCCCeecc
Confidence 7774 788888888887654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-30 Score=263.16 Aligned_cols=248 Identities=22% Similarity=0.252 Sum_probs=138.5
Q ss_pred CCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC-CccCCcccc-------CCcccccccccccCccccCCccc-
Q 040540 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL-SGSFPSWIG-------VLSKLRILRLDYNNFTGPIPNSL- 143 (669)
Q Consensus 73 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~- 143 (669)
..++|+.|++++|.+ .+|..+... |+.|+|++|.+ .+.+|..+. ++++|++|+|++|++++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344455555555555 444444332 55555555555 233444443 45555555555555555555544
Q ss_pred -CCCCCCCeeecccccccccCCcccCCC-----CCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC--CCccc
Q 040540 144 -FNLSRLEMLRAEFNIIGGTIPSRIGNL-----RKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL--IPPTI 215 (669)
Q Consensus 144 -~~l~~L~~L~l~~n~l~~~~p~~~~~L-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~ 215 (669)
..+++|++|++++|.+++. |..++.+ ++|++|++++|++.+..|..|+.+++|++|++++|.+.+. .|..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5555555555555555554 5555444 5666666666666655555666666666666666665543 22233
Q ss_pred --cCCCCCcEEEcccCCCcc--ccchhhhccCCCCCeeecccCcccccCC-ccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 216 --FNISTMRILTLESNQLSG--RLPSTIGHSLRNIEYLALSTNNLIGKIP-NSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 216 --~~l~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
..+++|++|++++|.+++ .++..++..+++|++|++++|++.+..| ..+..+++|+.|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 555666666666666652 2333343355666666666666666553 34445666666666666666 4555444
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCcc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGG 338 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 338 (669)
++|+.|++++|++++.+ .+..+++|+.|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~p----------~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNP----------SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSCC----------CTTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCCh----------hHhhCCCCCEEeccCCCCCC
Confidence 56666777666665541 13455666677777776654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=249.81 Aligned_cols=247 Identities=21% Similarity=0.225 Sum_probs=187.5
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
.+.++.+++++. .+|..+. ++++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 356777777776 4565543 6889999999999988888899999999999999999877778899999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCC-CcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN-LQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
|++++..+..|..+++|++|++++|.+....+..|.++++|++|++++|+ +....+..|..+++|++|++++|.++..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 99987767778889999999999998887777788888899999998855 4434444688888888888888888743
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
| .+..+++|+.|++++|.+++..|..+. .+++|++|++++|++.+..+..|..+++|+.|++++|.+.+..+..|..+
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 3 366677777777777777654444443 56677777777777766666666666777777777776665555556666
Q ss_pred CCCCEEEccCCccc
Q 040540 292 RHLSVLNVMMNNLT 305 (669)
Q Consensus 292 ~~L~~L~l~~N~l~ 305 (669)
++|+.|++++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 66666666666543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=251.57 Aligned_cols=238 Identities=22% Similarity=0.238 Sum_probs=213.6
Q ss_pred ccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 040540 41 WAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111 (669)
Q Consensus 41 ~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 111 (669)
|..+.|... ...++.|+|++|++.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 456677542 25789999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccc-ccccCCcccCCCCCCCEEEcccCCCcccCCcc
Q 040540 112 SGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI-IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTE 190 (669)
Q Consensus 112 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~ 190 (669)
.+..+..|.++++|++|+|++|++++..+..|.++++|+.|++++|+ +....+..+.++++|++|++++|++++. | .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-c
Confidence 97777889999999999999999998777889999999999999954 5444455799999999999999999854 4 4
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCC
Q 040540 191 IGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKL 270 (669)
Q Consensus 191 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 270 (669)
+..+++|++|+|++|.+++..|..|.++++|+.|++++|.+++..|..+. .+++|++|+|++|++++..+..+..+++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCCcCCccChHHhccccCC
Confidence 88999999999999999999999999999999999999999866666554 79999999999999998888889999999
Q ss_pred CEEeCCCCCcc
Q 040540 271 IGLDLGFNSFS 281 (669)
Q Consensus 271 ~~L~ls~n~l~ 281 (669)
+.|++++|.+.
T Consensus 293 ~~L~L~~Np~~ 303 (452)
T 3zyi_A 293 VELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEccCCCcC
Confidence 99999999875
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=250.58 Aligned_cols=257 Identities=20% Similarity=0.211 Sum_probs=219.7
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..++++++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 57999999999999877778999999999999999999988899999999999999999999655566999999999999
Q ss_pred cccCccccCC-cccCCCCCCCeeecccc-cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC
Q 040540 131 DYNNFTGPIP-NSLFNLSRLEMLRAEFN-IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 131 ~~n~l~~~~p-~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 208 (669)
++|++++..+ ..+.++++|++|++++| .+....+..+.++++|++|++++|.+.+..|..++.+++|++|++++|.++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999985444 47899999999999999 477777889999999999999999999999999999999999999999997
Q ss_pred CCCCccccCCCCCcEEEcccCCCccccchhhh--ccCCCCCeeecccCcccc----cCCccccCCCCCCEEeCCCCCccc
Q 040540 209 GLIPPTIFNISTMRILTLESNQLSGRLPSTIG--HSLRNIEYLALSTNNLIG----KIPNSITNATKLIGLDLGFNSFSG 282 (669)
Q Consensus 209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~ 282 (669)
...+..+..+++|+.|++++|.+++..+..+. .....++.++++++.+.+ .+|..+..+++|+.|++++|.+..
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 55444455689999999999999864433322 134567888888887765 367778899999999999999995
Q ss_pred cCccccCCCCCCCEEEccCCccccC
Q 040540 283 HIPNTFGNLRHLSVLNVMMNNLTTE 307 (669)
Q Consensus 283 ~~p~~~~~l~~L~~L~l~~N~l~~~ 307 (669)
..+..|..+++|+.|++++|.+...
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCc
Confidence 4444468999999999999988653
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=269.82 Aligned_cols=186 Identities=19% Similarity=0.205 Sum_probs=148.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++......++|||||++|+|.+++.+....+++.+...|+.|++.||+|||. .
T Consensus 199 ~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~----~ 274 (573)
T 3uto_A 199 ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHE----N 274 (573)
T ss_dssp HHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 346679999999999999999999999999999999999999999998666679999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|||+|+.. .....+||+.|||||++.+..|+.++||||+||++|||++|+.
T Consensus 275 ~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~ 354 (573)
T 3uto_A 275 NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLS 354 (573)
T ss_dssp TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCC
T ss_pred CeeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 89999999531 1123369999999999999999999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.+.. ...+...+..... .... +.+...+..+.+|+.+||+.||.+|||+.|+++
T Consensus 355 Pf~~~~--~~~~~~~i~~~~~-~~~~-------------~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 355 PFGGEN--DDETLRNVKSCDW-NMDD-------------SAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp SSCCSS--HHHHHHHHHTTCC-CCCS-------------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCcC--HHHHHHHHHhCCC-CCCc-------------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 997532 1112222211110 0000 012233456789999999999999999999976
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-29 Score=268.21 Aligned_cols=302 Identities=19% Similarity=0.171 Sum_probs=173.3
Q ss_pred cccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEc
Q 040540 123 SKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDL 202 (669)
Q Consensus 123 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 202 (669)
++|++|+|++|.+++..|..|..+++|++|++++|.+++..| ++.+++|++|++++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 467777777777776666667777777777777776665544 6666666666666666654322 255666666
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccc
Q 040540 203 ADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSG 282 (669)
Q Consensus 203 ~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~ 282 (669)
++|.+++..+. . +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 107 ~~N~l~~~~~~---~-------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 107 ANNNISRVSCS---R-------------------------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CSSCCCCEEEC---C-------------------------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred cCCcCCCCCcc---c-------------------------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 66666544322 2 3344455555555544444445555555555555555555
Q ss_pred cCccccC-CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecC
Q 040540 283 HIPNTFG-NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGF 361 (669)
Q Consensus 283 ~~p~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~ 361 (669)
..|..+. .+++|+.|++++|.+++.+ ....+++|+.|++++|.+++..+. + ..+++|..+++++
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~-~----~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVK----------GQVVFAKLKTLDLSSNKLAFMGPE-F----QSAAGVTWISLRN 223 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEE----------CCCCCTTCCEEECCSSCCCEECGG-G----GGGTTCSEEECTT
T ss_pred cChHHHhhhCCcccEEecCCCcccccc----------ccccCCCCCEEECCCCCCCCCCHh-H----cCCCCccEEEecC
Confidence 4444443 4555556666555554431 122355666666666666654443 2 1345666777777
Q ss_pred cccCCCCCccccccCCCcEEecCCCccc-ccCchhhcCCCCCCeeeCcCCc-cceeCcccccCCCCCCE---EECC--CC
Q 040540 362 NDLNGTIPTSIGTLQQLQGFYVPENNLQ-GYVPHDLCHLERLNILNLSGNK-LSGHIPPCLASLTSLRE---LHLG--SN 434 (669)
Q Consensus 362 n~l~~~~~~~~~~l~~L~~l~l~~n~~~-~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~l~~l~~L~~---L~l~--~N 434 (669)
|.+.+ +|..+..+++|+.+++++|.+. +.+|..+..+..|+.++++.+. +.+..|. ....+.... +... +.
T Consensus 224 N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~c~~~~~~~~~~~~~~~~~~ 301 (487)
T 3oja_A 224 NKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE-ECTVPTLGHYGAYCCEDLPA 301 (487)
T ss_dssp SCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSC-CCSSTTCEEETTEEECCCSC
T ss_pred CcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcc-cccCCccccccccccccccc
Confidence 77764 5566777888999999999887 6677778878777777775211 1111110 011111100 0000 00
Q ss_pred cce----------ecCCcccccccCchhhhhhccccccccceeccccccccc
Q 040540 435 KLS----------SSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDF 476 (669)
Q Consensus 435 ~l~----------~~~p~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 476 (669)
.+. ...-...+.+.|..|++.+.+++|+|+|+++|||..+..
T Consensus 302 ~~~~~l~~~~~~~~~~~~~~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~~ 353 (487)
T 3oja_A 302 PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353 (487)
T ss_dssp HHHHHHHHHHHHHHCSCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred hhhhHHHHHHHHhhhhcccccHHHHHHHHHHHhcccccchhhHHHHhcChHH
Confidence 000 000112235689999999999999999999999987543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-29 Score=255.92 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=169.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcC-cccCCcccC-------CCCCCCEEEccCCcCCccCCccc--c
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNF-HGHLPKELG-------QLRRLRVMSLAYNKLSGSFPSWI--G 120 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~~--~ 120 (669)
.+++.|++++|.+ .+|..+... |+.|+|++|.+ .+.+|..+. ++++|++|+|++|++.+.+|..+ +
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3466667777777 555544433 77777777777 345555554 67777777777777777777665 7
Q ss_pred CCcccccccccccCccccCCcccCCC-----CCCCeeecccccccccCCcccCCCCCCCEEEcccCCCccc--CCccc--
Q 040540 121 VLSKLRILRLDYNNFTGPIPNSLFNL-----SRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ--IPTEI-- 191 (669)
Q Consensus 121 ~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~--~p~~~-- 191 (669)
.+++|++|+|++|++++. |..++.+ ++|++|++++|.+.+..|..++.+++|++|++++|++.+. .|..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 777777777777777765 6666665 7777777777777777777777777777777777777654 23333
Q ss_pred cCCCCCCEEEccCCCCCCC--CC-ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCC
Q 040540 192 GSLQNLKNLDLADNKLSGL--IP-PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNAT 268 (669)
Q Consensus 192 ~~l~~L~~L~l~~N~l~~~--~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 268 (669)
+.+++|++|++++|.+++. ++ ..+.++++|++|++++|.+++..|...+..+++|++|++++|+++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 6777777777777777732 22 223466777777777777776554443335677777777777776 5565555 6
Q ss_pred CCCEEeCCCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 269 KLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 269 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
+|+.|++++|.+.+. |. +..+++|+.|++++|.+++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777777777777755 44 7777777777777777654
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-28 Score=254.61 Aligned_cols=197 Identities=19% Similarity=0.183 Sum_probs=140.3
Q ss_pred cCchhhhhhccccccccceecccccc------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+.+|+.+++.++|||||++++++.. ....|||||||+ |+|.+++.+ ...+++.....|+.|+++||+|||.
T Consensus 99 ~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~~i~~-~~~l~~~~~~~~~~qil~al~ylH~ 176 (398)
T 4b99_A 99 RTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLHQIIHS-SQPLTLEHVRYFLYQLLRGLKYMHS 176 (398)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHHHHHTS-SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999987653 356799999996 789999975 4568999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC-CcCccccchhhHHH
Q 040540 522 GHSSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVL 571 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvi 571 (669)
.+|+|||+|+.. ...+.+||+.|||||++.+. .|+.++||||+||+
T Consensus 177 ----~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~i 252 (398)
T 4b99_A 177 ----AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCI 252 (398)
T ss_dssp ----TTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHH
T ss_pred ----CcCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHH
Confidence 489999999530 11234799999999998774 57999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhC--CC-Cccccccc--------cccc-hhhhh-hhhHHHHHHHHHHHhhccc
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESL--PH-RLSEVVDT--------NLVR-EEQAF-SAKMDCLLSIMDLALDCCM 638 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~--~~-~~~~~~~~--------~~~~-~~~~~-~~~~~~~~~~~~l~~~c~~ 638 (669)
+|||+||+.||.+.. ...+...+.... +. .....+.. .+.. ....+ .........+.+++.+|++
T Consensus 253 l~ell~G~~pF~g~~--~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~ 330 (398)
T 4b99_A 253 FGEMLARRQLFPGKN--YVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLR 330 (398)
T ss_dssp HHHHHHTSCSSCCSS--HHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSC
T ss_pred HHHHHHCCCCCCCCC--HHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCc
Confidence 999999999997532 111111111111 10 00000000 0000 00000 0011234567899999999
Q ss_pred CCCCCCCCHHHHHH
Q 040540 639 ESPDKRMHMTDAAA 652 (669)
Q Consensus 639 ~~P~~Rps~~~v~~ 652 (669)
.||++|||+.|+++
T Consensus 331 ~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 331 FEPSARISAAAALR 344 (398)
T ss_dssp SSTTTSCCHHHHTT
T ss_pred CChhHCcCHHHHhc
Confidence 99999999999875
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=244.76 Aligned_cols=204 Identities=30% Similarity=0.502 Sum_probs=163.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+..+..++|||++++++++...+..++||||+++|+|.+++.... ..+++..+..++.++++|++|||.
T Consensus 80 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~-- 157 (321)
T 2qkw_B 80 EEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT-- 157 (321)
T ss_dssp HHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC--
Confidence 456789999999999999999999999999999999999999999997533 358999999999999999999995
Q ss_pred CCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 524 SSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 524 ~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+
T Consensus 158 --~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell 235 (321)
T 2qkw_B 158 --RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVL 235 (321)
T ss_dssp --TTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHH
T ss_pred --CCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHH
Confidence 489999998541 011124899999999998888999999999999999999
Q ss_pred hCCCCCCcCCC-CCccHHHHHHHhCC-CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 577 TRKRPTDEMFT-GEMSLRRWVKESLP-HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 577 tg~~p~~~~~~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
||+.||..... +......|...... ......+++.+... ...+.+..+.+++.+||+.||++|||+.||++.|
T Consensus 236 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L 310 (321)
T 2qkw_B 236 CARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADK-----IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310 (321)
T ss_dssp HCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTC-----SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred hCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccc-----cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence 99999976433 33445666543322 22334444443221 2456778899999999999999999999999999
Q ss_pred HHhHH
Q 040540 655 KKIKV 659 (669)
Q Consensus 655 ~~~~~ 659 (669)
+.+.+
T Consensus 311 ~~~l~ 315 (321)
T 2qkw_B 311 EYALR 315 (321)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98865
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=247.31 Aligned_cols=238 Identities=22% Similarity=0.245 Sum_probs=213.1
Q ss_pred ccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 040540 41 WAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111 (669)
Q Consensus 41 ~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 111 (669)
|..+.|... ...++.|+|++|++.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 456777542 25689999999999998889999999999999999999988889999999999999999999
Q ss_pred CccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccc-ccccCCcccCCCCCCCEEEcccCCCcccCCcc
Q 040540 112 SGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI-IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTE 190 (669)
Q Consensus 112 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~ 190 (669)
++..+..|..+++|++|+|++|.++...+..|.++++|+.|++++|+ +....+..|.++++|++|++++|+++ .+| .
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~ 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-C
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-c
Confidence 97777789999999999999999998888899999999999999955 44444557999999999999999998 455 4
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCC
Q 040540 191 IGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKL 270 (669)
Q Consensus 191 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 270 (669)
+..+++|++|+|++|.+++..|..|.++++|+.|++++|.+++..+..+. .+++|++|+|++|++++..+..+..+++|
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCC
Confidence 88999999999999999999999999999999999999999865555554 79999999999999998888889999999
Q ss_pred CEEeCCCCCcc
Q 040540 271 IGLDLGFNSFS 281 (669)
Q Consensus 271 ~~L~ls~n~l~ 281 (669)
+.|++++|.+.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 99999999875
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=233.16 Aligned_cols=225 Identities=21% Similarity=0.204 Sum_probs=152.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.++.+++++.. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 567888888763 44433 468888899988888777777888888888888888888777888888888888888888
Q ss_pred C-ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCC
Q 040540 134 N-FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 134 ~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
. ++...|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..|+.+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665556667777777777777776666666666666666666666666665555556666666666666666554433
Q ss_pred ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCC
Q 040540 213 PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 292 (669)
..+.. +++|++|++++|++.+..|..+..+++|+.|++++|.+.+..+..+..++
T Consensus 171 ~~~~~-------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 171 RAFRG-------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTT-------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HHhcC-------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 33444 45555555555555555555566666666666666666655555566667
Q ss_pred CCCEEEccCCcccc
Q 040540 293 HLSVLNVMMNNLTT 306 (669)
Q Consensus 293 ~L~~L~l~~N~l~~ 306 (669)
+|+.|++++|.+..
T Consensus 226 ~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 226 ALQYLRLNDNPWVC 239 (285)
T ss_dssp TCCEEECCSSCEEC
T ss_pred ccCEEeccCCCccC
Confidence 77777777666654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=231.32 Aligned_cols=254 Identities=23% Similarity=0.241 Sum_probs=167.2
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
++++.+++.+. .+|..+ .++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777776 345433 357777777777777666666777777777777777776655666666666666666666
Q ss_pred c-ccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccc
Q 040540 158 I-IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLP 236 (669)
Q Consensus 158 ~-l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (669)
. +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. +
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------~ 145 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-------------------------P 145 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------------------C
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-------------------------C
Confidence 4 4444455555555555555555555544444455555555555555544433 2
Q ss_pred hhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCccccc
Q 040540 237 STIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSF 316 (669)
Q Consensus 237 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 316 (669)
...+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|++++.+.
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------- 218 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------- 218 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-------
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-------
Confidence 2222256777777777777776666678899999999999999999889999999999999999999887531
Q ss_pred ccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccc
Q 040540 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372 (669)
Q Consensus 317 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 372 (669)
..+..+++|+.|++++|++....+... + ...+..+....+.+....|..+
T Consensus 219 -~~~~~l~~L~~L~l~~N~~~c~~~~~~--~---~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 219 -EALAPLRALQYLRLNDNPWVCDCRARP--L---WAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp -HHHTTCTTCCEEECCSSCEECSGGGHH--H---HHHHHHCCSEECCCBEEESGGG
T ss_pred -HHcccCcccCEEeccCCCccCCCCcHH--H---HHHHHhcccccCccccCCchHh
Confidence 336778999999999999876543221 0 1112223344555555555554
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-28 Score=250.16 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=111.1
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+.+|+.++..+ .||||+++++++...+..++|||||++|+|.+++.. +++.+...|+.|++.||+|||. .
T Consensus 65 ~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~~~----l~~~~~~~~~~qll~al~ylH~----~ 136 (361)
T 4f9c_A 65 RIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNS----LSFQEVREYMLNLFKALKRIHQ----F 136 (361)
T ss_dssp HHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCCCCHHHHHTT----CCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCcccHHHHHcC----CCHHHHHHHHHHHHHHHHHHHH----C
Confidence 345788888887 699999999999999999999999999999999952 7888999999999999999995 4
Q ss_pred CeeecCCCCccc------------------------------------------------------ccccccccccCccc
Q 040540 527 PIIHCEGEDSVT------------------------------------------------------QTTTMATIGYMAPE 552 (669)
Q Consensus 527 ~i~h~d~~~~~~------------------------------------------------------~~~~~gt~~y~aPE 552 (669)
+|+|||+|+... .++.+||+.|||||
T Consensus 137 gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE 216 (361)
T 4f9c_A 137 GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPE 216 (361)
T ss_dssp TEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHH
T ss_pred CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHH
Confidence 899999995410 01235999999999
Q ss_pred cccCC-CcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 553 YGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 553 ~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
++.+. .|+.++||||+||++|||+||+.||..
T Consensus 217 ~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~ 249 (361)
T 4f9c_A 217 VLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYK 249 (361)
T ss_dssp HHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred HHcCCCCCCCccchhhhHHHHHHHHHCCCCCCC
Confidence 98775 589999999999999999999999965
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=244.04 Aligned_cols=204 Identities=32% Similarity=0.484 Sum_probs=164.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|+..+..++|||+++++++|......++||||+++|+|.++++... ..+++..+..|+.++++|++|||.. .
T Consensus 73 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~ 151 (326)
T 3uim_A 73 QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDH-C 151 (326)
T ss_dssp HHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHHHHhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence 46779999999999999999999999999999999999999999998632 3589999999999999999999964 2
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.++++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||
T Consensus 152 ~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g 231 (326)
T 3uim_A 152 DPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITG 231 (326)
T ss_dssp SSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHC
T ss_pred CCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhC
Confidence 4589999999531 01112389999999999888899999999999999999999
Q ss_pred CCCCCc---CCCCCccHHHHHHHhCCCC-ccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 579 KRPTDE---MFTGEMSLRRWVKESLPHR-LSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 579 ~~p~~~---~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
+.||.. .......+.+|+....... .....+..+.. ....+....+.+++.+||+.||.+|||+.||++.|
T Consensus 232 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L 306 (326)
T 3uim_A 232 QRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQG-----NYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306 (326)
T ss_dssp CCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTT-----SCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHH
T ss_pred CCcccccccccccchhHHHHHHHHhhchhhhhhcChhhcc-----ccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHh
Confidence 999963 2234456777776655432 33333333322 23567778899999999999999999999999999
Q ss_pred HHh
Q 040540 655 KKI 657 (669)
Q Consensus 655 ~~~ 657 (669)
++.
T Consensus 307 ~~~ 309 (326)
T 3uim_A 307 EGD 309 (326)
T ss_dssp HTS
T ss_pred cCc
Confidence 863
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-28 Score=260.95 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=138.4
Q ss_pred hhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecC
Q 040540 453 CEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE 532 (669)
Q Consensus 453 ~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d 532 (669)
+.++..++|||||++++++...+..|+|||||++|+|.++|.+. ..+++.....|+.||+.||+|||. .+|||||
T Consensus 243 l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~~~-~~l~E~~a~~y~~qIl~aL~yLH~----~gIiHRD 317 (689)
T 3v5w_A 243 LSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH-GVFSEADMRFYAAEIILGLEHMHN----RFVVYRD 317 (689)
T ss_dssp HHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHT----TTEECCC
T ss_pred HHHHhhCCCCCEeEEEEEEEECCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CCccccC
Confidence 55667789999999999999999999999999999999999864 458999999999999999999994 5899999
Q ss_pred CCCc-----------------------ccccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCCCcCCCC
Q 040540 533 GEDS-----------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 588 (669)
Q Consensus 533 ~~~~-----------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~ 588 (669)
+|+. ....+.+||+.|||||++.+ ..|+.++||||+||++|||+||+.||......
T Consensus 318 LKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~ 397 (689)
T 3v5w_A 318 LKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK 397 (689)
T ss_dssp CSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC
T ss_pred CchHHeEEeCCCCEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence 9954 12234579999999999865 57999999999999999999999999753322
Q ss_pred Cc-cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 589 EM-SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 589 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
.. .+....... +.. .+...+..+.+++.+|++.||.+|++ ++||.+
T Consensus 398 ~~~~i~~~i~~~-~~~-----------------~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 398 DKHEIDRMTLTM-AVE-----------------LPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp CHHHHHHHHHHC-CCC-----------------CCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred HHHHHHHhhcCC-CCC-----------------CCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 21 111111111 100 11223456789999999999999998 566643
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-28 Score=246.33 Aligned_cols=192 Identities=22% Similarity=0.392 Sum_probs=156.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.++++.....+++.++..++.++++||+|||..
T Consensus 52 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---- 127 (310)
T 3s95_A 52 RTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM---- 127 (310)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 4577899999999999999999999988889999999999999999987667799999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------------------ccccccccccCccccccCCCcCccccchh
Q 040540 527 PIIHCEGEDSVT---------------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYS 567 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s 567 (669)
+++|+|+|+... .....||+.|+|||++.+..++.++||||
T Consensus 128 ~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s 207 (310)
T 3s95_A 128 NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFS 207 (310)
T ss_dssp TEECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHH
T ss_pred CccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHH
Confidence 799999995410 00335899999999999988999999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCC----ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 568 YGVLLMETFTRKRPTDEMFTGE----MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
|||++|||++|..|+....... ........... +..++..+.+++.+||+.||++
T Consensus 208 lG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~~li~~~l~~dP~~ 266 (310)
T 3s95_A 208 FGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYC---------------------PPNCPPSFFPITVRCCDLDPEK 266 (310)
T ss_dssp HHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTC---------------------CTTCCTTHHHHHHHHTCSSGGG
T ss_pred HHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccC---------------------CCCCCHHHHHHHHHHccCChhh
Confidence 9999999999999986533211 11111111111 1122345789999999999999
Q ss_pred CCCHHHHHHHHHHhHHHhhh
Q 040540 644 RMHMTDAAAKLKKIKVKFLD 663 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~~~~ 663 (669)
|||+.|+++.|++++..+..
T Consensus 267 Rps~~~l~~~L~~l~~~~~~ 286 (310)
T 3s95_A 267 RPSFVKLEHWLETLRMHLAG 286 (310)
T ss_dssp SCCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhccC
Confidence 99999999999999887654
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-27 Score=250.96 Aligned_cols=191 Identities=23% Similarity=0.378 Sum_probs=153.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||+++++++|......++||||+++|+|.++++..+..+++.....++.|+++|++|||. .
T Consensus 157 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~----~ 232 (377)
T 3cbl_A 157 AKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLES----K 232 (377)
T ss_dssp TTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 467889999999999999999999998888999999999999999998766678999999999999999999995 4
Q ss_pred CeeecCCCCccc-----------------------c----cccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSVT-----------------------Q----TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------~----~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+++|||+|+... . ....++..|+|||++....++.++|||||||++|||+| |
T Consensus 233 ~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g 312 (377)
T 3cbl_A 233 CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLG 312 (377)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTS
T ss_pred CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCC
Confidence 799999995410 0 01124667999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... .......+...... +.+..++..+.+++.+||+.||++|||+.++++.|++++
T Consensus 313 ~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 313 ASPYPNLS--NQQTREFVEKGGRL-----------------PCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp CCSSTTSC--HHHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 99987632 12223333222111 011223456789999999999999999999999999997
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
.+
T Consensus 374 ~~ 375 (377)
T 3cbl_A 374 KR 375 (377)
T ss_dssp HH
T ss_pred hh
Confidence 65
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-27 Score=239.56 Aligned_cols=202 Identities=18% Similarity=0.240 Sum_probs=148.9
Q ss_pred Cchhhhhhccccccccceeccccccccc----cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC--
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDF----KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG-- 522 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~----~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~-- 522 (669)
+..|+..+..++|||++++++++..... .++||||+++|+|.++++.. .+++..+..++.++++|++|||..
T Consensus 65 ~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~LH~~~~ 142 (322)
T 3soc_A 65 NEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIP 142 (322)
T ss_dssp HHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3457888999999999999999876443 58999999999999999763 489999999999999999999942
Q ss_pred ----CCCCCeeecCCCCcc---------------------------cccccccccccCccccccC-----CCcCccccch
Q 040540 523 ----HSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE-----GIVSAKCDVY 566 (669)
Q Consensus 523 ----~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~ 566 (669)
...++|+|||+|+.. ......||+.|+|||++.+ ..++.++|||
T Consensus 143 ~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diw 222 (322)
T 3soc_A 143 GLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMY 222 (322)
T ss_dssp EETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHH
T ss_pred ccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhH
Confidence 001289999999531 0112358999999999876 3467799999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCC-c----------cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGE-M----------SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~-~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
||||++|||+||+.||....... . ....+.......... +.+.. ......++..+.+++.+
T Consensus 223 slG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~l~~li~~ 294 (322)
T 3soc_A 223 AMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKR----PVLRD----YWQKHAGMAMLCETIEE 294 (322)
T ss_dssp HHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC----CCCCG----GGGSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCC----CCccc----cccccchHHHHHHHHHH
Confidence 99999999999999997533211 1 111121111111111 11111 11123456678999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
||+.||++|||+.||++.|+++.+.
T Consensus 295 cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 295 CWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HccCChhhCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999765
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=246.86 Aligned_cols=192 Identities=21% Similarity=0.380 Sum_probs=153.3
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+.++..+ +|||+++++++|...+..++||||+++|+|.+++.... ..+++.++..++.
T Consensus 131 ~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (370)
T 2psq_A 131 SDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTY 210 (370)
T ss_dssp HHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHH
Confidence 4567899999999 89999999999999999999999999999999997643 2478899999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
|+++||+|||. .+|+|||+|+.. ......||+.|+|||++.+..++.++
T Consensus 211 qi~~aL~~LH~----~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~ 286 (370)
T 2psq_A 211 QLARGMEYLAS----QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQS 286 (370)
T ss_dssp HHHHHHHHHHH----TTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHh----CCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHH
Confidence 99999999995 479999999531 01112367889999999888899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||+| |+.||.... ...+...+....... .+..+...+.+++.+||+.||+
T Consensus 287 DvwslG~il~ellt~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dP~ 347 (370)
T 2psq_A 287 DVWSFGVLMWEIFTLGGSPYPGIP--VEELFKLLKEGHRMD-----------------KPANCTNELYMMMRDCWHAVPS 347 (370)
T ss_dssp HHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCCCC-----------------CCTTSCHHHHHHHHHHTCSSGG
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHhcCCCCC-----------------CCCCCCHHHHHHHHHHcCCChh
Confidence 99999999999999 999987632 222333332221110 0122345678999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHh
Q 040540 643 KRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~~ 661 (669)
+||++.|+++.|+++....
T Consensus 348 ~Rpt~~ell~~L~~il~~~ 366 (370)
T 2psq_A 348 QRPTFKQLVEDLDRILTLT 366 (370)
T ss_dssp GSCCHHHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHh
Confidence 9999999999999987654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=225.71 Aligned_cols=215 Identities=25% Similarity=0.306 Sum_probs=157.5
Q ss_pred CCCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccC
Q 040540 36 YPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115 (669)
Q Consensus 36 ~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 115 (669)
.+.|.|.|+.|... ..++.+++++++++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++....
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36899999988653 356789999999984 565543 68999999999999877778999999999999999998666
Q ss_pred CccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCC
Q 040540 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQ 195 (669)
Q Consensus 116 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~ 195 (669)
+..|.++++|++|+|++|++++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 66778899999999999999876666777888888888888887777777777777777777777777766666677777
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCc
Q 040540 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255 (669)
Q Consensus 196 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~ 255 (669)
+|++|++++|.+++..+..+.++++|++|++++|.++ .+|...+..+++|++|++++|.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence 7777777777777655555555555555555555554 2333222234444444444443
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=238.43 Aligned_cols=193 Identities=23% Similarity=0.341 Sum_probs=148.8
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCC-ccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+..+..++|||++++++++... ...++||||+++|+|.++++.... .+++..+..++.++++|++|||..
T Consensus 52 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~- 130 (271)
T 3kmu_A 52 RDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL- 130 (271)
T ss_dssp HHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 4577899999999999999999998876 677999999999999999986443 589999999999999999999954
Q ss_pred CCCCeeecCCCCcc--------------------cccccccccccCccccccCCCcC---ccccchhhHHHHHHHHhCCC
Q 040540 524 SSAPIIHCEGEDSV--------------------TQTTTMATIGYMAPEYGSEGIVS---AKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 524 ~~~~i~h~d~~~~~--------------------~~~~~~gt~~y~aPE~~~~~~~~---~~~Dv~s~Gvil~el~tg~~ 580 (669)
.++++|+|+|+.. ......||+.|+|||.+.+..++ .++|||||||++|||+||+.
T Consensus 131 -~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~ 209 (271)
T 3kmu_A 131 -EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREV 209 (271)
T ss_dssp -SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSC
T ss_pred -CCceecCCCccceEEEcCCcceeEEeccceeeecccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 2349999999541 11233589999999998775544 48999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
||....... ............ .+ +...+..+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 210 p~~~~~~~~-~~~~~~~~~~~~--------~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 210 PFADLSNME-IGMKVALEGLRP--------TI---------PPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp TTTTSCHHH-HHHHHHHSCCCC--------CC---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred CccccChHH-HHHHHHhcCCCC--------CC---------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 997532111 011111111111 01 11233457899999999999999999999999998864
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=243.64 Aligned_cols=193 Identities=25% Similarity=0.395 Sum_probs=153.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.++++.....+++..+..++.++++||+|||. .
T Consensus 95 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~----~ 170 (325)
T 3kul_A 95 RDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSD----L 170 (325)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 456789999999999999999999999899999999999999999998766679999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||++
T Consensus 171 ~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~ 250 (325)
T 3kul_A 171 GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAY 250 (325)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTT
T ss_pred CeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcC
Confidence 79999999531 0011125668999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+...... +.+..++..+.+++.+||..||++|||+.||++.|+++
T Consensus 251 g~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l 311 (325)
T 3kul_A 251 GERPYWNMT--NRDVISSVEEGYRL-----------------PAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311 (325)
T ss_dssp SCCTTTTSC--HHHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcccCC--HHHHHHHHHcCCCC-----------------CCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 999986532 11222222221111 01123345678999999999999999999999999998
Q ss_pred HHHhh
Q 040540 658 KVKFL 662 (669)
Q Consensus 658 ~~~~~ 662 (669)
.....
T Consensus 312 ~~~~~ 316 (325)
T 3kul_A 312 IRSPE 316 (325)
T ss_dssp HHSCC
T ss_pred HhCcc
Confidence 76643
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-27 Score=250.17 Aligned_cols=191 Identities=24% Similarity=0.412 Sum_probs=150.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||+++++++|......++||||+++|+|.++++..+..+++.++..|+.++++||+|||..
T Consensus 91 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---- 166 (373)
T 2qol_A 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM---- 166 (373)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4577899999999999999999999998899999999999999999987666799999999999999999999954
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+... .....+|..|+|||++.+..++.++|||||||++|||++
T Consensus 167 ~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~ 246 (373)
T 2qol_A 167 GYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246 (373)
T ss_dssp TCCCSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhC
Confidence 799999995410 001124668999999988889999999999999999998
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+..... .+.+..++..+.+++.+||+.||.+||+|.+|+++|+++
T Consensus 247 g~~P~~~~~--~~~~~~~i~~~~~-----------------~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~ 307 (373)
T 2qol_A 247 GERPYWEMS--NQDVIKAVDEGYR-----------------LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 307 (373)
T ss_dssp C-CTTTTCC--HHHHHHHHHTTEE-----------------CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCCC--HHHHHHHHHcCCC-----------------CCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHH
Confidence 999997532 1122222221110 001123345678999999999999999999999999998
Q ss_pred HHH
Q 040540 658 KVK 660 (669)
Q Consensus 658 ~~~ 660 (669)
...
T Consensus 308 ~~~ 310 (373)
T 2qol_A 308 IRN 310 (373)
T ss_dssp HHC
T ss_pred HhC
Confidence 754
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-27 Score=239.66 Aligned_cols=194 Identities=23% Similarity=0.353 Sum_probs=149.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCC--ccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++..... .+++..+..++.++++|++|||..
T Consensus 79 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-- 156 (309)
T 3p86_A 79 NEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-- 156 (309)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC--
Confidence 3567899999999999999999999998899999999999999999986432 389999999999999999999954
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.++++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+
T Consensus 157 ~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~ 236 (309)
T 3p86_A 157 NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQ 236 (309)
T ss_dssp SSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCC
T ss_pred CCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCC
Confidence 2349999999541 012235899999999999988999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||..... ......+...... .. .+......+.+++.+||+.||.+|||+.++++.|+.+..
T Consensus 237 ~Pf~~~~~--~~~~~~~~~~~~~-------~~---------~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~ 298 (309)
T 3p86_A 237 QPWGNLNP--AQVVAAVGFKCKR-------LE---------IPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK 298 (309)
T ss_dssp CTTTTSCH--HHHHHHHHHSCCC-------CC---------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred CCCCCCCH--HHHHHHHHhcCCC-------CC---------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 99975321 1122222111100 00 011233457899999999999999999999999998864
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 299 ~ 299 (309)
T 3p86_A 299 S 299 (309)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=232.24 Aligned_cols=191 Identities=24% Similarity=0.352 Sum_probs=153.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+.+++|||++++++++......++||||+++|+|.+++......+++..+..++.++++|++|||..
T Consensus 50 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---- 125 (269)
T 4hcu_A 50 EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---- 125 (269)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhC----
Confidence 3567899999999999999999999998889999999999999999987667789999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+|+.. ......||+.|+|||...+..++.++||||+|+++|||+| |+
T Consensus 126 ~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~ 205 (269)
T 4hcu_A 126 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGK 205 (269)
T ss_dssp TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CeecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCC
Confidence 79999999541 0111235678999999988889999999999999999999 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... ...+...+........ +......+.+++.+||+.||++||++.|+++.|+++.+
T Consensus 206 ~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 206 IPYENRS--NSEVVEDISTGFRLYK-----------------PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp CTTTTCC--HHHHHHHHHTTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHhcCccCCC-----------------CCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 9987532 1122222222211100 11123457899999999999999999999999999876
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
+
T Consensus 267 ~ 267 (269)
T 4hcu_A 267 S 267 (269)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-28 Score=243.41 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=150.6
Q ss_pred ccCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|||++++++++.. ....++||||+++|+|.+++......+++..+..++.++++|++|||.
T Consensus 56 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~--- 132 (295)
T 3ugc_A 56 RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT--- 132 (295)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhc---
Confidence 456789999999999999999998855 345789999999999999998766679999999999999999999995
Q ss_pred CCCeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+... .....|+..|+|||.+.+..++.++|||||||++|||+
T Consensus 133 -~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~ 211 (295)
T 3ugc_A 133 -KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 211 (295)
T ss_dssp -TTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred -CCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 4799999995410 01123667799999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcccccccc---ccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTN---LVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||..|+..... .+................ ......+.+.+..++..+.+++.+||+.||++|||+.|+++.
T Consensus 212 ~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~ 285 (295)
T 3ugc_A 212 TYIEKSKSPPA------EFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALR 285 (295)
T ss_dssp HTTCTTCSHHH------HHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred hcccccCCChH------HHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence 99998764210 000000000000000000 000000111123445678899999999999999999999999
Q ss_pred HHHhHHHh
Q 040540 654 LKKIKVKF 661 (669)
Q Consensus 654 l~~~~~~~ 661 (669)
|+++.+.+
T Consensus 286 L~~l~~~l 293 (295)
T 3ugc_A 286 VDQIRDNM 293 (295)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhc
Confidence 99998765
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=234.71 Aligned_cols=196 Identities=24% Similarity=0.378 Sum_probs=149.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCC--ccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+.+++|||++++++++.. ..++||||+++|+|.+++..... .+++.....++.++++|++|||..+
T Consensus 46 ~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~- 122 (307)
T 2eva_A 46 KAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ- 122 (307)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCC-
Confidence 456789999999999999999998874 47899999999999999986432 4688889999999999999999631
Q ss_pred CCCeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 525 SAPIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 525 ~~~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
..+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.|
T Consensus 123 ~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p 202 (307)
T 2eva_A 123 PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKP 202 (307)
T ss_dssp SSCCCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCT
T ss_pred CCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 2579999999541 01122489999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
|.........+...+....... . ....+..+.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~--------~---------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 265 (307)
T 2eva_A 203 FDEIGGPAFRIMWAVHNGTRPP--------L---------IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF 265 (307)
T ss_dssp TTTTCSSHHHHHHHHHTTCCCC--------C---------BTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred chhhCccHHHHHHHHhcCCCCC--------c---------ccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence 9764322211111111111110 0 1122345789999999999999999999999999987665
Q ss_pred h
Q 040540 662 L 662 (669)
Q Consensus 662 ~ 662 (669)
.
T Consensus 266 ~ 266 (307)
T 2eva_A 266 P 266 (307)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=237.70 Aligned_cols=246 Identities=24% Similarity=0.224 Sum_probs=142.8
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++..+++.+.+...+...+..+++|++|+|++|.+.+..|..|..+++|++|+|++|++.+..| +..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45666777777765555555666777888888888777666777777788888888777765443 7777777777777
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+|++++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---------------------------~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---------------------------GQGKKNIYLANNKITMLR 136 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---------------------------CSSCEEEECCSSCCCSGG
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---------------------------cCCCCEEECCCCCCCCcc
Confidence 77776422 2255555555555554433222 334455555555555444
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
|..+..+++|++|++++|.+++..+..+...+++|++|++++|.+.+.. ....+++|+.|++++|.+.+..+ .+..+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l 213 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSA 213 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhccc
Confidence 4444445555555555555544334444334555555555555554431 12235566666666666654333 35566
Q ss_pred CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCc-cccchh
Q 040540 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG-GILPQL 343 (669)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~ 343 (669)
++|+.|++++|+++..+ ..+..+++|+.|++++|++. +..+..
T Consensus 214 ~~L~~L~L~~N~l~~l~---------~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 214 AGVTWISLRNNKLVLIE---------KALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp TTCSEEECTTSCCCEEC---------TTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred CcccEEECcCCcccchh---------hHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 66666666666665432 12345566777777777766 333333
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-26 Score=232.32 Aligned_cols=201 Identities=25% Similarity=0.374 Sum_probs=155.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC--CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH--NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~--~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|||++++++++......++||||+++|+|.+++... ...+++..+..++.++++||+|||..
T Consensus 75 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-- 152 (307)
T 2nru_A 75 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN-- 152 (307)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 35678999999999999999999999988999999999999999999742 34689999999999999999999954
Q ss_pred CCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 525 SAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
+++|+|+++.. ......||+.|+|||...+ .++.++|||||||++|||+|
T Consensus 153 --~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~ 229 (307)
T 2nru_A 153 --HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIIT 229 (307)
T ss_dssp --TEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHH
T ss_pred --CeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHH
Confidence 79999998531 0112358999999998765 48899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhC--CCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESL--PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
|+.||....... .+..+..... ...+.+.+++.+.. .+......+.+++.+||..||.+|||+.+|++.|+
T Consensus 230 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~ 302 (307)
T 2nru_A 230 GLPAVDEHREPQ-LLLDIKEEIEDEEKTIEDYIDKKMND------ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQ 302 (307)
T ss_dssp CCCSBCTTBSSS-BTTHHHHHHHTTSCCHHHHSCSSCSC------CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred CCCCcccCcchH-HHHHHHHHhhhhhhhhhhhccccccc------cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 999997643322 1222222111 11222333333221 24456778899999999999999999999999999
Q ss_pred HhHH
Q 040540 656 KIKV 659 (669)
Q Consensus 656 ~~~~ 659 (669)
++..
T Consensus 303 ~l~~ 306 (307)
T 2nru_A 303 EMTA 306 (307)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 8864
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-26 Score=230.83 Aligned_cols=198 Identities=24% Similarity=0.310 Sum_probs=145.6
Q ss_pred chhhhhhcc--ccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 450 DSECEVLRN--VRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 450 ~~e~~~l~~--l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
..|.+++.. ++|||++++++++.. ....++||||+++|+|.++++. ..+++..+..|+.++++|++|||...
T Consensus 48 ~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~ 125 (301)
T 3q4u_A 48 FRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL--TTLDTVSCLRIVLSIASGLAHLHIEI 125 (301)
T ss_dssp HHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHSCB
T ss_pred HHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhh--cccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555544 789999999998654 3457899999999999999964 45899999999999999999999321
Q ss_pred ----CCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC------CcCcccc
Q 040540 524 ----SSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG------IVSAKCD 564 (669)
Q Consensus 524 ----~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~------~~~~~~D 564 (669)
...+++|||+|+.. ......||+.|+|||++.+. .++.++|
T Consensus 126 ~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~D 205 (301)
T 3q4u_A 126 FGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVD 205 (301)
T ss_dssp CSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHH
T ss_pred hhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhh
Confidence 14689999999531 01112689999999998776 4567999
Q ss_pred chhhHHHHHHHHhC----------CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHh
Q 040540 565 VYSYGVLLMETFTR----------KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLAL 634 (669)
Q Consensus 565 v~s~Gvil~el~tg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 634 (669)
||||||++|||+|| +.||....................... +.+... ......+..+.+++.
T Consensus 206 vwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~l~~li~ 277 (301)
T 3q4u_A 206 IWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQR----PNIPNR----WFSDPTLTSLAKLMK 277 (301)
T ss_dssp HHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC----CCCCGG----GGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCC----CCCChh----hccCccHHHHHHHHH
Confidence 99999999999999 888866544443333332222111111 111110 113456778899999
Q ss_pred hcccCCCCCCCCHHHHHHHHHHh
Q 040540 635 DCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 635 ~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
+||+.||++|||+.||++.|+++
T Consensus 278 ~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 278 ECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp HHCCSSGGGSCCHHHHHHHHHHH
T ss_pred HHhhcChhhCCCHHHHHHHHhcc
Confidence 99999999999999999999876
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=238.46 Aligned_cols=189 Identities=19% Similarity=0.320 Sum_probs=150.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||+++++++|.... .++++||+++|+|.+++......+++..+..++.++++||+|||..
T Consensus 62 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---- 136 (327)
T 3poz_A 62 KEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---- 136 (327)
T ss_dssp HHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC----
Confidence 45678999999999999999999998654 6789999999999999987777799999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+| |
T Consensus 137 ~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g 216 (327)
T 3poz_A 137 RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216 (327)
T ss_dssp TCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcC
Confidence 79999999541 0111236779999999999899999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+....... .+..+...+.+++.+||+.||.+||+|.|+++.|+++.
T Consensus 217 ~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~ 277 (327)
T 3poz_A 217 SKPYDGIP--ASEISSILEKGERLP-----------------QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 277 (327)
T ss_dssp CCTTTTCC--GGGHHHHHHTTCCCC-----------------CCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHH
T ss_pred CCCccCCC--HHHHHHHHHcCCCCC-----------------CCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 99997632 222333333221110 01123346789999999999999999999999999876
Q ss_pred H
Q 040540 659 V 659 (669)
Q Consensus 659 ~ 659 (669)
.
T Consensus 278 ~ 278 (327)
T 3poz_A 278 R 278 (327)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-26 Score=235.03 Aligned_cols=236 Identities=20% Similarity=0.211 Sum_probs=201.2
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+.+..|..|..+++|++|+|++|.+.+..| +..+++|++|++++|++.+.. ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence 478999999999998888889999999999999999987665 899999999999999998432 3489999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCcccc-CCCCCCEEEccCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG-SLQNLKNLDLADNKLSG 209 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~N~l~~ 209 (669)
++|++++..+.. +++|+.|++++|.+++..+..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 999999765543 67899999999999998888999999999999999999988777764 78999999999999987
Q ss_pred CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCcc-ccCcccc
Q 040540 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS-GHIPNTF 288 (669)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~-~~~p~~~ 288 (669)
. | ....+++|++|++++|.++ .+|..+. .+++|++|++++|++. .+|..+..+++|+.|++++|.+. +.+|..+
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 184 V-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred c-c-cccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 6 3 3345889999999999997 4565555 6889999999999887 46777888889999999999887 6677777
Q ss_pred CCCCCCCEEEccC
Q 040540 289 GNLRHLSVLNVMM 301 (669)
Q Consensus 289 ~~l~~L~~L~l~~ 301 (669)
..+++|+.+++..
T Consensus 259 ~~~~~L~~l~l~~ 271 (317)
T 3o53_A 259 SKNQRVQTVAKQT 271 (317)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hccccceEEECCC
Confidence 7788888777763
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=244.05 Aligned_cols=235 Identities=26% Similarity=0.303 Sum_probs=156.3
Q ss_pred CCCCCCCCCcccee------eCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEE
Q 040540 32 WSISYPICSWAGIS------CGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMS 105 (669)
Q Consensus 32 w~~~~~~c~~~g~~------c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 105 (669)
|....++|.|.|.. |.+....++.|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+
T Consensus 15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~ 87 (622)
T 3g06_A 15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLE 87 (622)
T ss_dssp HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEE
Confidence 87777889986532 2112245889999999998 6676665 79999999999998 4555 578999999
Q ss_pred ccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc
Q 040540 106 LAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG 185 (669)
Q Consensus 106 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~ 185 (669)
|++|+++ .+|. .+++|++|+|++|++++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++
T Consensus 88 Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 88 VSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp ECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred cCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC
Confidence 9999988 4665 67899999999999885 444 56778888888887764 4443 3677777777777764
Q ss_pred cCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCcccc
Q 040540 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSIT 265 (669)
Q Consensus 186 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 265 (669)
+|. .+.+|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+.. +|..
T Consensus 156 -l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~-l~~~-- 219 (622)
T 3g06_A 156 -LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPAL-- 219 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-CCCC--
T ss_pred -cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccc-cCCC--
Confidence 343 23567777777777775 34 345667777777776653 443 23566666666666553 3321
Q ss_pred CCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 266 NATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 266 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
+++|+.|++++|.+++ +| ..+++|+.|++++|+++.
T Consensus 220 -~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 220 -PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp -CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred -CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc
Confidence 2456666666665553 33 233455555555555543
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=247.72 Aligned_cols=192 Identities=26% Similarity=0.366 Sum_probs=152.4
Q ss_pred cccCchhhhhhccccccccceecccccccc-ccceeeccCCCCChHHhhhcCCC-ccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+.+..|+.++.+++|||+++++++|.... ..++|||||++|+|.++++..+. .+++..+..++.|+++|++|||.
T Consensus 230 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~-- 307 (450)
T 1k9a_A 230 AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG-- 307 (450)
T ss_dssp SHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh--
Confidence 346778999999999999999999986654 67999999999999999986433 47899999999999999999995
Q ss_pred CCCCeeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCC
Q 040540 524 SSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKR 580 (669)
Q Consensus 524 ~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~ 580 (669)
.+++|||+|+.. ......++..|+|||++.+..++.++|||||||++|||+| |+.
T Consensus 308 --~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~ 385 (450)
T 1k9a_A 308 --NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRV 385 (450)
T ss_dssp --TTEECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred --CCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 479999999541 0111246789999999998899999999999999999999 999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
||...... .+...+...... +.+..++..+.+++.+||..||++|||+.++++.|+++...
T Consensus 386 P~~~~~~~--~~~~~i~~~~~~-----------------~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 386 PYPRIPLK--DVVPRVEKGYKM-----------------DAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp SSTTSCTT--THHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHH--HHHHHHHcCCCC-----------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 99764322 233333222111 11223445678999999999999999999999999998765
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-27 Score=243.80 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=150.5
Q ss_pred chhhhhhccccccccceeccccccc----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNP----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..|+..+..++|+|++++++++... ...++||||+ +++|.+++......+++..+..|+.|+++||+|||..
T Consensus 96 ~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~--- 171 (364)
T 3op5_A 96 IQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEH--- 171 (364)
T ss_dssp HHHHHHHTTCSCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHhhccCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 3455667788999999999998764 4578999999 9999999987667799999999999999999999954
Q ss_pred CCeeecCCCCccc----------------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 526 APIIHCEGEDSVT----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 526 ~~i~h~d~~~~~~----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
+|+|||+|+... .....||+.|+|||++.+..++.++|||||||+
T Consensus 172 -~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~ 250 (364)
T 3op5_A 172 -EYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYC 250 (364)
T ss_dssp -TEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred -CeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHH
Confidence 899999985310 011238999999999998889999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
+|||+||+.||....... ....+........+...+++.+. ....+..+.+++.+||+.||.+||++.+++
T Consensus 251 l~el~~g~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~li~~cl~~~p~~RP~~~~l~ 321 (364)
T 3op5_A 251 MIQWLTGHLPWEDNLKDP-KYVRDSKIRYRENIASLMDKCFP--------AANAPGEIAKYMETVKLLDYTEKPLYENLR 321 (364)
T ss_dssp HHHHHHSCCTTGGGTTCH-HHHHHHHHHHHHCHHHHHHHHSC--------TTCCCHHHHHHHHHHHTCCTTCCCCHHHHH
T ss_pred HHHHHhCCCCccccccCH-HHHHHHHHHhhhhHHHHHHHhcc--------cccCHHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence 999999999997633222 22222222211111112111110 012345688999999999999999999999
Q ss_pred HHHHHhHHHh
Q 040540 652 AKLKKIKVKF 661 (669)
Q Consensus 652 ~~l~~~~~~~ 661 (669)
+.|+++....
T Consensus 322 ~~l~~~~~~~ 331 (364)
T 3op5_A 322 DILLQGLKAI 331 (364)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999987654
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=241.32 Aligned_cols=194 Identities=18% Similarity=0.338 Sum_probs=151.4
Q ss_pred ccCchhhhhhccccccccceecccccc-ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..++|||+++++++|.. .+..++||||+++|+|.++++.....+++.+...++.|+++|++|||..
T Consensus 135 ~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~--- 211 (373)
T 3c1x_A 135 SQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK--- 211 (373)
T ss_dssp HHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 457789999999999999999998754 4577899999999999999987666789999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 526 APIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+
T Consensus 212 -~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ell 290 (373)
T 3c1x_A 212 -KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 290 (373)
T ss_dssp -TCCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred -CEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 79999999531 001123677899999998888999999999999999999
Q ss_pred h-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 T-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
| |..||.... ...+...+....... . +..++..+.+++.+||+.||++||++.|+++.|+
T Consensus 291 t~~~~p~~~~~--~~~~~~~~~~~~~~~-----~------------p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~ 351 (373)
T 3c1x_A 291 TRGAPPYPDVN--TFDITVYLLQGRRLL-----Q------------PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 351 (373)
T ss_dssp TTSCCSCTTSC--SSCHHHHHHTTCCCC-----C------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred hCcCCCCCCCC--HHHHHHHHHcCCCCC-----C------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 9 677776532 222333332221110 0 1122345789999999999999999999999999
Q ss_pred HhHHHhhh
Q 040540 656 KIKVKFLD 663 (669)
Q Consensus 656 ~~~~~~~~ 663 (669)
++...+.+
T Consensus 352 ~i~~~~~~ 359 (373)
T 3c1x_A 352 AIFSTFIG 359 (373)
T ss_dssp HHHHTCCS
T ss_pred HHHHhccc
Confidence 99877544
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=240.61 Aligned_cols=196 Identities=22% Similarity=0.353 Sum_probs=151.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-----------------------CccCHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-----------------------YFLDIL 503 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~l~~~ 503 (669)
+.+..|+..+..++|||++++++++......++||||+++|+|.+++.... ..+++.
T Consensus 95 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (343)
T 1luf_A 95 ADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCA 174 (343)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHH
Confidence 456789999999999999999999999999999999999999999997632 468899
Q ss_pred HHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccC
Q 040540 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 504 ~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
++..|+.++++||+|||.. +++|+|+|+.. ......||+.|+|||++.+
T Consensus 175 ~~~~i~~qi~~~l~~LH~~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~ 250 (343)
T 1luf_A 175 EQLCIARQVAAGMAYLSER----KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFY 250 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC----CeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhcc
Confidence 9999999999999999954 79999999541 0112247888999999988
Q ss_pred CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..++.++|||||||++|||+| |+.||.... ...+...+....... .+..++..+.+++.+
T Consensus 251 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~ 311 (343)
T 1luf_A 251 NRYTTESDVWAYGVVLWEIFSYGLQPYYGMA--HEEVIYYVRDGNILA-----------------CPENCPLELYNLMRL 311 (343)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--HHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHH
T ss_pred CCcCcccccHHHHHHHHHHHhcCCCcCCCCC--hHHHHHHHhCCCcCC-----------------CCCCCCHHHHHHHHH
Confidence 889999999999999999999 999987532 111222222111100 011233467899999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHHhhhhh
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVKFLDDV 665 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~~~~~~ 665 (669)
||+.||++||++.+|++.|+++.++....+
T Consensus 312 ~l~~~p~~Rps~~~~~~~L~~~~~~~~~~~ 341 (343)
T 1luf_A 312 CWSKLPADRPSFCSIHRILQRMCERAEGTV 341 (343)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHTTC------
T ss_pred HcccCcccCCCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999999987765443
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-26 Score=230.83 Aligned_cols=191 Identities=25% Similarity=0.454 Sum_probs=147.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++.... ++||||+++|+|.+++.+....+++..+..++.++++|++|||.. .+
T Consensus 68 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~--~~ 143 (287)
T 4f0f_A 68 QEFQREVFIMSNLNHPNIVKLYGLMHNPP--RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ--NP 143 (287)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEETTTT--EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS--SS
T ss_pred HHHHHHHHHHHhCCCCCchhhheeecCCC--eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 45678999999999999999999886554 699999999999999987777899999999999999999999954 23
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCcccccc--CCCcCccccchhhHHHHHHHHh
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGS--EGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~s~Gvil~el~t 577 (669)
+++|+|+|+... .....||+.|+|||++. ...++.++||||+||++|||++
T Consensus 144 ~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~ 223 (287)
T 4f0f_A 144 PIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILT 223 (287)
T ss_dssp CCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHH
T ss_pred CeecCCCCcceEEEeccCCCCceeEEeCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHc
Confidence 499999985310 11234899999999984 4558899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.................... +.+ +...+..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 224 g~~pf~~~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 224 GEGPFDEYSYGKIKFINMIREEGLR-------PTI---------PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp SSCTTTTCCCCHHHHHHHHHHSCCC-------CCC---------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred CCCCCccccccHHHHHHHHhccCCC-------CCC---------CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 9999976433332222222221100 001 112345678999999999999999999999999864
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=242.02 Aligned_cols=190 Identities=22% Similarity=0.361 Sum_probs=151.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC------CccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN------YFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~------~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.++++..+ ..+++.++..++.++++||+|||.
T Consensus 120 ~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~ 199 (367)
T 3l9p_A 120 DFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE 199 (367)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 46678999999999999999999998888999999999999999997532 358899999999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------------cccccccccccCccccccCCCcCccccchhhHHH
Q 040540 522 GHSSAPIIHCEGEDSV------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
. +|+|||+|+.. ......||+.|+|||++.+..++.++|||||||+
T Consensus 200 ~----~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~i 275 (367)
T 3l9p_A 200 N----HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 275 (367)
T ss_dssp T----TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred C----CeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHH
Confidence 4 79999999531 0111246889999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+|||+| |+.||.... ...+...+........ +..++..+.+++.+||+.||.+||++.+|
T Consensus 276 l~ellt~g~~pf~~~~--~~~~~~~i~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dP~~Rps~~ei 336 (367)
T 3l9p_A 276 LWEIFSLGYMPYPSKS--NQEVLEFVTSGGRMDP-----------------PKNCPGPVYRIMTQCWQHQPEDRPNFAII 336 (367)
T ss_dssp HHHHHTTSCCSSTTCC--HHHHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHhCCCCCCCCCC--HHHHHHHHHcCCCCCC-----------------CccCCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 999998 999986532 2222332222211100 11223457899999999999999999999
Q ss_pred HHHHHHhHHH
Q 040540 651 AAKLKKIKVK 660 (669)
Q Consensus 651 ~~~l~~~~~~ 660 (669)
++.|+.+.+.
T Consensus 337 l~~l~~~~~~ 346 (367)
T 3l9p_A 337 LERIEYCTQD 346 (367)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 9999988654
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=256.02 Aligned_cols=196 Identities=17% Similarity=0.329 Sum_probs=155.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||+++++++|.. +..++|||||++|+|.+++......+++..+..|+.++++||+|||..
T Consensus 381 ~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---- 455 (613)
T 2ozo_A 381 EEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---- 455 (613)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 457789999999999999999999876 557899999999999999987667799999999999999999999954
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+... .....+|+.|+|||++....++.++|||||||++|||+|
T Consensus 456 ~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~ 535 (613)
T 2ozo_A 456 NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSY 535 (613)
T ss_dssp TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHC
Confidence 799999995310 001124578999999988889999999999999999998
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+...... +.+..++..+.+++.+||..||++||+|.+|++.|+.+
T Consensus 536 G~~Pf~~~~~--~~~~~~i~~~~~~-----------------~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 596 (613)
T 2ozo_A 536 GQKPYKKMKG--PEVMAFIEQGKRM-----------------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596 (613)
T ss_dssp SCCTTTTCCS--HHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCH--HHHHHHHHcCCCC-----------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 9999976432 2233333322111 11223445688999999999999999999999999998
Q ss_pred HHHhhhhhh
Q 040540 658 KVKFLDDVA 666 (669)
Q Consensus 658 ~~~~~~~~~ 666 (669)
......+.+
T Consensus 597 ~~~~~~~~~ 605 (613)
T 2ozo_A 597 YYSLASKVE 605 (613)
T ss_dssp HHHHSCSCC
T ss_pred HHHhccccC
Confidence 777655443
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=230.28 Aligned_cols=191 Identities=24% Similarity=0.321 Sum_probs=150.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++...+..+++..+..++.++++|++|||..
T Consensus 48 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---- 123 (268)
T 3sxs_A 48 DEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH---- 123 (268)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3467899999999999999999999988889999999999999999987666789999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+|+.. ......||+.|+|||...+..++.++||||+|+++|||+| |+
T Consensus 124 ~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~ 203 (268)
T 3sxs_A 124 QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGK 203 (268)
T ss_dssp TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTC
T ss_pred CeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCC
Confidence 79999999541 0111235667999999988889999999999999999999 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||..... ......+...... .. +...+..+.+++.+||+.||++|||+.|+++.|+.+++
T Consensus 204 ~p~~~~~~--~~~~~~~~~~~~~-----~~------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 204 MPYDLYTN--SEVVLKVSQGHRL-----YR------------PHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp CTTTTSCH--HHHHHHHHTTCCC-----CC------------CTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred CCccccCh--HHHHHHHHcCCCC-----CC------------CCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 99865321 1111111111110 00 11123457899999999999999999999999999876
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
+
T Consensus 265 ~ 265 (268)
T 3sxs_A 265 K 265 (268)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-27 Score=236.12 Aligned_cols=182 Identities=20% Similarity=0.241 Sum_probs=143.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|||++++++++...+..++||||+++|+|.+++.+. .+++.....++.++++|++|||.. +
T Consensus 63 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~----~ 136 (297)
T 3fxz_A 63 LIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSN----Q 136 (297)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhC----C
Confidence 4567899999999999999999999888899999999999999999763 488999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 137 i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf 216 (297)
T 3fxz_A 137 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPY 216 (297)
T ss_dssp EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred ceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999531 112235899999999999989999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
....... .+........+. . ..+......+.+++.+||+.||++|||+.|+++
T Consensus 217 ~~~~~~~-~~~~~~~~~~~~-~---------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 217 LNENPLR-ALYLIATNGTPE-L---------------QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp TTSCHHH-HHHHHHHHCSCC-C---------------SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCHHH-HHHHHHhCCCCC-C---------------CCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 6532111 111111111110 0 012233456789999999999999999999976
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=235.72 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=146.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.+++......+++.+...++.++++|++|||. .+
T Consensus 47 ~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~----~g 122 (321)
T 1tki_A 47 LVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHS----HN 122 (321)
T ss_dssp HHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45679999999999999999999998899999999999999999998766679999999999999999999995 48
Q ss_pred eeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|||+|+... .....||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 123 ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~p 202 (321)
T 1tki_A 123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINP 202 (321)
T ss_dssp EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCT
T ss_pred CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 99999985310 1122489999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... ...+...+...... . . ...+...+..+.+++.+|+..||.+|||+.|+++
T Consensus 203 f~~~~--~~~~~~~i~~~~~~-~--------~-----~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 203 FLAET--NQQIIENIMNAEYT-F--------D-----EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp TCCSS--HHHHHHHHHHTCCC-C--------C-----HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CcCCC--HHHHHHHHHcCCCC-C--------C-----hhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 97532 11121111111100 0 0 0012234556889999999999999999999987
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=230.39 Aligned_cols=191 Identities=20% Similarity=0.310 Sum_probs=149.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++. .+..++||||+++|+|.+++......+++..+..++.++++|++|||..
T Consensus 61 ~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---- 135 (281)
T 1mp8_A 61 EKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---- 135 (281)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCccceEEEEEc-cCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 35667899999999999999999874 4567899999999999999987666799999999999999999999954
Q ss_pred CeeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+|+... .....+|+.|+|||++....++.++|||||||++|||++ |+
T Consensus 136 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~ 215 (281)
T 1mp8_A 136 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 215 (281)
T ss_dssp TCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSC
T ss_pred CeecccccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCC
Confidence 799999995410 111235678999999988889999999999999999997 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||..... ..+...+....... .+...+..+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 216 ~pf~~~~~--~~~~~~i~~~~~~~-----------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 276 (281)
T 1mp8_A 216 KPFQGVKN--NDVIGRIENGERLP-----------------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 276 (281)
T ss_dssp CTTTTCCG--GGHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCcCCH--HHHHHHHHcCCCCC-----------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 99876322 22333222211110 011234567899999999999999999999999999876
Q ss_pred Hh
Q 040540 660 KF 661 (669)
Q Consensus 660 ~~ 661 (669)
..
T Consensus 277 ~~ 278 (281)
T 1mp8_A 277 EE 278 (281)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=219.15 Aligned_cols=221 Identities=22% Similarity=0.186 Sum_probs=149.3
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
.+.++.++. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++.+..+..|.++++|++|+|++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 334444443 3444432 4688888888888877777888888888888888888877777888888888888888888
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCccc-CCccccCCCCCCEEEccCCCCCCCCCcc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ-IPTEIGSLQNLKNLDLADNKLSGLIPPT 214 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 214 (669)
++..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+. +|..++.+++|++|++++|.+++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 877777788888888888888877776666677777777777777777653 5777777777777777777777666666
Q ss_pred ccCCCCCc----EEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCcc
Q 040540 215 IFNISTMR----ILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS 281 (669)
Q Consensus 215 ~~~l~~L~----~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 281 (669)
+..+.+|+ .|++++|.+++ ++...+ ...+|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNF-IQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCE-ECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhhhhccccceeeecCCCcccc-cCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 55555554 56666666552 333322 1234555555555555444444444555555555555444
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=249.61 Aligned_cols=190 Identities=22% Similarity=0.336 Sum_probs=152.5
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+.|..|+.++..++|||+++++++|......++|||||++|+|.++++.. ...+++..+..|+.|+++||+|||.
T Consensus 260 ~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~--- 336 (495)
T 1opk_A 260 VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK--- 336 (495)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 345778999999999999999999999988999999999999999999863 3468999999999999999999995
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
.+|+|||+|+.. ......++..|+|||++....++.++|||||||++|||+|
T Consensus 337 -~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~ 415 (495)
T 1opk_A 337 -KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATY 415 (495)
T ss_dssp -TTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTT
T ss_pred -CCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhC
Confidence 479999999531 0011235678999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+.+.+...... +.+..++..+.+++.+||+.||++||||.+|++.|+.+
T Consensus 416 g~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 416 GMSPYPGID--LSQVYELLEKDYRM-----------------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp SCCSSTTCC--GGGHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCCC--HHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 999987643 22233333322111 11223345678999999999999999999999999987
Q ss_pred H
Q 040540 658 K 658 (669)
Q Consensus 658 ~ 658 (669)
.
T Consensus 477 ~ 477 (495)
T 1opk_A 477 F 477 (495)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=240.81 Aligned_cols=192 Identities=24% Similarity=0.397 Sum_probs=149.6
Q ss_pred ccCchhhhhhccc-cccccceecccccccc-ccceeeccCCCCChHHhhhcCCC--------------------------
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNY-------------------------- 498 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~-------------------------- 498 (669)
+.+..|+.++..+ +|||+++++++|.... ..++||||+++|+|.++++....
T Consensus 70 ~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
T 3vhe_A 70 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDL 149 (359)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------
T ss_pred HHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhh
Confidence 4567899999999 7899999999987754 47899999999999999975321
Q ss_pred ---------------------------------------ccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc--
Q 040540 499 ---------------------------------------FLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV-- 537 (669)
Q Consensus 499 ---------------------------------------~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~-- 537 (669)
.+++.....++.++++||+|||.. +|+|+|+|+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~----~ivH~Dikp~NIl 225 (359)
T 3vhe_A 150 KRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR----KCIHRDLAARNIL 225 (359)
T ss_dssp ----------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT----TCCCSCCSGGGEE
T ss_pred hccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC----CcccCCCChhhEE
Confidence 288889999999999999999954 79999999531
Q ss_pred -------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCcc
Q 040540 538 -------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMS 591 (669)
Q Consensus 538 -------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~ 591 (669)
......||+.|+|||++.+..++.++|||||||++|||+| |+.||....... .
T Consensus 226 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~ 304 (359)
T 3vhe_A 226 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-E 304 (359)
T ss_dssp ECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-H
T ss_pred EcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH-H
Confidence 0112347889999999988889999999999999999999 999997643222 2
Q ss_pred HHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 592 LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
+...+........ +......+.+++.+||+.||++||||.||++.|+++.+.
T Consensus 305 ~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 305 FCRRLKEGTRMRA-----------------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp HHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCC-----------------CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 2222222211111 112234578999999999999999999999999998765
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-26 Score=232.45 Aligned_cols=191 Identities=18% Similarity=0.295 Sum_probs=149.3
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.+..|+..+..++|+|+++++++|. ....++||||+++|+|.+++...+..+++..+..++.++++||+|||..
T Consensus 59 ~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~--- 134 (325)
T 3kex_A 59 FQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH--- 134 (325)
T ss_dssp BCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 346778899999999999999999886 4567899999999999999987666789999999999999999999954
Q ss_pred CCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 526 APIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 526 ~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+.. ......||..|+|||++.+..++.++|||||||++|||+|
T Consensus 135 -~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~ 213 (325)
T 3kex_A 135 -GMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTF 213 (325)
T ss_dssp -TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred -CCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhC
Confidence 79999999541 0112246779999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+......... ..+...+.+++.+||+.||.+||++.|+++.|+++
T Consensus 214 g~~p~~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~ 274 (325)
T 3kex_A 214 GAEPYAGLRL--AEVPDLLEKGERLAQP-----------------QICTIDVYMVMVKCWMIDENIRPTFKELANEFTRM 274 (325)
T ss_dssp SCCTTTTSCT--THHHHHHHTTCBCCCC-----------------TTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred CCCCccccCH--HHHHHHHHcCCCCCCC-----------------CcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 9999976332 2233333322111111 11122457899999999999999999999999987
Q ss_pred HHH
Q 040540 658 KVK 660 (669)
Q Consensus 658 ~~~ 660 (669)
...
T Consensus 275 ~~~ 277 (325)
T 3kex_A 275 ARD 277 (325)
T ss_dssp TTS
T ss_pred Hhc
Confidence 543
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-26 Score=229.04 Aligned_cols=191 Identities=19% Similarity=0.319 Sum_probs=152.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++......++||||+++|+|.+++......+++.++..++.++++|++|||..
T Consensus 64 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---- 139 (283)
T 3gen_A 64 DEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---- 139 (283)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3466899999999999999999999998899999999999999999987556789999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+|+.. ......||+.|+|||++.+..++.++||||+|+++|||+| |+
T Consensus 140 ~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~ 219 (283)
T 3gen_A 140 QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGK 219 (283)
T ss_dssp TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTC
T ss_pred CccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence 79999999541 0111235678999999988889999999999999999999 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... .......+........ +......+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 220 ~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 220 MPYERFT--NSETAEHIAQGLRLYR-----------------PHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp CTTTTSC--HHHHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCccccC--hhHHHHHHhcccCCCC-----------------CCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence 9987532 1112222222111100 11123457899999999999999999999999999876
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 281 ~ 281 (283)
T 3gen_A 281 E 281 (283)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-26 Score=236.05 Aligned_cols=196 Identities=20% Similarity=0.321 Sum_probs=151.0
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCC----------------------ccCHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY----------------------FLDIL 503 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~----------------------~l~~~ 503 (669)
+.+..|+.++..+ +|||++++++++...+..++||||+++|+|.+++..... .+++.
T Consensus 93 ~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (344)
T 1rjb_A 93 EALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFE 172 (344)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHH
Confidence 4567899999999 899999999999999999999999999999999986432 37889
Q ss_pred HHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccC
Q 040540 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 504 ~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
.+..++.++++||+|||. .+|+|+|+|+.. ......||+.|+|||++.+
T Consensus 173 ~~~~i~~qi~~aL~~LH~----~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~ 248 (344)
T 1rjb_A 173 DLLCFAYQVAKGMEFLEF----KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFE 248 (344)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----CCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhcc
Confidence 999999999999999995 489999999541 0112236778999999988
Q ss_pred CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..++.++|||||||++|||+| |+.||..... ...+...+........ +...+..+.+++.+
T Consensus 249 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~ 310 (344)
T 1rjb_A 249 GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV-DANFYKLIQNGFKMDQ-----------------PFYATEEIYIIMQS 310 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHcCCCCCcccCCc-HHHHHHHHhcCCCCCC-----------------CCCCCHHHHHHHHH
Confidence 889999999999999999998 9999976432 2223333332211110 11223467899999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHHhhhh
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVKFLDD 664 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~~~~~ 664 (669)
||..||.+|||+.|+++.|+.+.....++
T Consensus 311 ~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 339 (344)
T 1rjb_A 311 CWAFDSRKRPSFPNLTSFLGCQLADAEEA 339 (344)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred HcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987765443
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=233.33 Aligned_cols=191 Identities=26% Similarity=0.393 Sum_probs=152.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-----------------------CccCHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-----------------------YFLDIL 503 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~l~~~ 503 (669)
+.+..|+..+..++|||++++++++......++||||+++|+|.+++.... ..+++.
T Consensus 71 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (314)
T 2ivs_A 71 RDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMG 150 (314)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHH
T ss_pred HHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHH
Confidence 456779999999999999999999999999999999999999999997532 247889
Q ss_pred HHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccC
Q 040540 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 504 ~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
++..++.++++|++|||.. +++|+|+|+.. ......||+.|+|||...+
T Consensus 151 ~~~~i~~qi~~~l~~lH~~----~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~ 226 (314)
T 2ivs_A 151 DLISFAWQISQGMQYLAEM----KLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFD 226 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC----CCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcC
Confidence 9999999999999999954 79999999531 0111236788999999988
Q ss_pred CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..++.++|||||||++|||+| |+.||..... ..+...+........ +...+..+.+++.+
T Consensus 227 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li~~ 287 (314)
T 2ivs_A 227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP--ERLFNLLKTGHRMER-----------------PDNCSEEMYRLMLQ 287 (314)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHH
T ss_pred CCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHhhcCCcCCC-----------------CccCCHHHHHHHHH
Confidence 889999999999999999999 9999976322 223333332211110 11233567899999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
||+.||++||++.|+++.|+++..+
T Consensus 288 ~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 288 CWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HccCChhhCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999998654
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-26 Score=226.25 Aligned_cols=191 Identities=24% Similarity=0.346 Sum_probs=152.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++......+++..+..++.++++|+.|||..
T Consensus 48 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---- 123 (267)
T 3t9t_A 48 EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---- 123 (267)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 3567899999999999999999999988899999999999999999987666789999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+++.. ......||..|+|||+..+..++.++||||+|+++|||+| |+
T Consensus 124 ~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~ 203 (267)
T 3t9t_A 124 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGK 203 (267)
T ss_dssp TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CcccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCC
Confidence 79999999541 0111236678999999988889999999999999999999 89
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... .......+........ +......+.+++.+||+.||++||++.|+++.|+++.+
T Consensus 204 ~p~~~~~--~~~~~~~i~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 204 IPYENRS--NSEVVEDISTGFRLYK-----------------PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp CTTTTCC--HHHHHHHHHTTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHhcCCcCCC-----------------CccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 9986532 1112222222211100 11123457899999999999999999999999999876
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
+
T Consensus 265 ~ 265 (267)
T 3t9t_A 265 S 265 (267)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-26 Score=229.76 Aligned_cols=194 Identities=20% Similarity=0.298 Sum_probs=146.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++...+..++||||+++|+|.+++......+++..+..++.++++||+|||..
T Consensus 57 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---- 132 (289)
T 4fvq_A 57 ESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN---- 132 (289)
T ss_dssp HHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC----
Confidence 3567789999999999999999999998899999999999999999987666689999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------ccccccccccCccccccC-CCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSVT-----------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+... .....||+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 133 ~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~ 212 (289)
T 4fvq_A 133 TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEIC 212 (289)
T ss_dssp TCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CeECCCcCcceEEEecCCcccccccceeeeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHH
Confidence 799999995410 001137889999999887 66899999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
||..|+..... ........... ..... .....+.+++.+||+.||++|||+.|+++.|++
T Consensus 213 ~g~~~~~~~~~-~~~~~~~~~~~--~~~~~-----------------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~ 272 (289)
T 4fvq_A 213 SGGDKPLSALD-SQRKLQFYEDR--HQLPA-----------------PKAAELANLINNCMDYEPDHRPSFRAIIRDLNS 272 (289)
T ss_dssp TTTCCTTTTSC-HHHHHHHHHTT--CCCCC-----------------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHT
T ss_pred cCCCCCccccc-hHHHHHHhhcc--CCCCC-----------------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence 96555432111 11111111111 11110 011235789999999999999999999999999
Q ss_pred hHHHhhhh
Q 040540 657 IKVKFLDD 664 (669)
Q Consensus 657 ~~~~~~~~ 664 (669)
+.......
T Consensus 273 l~~p~~~~ 280 (289)
T 4fvq_A 273 LFTPDLVP 280 (289)
T ss_dssp CC------
T ss_pred hcCCCCCC
Confidence 87654433
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=238.62 Aligned_cols=192 Identities=23% Similarity=0.377 Sum_probs=153.2
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+.++..+ +|||+++++++|...+..++||||+++|+|.+++.... ..+++.++..|+.
T Consensus 119 ~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 198 (382)
T 3tt0_A 119 SDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAY 198 (382)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHH
Confidence 4566899999999 89999999999999999999999999999999997643 3589999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
++++||+|||.. +|+|||+|+.. ......||+.|+|||++.+..++.++
T Consensus 199 qi~~aL~~LH~~----~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~ 274 (382)
T 3tt0_A 199 QVARGMEYLASK----KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQS 274 (382)
T ss_dssp HHHHHHHHHHHT----TCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHhC----CEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchh
Confidence 999999999954 79999999531 01112367889999999988899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||+| |+.||.... ...+...+........ +..+...+.+++.+||+.||+
T Consensus 275 DiwslG~il~ellt~g~~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dP~ 335 (382)
T 3tt0_A 275 DVWSFGVLLWEIFTLGGSPYPGVP--VEELFKLLKEGHRMDK-----------------PSNCTNELYMMMRDCWHAVPS 335 (382)
T ss_dssp HHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHHHHTTCCCCC-----------------CSSCCHHHHHHHHHHTCSSGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCCCCC-----------------CccCCHHHHHHHHHHcCCChh
Confidence 99999999999999 999986532 2222333322211110 112234678999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHh
Q 040540 643 KRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~~ 661 (669)
+|||+.||++.|+++....
T Consensus 336 ~Rps~~ell~~L~~~~~~~ 354 (382)
T 3tt0_A 336 QRPTFKQLVEDLDRIVALT 354 (382)
T ss_dssp GSCCHHHHHHHHHHHHHHS
T ss_pred hCcCHHHHHHHHHHHHHHH
Confidence 9999999999999998664
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=228.71 Aligned_cols=195 Identities=23% Similarity=0.310 Sum_probs=143.8
Q ss_pred ccccccccceeccccccc----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC----CCCCe
Q 040540 457 RNVRHRNLIKIISSCSNP----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH----SSAPI 528 (669)
Q Consensus 457 ~~l~h~niv~l~~~~~~~----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~----~~~~i 528 (669)
..++|+|++++++++... ...++||||+++|+|.++++.. .+++..+..++.++++|++|||... ..+++
T Consensus 86 ~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~i 163 (337)
T 3mdy_A 86 VLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAI 163 (337)
T ss_dssp TTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCE
T ss_pred HhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCE
Confidence 335899999999988765 6678999999999999999753 5899999999999999999999531 12389
Q ss_pred eecCCCCcc-----------------------------cccccccccccCccccccCCCcCcc------ccchhhHHHHH
Q 040540 529 IHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAK------CDVYSYGVLLM 573 (669)
Q Consensus 529 ~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~s~Gvil~ 573 (669)
+|||+|+.. ......||+.|+|||++.+..++.+ +|||||||++|
T Consensus 164 vH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~ 243 (337)
T 3mdy_A 164 AHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILW 243 (337)
T ss_dssp ECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHH
T ss_pred EecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHH
Confidence 999999531 0012358999999999877665554 99999999999
Q ss_pred HHHhC----------CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 574 ETFTR----------KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 574 el~tg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||+|| +.||....................... +.... .....+++..+.+++.+||+.||++
T Consensus 244 el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~l~~li~~~l~~dP~~ 315 (337)
T 3mdy_A 244 EVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLR----PSFPN----RWSSDECLRQMGKLMTECWAHNPAS 315 (337)
T ss_dssp HHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC----CCCCG----GGGGSHHHHHHHHHHHHHSCSSGGG
T ss_pred HHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccC----ccccc----cchhhHHHHHHHHHHHHhhhhChhh
Confidence 99999 666655433333332222221111111 11111 1113467788999999999999999
Q ss_pred CCCHHHHHHHHHHhHHHh
Q 040540 644 RMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~~ 661 (669)
|||+.||++.|+++.+..
T Consensus 316 Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 316 RLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp SCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999987753
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=242.95 Aligned_cols=149 Identities=22% Similarity=0.198 Sum_probs=79.4
Q ss_pred CCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeee
Q 040540 74 LSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLR 153 (669)
Q Consensus 74 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 153 (669)
+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+.+..| ++.+++|++|+|++|.+++..+ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3466667777666666666666666666666666666665443 6666666666666666653221 24555555
Q ss_pred cccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCcccc-CCCCCcEEEcccCCCc
Q 040540 154 AEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLS 232 (669)
Q Consensus 154 l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~l~~n~l~ 232 (669)
+++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 555555443332 224444455555554444444444444444444444444444444433 3444444444444443
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-26 Score=232.07 Aligned_cols=196 Identities=20% Similarity=0.307 Sum_probs=154.4
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCC-----------------ccCHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY-----------------FLDILERLNI 508 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~-----------------~l~~~~~~~i 508 (669)
+.+..|+..+..+ +|||++++++++...+..++||||+++|+|.+++..... .+++..+..+
T Consensus 71 ~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (313)
T 1t46_A 71 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSF 150 (313)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHH
Confidence 4567899999999 999999999999999999999999999999999976432 4889999999
Q ss_pred HHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCc
Q 040540 509 MIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSA 561 (669)
Q Consensus 509 ~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~ 561 (669)
+.++++|++|||.. +++|+|+|+.. ......||+.|+|||++.+..++.
T Consensus 151 ~~qi~~~l~~lH~~----~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~ 226 (313)
T 1t46_A 151 SYQVAKGMAFLASK----NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTF 226 (313)
T ss_dssp HHHHHHHHHHHHHT----TCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHC----CeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCCh
Confidence 99999999999954 79999999531 011223677899999998888999
Q ss_pred cccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCC
Q 040540 562 KCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 562 ~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~ 640 (669)
++|||||||++|||+| |+.||...... ..+...+........ +...+..+.+++.+||+.|
T Consensus 227 ~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~d 288 (313)
T 1t46_A 227 ESDVWSYGIFLWELFSLGSSPYPGMPVD-SKFYKMIKEGFRMLS-----------------PEHAPAEMYDIMKTCWDAD 288 (313)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSSTTCCSS-HHHHHHHHHTCCCCC-----------------CTTSCHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccch-hHHHHHhccCCCCCC-----------------cccCCHHHHHHHHHHcCCC
Confidence 9999999999999999 99998764322 222233332221110 1122345789999999999
Q ss_pred CCCCCCHHHHHHHHHHhHHHhhhh
Q 040540 641 PDKRMHMTDAAAKLKKIKVKFLDD 664 (669)
Q Consensus 641 P~~Rps~~~v~~~l~~~~~~~~~~ 664 (669)
|.+|||+.|+++.|+++.....++
T Consensus 289 p~~Rps~~ell~~L~~~~~~~~~~ 312 (313)
T 1t46_A 289 PLKRPTFKQIVQLIEKQISESTNH 312 (313)
T ss_dssp GGGSCCHHHHHHHHHHHHHHTCC-
T ss_pred chhCcCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999988765443
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-26 Score=246.47 Aligned_cols=191 Identities=20% Similarity=0.353 Sum_probs=150.2
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+.+..|+.++..++|||++++++++. ....++|||||++|+|.++++... ..+++..+..++.++++||+|||..
T Consensus 227 ~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-- 303 (454)
T 1qcf_A 227 VEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-- 303 (454)
T ss_dssp HHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 356778999999999999999999886 566789999999999999998532 3578889999999999999999954
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|||+|+.. ......+|..|+|||++....++.++|||||||++|||+|
T Consensus 304 --~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~ 381 (454)
T 1qcf_A 304 --NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTY 381 (454)
T ss_dssp --TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred --CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhC
Confidence 79999999531 0111235678999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+...... +.+..++..+.+++.+||..||++||||.+|++.|+++
T Consensus 382 g~~P~~~~~--~~~~~~~i~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~ 442 (454)
T 1qcf_A 382 GRIPYPGMS--NPEVIRALERGYRM-----------------PRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF 442 (454)
T ss_dssp SCCSSTTCC--HHHHHHHHHHTCCC-----------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCCC--HHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence 999997532 12222223222111 11223345678999999999999999999999999987
Q ss_pred HHH
Q 040540 658 KVK 660 (669)
Q Consensus 658 ~~~ 660 (669)
...
T Consensus 443 ~~~ 445 (454)
T 1qcf_A 443 YTA 445 (454)
T ss_dssp SSS
T ss_pred Hhc
Confidence 543
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-26 Score=231.46 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=145.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++......++||||+++|+|.+++.. ..+++..+..++.++++|++|||. .+
T Consensus 88 ~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~--~~l~~~~~~~i~~qi~~~L~~LH~----~~ 161 (321)
T 2c30_A 88 LLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ--VRLNEEQIATVCEAVLQALAYLHA----QG 161 (321)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 466799999999999999999999988889999999999999999874 458999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 162 ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf 241 (321)
T 2c30_A 162 VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPY 241 (321)
T ss_dssp EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred eecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 9999998531 112235899999999999888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... .......+....+.... ........+.+++.+||+.||++|||+.|+++
T Consensus 242 ~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 242 FSDS--PVQAMKRLRDSPPPKLK---------------NSHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp TTSC--HHHHHHHHHHSSCCCCT---------------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCC--HHHHHHHHhcCCCCCcC---------------ccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 6532 12222222222211110 01122345789999999999999999999986
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-26 Score=230.91 Aligned_cols=192 Identities=22% Similarity=0.358 Sum_probs=145.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++. ....++||||+++++|.+++......+++..+..++.++++||+|||..
T Consensus 65 ~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---- 139 (289)
T 3og7_A 65 QAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK---- 139 (289)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCcEEEEEeecc-CCccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45678999999999999999999654 4567899999999999999987667799999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||+.|+|||++. ...++.++|||||||++|||+
T Consensus 140 ~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~ 219 (289)
T 3og7_A 140 SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELM 219 (289)
T ss_dssp TCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHH
T ss_pred CcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHH
Confidence 79999999541 001124899999999886 566888999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhC-CCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESL-PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+|+.||..... ...+...+.... +...... ...++..+.+++.+||+.||++|||+.|++++|+
T Consensus 220 ~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~ 284 (289)
T 3og7_A 220 TGQLPYSNINN-RDQIIEMVGRGSLSPDLSKV--------------RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIE 284 (289)
T ss_dssp HSSCTTSSCCC-HHHHHHHHHHTSCCCCTTSS--------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HCCCCccccch-HHHHHHHhcccccCcchhhc--------------cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHH
Confidence 99999976322 222333332221 1111100 1123456789999999999999999999999999
Q ss_pred HhH
Q 040540 656 KIK 658 (669)
Q Consensus 656 ~~~ 658 (669)
++.
T Consensus 285 ~l~ 287 (289)
T 3og7_A 285 ELA 287 (289)
T ss_dssp HTT
T ss_pred HHh
Confidence 874
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-26 Score=234.93 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=145.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. ...+++.....++.+++.|++|||. .
T Consensus 60 ~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~----~ 134 (361)
T 2yab_A 60 EEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHT----K 134 (361)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTT-CSCCBHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3466899999999999999999999998999999999999999999975 3468999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||++|
T Consensus 135 givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g 214 (361)
T 2yab_A 135 KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214 (361)
T ss_dssp TEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred CcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhC
Confidence 79999998531 01223589999999999988899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||.... ...+...+...... . + .+.+...+..+.+++.+|+..||.+|||+.|+++
T Consensus 215 ~~Pf~~~~--~~~~~~~i~~~~~~-~----~---------~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 215 ASPFLGDT--KQETLANITAVSYD-F----D---------EEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp CCSSCCSS--HHHHHHHHHTTCCC-C----C---------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCCCCC--HHHHHHHHHhcCCC-C----C---------chhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 99996532 11111111111000 0 0 0112234456789999999999999999999985
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-26 Score=235.52 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=146.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++... ..+++.+...++.++++|++|||..
T Consensus 73 ~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH~~---- 147 (362)
T 2bdw_A 73 QKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCHSN---- 147 (362)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35667999999999999999999999999999999999999999999753 4689999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+
T Consensus 148 ~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~ 227 (362)
T 2bdw_A 148 GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGY 227 (362)
T ss_dssp TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred CeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCC
Confidence 79999998531 011235899999999999888999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+........ .+.+...+..+.+++.+||+.||++||++.|+++
T Consensus 228 ~Pf~~~~--~~~~~~~i~~~~~~~~--------------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 228 PPFWDED--QHRLYAQIKAGAYDYP--------------SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp CSSCCSS--HHHHHHHHHHTCCCCC--------------TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCCCCC--HHHHHHHHHhCCCCCC--------------cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 9986532 1122222222111100 0112233456789999999999999999999875
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-26 Score=227.67 Aligned_cols=194 Identities=16% Similarity=0.333 Sum_probs=153.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++ ..+..++||||+++++|.+++......+++..+..++.++++|+.|||..
T Consensus 55 ~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---- 129 (287)
T 1u59_A 55 EEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---- 129 (287)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4567899999999999999999998 44567899999999999999986666799999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++|||||||++|||+|
T Consensus 130 ~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~ 209 (287)
T 1u59_A 130 NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSY 209 (287)
T ss_dssp TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTT
T ss_pred CEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcC
Confidence 79999999531 0011235788999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+....... .+...+..+.+++.+||+.||++||++.|+++.|+++
T Consensus 210 g~~p~~~~~--~~~~~~~i~~~~~~~-----------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 210 GQKPYKKMK--GPEVMAFIEQGKRME-----------------CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp SCCTTTTCC--THHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcccCC--HHHHHHHHhcCCcCC-----------------CCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 999997632 222333332221110 0112345678999999999999999999999999999
Q ss_pred HHHhhhh
Q 040540 658 KVKFLDD 664 (669)
Q Consensus 658 ~~~~~~~ 664 (669)
.......
T Consensus 271 ~~~~~~~ 277 (287)
T 1u59_A 271 YYSLASK 277 (287)
T ss_dssp HHHHHTT
T ss_pred HHhcCCc
Confidence 7765443
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-26 Score=237.77 Aligned_cols=191 Identities=17% Similarity=0.210 Sum_probs=149.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++......+++..+..++.|+++||+|||..
T Consensus 131 ~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---- 206 (373)
T 2x4f_A 131 EEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQM---- 206 (373)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4567899999999999999999999998899999999999999999987666799999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|||+|+.. ......||+.|+|||++....++.++|||||||++|||+||+.
T Consensus 207 ~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~ 286 (373)
T 2x4f_A 207 YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLS 286 (373)
T ss_dssp TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCC
Confidence 79999998541 0112248999999999988889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH--HHHHh
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA--KLKKI 657 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~~ 657 (669)
||..... ...+.......... . . .........+.+++.+|++.||.+|||+.|+++ .+++.
T Consensus 287 pf~~~~~-~~~~~~i~~~~~~~--~----~---------~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~ 349 (373)
T 2x4f_A 287 PFLGDND-AETLNNILACRWDL--E----D---------EEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDH 349 (373)
T ss_dssp TTCCSSH-HHHHHHHHHTCCCS--C----S---------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred CCCCCCH-HHHHHHHHhccCCC--C----h---------hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence 9975321 11112222111100 0 0 001223456789999999999999999999987 44443
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-26 Score=236.75 Aligned_cols=185 Identities=21% Similarity=0.258 Sum_probs=146.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.+++......+++.....++.++++||+|||. .+
T Consensus 94 ~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~----~g 169 (387)
T 1kob_A 94 TVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE----HS 169 (387)
T ss_dssp HHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 46679999999999999999999999899999999999999999998766679999999999999999999995 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.|
T Consensus 170 ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~P 249 (387)
T 1kob_A 170 IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSP 249 (387)
T ss_dssp EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCS
T ss_pred eeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCC
Confidence 9999998531 01122589999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... .......+...... .++. .+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 250 f~~~~--~~~~~~~i~~~~~~-----~~~~---------~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 250 FAGED--DLETLQNVKRCDWE-----FDED---------AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp SCCSS--HHHHHHHHHHCCCC-----CCSS---------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCCCC--HHHHHHHHHhCCCC-----CCcc---------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 97532 11122222111100 0000 01123456789999999999999999999986
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-26 Score=232.69 Aligned_cols=190 Identities=22% Similarity=0.384 Sum_probs=151.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++|+|.+++......+++..+..++.++++||+|||.. +
T Consensus 92 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~----~ 167 (333)
T 1mqb_A 92 DFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM----N 167 (333)
T ss_dssp HHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC----C
Confidence 566799999999999999999999988899999999999999999987666799999999999999999999954 7
Q ss_pred eeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 528 IIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 528 i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
++|+|+|+... .....||+.|+|||++.+..++.++|||||||++|||+| |
T Consensus 168 ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g 247 (333)
T 1mqb_A 168 YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYG 247 (333)
T ss_dssp CCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred eeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCC
Confidence 99999985410 001124678999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+...... +.+...+..+.+++.+||+.||++||++.|+++.|+++.
T Consensus 248 ~~pf~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 308 (333)
T 1mqb_A 248 ERPYWELS--NHEVMKAINDGFRL-----------------PTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLI 308 (333)
T ss_dssp CCTTTTCC--HHHHHHHHHTTCCC-----------------CCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCcccCC--HHHHHHHHHCCCcC-----------------CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 99986532 11222222221110 001123346789999999999999999999999999987
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 309 ~~ 310 (333)
T 1mqb_A 309 RA 310 (333)
T ss_dssp HS
T ss_pred hc
Confidence 54
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=225.36 Aligned_cols=191 Identities=19% Similarity=0.268 Sum_probs=150.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++.. ...++||||+++++|.+++......+++.....++.++++|++|||. .
T Consensus 58 ~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~----~ 132 (281)
T 3cc6_A 58 EKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLES----I 132 (281)
T ss_dssp HHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 456779999999999999999998764 45689999999999999998766678999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||||+++|||+| |+
T Consensus 133 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~ 212 (281)
T 3cc6_A 133 NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGK 212 (281)
T ss_dssp TCCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CcccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCC
Confidence 79999999541 0111236778999999988889999999999999999999 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... .......+........ +...+..+.+++.+||..||++||++.|+++.|+++..
T Consensus 213 ~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 273 (281)
T 3cc6_A 213 QPFFWLE--NKDVIGVLEKGDRLPK-----------------PDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ 273 (281)
T ss_dssp CTTTTSC--GGGHHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCcccCC--hHHHHHHHhcCCCCCC-----------------CCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence 9997532 2223333322211100 11223457899999999999999999999999999876
Q ss_pred Hh
Q 040540 660 KF 661 (669)
Q Consensus 660 ~~ 661 (669)
..
T Consensus 274 ~~ 275 (281)
T 3cc6_A 274 ME 275 (281)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=227.18 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=153.3
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+..+..+ +|++++.+++++......++||||+ +++|.+++...+..+++..+..|+.|+++|++|||.
T Consensus 50 ~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---- 124 (298)
T 1csn_A 50 PQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE---- 124 (298)
T ss_dssp CCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 3566788888888 7999999999998888899999999 899999998766679999999999999999999994
Q ss_pred CCeeecCCCCcc-------------------------------------cccccccccccCccccccCCCcCccccchhh
Q 040540 526 APIIHCEGEDSV-------------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
.+++|+|+|+.. ......||+.|+|||++.+..++.++|||||
T Consensus 125 ~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl 204 (298)
T 1csn_A 125 KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEAL 204 (298)
T ss_dssp TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHH
T ss_pred CCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHH
Confidence 489999998430 0112248899999999998889999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCc-cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEM-SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||++|||++|+.||........ .....+...... ... .......+..+.+++.+||+.||++||++
T Consensus 205 G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~~~l~~li~~~l~~dp~~RP~~ 271 (298)
T 1csn_A 205 GHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS-------TPL------RELCAGFPEEFYKYMHYARNLAFDATPDY 271 (298)
T ss_dssp HHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH-------SCH------HHHTTTSCHHHHHHHHHHHHCCTTCCCCH
T ss_pred HHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC-------ccH------HHHHhhCcHHHHHHHHHHhcCCcccCCCH
Confidence 9999999999999976432211 111111110000 000 00011334578899999999999999999
Q ss_pred HHHHHHHHHhHHHhh
Q 040540 648 TDAAAKLKKIKVKFL 662 (669)
Q Consensus 648 ~~v~~~l~~~~~~~~ 662 (669)
.+|++.|+++.....
T Consensus 272 ~~l~~~l~~~~~~~~ 286 (298)
T 1csn_A 272 DYLQGLFSKVLERLN 286 (298)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999987653
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=229.75 Aligned_cols=204 Identities=19% Similarity=0.306 Sum_probs=151.9
Q ss_pred cCchhhhhhcc--ccccccceecccccccc----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRN--VRHRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|.+++.. ++|||++++++++.... ..++||||+++|+|.+++.+ ..+++.++..++.++++|++|||.
T Consensus 80 ~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~ 157 (342)
T 1b6c_B 80 SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHM 157 (342)
T ss_dssp HHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665 78999999999987765 67899999999999999975 358999999999999999999993
Q ss_pred CC----CCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC------CcCcc
Q 040540 522 GH----SSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG------IVSAK 562 (669)
Q Consensus 522 ~~----~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~------~~~~~ 562 (669)
.. ...+++|+|+|+.. ......||+.|+|||++.+. .++.+
T Consensus 158 ~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~ 237 (342)
T 1b6c_B 158 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKR 237 (342)
T ss_dssp CBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHH
T ss_pred HHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCc
Confidence 21 13589999998530 01223589999999998765 34478
Q ss_pred ccchhhHHHHHHHHhC----------CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHH
Q 040540 563 CDVYSYGVLLMETFTR----------KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDL 632 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 632 (669)
+|||||||++|||+|| +.||............+......... .+.+... ....++...+.++
T Consensus 238 ~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~l~~l 309 (342)
T 1b6c_B 238 ADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL----RPNIPNR----WQSCEALRVMAKI 309 (342)
T ss_dssp HHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CCCCCGG----GGTSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHh----CCCCccc----ccchhHHHHHHHH
Confidence 9999999999999999 67876544333334333333222111 1111110 0123567788999
Q ss_pred HhhcccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 633 ALDCCMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 633 ~~~c~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
+.+||+.||++|||+.||++.|+++.++.
T Consensus 310 i~~cl~~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 310 MRECWYANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp HHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred HHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-26 Score=234.29 Aligned_cols=181 Identities=19% Similarity=0.223 Sum_probs=143.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||++++++++......++||||+++|+|.+++... ..+++.....++.|+++|++|||. .
T Consensus 59 ~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH~----~ 133 (328)
T 3fe3_A 59 QKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAH-GRMKEKEARSKFRQIVSAVQYCHQ----K 133 (328)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 34567999999999999999999999989999999999999999999754 458999999999999999999995 4
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. ......||+.|+|||++.+..+ +.++||||+||++|||+||+.|
T Consensus 134 ~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~p 213 (328)
T 3fe3_A 134 RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 213 (328)
T ss_dssp TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCS
T ss_pred CEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCC
Confidence 79999999541 1123358999999999988775 4899999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... ...+...+...... . +...+..+.+++.+|++.||.+|||++|+++
T Consensus 214 f~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 214 FDGQN--LKELRERVLRGKYR-I-----------------PFYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp SCCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred CCCCC--HHHHHHHHHhCCCC-C-----------------CCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 97532 11122222111100 0 1112345789999999999999999999975
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=231.71 Aligned_cols=195 Identities=18% Similarity=0.308 Sum_probs=153.0
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcC-------------CCccCHHHHHHHHHhH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-------------NYFLDILERLNIMIDV 512 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-------------~~~l~~~~~~~i~~~i 512 (669)
+.+..|+.++..+ +|||++++++++......++||||+++|+|.+++... ...+++.....++.++
T Consensus 94 ~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi 173 (333)
T 2i1m_A 94 EALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQV 173 (333)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHH
Confidence 3567899999999 8999999999999999999999999999999999752 2357889999999999
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDV 565 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv 565 (669)
++||+|||.. +++|+|+|+.. ......||+.|+|||++.+..++.++||
T Consensus 174 ~~~l~~lH~~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di 249 (333)
T 2i1m_A 174 AQGMAFLASK----NCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDV 249 (333)
T ss_dssp HHHHHHHHHT----TEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHH
T ss_pred HHHHHHHhcC----CcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHH
Confidence 9999999954 89999999541 0111236778999999988889999999
Q ss_pred hhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 566 YSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 566 ~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|||||++|||+| |+.||...... ..+...+........ +...+..+.+++.+||+.||.+|
T Consensus 250 ~slG~il~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~R 311 (333)
T 2i1m_A 250 WSYGILLWEIFSLGLNPYPGILVN-SKFYKLVKDGYQMAQ-----------------PAFAPKNIYSIMQACWALEPTHR 311 (333)
T ss_dssp HHHHHHHHHHTTTSCCSSTTCCSS-HHHHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGS
T ss_pred HHHHHHHHHHHcCCCCCCcccchh-HHHHHHHhcCCCCCC-----------------CCCCCHHHHHHHHHHhccChhhC
Confidence 999999999999 89998763322 222333333221110 11123457899999999999999
Q ss_pred CCHHHHHHHHHHhHHHhhh
Q 040540 645 MHMTDAAAKLKKIKVKFLD 663 (669)
Q Consensus 645 ps~~~v~~~l~~~~~~~~~ 663 (669)
||+.||++.|+++.....+
T Consensus 312 ps~~~l~~~L~~~~~~~~~ 330 (333)
T 2i1m_A 312 PTFQQICSFLQEQAQEDRR 330 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhhc
Confidence 9999999999998776543
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-26 Score=231.92 Aligned_cols=184 Identities=17% Similarity=0.229 Sum_probs=145.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++......++||||+++|+|.+++.. ...+++..+..++.++++||+|||. .
T Consensus 50 ~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~LH~----~ 124 (323)
T 3tki_A 50 ENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHG----I 124 (323)
T ss_dssp -CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3566789999999999999999999999999999999999999999975 3458999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|+|+|+.. ......||+.|+|||++.+..+ +.++||||+||++|||+||
T Consensus 125 givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g 204 (323)
T 3tki_A 125 GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204 (323)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHS
T ss_pred CccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhC
Confidence 79999999531 0113358999999999887665 7899999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||............|....... +.+......+.+++.+|++.||++|||+.|+++
T Consensus 205 ~~pf~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 205 ELPWDQPSDSCQEYSDWKEKKTYL-----------------NPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp SCSCSSSCTTSHHHHHHHTTCTTS-----------------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCCchHHHHHHHHhcccccC-----------------CccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 999976443333333332211100 001223445679999999999999999999975
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-25 Score=225.34 Aligned_cols=195 Identities=20% Similarity=0.300 Sum_probs=153.2
Q ss_pred ccCchhhhhhccccccccceecccccccccc-ceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFK-ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~-~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+..++|||++++++++...+.. +++|||+.+|+|.+++......+++..+..++.++++|++|||..
T Consensus 67 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~--- 143 (298)
T 3pls_A 67 EAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQ--- 143 (298)
T ss_dssp HHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 4567899999999999999999998765554 899999999999999987667789999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 526 APIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||+.|+|||...+..++.++|||||||++|||+
T Consensus 144 -~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~ 222 (298)
T 3pls_A 144 -KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELL 222 (298)
T ss_dssp -TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred -CcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHh
Confidence 79999999531 011124688999999999888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
||..|+... .....+...+........ +...+..+.+++.+||+.||.+|||+.++++.|++
T Consensus 223 ~g~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~ 284 (298)
T 3pls_A 223 TRGAPPYRH-IDPFDLTHFLAQGRRLPQ-----------------PEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQ 284 (298)
T ss_dssp HTSCCTTTT-SCGGGHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred hCCCCCCcc-CCHHHHHHHhhcCCCCCC-----------------CccchHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence 966664432 222334433333221111 11223457899999999999999999999999999
Q ss_pred hHHHhhh
Q 040540 657 IKVKFLD 663 (669)
Q Consensus 657 ~~~~~~~ 663 (669)
+...+..
T Consensus 285 ~~~~l~~ 291 (298)
T 3pls_A 285 IVSALLG 291 (298)
T ss_dssp HHHHCCS
T ss_pred HHHHHhc
Confidence 9887643
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=226.54 Aligned_cols=193 Identities=19% Similarity=0.351 Sum_probs=149.3
Q ss_pred ccCchhhhhhccccccccceeccccc-cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+++++|||+++++++|. .....++||||+++|+|.++++.....+++..+..++.++++|++|||..
T Consensus 71 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~--- 147 (298)
T 3f66_A 71 SQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK--- 147 (298)
T ss_dssp HHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 45678999999999999999999864 45677899999999999999987667789999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 526 APIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||+.|+|||...+..++.++||||+|+++|||+
T Consensus 148 -~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~ 226 (298)
T 3f66_A 148 -KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 226 (298)
T ss_dssp -TCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred -CccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 79999999531 011223677899999998888999999999999999999
Q ss_pred hC-CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 TR-KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 tg-~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+| ..||.... ................ +...+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 227 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~ 287 (298)
T 3f66_A 227 TRGAPPYPDVN--TFDITVYLLQGRRLLQ-----------------PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 287 (298)
T ss_dssp TTSCCSSTTSC--TTTHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred hCCCCCCccCC--HHHHHHHHhcCCCCCC-----------------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 95 55554422 2222222222211100 1112345789999999999999999999999999
Q ss_pred HhHHHhh
Q 040540 656 KIKVKFL 662 (669)
Q Consensus 656 ~~~~~~~ 662 (669)
++...+.
T Consensus 288 ~~~~~~~ 294 (298)
T 3f66_A 288 AIFSTFI 294 (298)
T ss_dssp HHHHTSC
T ss_pred HHHHhhc
Confidence 9987654
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=231.14 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=145.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. ...+++..+..++.++++||.|||. .
T Consensus 59 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH~----~ 133 (326)
T 2y0a_A 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE-KESLTEEEATEFLKQILNGVYYLHS----L 133 (326)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTT-SSCCBHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3566899999999999999999999998899999999999999999975 3568999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|
T Consensus 134 ~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g 213 (326)
T 2y0a_A 134 QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213 (326)
T ss_dssp TEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHC
Confidence 79999998531 01123489999999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ......+...... ... ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus 214 ~~pf~~~~~--~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 214 ASPFLGDTK--QETLANVSAVNYE---------FED-----EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp CCSSCCSSH--HHHHHHHHHTCCC---------CCH-----HHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cCCCCCCCH--HHHHHHHHhcCCC---------cCc-----cccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 999965321 1111111111000 000 011233456789999999999999999999986
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=239.12 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=146.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++...+..++||||+++|+|.+.+... ..+++.....++.+++.|++|||..
T Consensus 55 ~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~-~~~~e~~~~~i~~qil~aL~~lH~~---- 129 (444)
T 3soa_A 55 QKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAR-EYYSEADASHCIQQILEAVLHCHQM---- 129 (444)
T ss_dssp HHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34668999999999999999999999999999999999999999999864 4589999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||++|
T Consensus 130 givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G 209 (444)
T 3soa_A 130 GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVG 209 (444)
T ss_dssp TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHS
T ss_pred CccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhC
Confidence 79999999531 01123589999999999988899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||.... ...+...+........ .+.+...+..+.+++.+|++.||++|||+.|+++
T Consensus 210 ~~Pf~~~~--~~~~~~~i~~~~~~~~--------------~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 210 YPPFWDED--QHRLYQQIKAGAYDFP--------------SPEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp SCSCCCSS--HHHHHHHHHHTCCCCC--------------TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCCCcc--HHHHHHHHHhCCCCCC--------------ccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 99996522 2222222222111100 0112233456789999999999999999999986
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=233.57 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=144.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. .+..+++.....++.|+++||+|||.
T Consensus 71 ~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~-- 148 (351)
T 3c0i_A 71 EDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHD-- 148 (351)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 3567899999999999999999999988899999999999999988864 23458899999999999999999995
Q ss_pred CCCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 524 SSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 524 ~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||
T Consensus 149 --~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l 226 (351)
T 3c0i_A 149 --NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFIL 226 (351)
T ss_dssp --TTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred --CCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHH
Confidence 479999998530 01123589999999999988899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++|+.||.... ..+...+...... .. ...+...+..+.+++.+||+.||++|||+.|+++
T Consensus 227 l~g~~pf~~~~---~~~~~~i~~~~~~-----~~---------~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 227 LSGCLPFYGTK---ERLFEGIIKGKYK-----MN---------PRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHSSCSSCSSH---HHHHHHHHHTCCC-----CC---------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHCCCCCCCcH---HHHHHHHHcCCCC-----CC---------ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 99999997521 1111111111000 00 0012233456889999999999999999999975
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=229.28 Aligned_cols=190 Identities=19% Similarity=0.313 Sum_probs=150.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||+++++++|.... .++++||+++|+|.+++......+++..+..++.++++||+|||..
T Consensus 62 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---- 136 (327)
T 3lzb_A 62 KEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---- 136 (327)
T ss_dssp HHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC----
Confidence 35667999999999999999999987654 6789999999999999987667799999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+|+|+|+|+... .....||+.|+|||++.+..++.++|||||||++|||+| |
T Consensus 137 ~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g 216 (327)
T 3lzb_A 137 RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216 (327)
T ss_dssp TCCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCC
Confidence 799999995410 111235778999999998889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+....... .+......+.+++.+||+.||.+||++.|+++.|+++.
T Consensus 217 ~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 277 (327)
T 3lzb_A 217 SKPYDGIP--ASEISSILEKGERLP-----------------QPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMA 277 (327)
T ss_dssp CCTTTTCC--GGGHHHHHHTTCCCC-----------------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHHcCCCCC-----------------CCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 99997632 222333333221111 01122345789999999999999999999999999986
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 278 ~~ 279 (327)
T 3lzb_A 278 RD 279 (327)
T ss_dssp TS
T ss_pred hC
Confidence 43
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=231.34 Aligned_cols=267 Identities=24% Similarity=0.293 Sum_probs=197.8
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 75 SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|++++ +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 46899999999998 6777665 79999999999998 5665 57899999999999984 555 7789999999
Q ss_pred ccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccc
Q 040540 155 EFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGR 234 (669)
Q Consensus 155 ~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (669)
++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++. |. .+++|+.|++++|.++ .
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-S 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-C
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC-C
Confidence 9999875 444 57889999999999885 5543 47899999999998864 43 3467889999999887 4
Q ss_pred cchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCccc
Q 040540 235 LPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314 (669)
Q Consensus 235 ~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 314 (669)
+| ..+++|+.|++++|++.+ +|.. .++|+.|++++|.+.. +|. .+++|+.|++++|++++.+
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp------ 237 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP------ 237 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC------
T ss_pred Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC------
Confidence 66 246788889999888875 3432 4678888888888873 443 2467888888888777643
Q ss_pred ccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCch
Q 040540 315 SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPH 394 (669)
Q Consensus 315 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~ 394 (669)
..+++|+.|++++|.++.. |. .+.+|..|++++|.++ .+|..+..+++|+.+++++|.+.+..|.
T Consensus 238 ------~~l~~L~~L~Ls~N~L~~l-p~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 ------VLPSELKELMVSGNRLTSL-PM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSCC-CC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ------CCCCcCcEEECCCCCCCcC-Cc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 2346778888888877643 22 2355666667766666 4556666666666666666666666655
Q ss_pred hhcC
Q 040540 395 DLCH 398 (669)
Q Consensus 395 ~~~~ 398 (669)
.+..
T Consensus 303 ~l~~ 306 (622)
T 3g06_A 303 ALRE 306 (622)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=232.97 Aligned_cols=186 Identities=20% Similarity=0.241 Sum_probs=139.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++... ..+++.+...++.++++||.|||..
T Consensus 93 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~L~~LH~~---- 167 (349)
T 2w4o_A 93 KIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEK-GYYSERDAADAVKQILEAVAYLHEN---- 167 (349)
T ss_dssp ------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35667999999999999999999999988999999999999999999754 4589999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+|+... .....||+.|+|||++.+..++.++|||||||++|||++|+
T Consensus 168 ~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~ 247 (349)
T 2w4o_A 168 GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGF 247 (349)
T ss_dssp TCCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred CeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCC
Confidence 799999985310 11234899999999999888999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||........ +...+...... ... +.+.+....+.+++.+|++.||++|||+.|+++
T Consensus 248 ~pf~~~~~~~~-~~~~i~~~~~~----~~~----------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 248 EPFYDERGDQF-MFRRILNCEYY----FIS----------PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp CTTCCTTCHHH-HHHHHHTTCCC----CCT----------TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCCCcccHH-HHHHHHhCCCc----cCC----------chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99965322111 11111111000 000 011233456789999999999999999999986
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=227.51 Aligned_cols=193 Identities=17% Similarity=0.296 Sum_probs=148.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++...+..++||||+++|+|.+++... ..+++..+..++.++++|++|||..
T Consensus 56 ~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---- 130 (294)
T 4eqm_A 56 KRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH-GPLSVDTAINFTNQILDGIKHAHDM---- 130 (294)
T ss_dssp HHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 45678999999999999999999999888999999999999999999754 4689999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+|+.. ......||+.|+|||.+.+..++.++||||+||++|||+||+.
T Consensus 131 ~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~ 210 (294)
T 4eqm_A 131 RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEP 210 (294)
T ss_dssp TCCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred CcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCC
Confidence 79999999541 0111248999999999998889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-CHHHHHHHHHHhHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-HMTDAAAKLKKIKV 659 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-s~~~v~~~l~~~~~ 659 (669)
||..... . .............. . .....+.+..+.+++.+|++.||.+|| +++++.+.|+.+..
T Consensus 211 pf~~~~~----~-~~~~~~~~~~~~~~-----~-----~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 211 PFNGETA----V-SIAIKHIQDSVPNV-----T-----TDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp SSCSSCH----H-HHHHHHHSSCCCCH-----H-----HHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred CCCCCCh----H-HHHHHHhhccCCCc-----c-----hhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 9975321 1 11111111111000 0 001123345678999999999999999 99999999988753
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-26 Score=243.34 Aligned_cols=190 Identities=23% Similarity=0.385 Sum_probs=148.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..++|||++++++++.. ...++|||||++|+|.++++.. +..+++.++..++.++++||+|||.
T Consensus 224 ~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---- 298 (452)
T 1fmk_A 224 EAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---- 298 (452)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 457789999999999999999999876 6678999999999999999752 3458999999999999999999995
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|||+|+.. ......++..|+|||++....++.++|||||||++|||+| |
T Consensus 299 ~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g 378 (452)
T 1fmk_A 299 MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG 378 (452)
T ss_dssp TTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCC
Confidence 479999999531 0011235678999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||..... ..+...+...... +.+..++..+.+++.+||+.||++|||++++++.|+++.
T Consensus 379 ~~P~~~~~~--~~~~~~i~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 379 RVPYPGMVN--REVLDQVERGYRM-----------------PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 439 (452)
T ss_dssp CCSSTTCCH--HHHHHHHHTTCCC-----------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred CCCCCCCCH--HHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 999875321 1122222221110 112233456789999999999999999999999999875
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 440 ~~ 441 (452)
T 1fmk_A 440 TS 441 (452)
T ss_dssp SC
T ss_pred cc
Confidence 43
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=231.01 Aligned_cols=192 Identities=21% Similarity=0.376 Sum_probs=151.3
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+..+..+ +|||++++++++...+..++||||+++|+|.+++.... ..+++.++..++.
T Consensus 85 ~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (334)
T 2pvf_A 85 SDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTY 164 (334)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHH
Confidence 3566789999999 89999999999999999999999999999999998643 2378999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
++++||+|||.. +++|+|+|+.. ......||+.|+|||++.+..++.++
T Consensus 165 qi~~aL~~LH~~----~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 240 (334)
T 2pvf_A 165 QLARGMEYLASQ----KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQS 240 (334)
T ss_dssp HHHHHHHHHHHT----TEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHH
T ss_pred HHHHHHHHHHhC----CeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHH
Confidence 999999999954 79999998531 01112367789999999888899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||+| |+.||.... ...+...+........ +..+...+.+++.+||+.||.
T Consensus 241 Di~slG~il~ellt~g~~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp~ 301 (334)
T 2pvf_A 241 DVWSFGVLMWEIFTLGGSPYPGIP--VEELFKLLKEGHRMDK-----------------PANCTNELYMMMRDCWHAVPS 301 (334)
T ss_dssp HHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGG
T ss_pred HHHHHHHHHHHHHhCCCCCcCcCC--HHHHHHHHhcCCCCCC-----------------CccCCHHHHHHHHHHccCChh
Confidence 99999999999999 999986532 1122222222211110 112234578999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHh
Q 040540 643 KRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~~ 661 (669)
+||++.|+++.|+++....
T Consensus 302 ~Rps~~ell~~L~~l~~~~ 320 (334)
T 2pvf_A 302 QRPTFKQLVEDLDRILTLT 320 (334)
T ss_dssp GSCCHHHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHhcc
Confidence 9999999999999987654
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=229.44 Aligned_cols=197 Identities=13% Similarity=0.075 Sum_probs=152.6
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+.++..+ +|+|++++++++......++||||+ +++|.+++......+++..+..|+.++++||+|||..
T Consensus 49 ~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~--- 124 (330)
T 2izr_A 49 PQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSK--- 124 (330)
T ss_dssp CCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 3566899999999 9999999999998888899999999 8999999987566799999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------c--------ccccccccccCccccccCCCcCccccchhh
Q 040540 526 APIIHCEGEDSV-----------------------------T--------QTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~--------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
+|+|||+|+.. . .....||+.|+|||++.+..++.++|||||
T Consensus 125 -~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl 203 (330)
T 2izr_A 125 -NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEAL 203 (330)
T ss_dssp -TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHH
T ss_pred -CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHH
Confidence 79999998430 0 023358999999999999889999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
||++|||++|+.||....... ..+.......... ..... ......+ .+.+++.+||+.||.+||++.
T Consensus 204 G~il~ell~g~~Pf~~~~~~~--~~~~~~~i~~~~~------~~~~~----~~~~~~p-~~~~li~~~l~~~p~~RP~~~ 270 (330)
T 2izr_A 204 GHMFMYFLRGSLPWQGLKADT--LKERYQKIGDTKR------ATPIE----VLCENFP-EMATYLRYVRRLDFFEKPDYD 270 (330)
T ss_dssp HHHHHHHHHSSCTTTTCCCSS--HHHHHHHHHHHHH------HSCHH----HHTTTCH-HHHHHHHHHHHCCTTCCCCHH
T ss_pred HHHHHHHhcCCCCcccccccc--HHHHHHHHHhhhc------cCCHH----HHhccCh-HHHHHHHHHHhCCCCCCCCHH
Confidence 999999999999997643222 1111110000000 00000 0001122 788999999999999999999
Q ss_pred HHHHHHHHhHHHh
Q 040540 649 DAAAKLKKIKVKF 661 (669)
Q Consensus 649 ~v~~~l~~~~~~~ 661 (669)
+|.+.|+++..+.
T Consensus 271 ~l~~~l~~~~~~~ 283 (330)
T 2izr_A 271 YLRKLFTDLFDRK 283 (330)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999887664
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=236.93 Aligned_cols=201 Identities=19% Similarity=0.238 Sum_probs=143.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.+++.++||||+++++++...+..++|||||++|+|.+++... ...+++.....|+.|+++||+|||..
T Consensus 71 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~--- 147 (389)
T 3gni_B 71 TFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM--- 147 (389)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 34667999999999999999999999999999999999999999999763 24589999999999999999999954
Q ss_pred CCeeecCCCCcc--------------------------------cccccccccccCccccccC--CCcCccccchhhHHH
Q 040540 526 APIIHCEGEDSV--------------------------------TQTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVL 571 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------------~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvi 571 (669)
+|+|||+|+.. ......||+.|+|||++.+ ..++.++|||||||+
T Consensus 148 -~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~i 226 (389)
T 3gni_B 148 -GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGIT 226 (389)
T ss_dssp -TEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHH
T ss_pred -CeecCCCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHH
Confidence 79999999541 0111258889999999887 569999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCcc-------------------ccccccc--------cchhhhhhhhHH
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLS-------------------EVVDTNL--------VREEQAFSAKMD 624 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~-------------------~~~~~~~--------~~~~~~~~~~~~ 624 (669)
+|||++|+.||........ +........+.... ......+ .......+.+..
T Consensus 227 l~el~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
T 3gni_B 227 ACELANGHVPFKDMPATQM-LLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRT 305 (389)
T ss_dssp HHHHHHSSCTTTTCCSTTH-HHHC--------------------------------------------------------
T ss_pred HHHHHHCCCCCCCCCHHHH-HHHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccc
Confidence 9999999999976332221 11111111100000 0000000 000011112334
Q ss_pred HHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 625 CLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 625 ~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
....+.+++.+||+.||++|||+.|+++
T Consensus 306 ~s~~~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 306 FSPHFHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 5567899999999999999999999985
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-26 Score=227.94 Aligned_cols=190 Identities=25% Similarity=0.372 Sum_probs=144.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++.. ..+++.....++.++++|++|||..+ ..
T Consensus 51 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~~-~~ 127 (271)
T 3dtc_A 51 ENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSG--KRIPPDILVNWAVQIARGMNYLHDEA-IV 127 (271)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCTTEEHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHSS-SS
T ss_pred HHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCC-CC
Confidence 3566789999999999999999999999899999999999999999964 46899999999999999999999652 12
Q ss_pred CeeecCCCCccc-------------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 527 PIIHCEGEDSVT-------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 527 ~i~h~d~~~~~~-------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
+++|+|+|+... .....||+.|+|||...+..++.++||||||+++|||
T Consensus 128 ~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l 207 (271)
T 3dtc_A 128 PIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWEL 207 (271)
T ss_dssp CCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred ceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHH
Confidence 499999985310 1122478999999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+||+.||..... ......+... ... .. .+...+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 208 ~~g~~p~~~~~~--~~~~~~~~~~---~~~----~~---------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~ 269 (271)
T 3dtc_A 208 LTGEVPFRGIDG--LAVAYGVAMN---KLA----LP---------IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLT 269 (271)
T ss_dssp HHCCCTTTTSCH--HHHHHHHHTS---CCC----CC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HhCCCCCCCCCH--HHHHHhhhcC---CCC----CC---------CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHh
Confidence 999999975321 1111111110 000 00 01123356789999999999999999999999998
Q ss_pred Hh
Q 040540 656 KI 657 (669)
Q Consensus 656 ~~ 657 (669)
++
T Consensus 270 ~l 271 (271)
T 3dtc_A 270 TI 271 (271)
T ss_dssp C-
T ss_pred cC
Confidence 64
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-25 Score=225.35 Aligned_cols=194 Identities=19% Similarity=0.262 Sum_probs=149.2
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.+..|+..+..++|+|++++++++......++||||+++++|.+++...+..+++..+..++.++++|++|||..
T Consensus 73 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~--- 149 (319)
T 2y4i_B 73 LKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAK--- 149 (319)
T ss_dssp CCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 34677899999999999999999999998889999999999999999987666789999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------cccccccccccCccccccC---------CCcCccccchh
Q 040540 526 APIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSE---------GIVSAKCDVYS 567 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~s 567 (669)
+++|+|+++.. ......||+.|+|||++.. ..++.++||||
T Consensus 150 -~i~H~dlkp~NIl~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~s 228 (319)
T 2y4i_B 150 -GILHKDLKSKNVFYDNGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFA 228 (319)
T ss_dssp -TCCCCCCCSTTEEEC--CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHH
T ss_pred -CccccCCChhhEEEeCCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHH
Confidence 79999998541 0011238899999998764 34789999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|||++|||+||+.||..... ..+...+........ ... ..+..+.+++.+||..||++|||+
T Consensus 229 lG~il~el~~g~~p~~~~~~--~~~~~~~~~~~~~~~---~~~-------------~~~~~l~~li~~~l~~~p~~Rpt~ 290 (319)
T 2y4i_B 229 LGTIWYELHAREWPFKTQPA--EAIIWQMGTGMKPNL---SQI-------------GMGKEISDILLFCWAFEQEERPTF 290 (319)
T ss_dssp HHHHHHHHHHSSCSSSSCCH--HHHHHHHHTTCCCCC---CCS-------------SCCTTHHHHHHHHHCSSTTTSCCH
T ss_pred HHHHHHHHHhCCCCCCCCCH--HHHHHHhccCCCCCC---CcC-------------CCCHHHHHHHHHHhcCChhhCcCH
Confidence 99999999999999975321 111111111111110 000 112346799999999999999999
Q ss_pred HHHHHHHHHhHHHh
Q 040540 648 TDAAAKLKKIKVKF 661 (669)
Q Consensus 648 ~~v~~~l~~~~~~~ 661 (669)
.+++++|+++..+.
T Consensus 291 ~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 291 TKLMDMLEKLPKRN 304 (319)
T ss_dssp HHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987664
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-24 Score=211.91 Aligned_cols=223 Identities=22% Similarity=0.241 Sum_probs=177.1
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccc
Q 040540 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI 158 (669)
Q Consensus 79 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (669)
..+..+..+. .+|..+. ++|++|++++|++.+..+..|.++++|++|+|++|++++..+..+.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4556666665 4666554 579999999999998777789999999999999999998888889999999999999999
Q ss_pred ccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC-CCccccCCCCCcEEEcccCCCccccch
Q 040540 159 IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL-IPPTIFNISTMRILTLESNQLSGRLPS 237 (669)
Q Consensus 159 l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (669)
+.+..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+++. +|..+.++++|++|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9988888999999999999999999887777899999999999999999874 588899999999999999998754444
Q ss_pred hhhccCCCCC----eeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 238 TIGHSLRNIE----YLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 238 ~~~~~l~~L~----~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
.+. .+.+|+ +|++++|.+.+..+..+. ..+|+.|++++|.+.+..+..|..+++|+.|++++|.++.
T Consensus 168 ~~~-~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 168 DLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGH-HHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred Hhh-hhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 443 455555 777888887765554443 3467777777777776555556667777777777666543
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-26 Score=233.25 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=140.7
Q ss_pred hhhhhccccccccceecccc-----ccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC---
Q 040540 452 ECEVLRNVRHRNLIKIISSC-----SNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH--- 523 (669)
Q Consensus 452 e~~~l~~l~h~niv~l~~~~-----~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--- 523 (669)
++..+..++|+|++++++.+ ......++||||+++|+|.+++.... .++..+..|+.++++||+|||...
T Consensus 57 ~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH~~~~~~ 134 (336)
T 3g2f_A 57 NIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLHTELPRG 134 (336)
T ss_dssp HHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCCG
T ss_pred HHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHHhhhccc
Confidence 33345568999999998743 22345689999999999999997543 588899999999999999999431
Q ss_pred --CCCCeeecCCCCcc--------------c-------------------ccccccccccCccccccC-------CCcCc
Q 040540 524 --SSAPIIHCEGEDSV--------------T-------------------QTTTMATIGYMAPEYGSE-------GIVSA 561 (669)
Q Consensus 524 --~~~~i~h~d~~~~~--------------~-------------------~~~~~gt~~y~aPE~~~~-------~~~~~ 561 (669)
..++|+|||+|+.. . .....||+.|+|||++.+ ..++.
T Consensus 135 ~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~ 214 (336)
T 3g2f_A 135 DHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALK 214 (336)
T ss_dssp GGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHH
T ss_pred cccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCccccccccccc
Confidence 12289999999531 0 012248999999999876 45678
Q ss_pred cccchhhHHHHHHHHhCCCCCCcCCCC-Cc--c----------HHHHHHHhCCCCccccccccccchhhhhhhhHHHHHH
Q 040540 562 KCDVYSYGVLLMETFTRKRPTDEMFTG-EM--S----------LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLS 628 (669)
Q Consensus 562 ~~Dv~s~Gvil~el~tg~~p~~~~~~~-~~--~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (669)
++|||||||++|||+||+.|+...... .. . ...+.......... +.+.. .......++..
T Consensus 215 ~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~ 287 (336)
T 3g2f_A 215 QVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQR----PKFPE---AWKENSLAVRS 287 (336)
T ss_dssp HHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC----CCCCT---TCCCCSHHHHH
T ss_pred ccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccC----CCCCc---ccccccchHHH
Confidence 999999999999999998776432211 10 0 00000000000000 11100 01112345667
Q ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHhHHHhhh
Q 040540 629 IMDLALDCCMESPDKRMHMTDAAAKLKKIKVKFLD 663 (669)
Q Consensus 629 ~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~~~~ 663 (669)
+.+++.+||+.||++|||+.||++.|+++...+.+
T Consensus 288 l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~ 322 (336)
T 3g2f_A 288 LKETIEDCWDQDAEARLTAQXAEERMAELMMIWER 322 (336)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999876543
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=225.08 Aligned_cols=206 Identities=20% Similarity=0.207 Sum_probs=149.9
Q ss_pred cCchhhhhhccccccccceecccccccc--ccceeeccCCCCChHHhhhcCCC--ccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+.++..++|||++++++++.... ..++||||+++|+|.+++..... .+++.....++.++++||+|||..
T Consensus 53 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~- 131 (319)
T 4euu_A 53 VQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN- 131 (319)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence 4557899999999999999999887654 66899999999999999986332 389999999999999999999954
Q ss_pred CCCCeeecCCCCccc----------------------------ccccccccccCcccccc--------CCCcCccccchh
Q 040540 524 SSAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGS--------EGIVSAKCDVYS 567 (669)
Q Consensus 524 ~~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~s 567 (669)
+|+|+|+|+... .....||+.|+|||++. +..++.++||||
T Consensus 132 ---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~Diws 208 (319)
T 4euu_A 132 ---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS 208 (319)
T ss_dssp ---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHH
T ss_pred ---CEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHH
Confidence 799999985411 11234899999999875 467899999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCC--ccHHHHHHHhCCCC-ccccc---ccccc---chhhhhhhhHHHHHHHHHHHhhccc
Q 040540 568 YGVLLMETFTRKRPTDEMFTGE--MSLRRWVKESLPHR-LSEVV---DTNLV---REEQAFSAKMDCLLSIMDLALDCCM 638 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~--~~l~~~~~~~~~~~-~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~l~~~c~~ 638 (669)
|||++|||+||+.||....... ..+..-+....+.. +...- ...+. ...............+.+++.+|++
T Consensus 209 lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~ 288 (319)
T 4euu_A 209 IGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILE 288 (319)
T ss_dssp HHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhcc
Confidence 9999999999999996532211 12222222222221 11110 00000 0000112245667788999999999
Q ss_pred CCCCCCCCHHHHHHHHHHh
Q 040540 639 ESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 639 ~~P~~Rps~~~v~~~l~~~ 657 (669)
.||++|||+.|+++...+.
T Consensus 289 ~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 289 ADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp CCTTTSCCHHHHHHHHHHH
T ss_pred CChhhhccHHHhhhccHHH
Confidence 9999999999999877654
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-25 Score=226.07 Aligned_cols=194 Identities=20% Similarity=0.365 Sum_probs=148.3
Q ss_pred ccCchhhhhhccccccccceecccccccc-----ccceeeccCCCCChHHhhhc-----CCCccCHHHHHHHHHhHHhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD-----FKALVLEFMPNGSLEKWLYS-----HNYFLDILERLNIMIDVGSAL 516 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~~lv~ey~~~g~L~~~l~~-----~~~~l~~~~~~~i~~~i~~~l 516 (669)
+.+..|+..+..++|||++++++++.... ..++||||+++|+|.+++.. ....+++..+..++.++++||
T Consensus 81 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL 160 (313)
T 3brb_A 81 EEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGM 160 (313)
T ss_dssp HHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHH
Confidence 45677999999999999999999987644 34899999999999999853 235689999999999999999
Q ss_pred hhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhH
Q 040540 517 EYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569 (669)
Q Consensus 517 ~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G 569 (669)
.|||. .+++|+|+|+.. ......|++.|+|||...+..++.++||||||
T Consensus 161 ~~LH~----~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG 236 (313)
T 3brb_A 161 EYLSN----RNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFG 236 (313)
T ss_dssp HHHHT----TTCCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHh----CCcccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHH
Confidence 99994 479999999541 00112367789999999888899999999999
Q ss_pred HHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 570 VLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 570 vil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
+++|||+| |+.||.... ...+...+........ +...+..+.+++.+||..||++|||+.
T Consensus 237 ~il~el~~~g~~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp~~Rps~~ 297 (313)
T 3brb_A 237 VTMWEIATRGMTPYPGVQ--NHEMYDYLLHGHRLKQ-----------------PEDCLDELYEIMYSCWRTDPLDRPTFS 297 (313)
T ss_dssp HHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCCCCC-----------------BTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred HHHHHHHhcCCCCCccCC--HHHHHHHHHcCCCCCC-----------------CccccHHHHHHHHHHcCCChhhCcCHH
Confidence 99999999 888986532 2223332222211100 112334678999999999999999999
Q ss_pred HHHHHHHHhHHHhhh
Q 040540 649 DAAAKLKKIKVKFLD 663 (669)
Q Consensus 649 ~v~~~l~~~~~~~~~ 663 (669)
++++.|+++...+++
T Consensus 298 ~l~~~L~~l~~~lp~ 312 (313)
T 3brb_A 298 VLRLQLEKLLESLPD 312 (313)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999877653
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-26 Score=234.18 Aligned_cols=197 Identities=13% Similarity=0.100 Sum_probs=148.3
Q ss_pred cCchhhhhhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+..+..++|+|++++++++.. ....++||||+ +++|.+++...+ .+++.++..|+.|+++||+|||..
T Consensus 94 ~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~~- 170 (345)
T 2v62_A 94 DCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIHEN- 170 (345)
T ss_dssp HHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhccccccCcceeecccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhC-
Confidence 35567788888999999999999877 67789999999 999999998644 789999999999999999999954
Q ss_pred CCCCeeecCCCCccc----------------------------------ccccccccccCccccccCCCcCccccchhhH
Q 040540 524 SSAPIIHCEGEDSVT----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569 (669)
Q Consensus 524 ~~~~i~h~d~~~~~~----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G 569 (669)
+|+|||+|+... .....||+.|+|||++.+..++.++||||||
T Consensus 171 ---~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG 247 (345)
T 2v62_A 171 ---EYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILG 247 (345)
T ss_dssp ---TEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHH
T ss_pred ---CeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHH
Confidence 899999984300 0223589999999999988899999999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|++|||+||+.||.........+........ ......+... ......+..+.+++.+||..||++||++.+
T Consensus 248 ~il~ell~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ 318 (345)
T 2v62_A 248 YCMLRWLCGKLPWEQNLKDPVAVQTAKTNLL-DELPQSVLKW--------APSGSSCCEIAQFLVCAHSLAYDEKPNYQA 318 (345)
T ss_dssp HHHHHHHHSSCTTGGGTTCHHHHHHHHHHHH-HTTTHHHHHH--------SCTTSCCHHHHHHHHHHHTCCTTCCCCHHH
T ss_pred HHHHHHHhCCCCccccccccHHHHHHHHhhc-ccccHHHHhh--------ccccccHHHHHHHHHHHhhcCcccCCCHHH
Confidence 9999999999999653322222211111110 0000000000 000133457889999999999999999999
Q ss_pred HHHHHHHhHH
Q 040540 650 AAAKLKKIKV 659 (669)
Q Consensus 650 v~~~l~~~~~ 659 (669)
|++.|+++..
T Consensus 319 l~~~L~~~~~ 328 (345)
T 2v62_A 319 LKKILNPHGI 328 (345)
T ss_dssp HHHHHCTTCC
T ss_pred HHHHHhccCC
Confidence 9999987643
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-25 Score=228.15 Aligned_cols=180 Identities=20% Similarity=0.177 Sum_probs=142.6
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|||++++++++...+..++||||+++|+|.+++... ..+++.....++.+++.||+|||.. +
T Consensus 51 ~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~----~ 125 (337)
T 1o6l_A 51 HTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHSR----D 125 (337)
T ss_dssp HHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567888999999999999999999999999999999999999999753 4588999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.||
T Consensus 126 ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf 205 (337)
T 1o6l_A 126 VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPF 205 (337)
T ss_dssp CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred eecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCC
Confidence 9999999530 112345999999999999988999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
.... ...+...+.... ... +......+.+++.+|++.||.+|| +++||++
T Consensus 206 ~~~~--~~~~~~~i~~~~-~~~-----------------p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 206 YNQD--HERLFELILMEE-IRF-----------------PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp CCSS--HHHHHHHHHHCC-CCC-----------------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred CCCC--HHHHHHHHHcCC-CCC-----------------CCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 6532 111211111110 000 112234578999999999999999 8888865
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-25 Score=249.06 Aligned_cols=190 Identities=20% Similarity=0.324 Sum_probs=148.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++||||++++++|.. +..++|||||++|+|.+++... ..+++..+..|+.++++||+|||..
T Consensus 415 ~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~---- 488 (635)
T 4fl3_A 415 DELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEES---- 488 (635)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCCCCHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 457789999999999999999999864 4568999999999999999753 4689999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+.. ......||+.|+|||++....++.++|||||||++|||+|
T Consensus 489 ~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~ 568 (635)
T 4fl3_A 489 NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSY 568 (635)
T ss_dssp TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhC
Confidence 79999999541 0111235678999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+....... .+..++..+.+++.+||+.||++||++.+|++.|+++
T Consensus 569 G~~Pf~~~~~--~~~~~~i~~~~~~~-----------------~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 569 GQKPYRGMKG--SEVTAMLEKGERMG-----------------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp TCCSSTTCCH--HHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCH--HHHHHHHHcCCCCC-----------------CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 9999976322 12222222221110 1223345678999999999999999999999999987
Q ss_pred HHHh
Q 040540 658 KVKF 661 (669)
Q Consensus 658 ~~~~ 661 (669)
...+
T Consensus 630 ~~~l 633 (635)
T 4fl3_A 630 YYDV 633 (635)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-26 Score=230.59 Aligned_cols=201 Identities=20% Similarity=0.357 Sum_probs=147.9
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|+|++++++++... ...++||||+++|+|.+++......+++..+..++.++++|++|||.
T Consensus 68 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~--- 144 (302)
T 4e5w_A 68 ADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS--- 144 (302)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhc---
Confidence 4566799999999999999999998775 56789999999999999997666678999999999999999999995
Q ss_pred CCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+.. ......||..|+|||++.+..++.++||||+|+++|||+
T Consensus 145 -~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~ 223 (302)
T 4e5w_A 145 -RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELL 223 (302)
T ss_dssp -TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred -CCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHH
Confidence 479999999541 011224777899999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcccc---ccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEV---VDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||+.|+.... ..+.....+...... +...+ ....+.+.+...+..+.+++.+||+.||.+|||+.|++++
T Consensus 224 ~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 296 (302)
T 4e5w_A 224 TYCDSDSSPM------ALFLKMIGPTHGQMTVTRLVNTL-KEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEG 296 (302)
T ss_dssp TTTCGGGSHH------HHHHHHHCSCCGGGHHHHHHHHH-HTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred HccCCCcchh------hHHhhccCCcccccCHHHHHHHH-hccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 9999864311 111110000000000 00000 0000011122344568899999999999999999999999
Q ss_pred HHHhH
Q 040540 654 LKKIK 658 (669)
Q Consensus 654 l~~~~ 658 (669)
|+++.
T Consensus 297 L~~ll 301 (302)
T 4e5w_A 297 FEALL 301 (302)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-26 Score=233.54 Aligned_cols=205 Identities=23% Similarity=0.392 Sum_probs=149.5
Q ss_pred ccCchhhhhhccccccccceecccccccc--ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|+|++++++++.... ..++||||+++|+|.+++......+++.++..++.++++||+|||.
T Consensus 87 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~--- 163 (326)
T 2w1i_A 87 RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT--- 163 (326)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 45678999999999999999999886643 6789999999999999998766678999999999999999999995
Q ss_pred CCCeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+... .....|+..|+|||...+..++.++|||||||++|||+
T Consensus 164 -~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 242 (326)
T 2w1i_A 164 -KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 242 (326)
T ss_dssp -TTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred -CCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHH
Confidence 4899999995410 01123667799999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcccccccc---ccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTN---LVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||+.|+.... ..+.+.............. ......+.+.+..++..+.+++.+||+.||++|||+.|+++.
T Consensus 243 tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~ 316 (326)
T 2w1i_A 243 TYIEKSKSPP------AEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALR 316 (326)
T ss_dssp HTTCGGGSHH------HHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred hcCCCCCCCH------HHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence 9999875321 0000000000000000000 000000001122344568899999999999999999999999
Q ss_pred HHHhHHHh
Q 040540 654 LKKIKVKF 661 (669)
Q Consensus 654 l~~~~~~~ 661 (669)
|+++++.+
T Consensus 317 L~~l~~~l 324 (326)
T 2w1i_A 317 VDQIRDQM 324 (326)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-25 Score=228.20 Aligned_cols=192 Identities=25% Similarity=0.406 Sum_probs=150.2
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+.++..+ +|||++++++++...+..++||||+++|+|.+++.... ..+++..+..++.
T Consensus 70 ~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 149 (327)
T 1fvr_A 70 RDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 149 (327)
T ss_dssp CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHH
Confidence 4567799999999 89999999999998889999999999999999997643 3689999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccch
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
++++||+|||. .+++|+|+|+.. ......+++.|+|||++.+..++.++|||
T Consensus 150 qi~~aL~~LH~----~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~ 225 (327)
T 1fvr_A 150 DVARGMDYLSQ----KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVW 225 (327)
T ss_dssp HHHHHHHHHHH----TTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHH
T ss_pred HHHHHHHHHHh----CCccCCCCccceEEEcCCCeEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcch
Confidence 99999999995 489999999541 01112367889999999888899999999
Q ss_pred hhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
||||++|||+| |+.||..... ..+...+..... .. .+......+.+++.+||+.||++||
T Consensus 226 slG~il~ellt~g~~pf~~~~~--~~~~~~~~~~~~--------~~---------~~~~~~~~l~~li~~~l~~dp~~Rp 286 (327)
T 1fvr_A 226 SYGVLLWEIVSLGGTPYCGMTC--AELYEKLPQGYR--------LE---------KPLNCDDEVYDLMRQCWREKPYERP 286 (327)
T ss_dssp HHHHHHHHHHTTSCCTTTTCCH--HHHHHHGGGTCC--------CC---------CCTTBCHHHHHHHHHHTCSSGGGSC
T ss_pred HHHHHHHHHHcCCCCCCCCCcH--HHHHHHhhcCCC--------CC---------CCCCCCHHHHHHHHHHccCChhhCc
Confidence 99999999998 9999865321 111111111100 00 0112335678999999999999999
Q ss_pred CHHHHHHHHHHhHHHh
Q 040540 646 HMTDAAAKLKKIKVKF 661 (669)
Q Consensus 646 s~~~v~~~l~~~~~~~ 661 (669)
|+.|+++.|+++....
T Consensus 287 s~~ell~~L~~~~~~~ 302 (327)
T 1fvr_A 287 SFAQILVSLNRMLEER 302 (327)
T ss_dssp CHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987653
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=229.14 Aligned_cols=193 Identities=18% Similarity=0.321 Sum_probs=150.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---------CccCHHHHHHHHHhHHhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------~~l~~~~~~~i~~~i~~~l~~ 518 (669)
.+..|+..+..++|+|++++++++......++||||+++|+|.+++...+ ..+++..+..++.++++||+|
T Consensus 74 ~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~ 153 (322)
T 1p4o_A 74 EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAY 153 (322)
T ss_dssp HHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999998889999999999999999997521 346889999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
||.. +++|+|+|+.. ......||+.|+|||++.+..++.++||||+||+
T Consensus 154 lH~~----~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i 229 (322)
T 1p4o_A 154 LNAN----KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 229 (322)
T ss_dssp HHHT----TCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHC----CCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHH
Confidence 9954 79999998531 0011236788999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+|||+| |+.||.... ...+...+....... .+...+..+.+++.+||+.||.+|||+.|+
T Consensus 230 l~el~~~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~e~ 290 (322)
T 1p4o_A 230 LWEIATLAEQPYQGLS--NEQVLRFVMEGGLLD-----------------KPDNCPDMLFELMRMCWQYNPKMRPSFLEI 290 (322)
T ss_dssp HHHHHHTSCCTTTTSC--HHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHhcCCCccccCC--HHHHHHHHHcCCcCC-----------------CCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 999999 888986532 112222222111000 011233457899999999999999999999
Q ss_pred HHHHHHhHHHhhh
Q 040540 651 AAKLKKIKVKFLD 663 (669)
Q Consensus 651 ~~~l~~~~~~~~~ 663 (669)
++.|+++.....+
T Consensus 291 l~~L~~~~~~~~~ 303 (322)
T 1p4o_A 291 ISSIKEEMEPGFR 303 (322)
T ss_dssp HHHHGGGSCTTHH
T ss_pred HHHHHHhhccCCc
Confidence 9999987554443
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-25 Score=228.50 Aligned_cols=192 Identities=19% Similarity=0.376 Sum_probs=146.9
Q ss_pred ccCchhhhhhccccccccceecccccccccc------ceeeccCCCCChHHhhhcC-----CCccCHHHHHHHHHhHHhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFK------ALVLEFMPNGSLEKWLYSH-----NYFLDILERLNIMIDVGSA 515 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~------~lv~ey~~~g~L~~~l~~~-----~~~l~~~~~~~i~~~i~~~ 515 (669)
+.+..|+..+..++|||++++++++...... ++||||+++|+|.+++... ...+++..+..++.++++|
T Consensus 70 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~a 149 (323)
T 3qup_A 70 EEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACG 149 (323)
T ss_dssp HHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998776554 8999999999999999642 2258999999999999999
Q ss_pred hhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhh
Q 040540 516 LEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 516 l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
++|||.. +++|+|+|+... .....|++.|+|||.+.+..++.++|||||
T Consensus 150 l~~LH~~----~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl 225 (323)
T 3qup_A 150 MEYLSSR----NFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAF 225 (323)
T ss_dssp HHHHHHT----TCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHcC----CcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhH
Confidence 9999954 799999995410 011235678999999988889999999999
Q ss_pred HHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 569 GVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 569 Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||++|||+| |+.||.... ...+...+....... .+...+..+.+++.+||+.||++|||+
T Consensus 226 G~il~ell~~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~ 286 (323)
T 3qup_A 226 GVTMWEIMTRGQTPYAGIE--NAEIYNYLIGGNRLK-----------------QPPECMEEVYDLMYQCWSADPKQRPSF 286 (323)
T ss_dssp HHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHTTCSSGGGSCCH
T ss_pred HHHHHHHHhCCCCCccccC--hHHHHHHHhcCCCCC-----------------CCCccCHHHHHHHHHHccCChhhCcCH
Confidence 999999999 899987632 222222222211100 011233467899999999999999999
Q ss_pred HHHHHHHHHhHHHh
Q 040540 648 TDAAAKLKKIKVKF 661 (669)
Q Consensus 648 ~~v~~~l~~~~~~~ 661 (669)
.++++.|+++....
T Consensus 287 ~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 287 TCLRMELENILGHL 300 (323)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-25 Score=226.04 Aligned_cols=195 Identities=21% Similarity=0.238 Sum_probs=149.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
..+..|+..+..++|+|++++++++...+..++||||+++|+|.+++.. ....+++.....++.++++|+.|||..
T Consensus 77 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~- 155 (310)
T 2wqm_A 77 ADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR- 155 (310)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC-
Confidence 3566799999999999999999999988899999999999999999964 345689999999999999999999954
Q ss_pred CCCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 524 SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++||||||+++|||++|
T Consensus 156 ---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g 232 (310)
T 2wqm_A 156 ---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 232 (310)
T ss_dssp ---TCCCCCCCGGGEEECTTSCEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred ---CeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhC
Confidence 79999998531 01122488999999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.........+...+... ... ... .......+.+++.+||..||++|||+.+|++.|++++
T Consensus 233 ~~p~~~~~~~~~~~~~~~~~~---~~~-----~~~--------~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~ 296 (310)
T 2wqm_A 233 QSPFYGDKMNLYSLCKKIEQC---DYP-----PLP--------SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMH 296 (310)
T ss_dssp SCTTC---CCHHHHHHHHHTT---CSC-----CCC--------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCcccchhHHHHHHHhhcc---cCC-----CCc--------ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 999865322221222222111 100 000 1122345789999999999999999999999999998
Q ss_pred HHh
Q 040540 659 VKF 661 (669)
Q Consensus 659 ~~~ 661 (669)
+..
T Consensus 297 ~~~ 299 (310)
T 2wqm_A 297 ACT 299 (310)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-25 Score=227.05 Aligned_cols=191 Identities=21% Similarity=0.352 Sum_probs=150.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC------CccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN------YFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~------~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
..+..|+..+..++|||++++++++......++||||+++|+|.+++.... ..+++.++..++.++++|+.|||
T Consensus 78 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH 157 (327)
T 2yfx_A 78 LDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 157 (327)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 356678999999999999999999999888999999999999999998643 34889999999999999999999
Q ss_pred cCCCCCCeeecCCCCccc------------------------------ccccccccccCccccccCCCcCccccchhhHH
Q 040540 521 HGHSSAPIIHCEGEDSVT------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGV 570 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~~------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv 570 (669)
.. +++|+|+++... .....||+.|+|||++.+..++.++|||||||
T Consensus 158 ~~----~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ 233 (327)
T 2yfx_A 158 EN----HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGV 233 (327)
T ss_dssp HT----TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred hC----CeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHH
Confidence 54 799999985310 01124678899999998888999999999999
Q ss_pred HHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 571 LLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 571 il~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
++|||+| |+.||.... ...+...+........ +......+.+++.+||+.||.+||++.|
T Consensus 234 il~ellt~g~~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ 294 (327)
T 2yfx_A 234 LLWEIFSLGYMPYPSKS--NQEVLEFVTSGGRMDP-----------------PKNCPGPVYRIMTQCWQHQPEDRPNFAI 294 (327)
T ss_dssp HHHHHHTTSCCSSTTCC--HHHHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred HHHHHHcCCCCCCCCcC--HHHHHHHHhcCCCCCC-----------------CCCCCHHHHHHHHHHhcCChhhCcCHHH
Confidence 9999999 999986532 1222333322211100 1122345789999999999999999999
Q ss_pred HHHHHHHhHHH
Q 040540 650 AAAKLKKIKVK 660 (669)
Q Consensus 650 v~~~l~~~~~~ 660 (669)
+++.|+.+...
T Consensus 295 ll~~l~~~~~~ 305 (327)
T 2yfx_A 295 ILERIEYCTQD 305 (327)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999988654
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=225.12 Aligned_cols=192 Identities=20% Similarity=0.329 Sum_probs=150.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++ .....++||||+++++|.+++... ..+++.....++.++++|++|||..
T Consensus 63 ~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---- 136 (291)
T 1xbb_A 63 DELLAEANVMQQLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEES---- 136 (291)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEEEEEeCCCCCHHHHHHhC-cCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 4567899999999999999999998 455678999999999999999864 4589999999999999999999954
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++... .....||+.|+|||.+.+..++.++||||||+++|||+|
T Consensus 137 ~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~ 216 (291)
T 1xbb_A 137 NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSY 216 (291)
T ss_dssp TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred CeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhc
Confidence 799999995410 011125678999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+....... .+...+..+.+++.+||+.||++||++.++++.|+++
T Consensus 217 g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 217 GQKPYRGMK--GSEVTAMLEKGERMG-----------------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp TCCSSTTCC--HHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCCCC--HHHHHHHHHcCCCCC-----------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 999987532 222233322221110 0112345678999999999999999999999999998
Q ss_pred HHHhhh
Q 040540 658 KVKFLD 663 (669)
Q Consensus 658 ~~~~~~ 663 (669)
-....+
T Consensus 278 ~~~~~~ 283 (291)
T 1xbb_A 278 YYDVVN 283 (291)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776544
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-25 Score=224.05 Aligned_cols=191 Identities=21% Similarity=0.335 Sum_probs=152.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+..++|+|++++++++......++||||+++|+|.+++... ...+++..+..++.++++|++|||..
T Consensus 54 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--- 130 (288)
T 3kfa_A 54 EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK--- 130 (288)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---
Confidence 45678999999999999999999999988999999999999999999763 34689999999999999999999954
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||+|+++|||++ |
T Consensus 131 -~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g 209 (288)
T 3kfa_A 131 -NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 209 (288)
T ss_dssp -TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred -CccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCC
Confidence 79999999541 0111236778999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+....... .+...+..+.+++.+|+..||.+|||+.|+++.|+++.
T Consensus 210 ~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~ 270 (288)
T 3kfa_A 210 MSPYPGID--LSQVYELLEKDYRME-----------------RPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 270 (288)
T ss_dssp CCSSTTCC--GGGHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHhccCCCC-----------------CCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence 99987532 222333332221110 01123356789999999999999999999999999886
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 271 ~~ 272 (288)
T 3kfa_A 271 QE 272 (288)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=212.74 Aligned_cols=203 Identities=20% Similarity=0.214 Sum_probs=120.3
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
.++.|+++++.+.. + +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..++++++|++|+|+
T Consensus 42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 45666666666542 1 2355666666666666666542 356666666666666666665555556666666666666
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+|++++..+..+.++++|++|++++|.+++..+..++.+++|++|++++|++++..+..++.+++|++|++++|.+++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 66666555555666666666666666666555555566666666666666666555555566666666666666666555
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 266 (669)
|..+..+++|+.|++++|.+.+ .++++++|+++.|++.|.+|.+++.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 5555556666666666665543 2334555555555555555554443
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-25 Score=224.29 Aligned_cols=199 Identities=20% Similarity=0.201 Sum_probs=145.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||++ |++.+++......+++.....++.++++||+|||. .+
T Consensus 65 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~----~~ 139 (311)
T 3niz_A 65 TAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQ----HR 139 (311)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45679999999999999999999999899999999998 58999888766678999999999999999999995 48
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||++|+.|
T Consensus 140 ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p 219 (311)
T 3niz_A 140 ILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPL 219 (311)
T ss_dssp EECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred cccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCC
Confidence 9999999531 0112358999999999876 5689999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhC---CCCccccccc--------cccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESL---PHRLSEVVDT--------NLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
|....... .+.......- +..+....+. .................++.+++.+|++.||++|||++|+
T Consensus 220 f~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 298 (311)
T 3niz_A 220 FPGVTDDD-QLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDA 298 (311)
T ss_dssp CCCSSTTT-HHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred CCCCChHH-HHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 97643222 2222222111 1111110000 0000000000111234567899999999999999999999
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
++
T Consensus 299 l~ 300 (311)
T 3niz_A 299 MN 300 (311)
T ss_dssp HT
T ss_pred hc
Confidence 75
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-25 Score=228.34 Aligned_cols=179 Identities=19% Similarity=0.275 Sum_probs=141.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+..+..++|||++++++++..+...++||||+ +|+|.+++... ..+++.+...++.+++.|+.|||.. +
T Consensus 55 ~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~g~l~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~----g 128 (336)
T 3h4j_B 55 RVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEK-KRMTEDEGRRFFQQIICAIEYCHRH----K 128 (336)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-CEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-CCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4667999999999999999999999999999999999 68999998753 4589999999999999999999954 7
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|||+|+.. ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||
T Consensus 129 ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf 208 (336)
T 3h4j_B 129 IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPF 208 (336)
T ss_dssp CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEecCCchhhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCC
Confidence 9999999541 1123458999999999988765 78999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
........ ...+..... ..+...+..+.+++.+|++.||.+|||++|+++
T Consensus 209 ~~~~~~~~--------------~~~i~~~~~------~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 209 DDEFIPNL--------------FKKVNSCVY------VMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp BCSSSTTC--------------BCCCCSSCC------CCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred CCccHHHH--------------HHHHHcCCC------CCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 75322111 000000000 011223456789999999999999999999975
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-25 Score=226.74 Aligned_cols=185 Identities=21% Similarity=0.238 Sum_probs=142.6
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
...|+.++.++ +|||++++++++......++||||+++|+|.+++... ..+++.....++.+++.|++|||.. +
T Consensus 62 ~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH~~----g 136 (342)
T 2qr7_A 62 PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ-KFFSEREASAVLFTITKTVEYLHAQ----G 136 (342)
T ss_dssp CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 45678888777 7999999999999999999999999999999999754 4589999999999999999999954 7
Q ss_pred eeecCCCCcc-----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 528 IIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 528 i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
|+|||+|+.. ......||+.|+|||++.+..|+.++||||+||++|||++|
T Consensus 137 ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g 216 (342)
T 2qr7_A 137 VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTG 216 (342)
T ss_dssp EECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcC
Confidence 9999998431 01123579999999999887799999999999999999999
Q ss_pred CCCCCcCCCCC-ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGE-MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||....... ..+...+...... ... ..+...+..+.+++.+|+..||++||++.|+++
T Consensus 217 ~~Pf~~~~~~~~~~~~~~i~~~~~~---------~~~-----~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 217 YTPFANGPDDTPEEILARIGSGKFS---------LSG-----GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp SCSSCSSTTSCHHHHHHHHHHCCCC---------CCS-----TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHccCCcc---------cCc-----cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 99997532111 1122222211100 000 012233456789999999999999999999875
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-25 Score=222.27 Aligned_cols=192 Identities=26% Similarity=0.361 Sum_probs=148.0
Q ss_pred ccCchhhhhhccccccccceeccccccc-cccceeeccCCCCChHHhhhcCCC-ccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP-DFKALVLEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|+|++++++++... ...++||||+++|+|.+++..... .+++.....++.++++|++|||..
T Consensus 59 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-- 136 (278)
T 1byg_A 59 QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-- 136 (278)
T ss_dssp HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 4567899999999999999999987554 468999999999999999975332 378889999999999999999954
Q ss_pred CCCeeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCC
Q 040540 525 SAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRP 581 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p 581 (669)
+++|+|+++.. ......+++.|+|||+..+..++.++||||||+++|||+| |+.|
T Consensus 137 --~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p 214 (278)
T 1byg_A 137 --NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 214 (278)
T ss_dssp --TCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred --CccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCC
Confidence 79999998541 0112246788999999988889999999999999999999 9999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
|..... ..+...+...... . .+...+..+.+++.+||..||++||++.|+++.|++++.+.
T Consensus 215 ~~~~~~--~~~~~~~~~~~~~--------~---------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 215 YPRIPL--KDVVPRVEKGYKM--------D---------APDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp CTTSCG--GGHHHHHTTTCCC--------C---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred CCCCCH--HHHHHHHhcCCCC--------C---------CcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 875322 2222222111100 0 01223456789999999999999999999999999998763
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-25 Score=223.19 Aligned_cols=182 Identities=19% Similarity=0.285 Sum_probs=126.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++......+++..+..++.++++|++|||..
T Consensus 56 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---- 131 (278)
T 3cok_A 56 QRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH---- 131 (278)
T ss_dssp HHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3466789999999999999999999988889999999999999999987667789999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||||+++|||+||+.|
T Consensus 132 ~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 211 (278)
T 3cok_A 132 GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPP 211 (278)
T ss_dssp TEECSSCCGGGEEECTTCCEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCS
T ss_pred CeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 79999998531 01123489999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|........ + .. ....... .+......+.+++.+||+.||++|||+.++++
T Consensus 212 ~~~~~~~~~-~----~~--------~~~~~~~-------~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 212 FDTDTVKNT-L----NK--------VVLADYE-------MPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp SCCCSCC------------------CCSSCCC-------CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCChhHHHH-H----HH--------HhhcccC-------CccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 975322110 0 00 0000000 01122346789999999999999999999976
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-25 Score=225.59 Aligned_cols=193 Identities=24% Similarity=0.389 Sum_probs=149.4
Q ss_pred ccCchhhhhhccc-cccccceecccccccc-ccceeeccCCCCChHHhhhcCCC---------------ccCHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNY---------------FLDILERLNIM 509 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~---------------~l~~~~~~~i~ 509 (669)
+.+..|+..+..+ +|||++++++++...+ ..++||||+++|+|.+++..... .+++..+..++
T Consensus 75 ~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
T 2xir_A 75 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 154 (316)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHH
Confidence 3566789999988 7899999999987654 47899999999999999986432 27889999999
Q ss_pred HhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCcc
Q 040540 510 IDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 510 ~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.++++|+.|||.. +++|+|+|+.. ......||+.|+|||++.+..++.+
T Consensus 155 ~qi~~al~~lH~~----~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~ 230 (316)
T 2xir_A 155 FQVAKGMEFLASR----KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQ 230 (316)
T ss_dssp HHHHHHHHHHHHT----TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHhC----CcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccch
Confidence 9999999999954 79999999541 0112246788999999988889999
Q ss_pred ccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 563 CDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 563 ~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
+|||||||++|||+| |+.||....... .+...+........ +......+.+++.+||+.||
T Consensus 231 ~Di~slG~il~~l~t~g~~p~~~~~~~~-~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp 292 (316)
T 2xir_A 231 SDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCRRLKEGTRMRA-----------------PDYTTPEMYQTMLDCWHGEP 292 (316)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSTTCCCSH-HHHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSG
T ss_pred hHHHHHHHHHHHHHhCCCCCCcccchhH-HHHHHhccCccCCC-----------------CCCCCHHHHHHHHHHcCCCh
Confidence 999999999999999 999987643222 22222222211111 11123457899999999999
Q ss_pred CCCCCHHHHHHHHHHhHHHh
Q 040540 642 DKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 642 ~~Rps~~~v~~~l~~~~~~~ 661 (669)
.+|||+.|+++.|+.+.+..
T Consensus 293 ~~Rps~~ell~~L~~~~~~~ 312 (316)
T 2xir_A 293 SQRPTFSELVEHLGNLLQAN 312 (316)
T ss_dssp GGSCCHHHHHHHHHHHHHHH
T ss_pred hhCcCHHHHHHHHHHHHhhh
Confidence 99999999999999987653
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-25 Score=228.73 Aligned_cols=182 Identities=21% Similarity=0.252 Sum_probs=141.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. ...+++.....++.+++.||.|||..
T Consensus 60 ~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~LH~~---- 134 (384)
T 4fr4_A 60 RNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQ-NVHFKEETVKLFICELVMALDYLQNQ---- 134 (384)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3456799999999999999999999999999999999999999999985 44689999999999999999999954
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccC---CCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ......||+.|+|||++.. ..|+.++||||+||++|||+||+
T Consensus 135 givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~ 214 (384)
T 4fr4_A 135 RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGR 214 (384)
T ss_dssp TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSS
T ss_pred CceeccCcHHHeEECCCCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCC
Confidence 79999999531 1223469999999999864 35899999999999999999999
Q ss_pred CCCCcCCCCC-ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-HHHHH
Q 040540 580 RPTDEMFTGE-MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-MTDAA 651 (669)
Q Consensus 580 ~p~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-~~~v~ 651 (669)
.||....... ..+.......... .+......+.+++.+||+.||.+||+ ++++.
T Consensus 215 ~Pf~~~~~~~~~~~~~~~~~~~~~------------------~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~ 270 (384)
T 4fr4_A 215 RPYHIRSSTSSKEIVHTFETTVVT------------------YPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ 270 (384)
T ss_dssp CSSCCCTTSCHHHHHHHHHHCCCC------------------CCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred CCCCCCCCccHHHHHHHHhhcccC------------------CCCcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence 9997532221 1111111111100 01123356789999999999999998 66654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-27 Score=259.88 Aligned_cols=201 Identities=15% Similarity=0.074 Sum_probs=100.2
Q ss_pred CCCCCCEEeCCCCcCcccCCcccCCC--CCCCEEEccCCc-CCc-cCCccccCCcccccccccccCcccc----CCcccC
Q 040540 73 NLSFLVSLDISENNFHGHLPKELGQL--RRLRVMSLAYNK-LSG-SFPSWIGVLSKLRILRLDYNNFTGP----IPNSLF 144 (669)
Q Consensus 73 ~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~ 144 (669)
.+++|++|+|++|.+++..+..+... .+|++|+|++|. +.. .++....++++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56677777777776665555444442 336666666665 110 1222233566666666666666543 222344
Q ss_pred CCCCCCeeeccccccc----ccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC---CCCCccccC
Q 040540 145 NLSRLEMLRAEFNIIG----GTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS---GLIPPTIFN 217 (669)
Q Consensus 145 ~l~~L~~L~l~~n~l~----~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~---~~~p~~~~~ 217 (669)
++++|+.|++++|.++ +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 5666666666666665 2334444556666666666666653 4455555666666666542221 122233444
Q ss_pred CCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCC-ccccCCCCCCEEeCC
Q 040540 218 ISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIP-NSITNATKLIGLDLG 276 (669)
Q Consensus 218 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls 276 (669)
+++|+.++++++.. +.+|..+. .+++|++|++++|.+.+... ..+..+++|+.|+++
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccccCccccch-hHHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 44455555444322 12333222 34445555555444332211 123344444444444
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=231.64 Aligned_cols=200 Identities=11% Similarity=0.080 Sum_probs=150.0
Q ss_pred cCchhhhhhcccccccccee---------------cccccc-ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHH
Q 040540 448 SFDSECEVLRNVRHRNLIKI---------------ISSCSN-PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMI 510 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l---------------~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~ 510 (669)
.+..|+..+..++|+|++++ ++++.. ....++||||+ +++|.+++... ...+++.++..|+.
T Consensus 88 ~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~ 166 (352)
T 2jii_A 88 RLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVAC 166 (352)
T ss_dssp THHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHH
Confidence 56789999999999999984 444443 56779999999 89999999864 35689999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc----------------------------------cccccccccccCccccccC
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV----------------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~----------------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
|+++||+|||.. +++|||+|+.. ......||+.|+|||++.+
T Consensus 167 qi~~~L~~LH~~----~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 242 (352)
T 2jii_A 167 RLLDALEFLHEN----EYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKG 242 (352)
T ss_dssp HHHHHHHHHHHT----TCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTT
T ss_pred HHHHHHHHHHhC----CccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHcc
Confidence 999999999954 89999998430 0011258999999999998
Q ss_pred CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhc
Q 040540 557 GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDC 636 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c 636 (669)
..++.++|||||||++|||+||+.||.........+........ .......+.... +...+..+.+++.+|
T Consensus 243 ~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~l~~li~~~ 313 (352)
T 2jii_A 243 CGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFV-DKPGPFVGPCGH--------WIRPSETLQKYLKVV 313 (352)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHH-HSCCCEECTTSC--------EECCCHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhcc-CChhhhhhhccc--------cCCCcHHHHHHHHHH
Confidence 88999999999999999999999999764323322322222111 011111111000 112235678999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 637 CMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 637 ~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
|+.||++||++.+|++.|+++....
T Consensus 314 l~~dp~~Rps~~~l~~~L~~~~~~~ 338 (352)
T 2jii_A 314 MALTYEEKPPYAMLRNNLEALLQDL 338 (352)
T ss_dssp HTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HhCChhhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998765
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=220.32 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=149.7
Q ss_pred cCchhhhhhccccccccceecccc-ccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSC-SNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..++|++++..+..+ ......++||||+ +++|.+++......+++..+..++.++++|++|||..
T Consensus 50 ~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---- 124 (296)
T 4hgt_A 50 QLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---- 124 (296)
T ss_dssp CHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 466788999999998888877766 4466678999999 8999999986666799999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 527 PIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
+++|+|+|+... .....||+.|+|||+..+..++.++|||||||+
T Consensus 125 ~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i 204 (296)
T 4hgt_A 125 NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYV 204 (296)
T ss_dssp TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHH
Confidence 799999985310 012358999999999999889999999999999
Q ss_pred HHHHHhCCCCCCcCCCCC-ccH-HHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 572 LMETFTRKRPTDEMFTGE-MSL-RRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~-~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
+|||++|+.||....... ... ........+.. .. ......+..+.+++.+||+.||++||++.+
T Consensus 205 l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~--------~~------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ 270 (296)
T 4hgt_A 205 LMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP--------IE------VLCKGYPSEFATYLNFCRSLRFDDKPDYSY 270 (296)
T ss_dssp HHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC--------HH------HHTTTSCHHHHHHHHHHHTSCTTCCCCHHH
T ss_pred HHHHhcCCCCCcccchhhhhhhhhhhhcccccch--------hh------hhhccCCHHHHHHHHHHHhcCCCCCCCHHH
Confidence 999999999997643221 111 11111110000 00 001122456889999999999999999999
Q ss_pred HHHHHHHhHHHh
Q 040540 650 AAAKLKKIKVKF 661 (669)
Q Consensus 650 v~~~l~~~~~~~ 661 (669)
|++.|+++..+.
T Consensus 271 l~~~l~~~~~~~ 282 (296)
T 4hgt_A 271 LRQLFRNLFHRQ 282 (296)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=244.43 Aligned_cols=189 Identities=23% Similarity=0.387 Sum_probs=148.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.|..|+.++..++|+|+++++++|.. ...++|||||++|+|.++++.. +..+++.++..|+.++++||+|||.
T Consensus 307 ~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---- 381 (535)
T 2h8h_A 307 EAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---- 381 (535)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 457789999999999999999999876 6678999999999999999752 3458999999999999999999995
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+|+|||+|+.. ......++..|+|||++....++.++|||||||++|||+| |
T Consensus 382 ~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g 461 (535)
T 2h8h_A 382 MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG 461 (535)
T ss_dssp TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTT
T ss_pred CCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCC
Confidence 479999999531 0111235678999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||..... ..+...+...... +.+..+...+.+++.+||+.||++|||+.+|++.|+++.
T Consensus 462 ~~P~~~~~~--~~~~~~i~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 462 RVPYPGMVN--REVLDQVERGYRM-----------------PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 522 (535)
T ss_dssp CCSSTTCCH--HHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred CCCCCCCCH--HHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 999875321 1222222221110 111233456789999999999999999999999999875
Q ss_pred H
Q 040540 659 V 659 (669)
Q Consensus 659 ~ 659 (669)
.
T Consensus 523 ~ 523 (535)
T 2h8h_A 523 T 523 (535)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=206.23 Aligned_cols=202 Identities=25% Similarity=0.251 Sum_probs=134.0
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecc
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAE 155 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (669)
..+++++++|.++ .+|..+. ++|+.|++++|++.+..+..|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678888888887 4665554 578888888888887666778888888888888888876555556777777777777
Q ss_pred cccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcccc
Q 040540 156 FNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235 (669)
Q Consensus 156 ~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 235 (669)
+|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 170 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK--- 170 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc---
Confidence 77777666666677777777777777777666666677777777777777766554444555555555555555554
Q ss_pred chhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccc
Q 040540 236 PSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT 305 (669)
Q Consensus 236 p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 305 (669)
+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 171 ----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 171 ----------------------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----------------------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 333334444455555555555554444444555555555555555543
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-25 Score=226.09 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=130.4
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..+..+. |||++++++++......++||||+++|+|.+++... ..+++.++..|+.++++|++|||. .
T Consensus 51 ~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~----~ 125 (325)
T 3kn6_A 51 NTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKK-KHFSETEASYIMRKLVSAVSHMHD----V 125 (325)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred hHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 4456888888887 999999999999998999999999999999999864 568999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||++|
T Consensus 126 ~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g 205 (325)
T 3kn6_A 126 GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSG 205 (325)
T ss_dssp TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhC
Confidence 79999999531 01123478999999999988899999999999999999999
Q ss_pred CCCCCcCCCC--CccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTG--EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||...... .....+.......... ... .+.+...+..+.+++.+|+..||.+|||+.|+++
T Consensus 206 ~~pf~~~~~~~~~~~~~~~~~~i~~~~~------~~~-----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 206 QVPFQSHDRSLTCTSAVEIMKKIKKGDF------SFE-----GEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp SCTTC-------CCCHHHHHHHHTTTCC------CCC-----SHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred CCCCCCCccccccccHHHHHHHHHcCCC------CCC-----cccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 9999753321 1111222221111110 000 0113345567889999999999999999998863
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-25 Score=227.73 Aligned_cols=186 Identities=19% Similarity=0.239 Sum_probs=138.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+..++.++|||++++++++......++||||+++|+|.+++... ..+++.....++.++++||+|||. .+
T Consensus 62 ~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~ql~~~L~~LH~----~~ 136 (361)
T 3uc3_A 62 NVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNA-GRFSEDEARFFFQQLLSGVSYCHS----MQ 136 (361)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567899999999999999999999999999999999999999999753 458999999999999999999995 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCCcCcc-ccchhhHHHHHHHHhCCC
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAK-CDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~s~Gvil~el~tg~~ 580 (669)
|+|||+|+.. ......||+.|+|||++.+..+..+ +||||+||++|||++|+.
T Consensus 137 ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~ 216 (361)
T 3uc3_A 137 ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAY 216 (361)
T ss_dssp CCSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCC
Confidence 9999998531 0122358999999999988776655 899999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||...... ......+......... .+........+.+++.+||+.||.+|||+.|+++
T Consensus 217 Pf~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 217 PFEDPEEP-RDYRKTIQRILSVKYS-------------IPDDIRISPECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp SCC----C-CCHHHHHHHHHTTCCC-------------CCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred CCCCCccH-HHHHHHHHHHhcCCCC-------------CCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence 99764322 2222222221111100 0001112345789999999999999999999976
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-25 Score=224.83 Aligned_cols=198 Identities=15% Similarity=0.181 Sum_probs=143.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||++ |+|.+++...+..+++.....++.++++||+|||. .+
T Consensus 46 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~----~~ 120 (324)
T 3mtl_A 46 TAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHR----QK 120 (324)
T ss_dssp CCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred hHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45578999999999999999999999999999999998 69999998776778999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+||+.|
T Consensus 121 ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p 200 (324)
T 3mtl_A 121 VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPL 200 (324)
T ss_dssp EEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred ccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 9999999541 0112257999999998876 5689999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCC----CCccccccccc--------cchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLP----HRLSEVVDTNL--------VREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|..... ......+..... ..+........ ................+.+++.+|++.||++|||++|
T Consensus 201 f~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e 278 (324)
T 3mtl_A 201 FPGSTV--EEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAED 278 (324)
T ss_dssp CCCSSH--HHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred CCCCCH--HHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHH
Confidence 976321 122222222111 11111111000 0000000111233456789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 279 ~l~ 281 (324)
T 3mtl_A 279 AMK 281 (324)
T ss_dssp HTT
T ss_pred Hhc
Confidence 976
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-25 Score=222.82 Aligned_cols=180 Identities=19% Similarity=0.184 Sum_probs=142.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|||++++++++......++||||+++|+|.+++... ..+++.....++.+++.||+|||. .+
T Consensus 52 ~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~~ 126 (318)
T 1fot_A 52 HTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLHS----KD 126 (318)
T ss_dssp HHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred HHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4556888999999999999999999988999999999999999999854 458899999999999999999994 48
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
|+|||+|+.. ...+..||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 127 ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 206 (318)
T 1fot_A 127 IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS 206 (318)
T ss_dssp EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ccccCCChheEEEcCCCCEEEeecCcceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence 9999999541 112346999999999999888999999999999999999999999653
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
. .......+.... ... +......+.+++.+|++.||++|| +++|+++
T Consensus 207 ~--~~~~~~~i~~~~-~~~-----------------p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 207 N--TMKTYEKILNAE-LRF-----------------PPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp S--HHHHHHHHHHCC-CCC-----------------CTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred C--HHHHHHHHHhCC-CCC-----------------CCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 2 111111111110 000 112234578999999999999999 7888764
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=229.11 Aligned_cols=186 Identities=19% Similarity=0.238 Sum_probs=136.8
Q ss_pred Cchhhhhh-ccccccccceecccccc----ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 449 FDSECEVL-RNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 449 ~~~e~~~l-~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+..|+..+ +..+|+|++++++++.. ....++|||||++|+|.+++.... ..+++..+..|+.++++||+|||.
T Consensus 101 ~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~- 179 (400)
T 1nxk_A 101 ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS- 179 (400)
T ss_dssp HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 44567665 44589999999998754 566799999999999999998643 368999999999999999999995
Q ss_pred CCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 523 HSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.+|+|||+|+.. .....+||+.|+|||++.+..|+.++|||||||++|||
T Consensus 180 ---~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el 256 (400)
T 1nxk_A 180 ---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL 256 (400)
T ss_dssp ---TTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHH
T ss_pred ---CCccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHH
Confidence 479999998431 01223579999999999988999999999999999999
Q ss_pred HhCCCCCCcCCCCC--ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGE--MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++|+.||....... ..+...+...... . + .+.+......+.+++.+||+.||++|||+.|+++
T Consensus 257 l~g~~pf~~~~~~~~~~~~~~~i~~~~~~-~-----~--------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 257 LCGYPPFYSNHGLAISPGMKTRIRMGQYE-F-----P--------NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp HHSSCSCCCCTTCSSCCSHHHHHHHTCCC-C-----C--------TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HhCCCCCCCCccccccHHHHHHHHcCccc-C-----C--------CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 99999997643221 1122222221100 0 0 0012233456789999999999999999999986
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=219.85 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=149.3
Q ss_pred cCchhhhhhccccccccceeccccc-cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..++|++.+..+..+. .....++||||+ +++|.+++......+++..+..++.++++|++|||..
T Consensus 50 ~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---- 124 (296)
T 3uzp_A 50 QLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---- 124 (296)
T ss_dssp HHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 4667899999999988887776664 456678999999 8999999986566799999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 527 PIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
+++|+|+|+... .....||+.|+|||+..+..++.++|||||||+
T Consensus 125 ~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i 204 (296)
T 3uzp_A 125 NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYV 204 (296)
T ss_dssp TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHH
Confidence 799999984310 122358999999999999889999999999999
Q ss_pred HHHHHhCCCCCCcCCCC-CccHH-HHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 572 LMETFTRKRPTDEMFTG-EMSLR-RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~-~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
+|||+||+.||...... ..... .......+... .......+..+.+++.+||+.||++||++.+
T Consensus 205 l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ 270 (296)
T 3uzp_A 205 LMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI--------------EVLCKGYPSEFATYLNFCRSLRFDDKPDYSY 270 (296)
T ss_dssp HHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH--------------HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHH
T ss_pred HHHHHhCCCCCCCcCchhhhhhhhhhcccccCCch--------------HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHH
Confidence 99999999999764321 11111 11111110000 0001223456889999999999999999999
Q ss_pred HHHHHHHhHHHh
Q 040540 650 AAAKLKKIKVKF 661 (669)
Q Consensus 650 v~~~l~~~~~~~ 661 (669)
|++.|+++..+.
T Consensus 271 l~~~l~~~~~~~ 282 (296)
T 3uzp_A 271 LRQLFRNLFHRQ 282 (296)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999987764
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-24 Score=231.66 Aligned_cols=185 Identities=22% Similarity=0.235 Sum_probs=139.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++.+++|||++++++++... ..++||||+++|+|.+++.. ...+++.....++.|+++||+|||..
T Consensus 185 ~~~~~E~~~l~~l~hpniv~l~~~~~~~-~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---- 258 (419)
T 3i6u_A 185 LNVETEIEILKKLNHPCIIKIKNFFDAE-DYYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHEN---- 258 (419)
T ss_dssp CCHHHHHHHHHHCCCTTBCCCCEEEESS-EEEEEEECCTTCBGGGGTSS-SCCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecC-ceEEEEEcCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3567899999999999999999987644 46899999999999999975 35689999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccC---CCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gvil~el~ 576 (669)
+|+|||+|+.. ......||+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 259 ~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~ll 338 (419)
T 3i6u_A 259 GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL 338 (419)
T ss_dssp TCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHH
T ss_pred CccccCCChHhEEEecCCCcceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHH
Confidence 79999999531 0112358999999999853 56889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||+.||.... ....+...+......... ..+......+.+++.+|++.||++|||+.|+++
T Consensus 339 tg~~pf~~~~-~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 339 SGYPPFSEHR-TQVSLKDQITSGKYNFIP--------------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp HSSCSSCCCS-SSCCHHHHHHTTCCCCCH--------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HCCCCCCCCc-chHHHHHHHhcCCCCCCc--------------hhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 9999997632 222333333222111000 012234456889999999999999999999986
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=213.98 Aligned_cols=224 Identities=22% Similarity=0.227 Sum_probs=184.7
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccC
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 134 (669)
.+++..+.+.... .+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+ + ..++.+++|++|+|++|.
T Consensus 23 ~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 23 KANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC
T ss_pred HHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc
Confidence 4455555555443 35678899999999999873 3 358889999999999999986 3 478999999999999999
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCcc
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPT 214 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 214 (669)
+++..+..+.++++|++|++++|.+.+..+..++++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 99877778899999999999999999888888899999999999999999888878889999999999999999887777
Q ss_pred ccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCC
Q 040540 215 IFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292 (669)
Q Consensus 215 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 292 (669)
+..+++|++|++++|.+++..|..+. .+++|++|++++|.+.+. ++.|+.++++.|.+.|.+|..++.+.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFD-RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred hcCCccCCEEECCCCcCCccCHHHHh-CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 88899999999999998864444343 688899999998877644 44677888888888888888776554
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-25 Score=229.50 Aligned_cols=183 Identities=23% Similarity=0.244 Sum_probs=142.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||++ |++.+++......+++..+..++.++++||+|||..
T Consensus 99 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---- 173 (348)
T 1u5q_A 99 QDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---- 173 (348)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 456789999999999999999999998889999999998 789888876566799999999999999999999954
Q ss_pred CeeecCCCCcc---------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV---------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|+|+|+.. ......||+.|+|||++. ...++.++|||||||++|||+||+.||
T Consensus 174 ~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~ 253 (348)
T 1u5q_A 174 NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 253 (348)
T ss_dssp TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CeeeCCCCHHHEEECCCCCEEEeeccCceecCCCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 79999999541 112335899999999874 567899999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...... ..+........+. .. ....+..+.+++.+||+.||++|||+.++++
T Consensus 254 ~~~~~~-~~~~~~~~~~~~~---------~~--------~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 254 FNMNAM-SALYHIAQNESPA---------LQ--------SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp TTSCHH-HHHHHHHHSCCCC---------CC--------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCChH-HHHHHHHhcCCCC---------CC--------CCCCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 653211 1111111111110 00 0112345689999999999999999999975
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-25 Score=222.82 Aligned_cols=199 Identities=19% Similarity=0.186 Sum_probs=142.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++...+..++||||+++ +|.+++......+++.....++.|+++|++|||. .+
T Consensus 46 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~----~~ 120 (288)
T 1ob3_A 46 TTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHD----RR 120 (288)
T ss_dssp HHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred hHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 455799999999999999999999988899999999984 9999998765678999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+||+.|
T Consensus 121 i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p 200 (288)
T 1ob3_A 121 VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPL 200 (288)
T ss_dssp CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred eecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 9999999541 0112358999999999876 4589999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhC-C--CCcccc-----ccccccch--hhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESL-P--HRLSEV-----VDTNLVRE--EQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~-~--~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
|..... ...+....+..- + ..+... .++..... .+...........+.+++.+|++.||++|||+.|++
T Consensus 201 f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 279 (288)
T 1ob3_A 201 FPGVSE-ADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQAL 279 (288)
T ss_dssp CCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCCCH-HHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 976321 111222211110 0 000000 00000000 000000122345678999999999999999999987
Q ss_pred H
Q 040540 652 A 652 (669)
Q Consensus 652 ~ 652 (669)
+
T Consensus 280 ~ 280 (288)
T 1ob3_A 280 E 280 (288)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-25 Score=229.47 Aligned_cols=202 Identities=22% Similarity=0.344 Sum_probs=150.2
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|||++++++++... ...++||||+++|+|.+++... .+++..+..++.+++.|++|||..
T Consensus 78 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~i~~~l~~~l~~LH~~-- 153 (318)
T 3lxp_A 78 SGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRH--SIGLAQLLLFAQQICEGMAYLHAQ-- 153 (318)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGGGS--CCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEecccCCcHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 3567899999999999999999998763 5668999999999999999754 389999999999999999999954
Q ss_pred CCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||..|+|||++.+..++.++||||+||++|||+
T Consensus 154 --~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll 231 (318)
T 3lxp_A 154 --HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELL 231 (318)
T ss_dssp --TEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred --CccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 79999999531 011123677899999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccH-----HHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 577 TRKRPTDEMFTGEMSL-----RRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
||+.||.......... ...... ...+.+... .+.+.+..++..+.+++.+||+.||++|||+.|++
T Consensus 232 ~g~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell 302 (318)
T 3lxp_A 232 THCDSSQSPPTKFLELIGIAQGQMTVL----RLTELLERG-----ERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLI 302 (318)
T ss_dssp TTTCGGGSHHHHHHHHHCSCCHHHHHH----HHHHHHHTT-----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred hCCCcccccchhhhhhhcccccchhHH----HHHHHHhcc-----cCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 9999986421100000 000000 000000000 00111223445788999999999999999999999
Q ss_pred HHHHHhHHHhhh
Q 040540 652 AKLKKIKVKFLD 663 (669)
Q Consensus 652 ~~l~~~~~~~~~ 663 (669)
+.|+++.+++..
T Consensus 303 ~~L~~l~~~~~~ 314 (318)
T 3lxp_A 303 PILKTVHEKYQG 314 (318)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhhcc
Confidence 999999888754
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=225.65 Aligned_cols=191 Identities=22% Similarity=0.315 Sum_probs=147.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++.... .++||||+++|+|.+++......+++.....++.++++|+.|||..
T Consensus 66 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---- 140 (291)
T 1u46_A 66 DDFIREVNAMHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---- 140 (291)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSS-CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCcccEEEEEccCC-ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45678999999999999999999987655 7899999999999999987656789999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++.. ......||..|+|||+..+..++.++||||||+++|||++
T Consensus 141 ~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~ 220 (291)
T 1u46_A 141 RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY 220 (291)
T ss_dssp TEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred CcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhC
Confidence 79999999541 0011236778999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+..... . .+.+...+..+.+++.+||..||++|||+.++++.|+++
T Consensus 221 g~~p~~~~~~--~~~~~~~~~~~~-~---------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 282 (291)
T 1u46_A 221 GQEPWIGLNG--SQILHKIDKEGE-R---------------LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 282 (291)
T ss_dssp SCCTTTTCCH--HHHHHHHHTSCC-C---------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcccCCH--HHHHHHHHccCC-C---------------CCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHh
Confidence 9999865321 112221111100 0 001122345678999999999999999999999999988
Q ss_pred HHH
Q 040540 658 KVK 660 (669)
Q Consensus 658 ~~~ 660 (669)
.+.
T Consensus 283 ~~~ 285 (291)
T 1u46_A 283 QPT 285 (291)
T ss_dssp C--
T ss_pred Ccc
Confidence 654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=207.48 Aligned_cols=192 Identities=20% Similarity=0.235 Sum_probs=171.6
Q ss_pred CCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCC
Q 040540 37 PICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFP 116 (669)
Q Consensus 37 ~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 116 (669)
.+|.|.|..|.. ..+.++++++++. .+|..+. ++|+.|+|++|.+.+..+..|.++++|++|+|++|++.+..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 356888888953 3567999999997 5565554 689999999999999888899999999999999999998888
Q ss_pred ccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCC
Q 040540 117 SWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQN 196 (669)
Q Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~ 196 (669)
..|.++++|++|+|++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|+.+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88999999999999999999888888999999999999999999887778899999999999999999887778999999
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccc
Q 040540 197 LKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGR 234 (669)
Q Consensus 197 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (669)
|++|+|++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999988888889999999999999998764
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-24 Score=233.85 Aligned_cols=180 Identities=22% Similarity=0.276 Sum_probs=143.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.+++.++|||++++++++......++||||+++|+|.+++.. ...+++.....++.|+++|++|||. .+
T Consensus 62 ~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~----~g 136 (476)
T 2y94_A 62 KIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICK-NGRLDEKESRRLFQQILSGVDYCHR----HM 136 (476)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTTS-SSSCCHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 466799999999999999999999998999999999999999999975 3468999999999999999999994 48
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||
T Consensus 137 ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf 216 (476)
T 2y94_A 137 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPF 216 (476)
T ss_dssp EECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCcccccHHHEEEecCCCeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCC
Confidence 9999999531 1123468999999999988765 78999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... ...+...+...... .+......+.+++.+||+.||.+|||+.|+++
T Consensus 217 ~~~~--~~~~~~~i~~~~~~------------------~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 217 DDDH--VPTLFKKICDGIFY------------------TPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp CCSS--SHHHHHHHHTTCCC------------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCC--HHHHHHHHhcCCcC------------------CCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 7532 11122222111100 01112345789999999999999999999986
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=226.06 Aligned_cols=182 Identities=22% Similarity=0.241 Sum_probs=139.3
Q ss_pred ccCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|||++++++++.. ....++||||+++|+|.+++.. ..+++.+...++.++++||+|||..
T Consensus 81 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-- 156 (298)
T 2zv2_A 81 EQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLHYQ-- 156 (298)
T ss_dssp CHHHHHHHHHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC--
Confidence 457789999999999999999999876 5567899999999999987653 4689999999999999999999954
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCCC---cCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI---VSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||+.|+|||++.+.. ++.++|||||||++|||+
T Consensus 157 --~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~ 234 (298)
T 2zv2_A 157 --KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFV 234 (298)
T ss_dssp --TEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHH
T ss_pred --CeeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHH
Confidence 79999999531 012235899999999987654 478999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||.... ...+...+...... . + ........+.+++.+||+.||++|||+.|+++
T Consensus 235 ~g~~pf~~~~--~~~~~~~~~~~~~~-~-----~----------~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 235 FGQCPFMDER--IMCLHSKIKSQALE-F-----P----------DQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HSSCSSCCSS--HHHHHHHHHHCCCC-C-----C----------SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HCCCCCCCcc--HHHHHHHHhcccCC-C-----C----------CccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 9999986521 11111111111100 0 0 01122345789999999999999999999864
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-25 Score=227.08 Aligned_cols=197 Identities=24% Similarity=0.329 Sum_probs=147.8
Q ss_pred ccCchhhhhhccccccccceeccccc--cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS--NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|+|++++++++. .....++||||+++|+|.+++......+++..+..|+.++++|++|||.
T Consensus 69 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~--- 145 (327)
T 3lxl_A 69 RDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGS--- 145 (327)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 34678999999999999999999876 3456789999999999999998755678999999999999999999995
Q ss_pred CCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+
T Consensus 146 -~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll 224 (327)
T 3lxl_A 146 -RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELF 224 (327)
T ss_dssp -TTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred -CCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHH
Confidence 489999999541 011123777899999998888999999999999999999
Q ss_pred hCCCCCCcCCCC----------CccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 577 TRKRPTDEMFTG----------EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 577 tg~~p~~~~~~~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
+|+.||.....+ ........... ... .+.+.+...+..+.+++.+||+.||++|||
T Consensus 225 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~l~~li~~~l~~dP~~Rps 290 (327)
T 3lxl_A 225 TYCDKSCSPSAEFLRMMGCERDVPALSRLLELL---------EEG-----QRLPAPPACPAEVHELMKLCWAPSPQDRPS 290 (327)
T ss_dssp TTTCGGGSHHHHHHHHCC----CCHHHHHHHHH---------HTT-----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred hCCCCCccccchhhhhcccccccccHHHHHHHh---------hcc-----cCCCCCCcccHHHHHHHHHHcCCChhhCcC
Confidence 999998542110 00000000000 000 001112234566889999999999999999
Q ss_pred HHHHHHHHHHhHHHh
Q 040540 647 MTDAAAKLKKIKVKF 661 (669)
Q Consensus 647 ~~~v~~~l~~~~~~~ 661 (669)
+.|+++.|+++....
T Consensus 291 ~~ell~~L~~~~~~~ 305 (327)
T 3lxl_A 291 FSALGPQLDMLWSGS 305 (327)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999886554
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-25 Score=224.82 Aligned_cols=176 Identities=25% Similarity=0.280 Sum_probs=141.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCC-ChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNG-SLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g-~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..++|||++++++++......++||||+.+| +|.+++... ..+++..+..|+.++++||+|||..
T Consensus 74 ~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~--- 149 (335)
T 3dls_A 74 GKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRH-PRLDEPLASYIFRQLVSAVGYLRLK--- 149 (335)
T ss_dssp EEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 45677999999999999999999999999999999999777 999999753 4589999999999999999999954
Q ss_pred CCeeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|+|+|+.. ......||+.|+|||++.+..+ +.++|||||||++|||++|+.
T Consensus 150 -~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~ 228 (335)
T 3dls_A 150 -DIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEEN 228 (335)
T ss_dssp -TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSC
T ss_pred -CeEEeccCHHHEEEcCCCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCC
Confidence 79999999531 1122358999999999988776 889999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||...... ......+ +......+.+++.+||+.||++|||+.|+++-
T Consensus 229 pf~~~~~~---------------~~~~~~~-----------~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 229 PFCELEET---------------VEAAIHP-----------PYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp SCSSGGGG---------------TTTCCCC-----------SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred chhhHHHH---------------HhhccCC-----------CcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 99652110 0000000 11123457899999999999999999999873
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-25 Score=223.57 Aligned_cols=194 Identities=20% Similarity=0.260 Sum_probs=148.4
Q ss_pred ccCchhhhhhccccccccceeccccc----cccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS----NPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~----~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+.+..|+.++..++|||++++++++. .....++||||+++|+|.+++.. .+..+++..+..++.++++||+||
T Consensus 71 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~L 150 (317)
T 2buj_A 71 EEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAI 150 (317)
T ss_dssp HHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999886 34567899999999999999975 356789999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcccc----------------------------------cccccccccCccccccCCC---cCcc
Q 040540 520 RHGHSSAPIIHCEGEDSVTQ----------------------------------TTTMATIGYMAPEYGSEGI---VSAK 562 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~~~----------------------------------~~~~gt~~y~aPE~~~~~~---~~~~ 562 (669)
|.. +++|+|+++.... ....||+.|+|||++.... ++.+
T Consensus 151 H~~----~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 226 (317)
T 2buj_A 151 HAK----GYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDER 226 (317)
T ss_dssp HHT----TEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTH
T ss_pred HhC----CcccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCch
Confidence 954 7999999954100 0113589999999987543 6889
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
+|||||||++|||++|+.||.........+.......... +.....+..+.+++.+||+.||.
T Consensus 227 ~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~ 289 (317)
T 2buj_A 227 TDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSI-----------------PQSPRHSSALWQLLNSMMTVDPH 289 (317)
T ss_dssp HHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--C-----------------CCCTTSCHHHHHHHHHHTCSSGG
T ss_pred hhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCC-----------------CccccCCHHHHHHHHHHhhcChh
Confidence 9999999999999999999864322222222222211000 00112234678999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHh
Q 040540 643 KRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~~ 661 (669)
+||++.|+++.|+.+.+..
T Consensus 290 ~Rps~~~ll~~L~~~~~~~ 308 (317)
T 2buj_A 290 QRPHIPLLLSQLEALQPPA 308 (317)
T ss_dssp GSCCHHHHHHHHHHTCCCC
T ss_pred hCCCHHHHHHHhhhcCCCC
Confidence 9999999999999887543
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-24 Score=219.49 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=144.6
Q ss_pred cCchhhhhhccccccccceecccccc----------------ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHH
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN----------------PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMI 510 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~----------------~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~ 510 (669)
.+..|+..+..++|||++++++++.. ....++||||+++|+|.+++... ...+++..+..++.
T Consensus 50 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~ 129 (284)
T 2a19_B 50 KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFE 129 (284)
T ss_dssp GGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHH
Confidence 45678999999999999999988743 34478999999999999999753 35689999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccch
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
++++|+.|||.. +++|+|+++.. ......||+.|+|||+..+..++.++|||
T Consensus 130 qi~~~l~~lH~~----~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~ 205 (284)
T 2a19_B 130 QITKGVDYIHSK----KLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLY 205 (284)
T ss_dssp HHHHHHHHHHHT----TEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHH
T ss_pred HHHHHHHHHHhC----CeeeccCCHHHEEEcCCCCEEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhH
Confidence 999999999954 79999999531 11223589999999999888899999999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
||||++|||+||+.|+... ..+.......... ......+.+++.+||..||.+|||
T Consensus 206 slG~il~~l~~~~~~~~~~-------~~~~~~~~~~~~~-----------------~~~~~~~~~li~~~l~~dp~~Rps 261 (284)
T 2a19_B 206 ALGLILAELLHVCDTAFET-------SKFFTDLRDGIIS-----------------DIFDKKEKTLLQKLLSKKPEDRPN 261 (284)
T ss_dssp HHHHHHHHHHSCCSSHHHH-------HHHHHHHHTTCCC-----------------TTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred HHHHHHHHHHhcCCcchhH-------HHHHHHhhccccc-----------------ccCCHHHHHHHHHHccCChhhCcC
Confidence 9999999999999886431 1111111011010 011234678999999999999999
Q ss_pred HHHHHHHHHHhHHHhh
Q 040540 647 MTDAAAKLKKIKVKFL 662 (669)
Q Consensus 647 ~~~v~~~l~~~~~~~~ 662 (669)
+.|+++.|+.++....
T Consensus 262 ~~e~l~~l~~~~~~~~ 277 (284)
T 2a19_B 262 TSEILRTLTVWKKSPE 277 (284)
T ss_dssp HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999876643
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-25 Score=244.19 Aligned_cols=190 Identities=19% Similarity=0.315 Sum_probs=149.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++. .+..++||||+++|+|.+++...+..+++..+..++.++++||+|||..
T Consensus 436 ~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---- 510 (656)
T 2j0j_A 436 EKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESK---- 510 (656)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45667899999999999999999885 4567899999999999999987666799999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++ |+
T Consensus 511 givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~ 590 (656)
T 2j0j_A 511 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 590 (656)
T ss_dssp TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCC
Confidence 79999999541 0011235678999999988889999999999999999997 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... ...+...+....... .+..++..+.+++.+||..||++|||+.|+++.|+++.+
T Consensus 591 ~Pf~~~~--~~~~~~~i~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 591 KPFQGVK--NNDVIGRIENGERLP-----------------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp CTTTTCC--HHHHHHHHHHTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHcCCCCC-----------------CCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 9987532 112222222221110 011234567899999999999999999999999999865
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 652 ~ 652 (656)
T 2j0j_A 652 E 652 (656)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-25 Score=226.91 Aligned_cols=180 Identities=17% Similarity=0.105 Sum_probs=142.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|||++++++++......++||||+++|+|.+++.+. ..+++.....++.+++.||+|||. .+
T Consensus 87 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~~ 161 (350)
T 1rdq_E 87 HTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHS----LD 161 (350)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567889999999999999999999988999999999999999999854 358999999999999999999995 47
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 162 ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 241 (350)
T 1rdq_E 162 LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD 241 (350)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccccCccceEEECCCCCEEEcccccceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC
Confidence 9999999541 112346999999999999888999999999999999999999999753
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
. ...+...+..... .. +......+.+++.+||+.||.+||+ ++||++
T Consensus 242 ~--~~~~~~~i~~~~~-~~-----------------p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 242 Q--PIQIYEKIVSGKV-RF-----------------PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp S--HHHHHHHHHHCCC-CC-----------------CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred C--HHHHHHHHHcCCC-CC-----------------CCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 2 1112111111110 00 1122345789999999999999998 777754
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-25 Score=230.67 Aligned_cols=209 Identities=20% Similarity=0.194 Sum_probs=151.8
Q ss_pred cCchhhhhhccccccccceecccccccc--ccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+.++..++|||++++++++.... ..++||||+++|+|.+++.... ..+++..+..++.+++.||+|||..
T Consensus 53 ~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~- 131 (396)
T 4eut_A 53 VQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN- 131 (396)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence 4557899999999999999999887654 6689999999999999998632 2389999999999999999999954
Q ss_pred CCCCeeecCCCCccc----------------------------ccccccccccCccccccC--------CCcCccccchh
Q 040540 524 SSAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSE--------GIVSAKCDVYS 567 (669)
Q Consensus 524 ~~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~s 567 (669)
+|+|||+|+... .....||+.|+|||++.+ ..++.++||||
T Consensus 132 ---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwS 208 (396)
T 4eut_A 132 ---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS 208 (396)
T ss_dssp ---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred ---CEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHH
Confidence 799999995411 112348999999998764 45788999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCC--ccHHHHHHHhCCCCcccccccccc-------chhhhhhhhHHHHHHHHHHHhhccc
Q 040540 568 YGVLLMETFTRKRPTDEMFTGE--MSLRRWVKESLPHRLSEVVDTNLV-------REEQAFSAKMDCLLSIMDLALDCCM 638 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~c~~ 638 (669)
|||++|||+||+.||....... ..+..-+....+......+..... ...............+.+++.+||+
T Consensus 209 lG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~ 288 (396)
T 4eut_A 209 IGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILE 288 (396)
T ss_dssp HHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhc
Confidence 9999999999999996533222 112222222222211111100000 0000011235677788999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhHHH
Q 040540 639 ESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 639 ~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
.||++||++.|+++.++++..+
T Consensus 289 ~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 289 ADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp CCTTTSCCHHHHHHHHHHHHTC
T ss_pred cChhhhccHHHHHHHHHHHhhc
Confidence 9999999999999999887654
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=218.40 Aligned_cols=192 Identities=20% Similarity=0.332 Sum_probs=148.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+..++|||++++++++. .+..++||||+++++|.+++.... ..+++..+..++.++++|++|||.
T Consensus 53 ~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---- 127 (279)
T 1qpc_A 53 DAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---- 127 (279)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 35667999999999999999999876 445789999999999999997532 258999999999999999999995
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|+|+++.. ......|+..|+|||+..+..++.++||||||+++|||+| |
T Consensus 128 ~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g 207 (279)
T 1qpc_A 128 RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 207 (279)
T ss_dssp TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTT
T ss_pred CCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCC
Confidence 479999998531 0011235678999999988889999999999999999999 8
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+....... .+...+..+.+++.+|+..||++|||+.++++.|+++.
T Consensus 208 ~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 268 (279)
T 1qpc_A 208 RIPYPGMT--NPEVIQNLERGYRMV-----------------RPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF 268 (279)
T ss_dssp CCSSTTCC--HHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCcccC--HHHHHHHHhcccCCC-----------------CcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHH
Confidence 99986532 112222222211110 01122346789999999999999999999999999987
Q ss_pred HHhh
Q 040540 659 VKFL 662 (669)
Q Consensus 659 ~~~~ 662 (669)
....
T Consensus 269 ~~~~ 272 (279)
T 1qpc_A 269 TATE 272 (279)
T ss_dssp HHC-
T ss_pred Hhcc
Confidence 6643
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=208.16 Aligned_cols=201 Identities=23% Similarity=0.245 Sum_probs=98.1
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLE 150 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 150 (669)
+.++++++++++++|.++ .+|..+. +.++.|+|++|.+.+..|..|.++++|++|+|++|.+++..+. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 344555555555555554 2333332 3455555555555544455555555555555555555532221 4445555
Q ss_pred eeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCC
Q 040540 151 MLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQ 230 (669)
Q Consensus 151 ~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 230 (669)
+|++++|.+. .+|..+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555444 344445555555555555555554444555555555555555555554444444444555555555554
Q ss_pred CccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCC
Q 040540 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNS 279 (669)
Q Consensus 231 l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~ 279 (669)
++ .+|...+..+++|++|++++|++. .+|..+....+|+.+++++|.
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 44 333333333444555555544443 233333333444444444443
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=222.70 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=144.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++++|.+++.. ...+++..+..++.++++|++|||..
T Consensus 60 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~lH~~---- 134 (321)
T 2a2a_A 60 EEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHTK---- 134 (321)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CSCEEHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 3467899999999999999999999988899999999999999999975 35689999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++|||||||++|||+||
T Consensus 135 ~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g 214 (321)
T 2a2a_A 135 KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214 (321)
T ss_dssp TEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred CeecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHC
Confidence 79999998531 01122489999999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ......+...... . ++ ......+..+.+++.+|++.||++|||+.|+++
T Consensus 215 ~~pf~~~~~--~~~~~~i~~~~~~-~----~~---------~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 215 ASPFLGDTK--QETLANITSVSYD-F----DE---------EFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp CCSSCCSSH--HHHHHHHHTTCCC-C----CH---------HHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred CCCCCCCCH--HHHHHHHHhcccc-c----Ch---------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 999965321 1111111111000 0 00 001223456789999999999999999999986
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=217.14 Aligned_cols=184 Identities=17% Similarity=0.235 Sum_probs=144.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++......++||||+++++|.+++.. ...+++.....++.++++|++|||. .
T Consensus 50 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~----~ 124 (276)
T 2yex_A 50 ENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHG----I 124 (276)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 3456789999999999999999999888888999999999999999974 3468999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......||+.|+|||+..+..+ +.++||||||+++|||+||
T Consensus 125 ~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g 204 (276)
T 2yex_A 125 GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204 (276)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHS
T ss_pred CeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhC
Confidence 79999998531 0112358999999999987664 7899999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||.........+..|...... . +.+......+.+++.+|++.||++|||+.|+++
T Consensus 205 ~~p~~~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 205 ELPWDQPSDSCQEYSDWKEKKTY------L-----------NPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp SCCCSCSCTTSHHHHHHHTTCTT------S-----------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCCchHHHHHHHhhhcccc------c-----------CchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 99997644333333333221100 0 001123345789999999999999999999975
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=228.17 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=137.5
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ +|||++++++++......++||||+++|+|.+++... ..+++..+..++.+++.||+|||..
T Consensus 98 ~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~---- 172 (396)
T 4dc2_A 98 WVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHER---- 172 (396)
T ss_dssp HHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 355677777766 8999999999999999999999999999999999753 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. ...+.+||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 173 givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~P 252 (396)
T 4dc2_A 173 GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSP 252 (396)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CEEeccCCHHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCC
Confidence 79999999531 12234699999999999999999999999999999999999999
Q ss_pred CCcCCCCCc---cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEM---SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|........ ....++...+ ....+ ..+......+.+++.+||+.||.+||++
T Consensus 253 f~~~~~~~~~~~~~~~~~~~~i-------~~~~~-------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 253 FDIVGSSDNPDQNTEDYLFQVI-------LEKQI-------RIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp STTTTC------CCHHHHHHHH-------HHCCC-------CCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred CcccccccccchhhHHHHHHHH-------hcccc-------CCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 964321110 0011111000 00000 0011234567899999999999999996
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-24 Score=218.58 Aligned_cols=185 Identities=17% Similarity=0.227 Sum_probs=144.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++......++||||+++|+|.+++... ..+++.....++.++++|+.|||..
T Consensus 50 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---- 124 (284)
T 3kk8_A 50 QKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCHSN---- 124 (284)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667899999999999999999999888899999999999999998753 4589999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||+|+++|||++|+
T Consensus 125 ~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~ 204 (284)
T 3kk8_A 125 GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGY 204 (284)
T ss_dssp TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCC
Confidence 79999998531 011235899999999999888999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+........ . +........+.+++.+|++.||++|||+.|+++
T Consensus 205 ~pf~~~~--~~~~~~~~~~~~~~~~----~----------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 205 PPFWDED--QHRLYAQIKAGAYDYP----S----------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp CSSCCSS--HHHHHHHHHHTCCCCC----T----------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCc--hhHHHHHHHhccccCC----c----------hhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 9996532 1112222222111100 0 001223356789999999999999999999976
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-25 Score=234.72 Aligned_cols=182 Identities=20% Similarity=0.159 Sum_probs=138.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++|||++++++++...+..++|||||++|+|.+++... ..+++.....++.++++||+|||. ..
T Consensus 193 ~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~---~~ 268 (446)
T 4ejn_A 193 AHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALDYLHS---EK 268 (446)
T ss_dssp --------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHH---HT
T ss_pred HHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHhh---cC
Confidence 34567888999999999999999999988999999999999999999753 468999999999999999999995 14
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus 269 giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~P 348 (446)
T 4ejn_A 269 NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 348 (446)
T ss_dssp CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CEEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCC
Confidence 79999999531 11233589999999999988999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
|.... ...+...+..... .. +......+.+++.+||+.||.+|| +++|+++
T Consensus 349 f~~~~--~~~~~~~i~~~~~-~~-----------------p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 349 FYNQD--HEKLFELILMEEI-RF-----------------PRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp SCCSS--HHHHHHHHHHCCC-CC-----------------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred CCCCC--HHHHHHHHHhCCC-CC-----------------CccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 96532 1112222111100 00 112234578999999999999999 9999875
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=218.74 Aligned_cols=193 Identities=18% Similarity=0.221 Sum_probs=147.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++... ..+++..+..++.++++|++|||. .
T Consensus 53 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~----~ 127 (283)
T 3bhy_A 53 EEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEK-ESLTEDEATQFLKQILDGVHYLHS----K 127 (283)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEeecCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 35677999999999999999999999888899999999999999999753 458999999999999999999995 4
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++... .....||+.|+|||++.+..++.++||||||+++|||++|
T Consensus 128 ~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g 207 (283)
T 3bhy_A 128 RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 207 (283)
T ss_dssp TEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred CccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHC
Confidence 899999985310 0112478899999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH--HHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA--KLKK 656 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~ 656 (669)
+.||..... ......+..... . ... ......+..+.+++.+||+.||++||++.|+++ .++.
T Consensus 208 ~~p~~~~~~--~~~~~~~~~~~~-~--------~~~-----~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~ 271 (283)
T 3bhy_A 208 ASPFLGETK--QETLTNISAVNY-D--------FDE-----EYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKA 271 (283)
T ss_dssp SCTTCCSSH--HHHHHHHHTTCC-C--------CCH-----HHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHH
T ss_pred CCCCCCcch--HHHHHHhHhccc-C--------Ccc-----hhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHH
Confidence 999865321 111111111100 0 000 011223456789999999999999999999987 4666
Q ss_pred hHHH
Q 040540 657 IKVK 660 (669)
Q Consensus 657 ~~~~ 660 (669)
+...
T Consensus 272 ~~~~ 275 (283)
T 3bhy_A 272 IRRR 275 (283)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 5544
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-25 Score=224.10 Aligned_cols=193 Identities=16% Similarity=0.179 Sum_probs=145.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++...+..++||||+++++|.+++... ..+++..+..++.++++|++|||..
T Consensus 79 ~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 153 (309)
T 2h34_A 79 TRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQ-GPLAPPRAVAIVRQIGSALDAAHAA---- 153 (309)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 45667899999999999999999999888999999999999999999853 4589999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++||||||+++|||+||+.
T Consensus 154 ~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~ 233 (309)
T 2h34_A 154 GATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSP 233 (309)
T ss_dssp TCCCSCCCGGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSC
T ss_pred cCCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCC
Confidence 79999998531 0112358899999999998889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-CHHHHHHHHHHhHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-HMTDAAAKLKKIKV 659 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-s~~~v~~~l~~~~~ 659 (669)
||..... ..+...+....+. ... .+...+..+.+++.+||+.||++|| +++++++.|+++..
T Consensus 234 pf~~~~~--~~~~~~~~~~~~~--~~~-------------~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~ 296 (309)
T 2h34_A 234 PYQGDQL--SVMGAHINQAIPR--PST-------------VRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA 296 (309)
T ss_dssp SSCSCHH--HHHHHHHHSCCCC--GGG-------------TSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred CCCCchH--HHHHHHhccCCCC--ccc-------------cCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence 9975221 1111111111110 000 0122334578999999999999999 99999999998754
Q ss_pred Hh
Q 040540 660 KF 661 (669)
Q Consensus 660 ~~ 661 (669)
..
T Consensus 297 ~~ 298 (309)
T 2h34_A 297 TA 298 (309)
T ss_dssp --
T ss_pred hh
Confidence 43
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-25 Score=229.73 Aligned_cols=183 Identities=19% Similarity=0.278 Sum_probs=138.1
Q ss_pred ccCchhhhhhcccc--ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVR--HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++ |+|++++++++......++||| +.+++|.+++... ..+++.++..|+.++++||+|||.
T Consensus 99 ~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~--- 173 (390)
T 2zmd_A 99 DSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQ--- 173 (390)
T ss_dssp HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-cCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 45678999999986 5999999999998889999999 5678999999864 468888999999999999999994
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccC-----------CCcCccccchh
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE-----------GIVSAKCDVYS 567 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s 567 (669)
.+|+|||+|+.. .....+||+.|+|||++.+ ..++.++||||
T Consensus 174 -~~ivHrDlkp~NIll~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwS 252 (390)
T 2zmd_A 174 -HGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 252 (390)
T ss_dssp -TTCCCCCCCGGGEEESSSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHH
T ss_pred -CCeeecCCCHHHEEEECCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHH
Confidence 479999999541 0123359999999998764 36889999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|||++|||++|+.||...... ...+............ +......+.+++.+||+.||.+|||+
T Consensus 253 lGvil~ell~G~~Pf~~~~~~----~~~~~~~~~~~~~~~~-------------~~~~~~~~~~li~~~L~~dP~~Rps~ 315 (390)
T 2zmd_A 253 LGCILYYMTYGKTPFQQIINQ----ISKLHAIIDPNHEIEF-------------PDIPEKDLQDVLKCCLKRDPKQRISI 315 (390)
T ss_dssp HHHHHHHHHHSSCTTTTCCCH----HHHHHHHHCTTSCCCC-------------CCCSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHHHHHCCCcchhhhHH----HHHHHHHhCccccCCC-------------CccchHHHHHHHHHHcccChhhCCCH
Confidence 999999999999999653211 1111111111000000 01112457899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 316 ~ell~ 320 (390)
T 2zmd_A 316 PELLA 320 (390)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99975
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=219.82 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=142.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++ ++.+.+......+++.....++.++++|++|||.. +
T Consensus 47 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~----~ 121 (292)
T 3o0g_A 47 SALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR----N 121 (292)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC----C
Confidence 456789999999999999999999988899999999984 67777765566799999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCC-cCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|+|+|+.. ......||+.|+|||++.+.. ++.++||||+||++|||+||+.|
T Consensus 122 ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p 201 (292)
T 3o0g_A 122 VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP 201 (292)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCC
T ss_pred eecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCC
Confidence 9999999531 112235899999999987765 89999999999999999999988
Q ss_pred CCcCCCCCccHHHHHHHhCCC---Ccccccc-------ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPH---RLSEVVD-------TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
+.........+....+..... .+..... +..................+.+++.+|++.||++|||++|++
T Consensus 202 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 281 (292)
T 3o0g_A 202 LFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEAL 281 (292)
T ss_dssp SCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHh
Confidence 654222222222222211110 0000000 000000000001123445678999999999999999999997
Q ss_pred H
Q 040540 652 A 652 (669)
Q Consensus 652 ~ 652 (669)
+
T Consensus 282 ~ 282 (292)
T 3o0g_A 282 Q 282 (292)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-25 Score=233.06 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=143.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|..++..++|||+++++++|......++|||||++|+|.+++.+....+++.....++.+++.||+|||. .
T Consensus 119 ~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~----~ 194 (437)
T 4aw2_A 119 ACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQ----L 194 (437)
T ss_dssp CCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 346678899999999999999999999999999999999999999998755678999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCcccccc-----CCCcCccccchhhHHHHHHH
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~el 575 (669)
+|+|||+|+.. .....+||+.|||||++. ...|+.++|||||||++|||
T Consensus 195 giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~el 274 (437)
T 4aw2_A 195 HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEM 274 (437)
T ss_dssp TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHH
T ss_pred CeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHH
Confidence 79999999530 011246999999999986 45689999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC--CCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK--RMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~--Rps~~~v~~ 652 (669)
+||+.||....... .+...+........ +.. .......+.+++.+|++.+|++ ||+++|+++
T Consensus 275 ltG~~Pf~~~~~~~-~~~~i~~~~~~~~~-----p~~---------~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 275 LYGETPFYAESLVE-TYGKIMNHKERFQF-----PTQ---------VTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp HHSSCTTCCSSHHH-HHHHHHTHHHHCCC-----CSS---------CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred HhCCCCCCCCChhH-HHHhhhhccccccC-----Ccc---------cccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 99999997532111 11111110000000 000 0112346789999999988888 999999875
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-24 Score=217.41 Aligned_cols=180 Identities=19% Similarity=0.268 Sum_probs=141.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++|+|.+++... ..+++..+..++.+++.|++|||. .+
T Consensus 55 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~qi~~~l~~LH~----~~ 129 (279)
T 3fdn_A 55 QLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANALSYCHS----KR 129 (279)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred HHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4567899999999999999999999888899999999999999999753 458999999999999999999994 48
Q ss_pred eeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 528 IIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
++|+|+++.. ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||..
T Consensus 130 i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~ 209 (279)
T 3fdn_A 130 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA 209 (279)
T ss_dssp CEECCCCGGGEEECTTSCEEECSCCEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCC
T ss_pred EecccCChHhEEEcCCCCEEEEeccccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCC
Confidence 9999999541 11223589999999999888899999999999999999999999875
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
... ......+.... ... +......+.+++.+||+.||.+|||+.|+++
T Consensus 210 ~~~--~~~~~~~~~~~-~~~-----------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 210 NTY--QETYKRISRVE-FTF-----------------PDFVTEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp SSH--HHHHHHHHHTC-CCC-----------------CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred CcH--HHHHHHHHhCC-CCC-----------------CCcCCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 321 11111111110 000 1112345689999999999999999999986
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=217.85 Aligned_cols=184 Identities=19% Similarity=0.232 Sum_probs=142.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++++|.+++... ..+++.....++.++++|++|||..
T Consensus 51 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~---- 125 (277)
T 3f3z_A 51 DRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHK-RVFRESDAARIMKDVLSAVAYCHKL---- 125 (277)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35667999999999999999999999988899999999999999998753 4589999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++.. ......||+.|+|||++.+. ++.++||||+|+++|||+||+
T Consensus 126 ~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~ 204 (277)
T 3f3z_A 126 NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGY 204 (277)
T ss_dssp TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSS
T ss_pred CccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCC
Confidence 79999998531 01123589999999988654 899999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||..... ......+...... ... ......+..+.+++.+|++.||++|||+.|+++
T Consensus 205 ~p~~~~~~--~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 205 PPFSAPTD--SEVMLKIREGTFT---------FPE-----KDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp CSSCCSSH--HHHHHHHHHCCCC---------CCH-----HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCCCCH--HHHHHHHHhCCCC---------CCc-----hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99975321 1121111111100 000 001133456789999999999999999999975
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-25 Score=223.06 Aligned_cols=185 Identities=19% Similarity=0.261 Sum_probs=141.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++......+++..+..++.++++|+.|||..
T Consensus 61 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---- 136 (302)
T 2j7t_A 61 EDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---- 136 (302)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcC----
Confidence 4566789999999999999999999988899999999999999999986556789999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccc-----cCCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYG-----SEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||++ ....++.++|||||||++|||+
T Consensus 137 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~ 216 (302)
T 2j7t_A 137 RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA 216 (302)
T ss_dssp TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHH
T ss_pred CcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHh
Confidence 79999999541 01123589999999987 3566889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||...... ..+........+. .. .+...+..+.+++.+||..||++|||+.|+++
T Consensus 217 ~g~~p~~~~~~~-~~~~~~~~~~~~~---------~~-------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 217 QIEPPHHELNPM-RVLLKIAKSDPPT---------LL-------TPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HSSCTTTTSCHH-HHHHHHHHSCCCC---------CS-------SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred cCCCCCccCCHH-HHHHHHhccCCcc---------cC-------CccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 999998753211 1111111111110 00 01122345789999999999999999999986
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-25 Score=227.47 Aligned_cols=175 Identities=21% Similarity=0.180 Sum_probs=135.6
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ .|||++++++++......++||||+++|+|.+++... ..+++.....++.+++.||+|||..
T Consensus 69 ~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---- 143 (353)
T 3txo_A 69 CTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS-RRFDEARARFYAAEIISALMFLHDK---- 143 (353)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 345677778776 6999999999999999999999999999999999754 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. .....+||+.|+|||++.+..|+.++||||+||++|||++|+.|
T Consensus 144 givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~P 223 (353)
T 3txo_A 144 GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAP 223 (353)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCC
Confidence 79999999541 11233599999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|.... ...+...+...... . +......+.+++.+|++.||.+||++
T Consensus 224 f~~~~--~~~~~~~i~~~~~~-~-----------------p~~~~~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 224 FEAEN--EDDLFEAILNDEVV-Y-----------------PTWLHEDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp SCCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred CCCCC--HHHHHHHHHcCCCC-C-----------------CCCCCHHHHHHHHHHhhhCHHHccCC
Confidence 97532 11122211111000 0 11123457899999999999999998
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-25 Score=226.44 Aligned_cols=183 Identities=20% Similarity=0.301 Sum_probs=137.6
Q ss_pred ccCchhhhhhccccc--cccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRH--RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+.++..++| +|++++++++......++||| +.+|+|.+++... ..+++.++..|+.++++||+|||..
T Consensus 52 ~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH~~-- 127 (343)
T 3dbq_A 52 DSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQH-- 127 (343)
T ss_dssp HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe-CCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 456779999999976 999999999999999999999 4578999999864 4689999999999999999999954
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccC-----------CCcCccccchh
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE-----------GIVSAKCDVYS 567 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s 567 (669)
+|+|||+|+.. ......||+.|+|||++.+ ..++.++||||
T Consensus 128 --~iiHrDikp~NIll~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Diws 205 (343)
T 3dbq_A 128 --GIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 205 (343)
T ss_dssp --TCCCCCCCGGGEEEETTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHH
T ss_pred --CeecCCCCcceEEEECCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHH
Confidence 79999999541 0113359999999998754 56889999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|||++|||++|+.||.........+...+........ +......+.+++.+||+.||.+|||+
T Consensus 206 lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~L~~dp~~Rpt~ 268 (343)
T 3dbq_A 206 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEF-----------------PDIPEKDLQDVLKCCLKRDPKQRISI 268 (343)
T ss_dssp HHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCC-----------------CCCSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCC-----------------cccCCHHHHHHHHHHcCCChhHCCCH
Confidence 9999999999999997532211111111110000000 11112356899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 269 ~e~l~ 273 (343)
T 3dbq_A 269 PELLA 273 (343)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99975
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-24 Score=221.77 Aligned_cols=191 Identities=21% Similarity=0.247 Sum_probs=136.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc-------CCCccCHHHHHHHHHhHHhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-------HNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~-------~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+.+..|+..+..++|||++++++++...+..++||||+++|+|.+++.. ....+++..+..++.++++|+.||
T Consensus 58 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~l 137 (303)
T 2vwi_A 58 DELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYL 137 (303)
T ss_dssp --------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999999999988899999999999999999974 234589999999999999999999
Q ss_pred hcCCCCCCeeecCCCCccc------------------------------ccccccccccCccccccC-CCcCccccchhh
Q 040540 520 RHGHSSAPIIHCEGEDSVT------------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSY 568 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~~------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~ 568 (669)
|.. +++|+|+++... .....||+.|+|||+..+ ..++.++|||||
T Consensus 138 H~~----~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~sl 213 (303)
T 2vwi_A 138 HKN----GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSF 213 (303)
T ss_dssp HHT----TCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHH
T ss_pred HhC----CCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHH
Confidence 954 799999985310 012258999999998865 568999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccc-cccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSE-VVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||++|||+||+.||...... ..........+..... ..++.. .......+.+++.+||+.||++||++
T Consensus 214 G~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~li~~~l~~dp~~Rps~ 282 (303)
T 2vwi_A 214 GITAIELATGAAPYHKYPPM--KVLMLTLQNDPPSLETGVQDKEM---------LKKYGKSFRKMISLCLQKDPEKRPTA 282 (303)
T ss_dssp HHHHHHHHHSSCTTTTSCGG--GHHHHHHTSSCCCTTC-----CC---------CCCCCHHHHHHHHHHCCSSGGGSCCH
T ss_pred HHHHHHHHhCCCCCccCchh--hHHHHHhccCCCccccccccchh---------hhhhhHHHHHHHHHHccCChhhCcCH
Confidence 99999999999999763221 1111111111111111 111111 11223457899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 283 ~~ll~ 287 (303)
T 2vwi_A 283 AELLR 287 (303)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99986
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-25 Score=226.46 Aligned_cols=178 Identities=21% Similarity=0.210 Sum_probs=139.3
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|..++..+ +|||++++++++......++||||+++|+|.+++... ..+++..+..++.+++.||+|||.. +
T Consensus 64 ~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~----~ 138 (345)
T 1xjd_A 64 TMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC-HKFDLSRATFYAAEIILGLQFLHSK----G 138 (345)
T ss_dssp HHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 44577777766 8999999999999999999999999999999999753 4589999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.||
T Consensus 139 ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf 218 (345)
T 1xjd_A 139 IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF 218 (345)
T ss_dssp CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCC
Confidence 9999999530 112336899999999999888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH-HHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT-DAA 651 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~-~v~ 651 (669)
.... ...+...+....+. . +......+.+++.+|++.||++||++. |+.
T Consensus 219 ~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 219 HGQD--EEELFHSIRMDNPF-Y-----------------PRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp CCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred CCCC--HHHHHHHHHhCCCC-C-----------------CcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 7532 11122222111110 0 111234578999999999999999987 554
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-24 Score=222.59 Aligned_cols=180 Identities=19% Similarity=0.161 Sum_probs=138.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++...+..++||||+++|+|.+++... ..+++.....++.+++.||+|||.. +
T Consensus 67 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH~~----~ 141 (327)
T 3a62_A 67 HTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE-GIFMEDTACFYLAEISMALGHLHQK----G 141 (327)
T ss_dssp ----HHHHHHHCCCTTBCCEEEEEECSSCEEEEEECCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEeCCCCCcHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhC----C
Confidence 4567899999999999999999999999999999999999999999753 4578889999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 142 ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf 221 (327)
T 3a62_A 142 IIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPF 221 (327)
T ss_dssp CCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred EEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCC
Confidence 9999999541 011235899999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
..... ......+...... . +......+.+++.+||+.||++|| ++.|+++
T Consensus 222 ~~~~~--~~~~~~i~~~~~~-~-----------------p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 222 TGENR--KKTIDKILKCKLN-L-----------------PPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp CCSSH--HHHHHHHHHTCCC-C-----------------CTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred CCCCH--HHHHHHHHhCCCC-C-----------------CCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 75321 1111111111000 0 112234578999999999999999 6667654
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-25 Score=231.94 Aligned_cols=183 Identities=16% Similarity=0.181 Sum_probs=141.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|||++++++++......++|||||++|+|.++++.. .+++.....++.+++.||+|||. .+
T Consensus 115 ~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~LH~----~g 188 (410)
T 3v8s_A 115 FFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIHS----MG 188 (410)
T ss_dssp THHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567899999999999999999999999999999999999999999753 47888899999999999999995 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCC----cCccccchhhHHHHHHHHh
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGI----VSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~s~Gvil~el~t 577 (669)
|+|||+|+.. ...+.+||+.|+|||++.+.. |+.++|||||||++|||+|
T Consensus 189 ivHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~ 268 (410)
T 3v8s_A 189 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV 268 (410)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHH
T ss_pred eEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHh
Confidence 9999999530 112346999999999987654 8899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC--CCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK--RMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~--Rps~~~v~~ 652 (669)
|+.||...... ......+..... ..++.....+..+.+++.+|+..+|.+ ||+++||++
T Consensus 269 G~~Pf~~~~~~-~~~~~i~~~~~~---------------~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 269 GDTPFYADSLV-GTYSKIMNHKNS---------------LTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp SSCTTCCSSHH-HHHHHHHTHHHH---------------CCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred CCCCCCCCChh-hHHHHHHhcccc---------------ccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 99999753211 011111110000 001111123456789999999999988 999999875
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-24 Score=221.97 Aligned_cols=199 Identities=20% Similarity=0.226 Sum_probs=142.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-----CCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-----NYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-----~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+.++..++|||++++++++...+..++||||++ |+|.+++... ...+++..+..++.|+++||+|||.
T Consensus 49 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~- 126 (317)
T 2pmi_A 49 TAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE- 126 (317)
T ss_dssp HHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 45679999999999999999999999889999999998 6999998642 1358889999999999999999995
Q ss_pred CCCCCeeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHH
Q 040540 523 HSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+|+|||+|+.. ......||+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 127 ---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~ 203 (317)
T 2pmi_A 127 ---NKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMI 203 (317)
T ss_dssp ---TTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHH
T ss_pred ---CCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHH
Confidence 489999999531 0122358999999999876 45899999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHh-CC-CC-cccc-----ccccccc-------hhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKES-LP-HR-LSEV-----VDTNLVR-------EEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~-~~-~~-~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
||+.||...... ..+....... .+ .. +... ..+.+.. .......+......+.+++.+|++.||
T Consensus 204 ~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP 282 (317)
T 2pmi_A 204 TGKPLFPGTNDE-EQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNP 282 (317)
T ss_dssp HSSCSCCCSSHH-HHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSG
T ss_pred hCCCCCCCCChH-HHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCc
Confidence 999999753211 1111111111 01 00 0000 0000000 000000011234568899999999999
Q ss_pred CCCCCHHHHHH
Q 040540 642 DKRMHMTDAAA 652 (669)
Q Consensus 642 ~~Rps~~~v~~ 652 (669)
++|||+.|+++
T Consensus 283 ~~Rpt~~e~l~ 293 (317)
T 2pmi_A 283 DMRLSAKQALH 293 (317)
T ss_dssp GGSCCHHHHTT
T ss_pred ccCCCHHHHhC
Confidence 99999999875
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=234.02 Aligned_cols=183 Identities=21% Similarity=0.237 Sum_probs=143.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||+++++++|......++||||+++|+|.+++... ..+++..+..|+.++++||+|||.. +
T Consensus 82 ~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~----~ 156 (494)
T 3lij_A 82 KLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR-MKFNEVDAAVIIKQVLSGVTYLHKH----N 156 (494)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567999999999999999999999999999999999999999998753 4589999999999999999999954 7
Q ss_pred eeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 528 IIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 528 i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
|+|||+|+.. ......||+.|+|||++. ..|+.++||||+||++|||++|+.
T Consensus 157 ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~ 235 (494)
T 3lij_A 157 IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYP 235 (494)
T ss_dssp EECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred ceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCC
Confidence 9999999531 112235899999999876 468999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... ...+...+...... .. .+.+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 236 pf~~~~--~~~~~~~i~~~~~~-~~-------------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 236 PFGGQT--DQEILRKVEKGKYT-FD-------------SPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp SSCCSS--HHHHHHHHHHTCCC-CC-------------SGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCC--HHHHHHHHHhCCCC-CC-------------chhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 997532 11222222221110 00 0112233456789999999999999999999985
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-24 Score=219.17 Aligned_cols=184 Identities=23% Similarity=0.252 Sum_probs=140.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. .+..+++..+..|+.++++||+|||..
T Consensus 65 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~- 143 (285)
T 3is5_A 65 EQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ- 143 (285)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence 4566799999999999999999999988889999999999999999864 235689999999999999999999954
Q ss_pred CCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 524 SSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 524 ~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||++. ..++.++||||+||++|||+
T Consensus 144 ---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll 219 (285)
T 3is5_A 144 ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLL 219 (285)
T ss_dssp ---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHH
T ss_pred ---CEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHH
Confidence 79999998531 011234889999999875 45889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||..... ..+........+... .. .......+.+++.+|++.||++|||+.||++
T Consensus 220 ~g~~pf~~~~~--~~~~~~~~~~~~~~~---------~~------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 220 TGCLPFTGTSL--EEVQQKATYKEPNYA---------VE------CRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HSSCSSCCSSH--HHHHHHHHHCCCCCC---------C--------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred hCCCCCCCCCH--HHHHhhhccCCcccc---------cc------cCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99999975321 112221111111100 00 0012345679999999999999999999975
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-24 Score=220.62 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=133.5
Q ss_pred hhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 451 SECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 451 ~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
.|...+... +|+|+++++++|......++||||+ +++|.+++...+..+++..+..|+.+++.||+|||.. +|+
T Consensus 105 ~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~----~iv 179 (311)
T 3p1a_A 105 AEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ----GLV 179 (311)
T ss_dssp HHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT----TEE
T ss_pred HHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC----CEe
Confidence 344444444 8999999999999999999999999 5799999987666799999999999999999999954 799
Q ss_pred ecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 530 HCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 530 h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
|+|+|+.. ......||+.|+|||++.+ .++.++|||||||++|||++|..|+...
T Consensus 180 H~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~ 258 (311)
T 3p1a_A 180 HLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG 258 (311)
T ss_dssp CCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH
T ss_pred cCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 99999541 1112348999999998876 6899999999999999999997765431
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
. .|.. ..... ..+ ..+......+.+++.+|++.||++|||+.|+++
T Consensus 259 ----~---~~~~-~~~~~----~~~---------~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 259 ----E---GWQQ-LRQGY----LPP---------EFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp ----H---HHHH-HTTTC----CCH---------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ----c---HHHH-HhccC----CCc---------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 0 1110 00000 000 012234456889999999999999999999975
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-25 Score=225.67 Aligned_cols=190 Identities=18% Similarity=0.272 Sum_probs=140.0
Q ss_pred cCchhhhhhccccccccceecccccccccc----ceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFK----ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~----~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+..+..++|||++++++++...... ++||||+++|+|.+++... ..+++.+...++.++++||+|||..
T Consensus 58 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~- 135 (311)
T 3ork_A 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALNFSHQN- 135 (311)
T ss_dssp HHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence 466789999999999999999988765544 8999999999999999753 4589999999999999999999954
Q ss_pred CCCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 524 SSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 524 ~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||
T Consensus 136 ---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~l 212 (311)
T 3ork_A 136 ---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEV 212 (311)
T ss_dssp ---TCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred ---CCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHH
Confidence 79999999531 00112489999999999988899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH-HHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA-AAKL 654 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v-~~~l 654 (669)
+||+.||....... ............ + .......+..+.+++.+||+.||++||++.++ ...+
T Consensus 213 l~g~~pf~~~~~~~-~~~~~~~~~~~~-------~--------~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l 276 (311)
T 3ork_A 213 LTGEPPFTGDSPVS-VAYQHVREDPIP-------P--------SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADL 276 (311)
T ss_dssp HHSSCSCCCSSHHH-HHHHHHHCCCCC-------H--------HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHH
T ss_pred HhCCCCCCCCChHH-HHHHHhcCCCCC-------c--------ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHH
Confidence 99999996532111 011111110000 0 00112234567899999999999999965554 4555
Q ss_pred HHhH
Q 040540 655 KKIK 658 (669)
Q Consensus 655 ~~~~ 658 (669)
.++.
T Consensus 277 ~~~~ 280 (311)
T 3ork_A 277 VRVH 280 (311)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-24 Score=218.27 Aligned_cols=185 Identities=21% Similarity=0.340 Sum_probs=139.4
Q ss_pred ccCchhhhhhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+.+..|+.++..++|||++++++++.. ....++||||+++|+|.+++... ..+++.....++.++++|+.|||..
T Consensus 70 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~ 148 (290)
T 1t4h_A 70 QRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTR 148 (290)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 346679999999999999999998754 45578999999999999999753 4588999999999999999999954
Q ss_pred CCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 523 HSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.++++|+|+++.. ......||+.|+|||++.+ .++.++||||+||++|||+||
T Consensus 149 --~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g 225 (290)
T 1t4h_A 149 --TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATS 225 (290)
T ss_dssp --SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHS
T ss_pred --CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhC
Confidence 2349999998541 0112348999999998764 589999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ................. +......+.+++.+||+.||.+|||+.|+++
T Consensus 226 ~~pf~~~~~----~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 226 EYPYSECQN----AAQIYRRVTSGVKPASF-------------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp SCTTTTCSS----HHHHHHHHTTTCCCGGG-------------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCCcCc----HHHHHHHHhccCCcccc-------------CCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 999965321 11121111111000000 1122345789999999999999999999975
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-24 Score=233.00 Aligned_cols=183 Identities=20% Similarity=0.221 Sum_probs=143.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.+.+... ..+++.....|+.++++|+.|||.. +
T Consensus 67 ~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~----~ 141 (486)
T 3mwu_A 67 TILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHKH----N 141 (486)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567999999999999999999999999999999999999999998754 4589999999999999999999954 7
Q ss_pred eeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 528 IIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 528 i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
|+|||+|+.. .....+||+.|+|||++.+ .|+.++||||+||++|||++|+.
T Consensus 142 ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~ 220 (486)
T 3mwu_A 142 IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTP 220 (486)
T ss_dssp CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSC
T ss_pred eEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCC
Confidence 9999998531 0112358999999999875 58999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... ...+...+....... ..+.+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 221 pf~~~~--~~~~~~~i~~~~~~~--------------~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 221 PFYGKN--EYDILKRVETGKYAF--------------DLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp SSCCSS--HHHHHHHHHHTCCCS--------------CSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CCCCCC--HHHHHHHHHhCCCCC--------------CCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 996532 112222222211000 00112334556789999999999999999999986
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-24 Score=224.84 Aligned_cols=186 Identities=22% Similarity=0.236 Sum_probs=139.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC------------------------------
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH------------------------------ 496 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~------------------------------ 496 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++...
T Consensus 73 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (345)
T 3hko_A 73 ERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAING 152 (345)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhccccccccccccccccccccccccccccc
Confidence 45677999999999999999999999999999999999999999998520
Q ss_pred ---------CCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc------------------------------
Q 040540 497 ---------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV------------------------------ 537 (669)
Q Consensus 497 ---------~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~------------------------------ 537 (669)
...+++.....|+.++++|++|||.. +++|+|+|+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~----~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~ 228 (345)
T 3hko_A 153 SIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ----GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEY 228 (345)
T ss_dssp CC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHT----TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHHHHC----CccccCCChhhEEEecCCCceEEEeeccccccccccCcccc
Confidence 11234566778999999999999954 79999998531
Q ss_pred -cccccccccccCccccccC--CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccc
Q 040540 538 -TQTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVR 614 (669)
Q Consensus 538 -~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 614 (669)
......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ..+.......... .
T Consensus 229 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~--~--------- 296 (345)
T 3hko_A 229 YGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDA-DTISQVLNKKLCF--E--------- 296 (345)
T ss_dssp ------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCCCT--T---------
T ss_pred ccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChH-HHHHHHHhccccc--C---------
Confidence 0112358999999999865 66899999999999999999999999753211 1111111111100 0
Q ss_pred hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 615 EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 615 ~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.+........+.+++.+||+.||.+||++.|+++
T Consensus 297 ----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 297 ----NPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp ----SGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred ----CcccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0011223456789999999999999999999976
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-24 Score=219.79 Aligned_cols=185 Identities=21% Similarity=0.222 Sum_probs=145.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++|+|.+++......+++.....++.++++|+.|||..
T Consensus 69 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---- 144 (314)
T 3com_A 69 QEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM---- 144 (314)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 3566789999999999999999999888888999999999999999975556789999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++||||||+++|||++|+.|
T Consensus 145 ~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 224 (314)
T 3com_A 145 RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPP 224 (314)
T ss_dssp TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCT
T ss_pred CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCC
Confidence 79999998531 01223589999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..... ...........+... . .+......+.+++.+||..||.+|||+.++++
T Consensus 225 ~~~~~~--~~~~~~~~~~~~~~~--------~-------~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 225 YADIHP--MRAIFMIPTNPPPTF--------R-------KPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp TTTSCH--HHHHHHHHHSCCCCC--------S-------SGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCCCh--HHHHHHHhcCCCccc--------C-------CcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 875321 111111111111110 0 01122346789999999999999999999976
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-24 Score=234.85 Aligned_cols=184 Identities=22% Similarity=0.262 Sum_probs=145.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++|||++++++++......++||||+.+|+|.+++... ..+++..+..|+.++++|+.|||..
T Consensus 71 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 145 (484)
T 3nyv_A 71 ESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR-KRFSEVDAARIIRQVLSGITYMHKN---- 145 (484)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC-SCCBHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35668999999999999999999999999999999999999999999754 4589999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+... .....||+.|+|||++.+ .++.++||||+||++|||++|+
T Consensus 146 ~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~ 224 (484)
T 3nyv_A 146 KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGC 224 (484)
T ss_dssp TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSS
T ss_pred CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCC
Confidence 799999995410 112258999999998865 6899999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+....... ..+.+...+..+.+++.+|++.||.+|||+.|+++
T Consensus 225 ~pf~~~~--~~~~~~~i~~~~~~~--------------~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 225 PPFNGAN--EYDILKKVEKGKYTF--------------ELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp CSSCCSS--HHHHHHHHHHCCCCC--------------CSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCCC--HHHHHHHHHcCCCCC--------------CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 9997532 222222222211100 00112334566889999999999999999999975
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-24 Score=223.77 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=137.2
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ +|||++++++++......++||||+++|+|.+++... ..+++.....++.+++.||+|||. .
T Consensus 55 ~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~----~ 129 (345)
T 3a8x_A 55 WVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHE----R 129 (345)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 355678888777 8999999999999989999999999999999999753 458999999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 130 ~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~p 209 (345)
T 3a8x_A 130 GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSP 209 (345)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCC
Confidence 79999999530 11233699999999999988899999999999999999999999
Q ss_pred CCcCCCCCc---cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEM---SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|........ .....+...+ ..... ..+......+.+++.+||+.||.+||++
T Consensus 210 f~~~~~~~~~~~~~~~~~~~~i-------~~~~~-------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 210 FDIVGSSDNPDQNTEDYLFQVI-------LEKQI-------RIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp TTTTTC-------CHHHHHHHH-------HHCCC-------CCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred cCCcccccccccccHHHHHHHH-------HcCCC-------CCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 965321110 0001110000 00000 0011234467899999999999999996
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-24 Score=226.00 Aligned_cols=181 Identities=23% Similarity=0.213 Sum_probs=135.4
Q ss_pred Cchhhhh-hccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEV-LRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|... +..++|||++++++++...+..++||||+++|+|.+++.+. ..+++.....++.+++.||+|||. .+
T Consensus 85 ~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~g 159 (373)
T 2r5t_A 85 IMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE-RCFLEPRARFYAAEIASALGYLHS----LN 159 (373)
T ss_dssp ------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 3445544 56789999999999999999999999999999999999753 457888888999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. .....+||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 160 ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf 239 (373)
T 2r5t_A 160 IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPF 239 (373)
T ss_dssp CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred ceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCC
Confidence 9999999530 112346999999999999888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
..... ..+.+.+... +... +......+.+++.+|++.||.+||++.+.++.+
T Consensus 240 ~~~~~--~~~~~~i~~~-~~~~-----------------~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 240 YSRNT--AEMYDNILNK-PLQL-----------------KPNITNSARHLLEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp CCSBH--HHHHHHHHHS-CCCC-----------------CSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred CCCCH--HHHHHHHHhc-ccCC-----------------CCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence 65321 1111111111 0000 111234578999999999999999986544443
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-24 Score=221.18 Aligned_cols=186 Identities=23% Similarity=0.276 Sum_probs=140.6
Q ss_pred cCchhhhhhcc-ccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRN-VRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~-l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..+.+ .+|||++++++++...+..++||||+++|+|.+++... ..+++.....++.++++||+|||..
T Consensus 56 ~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 130 (316)
T 2ac3_A 56 RVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKR-RHFNELEASVVVQDVASALDFLHNK---- 130 (316)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45678888887 47999999999999888999999999999999999753 4589999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------------ccccccccccCccccccC-----CCcCccccch
Q 040540 527 PIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSE-----GIVSAKCDVY 566 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~ 566 (669)
+++|+|+|+... .....||+.|+|||++.. ..++.++|||
T Consensus 131 ~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diw 210 (316)
T 2ac3_A 131 GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLW 210 (316)
T ss_dssp TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHH
T ss_pred CceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccH
Confidence 799999985310 001238999999999864 4588999999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCCc-------------cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHH
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGEM-------------SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLA 633 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~~-------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 633 (669)
||||++|||+||+.||........ .+...+..... .... ..+......+.+++
T Consensus 211 slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~-----~~~~~~~~~~~~li 276 (316)
T 2ac3_A 211 SLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKY---------EFPD-----KDWAHISCAAKDLI 276 (316)
T ss_dssp HHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCC---------CCCH-----HHHTTSCHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCc---------ccCc-----hhcccCCHHHHHHH
Confidence 999999999999999976432210 01111111100 0000 00122345688999
Q ss_pred hhcccCCCCCCCCHHHHHH
Q 040540 634 LDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 634 ~~c~~~~P~~Rps~~~v~~ 652 (669)
.+|++.||++|||+.|+++
T Consensus 277 ~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 277 SKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHSCSSTTTSCCHHHHHH
T ss_pred HHHhhCChhhCCCHHHHhc
Confidence 9999999999999999986
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-24 Score=234.74 Aligned_cols=184 Identities=22% Similarity=0.254 Sum_probs=144.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++|||||++|+|.+++... ..+++..+..|+.+++.||+|||..
T Consensus 91 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 165 (504)
T 3q5i_A 91 EEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINR-HKFDECDAANIMKQILSGICYLHKH---- 165 (504)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667999999999999999999999999999999999999999999753 4589999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ......||+.|+|||++. ..++.++||||+||++|||++|+
T Consensus 166 ~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~ 244 (504)
T 3q5i_A 166 NIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGY 244 (504)
T ss_dssp TEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSS
T ss_pred CeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCC
Confidence 79999998531 112235899999999876 45899999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+...... ...+.+...+..+.+++.+|++.||.+|||+.|+++
T Consensus 245 ~pf~~~~--~~~~~~~i~~~~~~--------------~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 245 PPFGGQN--DQDIIKKVEKGKYY--------------FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp CSSCCSS--HHHHHHHHHHCCCC--------------CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCCC--HHHHHHHHHcCCCC--------------CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 9997532 11122222211100 001112334567889999999999999999999975
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=233.93 Aligned_cols=183 Identities=21% Similarity=0.252 Sum_probs=144.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..++|||++++++++......++||||+++|+|.+++...+ ..+++..+..++.+++.||+|||..
T Consensus 230 ~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---- 305 (576)
T 2acx_A 230 MALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---- 305 (576)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35678999999999999999999999899999999999999999997643 3489999999999999999999954
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|||+|+.. .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||
T Consensus 306 gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF 385 (576)
T 2acx_A 306 RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPF 385 (576)
T ss_dssp TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEeccCCchheEEEeCCCCeEEEecccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCC
Confidence 79999999530 112346999999999999888999999999999999999999999
Q ss_pred CcCCCCCc--cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEM--SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
........ .+...+.. .+... +...+..+.+++.+|++.||.+|| +++||++
T Consensus 386 ~~~~~~~~~~~i~~~i~~-~~~~~-----------------p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 386 QQRKKKIKREEVERLVKE-VPEEY-----------------SERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp SCSSSCCCHHHHHHHHHH-CCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred cccccchhHHHHHHHhhc-ccccC-----------------CccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 76432211 11221111 11111 112234678999999999999999 6777764
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-24 Score=227.11 Aligned_cols=186 Identities=18% Similarity=0.209 Sum_probs=141.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|..++..++|+|++++++++......++||||+++|+|.+++.+.+..+++..+..++.+++.||+|||. .
T Consensus 106 ~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~----~ 181 (412)
T 2vd5_A 106 SCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHR----L 181 (412)
T ss_dssp CCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 456678889999999999999999999999999999999999999998655578999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCcccccc-------CCCcCccccchhhHHHHH
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGS-------EGIVSAKCDVYSYGVLLM 573 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~s~Gvil~ 573 (669)
+|+|||+|+.. .....+||+.|+|||++. ...|+.++|||||||++|
T Consensus 182 giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvily 261 (412)
T 2vd5_A 182 GYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAY 261 (412)
T ss_dssp TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHH
T ss_pred CeeecccCHHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHH
Confidence 79999999530 011236999999999986 356899999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC---CCHHHH
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR---MHMTDA 650 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R---ps~~~v 650 (669)
||++|+.||....... .+...+........ +. .+...+..+.+++.+|+. +|.+| |+++|+
T Consensus 262 elltG~~Pf~~~~~~~-~~~~i~~~~~~~~~-----p~---------~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei 325 (412)
T 2vd5_A 262 EMFYGQTPFYADSTAE-TYGKIVHYKEHLSL-----PL---------VDEGVPEEARDFIQRLLC-PPETRLGRGGAGDF 325 (412)
T ss_dssp HHHHSSCTTCCSSHHH-HHHHHHTHHHHCCC-----C-------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHH
T ss_pred HHHhCCCCCCCCCHHH-HHHHHHhcccCcCC-----Cc---------cccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHH
Confidence 9999999997532111 01111110000000 00 012234567899999999 99998 588887
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
++
T Consensus 326 ~~ 327 (412)
T 2vd5_A 326 RT 327 (412)
T ss_dssp HT
T ss_pred hc
Confidence 54
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=221.92 Aligned_cols=175 Identities=19% Similarity=0.151 Sum_probs=137.1
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ +||+++++++++...+..++||||+++|+|.+++... ..+++.....++.+++.||+|||. .
T Consensus 66 ~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~ 140 (353)
T 2i0e_A 66 CTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFFLQS----K 140 (353)
T ss_dssp HHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 345677778776 7999999999999989999999999999999999853 358999999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 141 givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~P 220 (353)
T 2i0e_A 141 GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAP 220 (353)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCS
T ss_pred CEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCC
Confidence 79999999530 11234599999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|.... ...+.+.+...... . +...+..+.+++.+|+..||.+||++
T Consensus 221 f~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 221 FEGED--EDELFQSIMEHNVA-Y-----------------PKSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp SCCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred CCCCC--HHHHHHHHHhCCCC-C-----------------CCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 97532 11122211111000 0 11223467899999999999999964
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-25 Score=228.83 Aligned_cols=173 Identities=9% Similarity=0.042 Sum_probs=121.2
Q ss_pred ccceeeccCCCCChHHhhhcCCCccCHHHH------HHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc------------
Q 040540 476 FKALVLEFMPNGSLEKWLYSHNYFLDILER------LNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV------------ 537 (669)
Q Consensus 476 ~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~------~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~------------ 537 (669)
..++|||||+ |+|.+++...+....+..+ ..++.++++||+|||. .+|+|||+|+..
T Consensus 162 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~----~~ivHrDikp~NIll~~~~~~kL~ 236 (371)
T 3q60_A 162 NYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS----KGLVHGHFTPDNLFIMPDGRLMLG 236 (371)
T ss_dssp EEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHH----TTEEETTCSGGGEEECTTSCEEEC
T ss_pred eEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHH----CCCccCcCCHHHEEECCCCCEEEE
Confidence 3689999999 8999999864444565566 7788999999999995 479999999541
Q ss_pred ---------ccc-ccccccccCccccccC--CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCcc
Q 040540 538 ---------TQT-TTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLS 605 (669)
Q Consensus 538 ---------~~~-~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~ 605 (669)
... ...||+.|+|||++.+ ..++.++|||||||++|||+||+.||......... ...
T Consensus 237 DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~-----------~~~ 305 (371)
T 3q60_A 237 DVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG-----------SWK 305 (371)
T ss_dssp CGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTT-----------CCC
T ss_pred ecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCccccc-----------chh
Confidence 011 3357899999999987 67999999999999999999999999764322110 000
Q ss_pred ccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH--HHHHhHHHhhhh
Q 040540 606 EVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA--KLKKIKVKFLDD 664 (669)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~~~~~~~~~ 664 (669)
.............++.....+..+.+++.+||+.||++|||+.|+++ .++++.......
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~~ 366 (371)
T 3q60_A 306 RPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEISSS 366 (371)
T ss_dssp BCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHHHhhh
Confidence 00000000001111112234567889999999999999999999975 455555444333
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=218.27 Aligned_cols=184 Identities=22% Similarity=0.265 Sum_probs=144.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++|+|.+++... ..+++.....++.++++|++|||.. +
T Consensus 52 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~----~ 126 (304)
T 2jam_A 52 SLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILER-GVYTEKDASLVIQQVLSAVKYLHEN----G 126 (304)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567899999999999999999999888899999999999999999753 4588999999999999999999954 7
Q ss_pred eeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++... .....||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 127 i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 206 (304)
T 2jam_A 127 IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPP 206 (304)
T ss_dssp CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred ccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCC
Confidence 99999885311 0112378999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... ...+...+...... .. . +.+...+..+.+++.+|+..||++|||+.|+++
T Consensus 207 f~~~~--~~~~~~~i~~~~~~-~~----~---------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 207 FYEET--ESKLFEKIKEGYYE-FE----S---------PFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp TTTSC--HHHHHHHHHHCCCC-CC----T---------TTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCCC--HHHHHHHHHcCCCC-CC----c---------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 86532 11222222221110 00 0 011223456789999999999999999999986
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=221.37 Aligned_cols=199 Identities=16% Similarity=0.131 Sum_probs=140.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||++ |+|.+++... ..+++..+..|+.++++||+|||..
T Consensus 78 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~-~~~~~~~~~~i~~ql~~~l~~LH~~---- 151 (329)
T 3gbz_A 78 GTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE-NDLKKYMDKN-PDVSMRVIKSFLYQLINGVNFCHSR---- 151 (329)
T ss_dssp --CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred hhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCC-CCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 356689999999999999999999999999999999998 5999999754 3589999999999999999999954
Q ss_pred CeeecCCCCccc------------------------------ccccccccccCccccccCC-CcCccccchhhHHHHHHH
Q 040540 527 PIIHCEGEDSVT------------------------------QTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 527 ~i~h~d~~~~~~------------------------------~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el 575 (669)
+|+|+|+|+... .....||+.|+|||++.+. .++.++||||+||++|||
T Consensus 152 ~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el 231 (329)
T 3gbz_A 152 RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEM 231 (329)
T ss_dssp TCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHH
T ss_pred CEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 799999995410 1122468999999998774 489999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHh-CCCC--ccccc--------cccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKES-LPHR--LSEVV--------DTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~-~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
++|+.||..... ...+...+... .+.. +.... .+..................+.+++.+|++.||++|
T Consensus 232 l~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R 310 (329)
T 3gbz_A 232 LMKTPLFPGDSE-IDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKR 310 (329)
T ss_dssp HHSSCSSCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGS
T ss_pred HHCCCCcCCCCH-HHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhC
Confidence 999999965321 11122222211 1110 00000 000000000000111234567899999999999999
Q ss_pred CCHHHHHH
Q 040540 645 MHMTDAAA 652 (669)
Q Consensus 645 ps~~~v~~ 652 (669)
||+.|+++
T Consensus 311 ~t~~e~l~ 318 (329)
T 3gbz_A 311 ISAKNALE 318 (329)
T ss_dssp CCHHHHHT
T ss_pred CCHHHHhC
Confidence 99999975
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-24 Score=224.67 Aligned_cols=132 Identities=23% Similarity=0.276 Sum_probs=112.5
Q ss_pred cCchhhhhhcccc-----ccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVR-----HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~-----h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|..++..++ |+|++++++++......++||||+ +++|.+++.... ..+++.....++.|+++||+|||.
T Consensus 77 ~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~ 155 (360)
T 3llt_A 77 SAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRK 155 (360)
T ss_dssp HHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777775 999999999999888999999999 899999998643 358899999999999999999995
Q ss_pred CCCCCCeeecCCCCccc-----------------------------------------------ccccccccccCccccc
Q 040540 522 GHSSAPIIHCEGEDSVT-----------------------------------------------QTTTMATIGYMAPEYG 554 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~~-----------------------------------------------~~~~~gt~~y~aPE~~ 554 (669)
.+|+|||+|+... .....||+.|+|||++
T Consensus 156 ----~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~ 231 (360)
T 3llt_A 156 ----MSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVI 231 (360)
T ss_dssp ----TTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHH
T ss_pred ----CCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHH
Confidence 4799999985411 1122478999999999
Q ss_pred cCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 555 SEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 555 ~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
.+..++.++|||||||++|||+||+.||..
T Consensus 232 ~~~~~~~~~DiwslG~il~ell~g~~pf~~ 261 (360)
T 3llt_A 232 LNLGWDVSSDMWSFGCVLAELYTGSLLFRT 261 (360)
T ss_dssp TTCCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cCCCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence 998999999999999999999999999975
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-24 Score=226.24 Aligned_cols=134 Identities=22% Similarity=0.256 Sum_probs=115.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++......++||||+++|+|.+++... ..+++.....++.++++|++|||+. .
T Consensus 76 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lh~~---~ 151 (360)
T 3eqc_A 76 NQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREK---H 151 (360)
T ss_dssp HHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHh---C
Confidence 45678999999999999999999999888899999999999999999754 3588999999999999999999952 2
Q ss_pred CeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 527 PIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 527 ~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||.
T Consensus 152 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 231 (360)
T 3eqc_A 152 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP 231 (360)
T ss_dssp CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred CEEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 69999999541 1122358999999999998889999999999999999999999996
Q ss_pred c
Q 040540 584 E 584 (669)
Q Consensus 584 ~ 584 (669)
.
T Consensus 232 ~ 232 (360)
T 3eqc_A 232 P 232 (360)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-24 Score=215.28 Aligned_cols=180 Identities=22% Similarity=0.274 Sum_probs=142.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++......++||||+++|+|.+++... ..+++.....++.++++|+.|||. .+
T Consensus 60 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~~ 134 (284)
T 2vgo_A 60 QLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH-GRFDEQRSATFMEELADALHYCHE----RK 134 (284)
T ss_dssp HHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred HHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4667899999999999999999999888899999999999999999754 358899999999999999999994 48
Q ss_pred eeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 528 IIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
++|+|+++.. ......||+.|+|||++.+..++.++||||||+++|||++|+.||..
T Consensus 135 i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 214 (284)
T 2vgo_A 135 VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDS 214 (284)
T ss_dssp EECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC
T ss_pred ceecCCCHHHEEEcCCCCEEEecccccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCC
Confidence 9999998531 11223589999999999988899999999999999999999999975
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
... ......+... . ... +......+.+++.+|++.||.+||++.|+++
T Consensus 215 ~~~--~~~~~~~~~~---~------~~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 215 PSH--TETHRRIVNV---D------LKF---------PPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp SSH--HHHHHHHHTT---C------CCC---------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCH--hHHHHHHhcc---c------cCC---------CCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 321 1111111110 0 000 1122345789999999999999999999976
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-24 Score=217.43 Aligned_cols=198 Identities=21% Similarity=0.226 Sum_probs=138.8
Q ss_pred Cchhhhhhcccc---ccccceecccccccc-----ccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhh
Q 040540 449 FDSECEVLRNVR---HRNLIKIISSCSNPD-----FKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 449 ~~~e~~~l~~l~---h~niv~l~~~~~~~~-----~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+..|+..+..++ |||+++++++|.... ..++||||+. |+|.+++.... ..+++..+..|+.++++||+||
T Consensus 58 ~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~l 136 (308)
T 3g33_A 58 TVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFL 136 (308)
T ss_dssp HHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445666666654 999999999986644 4689999997 69999998643 2489999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
|.. +++|+|+|+.. ......||+.|+|||++.+..++.++||||+||++|||
T Consensus 137 H~~----~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l 212 (308)
T 3g33_A 137 HAN----CIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEM 212 (308)
T ss_dssp HHT----TCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHT
T ss_pred HHC----CcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHH
Confidence 954 79999999541 11223589999999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHh-CCC--Ccccccc---ccccc--hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKES-LPH--RLSEVVD---TNLVR--EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~-~~~--~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
++|+.||..... ...+....... .+. .+..... ..... .........+....+.+++.+|++.||++|||+
T Consensus 213 ~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~ 291 (308)
T 3g33_A 213 FRRKPLFCGNSE-ADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISA 291 (308)
T ss_dssp TTSSCSCCCSSH-HHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred HhCCCCCCCCCH-HHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCH
Confidence 999999975321 11122222211 111 0100000 00000 000000112344567899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 292 ~e~l~ 296 (308)
T 3g33_A 292 FRALQ 296 (308)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99975
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-24 Score=216.40 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=141.7
Q ss_pred ccCchhhhhhccccccccceeccccc--cccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS--NPDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+..|+..+..++|||++++++++. .....++||||+++|+|.+++... ...+++..+..++.++++|++|||.
T Consensus 50 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~ 129 (279)
T 2w5a_A 50 QMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR 129 (279)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35677999999999999999999874 356779999999999999999752 3458999999999999999999996
Q ss_pred CC-CCCCeeecCCCCccc-------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 522 GH-SSAPIIHCEGEDSVT-------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 522 ~~-~~~~i~h~d~~~~~~-------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.+ ...+++|+|+++... .....||+.|+|||...+..++.++||||||+++|||
T Consensus 130 ~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l 209 (279)
T 2w5a_A 130 RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209 (279)
T ss_dssp HC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHH
T ss_pred ccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHH
Confidence 42 113499999985410 0112478999999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
+||+.||.... ...+...+........ +......+.+++.+||+.||.+||++.|+++.+
T Consensus 210 ~~g~~p~~~~~--~~~~~~~i~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 210 CALMPPFTAFS--QKELAGKIREGKFRRI-----------------PYRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp HHSSCSSCCSS--HHHHHHHHHHTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred HHCCCCCcccC--HHHHHHHHhhcccccC-----------------CcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 99999987532 1222222222211110 112234578999999999999999999998754
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-24 Score=216.66 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=144.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++......++||||+++++|.+++.. ..+++.....++.++++|+.|||..
T Consensus 65 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---- 138 (303)
T 3a7i_A 65 EDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEP--GPLDETQIATILREILKGLDYLHSE---- 138 (303)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4567789999999999999999999888889999999999999999964 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||||+++|||++|+.|
T Consensus 139 ~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 218 (303)
T 3a7i_A 139 KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 218 (303)
T ss_dssp TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCC
Confidence 79999998431 11223589999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... .......+....+... +......+.+++.+||+.||++|||+.|+++
T Consensus 219 ~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 270 (303)
T 3a7i_A 219 HSELH--PMKVLFLIPKNNPPTL-----------------EGNYSKPLKEFVEACLNKEPSFRPTAKELLK 270 (303)
T ss_dssp TTTSC--HHHHHHHHHHSCCCCC-----------------CSSCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CCCcC--HHHHHHHhhcCCCCCC-----------------ccccCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 86532 1112222222111111 0112345789999999999999999999987
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-24 Score=223.30 Aligned_cols=200 Identities=18% Similarity=0.220 Sum_probs=146.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHh------hhcC-CCccCHHHHHHHHHhHHhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKW------LYSH-NYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~------l~~~-~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+.+..|+.++..++|||++++++++...+..++||||+++|+|.++ +... ...+++..+..++.++++|+.||
T Consensus 88 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l 167 (348)
T 2pml_X 88 DDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYI 167 (348)
T ss_dssp HHHHHHHHHHTTCCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999 6542 45789999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-----------------------cccccccccccCccccccCC-CcCc-cccchhhHHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEG-IVSA-KCDVYSYGVLLME 574 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~s~Gvil~e 574 (669)
|. ..+++|+|+++.. ......||..|+|||+..+. .++. ++|||||||++||
T Consensus 168 H~---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~ 244 (348)
T 2pml_X 168 HN---EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYV 244 (348)
T ss_dssp HH---TSCEECCCCCGGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHH
T ss_pred hc---cCCEeecCCChHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHH
Confidence 95 1489999998531 11223589999999999876 5666 9999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCC---CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPH---RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
|++|+.||...... ..+...+...... .......+..... ...........+.+++.+||+.||++|||+.|++
T Consensus 245 l~~g~~pf~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l 321 (348)
T 2pml_X 245 MFYNVVPFSLKISL-VELFNNIRTKNIEYPLDRNHFLYPLTNKK--STCSNNFLSNEDIDFLKLFLRKNPAERITSEDAL 321 (348)
T ss_dssp HHHSSCSSCCSSCS-HHHHHHHTSCCCCCCCSSSSSTTTTCC----------CCCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred HHhCCCCCCCCCcH-HHHHHHHhccCcCCccchhhhhccccccc--cccchhhcCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 99999999763321 2222222211110 0000000000000 0000123445788999999999999999999998
Q ss_pred H
Q 040540 652 A 652 (669)
Q Consensus 652 ~ 652 (669)
+
T Consensus 322 ~ 322 (348)
T 2pml_X 322 K 322 (348)
T ss_dssp T
T ss_pred c
Confidence 7
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-24 Score=218.74 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=140.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++++|.+++.. ...+++.....++.++++|++|||.. +
T Consensus 48 ~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~i~~~l~~~l~~lH~~----~ 122 (311)
T 4agu_A 48 IALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRY-QRGVPEHLVKSITWQTLQAVNFCHKH----N 122 (311)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCchHHHHHhh-hcCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 456789999999999999999999988889999999999999998874 35589999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......||+.|+|||++.+ ..++.++||||+||++|||+||+.|
T Consensus 123 ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p 202 (311)
T 4agu_A 123 CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPL 202 (311)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCC
Confidence 9999999531 0122358899999999876 5689999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCC-------------cc--ccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 582 TDEMFTGEMSLRRWVKESLPHR-------------LS--EVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
|..... ......+....... .. ..-++.-.. .........+..+.+++.+||+.||++|||
T Consensus 203 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 278 (311)
T 4agu_A 203 WPGKSD--VDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDME--PLELKFPNISYPALGLLKGCLHMDPTERLT 278 (311)
T ss_dssp CCCSSH--HHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCC--CHHHHCTTCCHHHHHHHHHHCCSSTTTSCC
T ss_pred CCCCCH--HHHHHHHHHHhcccccccccccccccccccCcCCCccccc--hhhhhcccccHHHHHHHHHHccCChhhcCC
Confidence 975321 11111111111000 00 000000000 000001234456789999999999999999
Q ss_pred HHHHHH
Q 040540 647 MTDAAA 652 (669)
Q Consensus 647 ~~~v~~ 652 (669)
++|+++
T Consensus 279 ~~ell~ 284 (311)
T 4agu_A 279 CEQLLH 284 (311)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999985
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-24 Score=216.88 Aligned_cols=185 Identities=22% Similarity=0.298 Sum_probs=140.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++.... ...++.....++.++++|++|||..
T Consensus 64 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-- 141 (295)
T 2clq_A 64 QPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN-- 141 (295)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC--
Confidence 346678999999999999999999988888999999999999999998643 3456888889999999999999954
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccCCC--cCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGI--VSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||+..+.. ++.++||||||+++|||+
T Consensus 142 --~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~ 219 (295)
T 2clq_A 142 --QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMA 219 (295)
T ss_dssp --TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHH
T ss_pred --CEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 79999998431 011235889999999986643 789999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||+.||.........+......... +.+ +......+.+++.+||+.||++||++.|+++
T Consensus 220 ~g~~pf~~~~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 220 TGKPPFYELGEPQAAMFKVGMFKVH--------PEI---------PESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp HTSCTTGGGSSHHHHHHHHHHHCCC--------CCC---------CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred HCCCCccCCCchhHHHHhhcccccc--------ccc---------cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 9999996532211111111111100 111 1122345789999999999999999999975
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-24 Score=221.27 Aligned_cols=184 Identities=23% Similarity=0.283 Sum_probs=142.1
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ +|||++++++++......++||||+++|+|.+++... ..+++..+..++.++++||.|||..
T Consensus 145 ~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~~LH~~---- 219 (365)
T 2y7j_A 145 ATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEK-VALSEKETRSIMRSLLEAVSFLHAN---- 219 (365)
T ss_dssp HHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 456788889888 7999999999998888999999999999999999753 4589999999999999999999954
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccC------CCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSE------GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 220 gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell 299 (365)
T 2y7j_A 220 NIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLL 299 (365)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHH
T ss_pred CeecCCCCHHHEEECCCCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHH
Confidence 79999998531 1122358999999998753 35889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||+.||.... ...+...+....... ..+.+...+..+.+++.+|++.||++|||+.|+++
T Consensus 300 ~g~~pf~~~~--~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 300 AGSPPFWHRR--QILMLRMIMEGQYQF--------------SSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HSSCSSCCSS--HHHHHHHHHHTCCCC--------------CHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HCCCCCCCCC--HHHHHHHHHhCCCCC--------------CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9999996521 111222221111000 00112233456789999999999999999999975
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-25 Score=249.68 Aligned_cols=377 Identities=15% Similarity=0.098 Sum_probs=207.7
Q ss_pred CCEEEEEcCCCCCcccccccccCC--CCCCEEeCCCCc-Ccc-cCCcccCCCCCCCEEEccCCcCCcc----CCccccCC
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNL--SFLVSLDISENN-FHG-HLPKELGQLRRLRVMSLAYNKLSGS----FPSWIGVL 122 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l--~~L~~L~Ls~N~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l 122 (669)
..++.|+|+++.+++..+..+..+ .+|++|+|++|. +.. .++.....+++|++|+|++|.+.+. ++..+.++
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 346667777666665544444442 337777777665 111 1122233566777777777766544 23334556
Q ss_pred cccccccccccCcc----ccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCc---ccCCccccCCC
Q 040540 123 SKLRILRLDYNNFT----GPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ---GQIPTEIGSLQ 195 (669)
Q Consensus 123 ~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~---~~~p~~~~~l~ 195 (669)
++|++|+|++|.++ +.++..+.++++|+.|++++|.+.+ +|..+.++++|++|+++..... +..+..+..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 67777777777765 2334445566777777777766654 5566666777777777643322 23334556666
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeC
Q 040540 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDL 275 (669)
Q Consensus 196 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 275 (669)
+|+.|+++++. .+.+|..+..+++|++|++++|.+++.....+...+++|++|+++++-..+.++..+..+++|+.|++
T Consensus 271 ~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 77777776643 23455666666777777777776654433333345677777777633222223333345666777777
Q ss_pred C-----------CCCcccc-CccccCCCCCCCEEEccCCccccCCCCCcccccccccC-CCCCCCEEECc----CCCCcc
Q 040540 276 G-----------FNSFSGH-IPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLT-NCRNLSNLALA----SNPLGG 338 (669)
Q Consensus 276 s-----------~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~-~l~~L~~L~l~----~n~l~~ 338 (669)
+ .|.+++. ++..+..+++|+.|++..|++++.. +..+. .+++|+.|+++ .|.+++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~--------~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES--------LESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH--------HHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH--------HHHHHhhCCCCcEEEEeecCCCccccC
Confidence 6 2444432 1222334666777777656554321 11222 25667777775 445544
Q ss_pred ccch-hHhhhhccccccceEeecCcc--cCCCCCcccc-ccCCCcEEecCCCccccc-CchhhcCCCCCCeeeCcCCccc
Q 040540 339 ILPQ-LIGNFSASLQNIYAFELGFND--LNGTIPTSIG-TLQQLQGFYVPENNLQGY-VPHDLCHLERLNILNLSGNKLS 413 (669)
Q Consensus 339 ~~~~-~~~~~~~~l~~l~~l~l~~n~--l~~~~~~~~~-~l~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~L~ls~n~l~ 413 (669)
.... .+......+++|+.|+++++. +++.....+. .+++|+.|++++|.+++. ++..+..+++|+.|++++|.++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 2111 122222335666777765432 4333333332 256677777777766652 3344456677777777777765
Q ss_pred ee-CcccccCCCCCCEEECCCCcce
Q 040540 414 GH-IPPCLASLTSLRELHLGSNKLS 437 (669)
Q Consensus 414 ~~-~p~~l~~l~~L~~L~l~~N~l~ 437 (669)
+. ++.....+++|++|++++|+++
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCC
Confidence 43 2333345677777777777755
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-24 Score=229.97 Aligned_cols=180 Identities=18% Similarity=0.183 Sum_probs=140.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|..++..++|||++++++++......++||||+++|+|.+++... ...+++.....++.+++.||+|||.
T Consensus 231 ~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~--- 307 (543)
T 3c4z_A 231 GAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQ--- 307 (543)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH---
Confidence 4567899999999999999999999888899999999999999999753 3468999999999999999999995
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|+|||+|+.. .....+||+.|+|||++.+..|+.++||||+||++|||+||+
T Consensus 308 -~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~ 386 (543)
T 3c4z_A 308 -RNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386 (543)
T ss_dssp -TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred -cCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCC
Confidence 479999999530 012236999999999999988999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.||....... .............. ..+...+..+.+++.+|++.||.+||++
T Consensus 387 ~PF~~~~~~~-~~~~~~~~i~~~~~---------------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 387 GPFRARGEKV-ENKELKQRVLEQAV---------------TYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp CSSCCTTCCC-CHHHHHHHHHHCCC---------------CCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred CCCCCCccch-hHHHHHHHHhhccc---------------CCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 9997642211 11111111110000 0011234567899999999999999976
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-24 Score=217.90 Aligned_cols=185 Identities=23% Similarity=0.258 Sum_probs=141.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++|||++++++++.... .++||||+++|+|.+++.. ...+++.....++.++++||+|||. .
T Consensus 60 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~----~ 133 (322)
T 2ycf_A 60 LNVETEIEILKKLNHPCIIKIKNFFDAED-YYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHE----N 133 (322)
T ss_dssp -CHHHHHHHHHHCCCTTBCCEEEEEESSS-EEEEEECCTTEETHHHHST-TCCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred hhHHHHHHHHHhCCCCCCceEeeEEcCCc-eEEEEecCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 35678999999999999999999886554 7899999999999999975 3568999999999999999999995 4
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCcccccc---CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++... .....||+.|+|||++. ...++.++|||||||++|||+
T Consensus 134 ~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~ 213 (322)
T 2ycf_A 134 GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL 213 (322)
T ss_dssp TEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHH
Confidence 799999985310 01124789999999863 456889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||..... ...+...+........ + ..+......+.+++.+||..||++||++.|+++
T Consensus 214 ~g~~pf~~~~~-~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 214 SGYPPFSEHRT-QVSLKDQITSGKYNFI-----P---------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp HSSCSSCSTTC-SSCHHHHHHHTCCCCC-----H---------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred hCCCCCcccch-HHHHHHHHHhCccccC-----c---------hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 99999976332 2233333332211100 0 011233456789999999999999999999985
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-24 Score=228.32 Aligned_cols=194 Identities=13% Similarity=0.107 Sum_probs=146.1
Q ss_pred cCchhhhhhccccccccc-eeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLI-KIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv-~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..++|.+.+ .+..++......++||||+ +++|.+++......+++..+..|+.|++.||+|||..
T Consensus 48 ~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---- 122 (483)
T 3sv0_A 48 QLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSK---- 122 (483)
T ss_dssp CHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 466788899989875544 4444555667779999999 8999999986566799999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 527 PIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
+|+|||+|+... .....||+.|+|||++.+..++.++|||||||+
T Consensus 123 gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvi 202 (483)
T 3sv0_A 123 SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYV 202 (483)
T ss_dssp TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHH
Confidence 799999984310 013358999999999999899999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCc-cHHHH-HHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 572 LMETFTRKRPTDEMFTGEM-SLRRW-VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
+|||++|+.||........ ..... ...... ..+. ......+..+.+++.+||+.+|++||++.+
T Consensus 203 l~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~--------~~~~------~l~~~~p~~l~~li~~cl~~dP~~RPs~~e 268 (483)
T 3sv0_A 203 LMYFLRGSLPWQGLKAGTKKQKYEKISEKKVA--------TSIE------ALCRGYPTEFASYFHYCRSLRFDDKPDYSY 268 (483)
T ss_dssp HHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHH--------SCHH------HHHTTSCHHHHHHHHHHHTCCTTCCCCHHH
T ss_pred HHHHHhCCCCCccccchhHHHHHHHHhhcccc--------ccHH------HHhcCCcHHHHHHHHHHhcCChhhCcCHHH
Confidence 9999999999976432221 11111 111100 0000 001223457889999999999999999999
Q ss_pred HHHHHHHhHHH
Q 040540 650 AAAKLKKIKVK 660 (669)
Q Consensus 650 v~~~l~~~~~~ 660 (669)
|++.|+++...
T Consensus 269 l~~~L~~l~~~ 279 (483)
T 3sv0_A 269 LKRLFRDLFIR 279 (483)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-24 Score=218.02 Aligned_cols=181 Identities=19% Similarity=0.242 Sum_probs=136.4
Q ss_pred ccCchhhhhhccccccccceecccccccc---------------------------------------------------
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD--------------------------------------------------- 475 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~--------------------------------------------------- 475 (669)
+.+..|+.++..++|||++++++++....
T Consensus 49 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (332)
T 3qd2_B 49 EKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQ 128 (332)
T ss_dssp HHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC-----------------------------------------
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCccccccccc
Confidence 45678999999999999999999874432
Q ss_pred ------ccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc----------
Q 040540 476 ------FKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------- 537 (669)
Q Consensus 476 ------~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------- 537 (669)
..++||||+++|+|.+++.... ...++.....++.|+++||+|||. .+++|||+|+..
T Consensus 129 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~----~~ivH~Dlkp~NIll~~~~~~k 204 (332)
T 3qd2_B 129 PSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHS----KGLMHRDLKPSNIFFTMDDVVK 204 (332)
T ss_dssp ---CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH----TTEECCCCCGGGEEECTTCCEE
T ss_pred CCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHh----CCeeecCCCcccEEEeCCCCEE
Confidence 2689999999999999998643 235666788999999999999995 479999999531
Q ss_pred ---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCc
Q 040540 538 ---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM 590 (669)
Q Consensus 538 ---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~ 590 (669)
......||+.|+|||++.+..++.++|||||||++|||++|..|+... .
T Consensus 205 L~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~----~ 280 (332)
T 3qd2_B 205 VGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER----V 280 (332)
T ss_dssp ECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH----H
T ss_pred EeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH----H
Confidence 001235899999999999888999999999999999999997764220 0
Q ss_pred cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 591 SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
......... ... .........+.+++.+||+.||++|||+.|+++
T Consensus 281 ~~~~~~~~~-----------~~~------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 281 RIITDVRNL-----------KFP------LLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHHHTT-----------CCC------HHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred HHHHHhhcc-----------CCC------cccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 011111100 000 112344556789999999999999999999975
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-24 Score=217.58 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=142.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++++...+..++||||+++++|.+++... ..+++.++..++.++++|++|||..
T Consensus 60 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 134 (294)
T 2rku_A 60 EKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLHRN---- 134 (294)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667899999999999999999999888899999999999999998753 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||...+..++.++||||||+++|||+||+.|
T Consensus 135 ~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p 214 (294)
T 2rku_A 135 RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPP 214 (294)
T ss_dssp TEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 79999998431 01123488999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|...... .....+... .. .+ +......+.+++.+||+.||++|||+.|+++
T Consensus 215 ~~~~~~~--~~~~~~~~~---~~------~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 215 FETSCLK--ETYLRIKKN---EY------SI---------PKHINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp TCCSSHH--HHHHHHHTT---CC------CC---------CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred CCCCCHH--HHHHHHhhc---cC------CC---------ccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 9753211 111111110 00 00 1112345788999999999999999999976
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=200.56 Aligned_cols=203 Identities=24% Similarity=0.228 Sum_probs=152.3
Q ss_pred ccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCC
Q 040540 94 ELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173 (669)
Q Consensus 94 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L 173 (669)
.+.++++|+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..+.++++|++|++++|.+++..+. +.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 4678889999999999988 5665553 6889999999999988888899999999999999988765443 778888
Q ss_pred CEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeeccc
Q 040540 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALST 253 (669)
Q Consensus 174 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~ 253 (669)
++|++++|.+. .+|..+..+++|++|++++|++++..|..|.++++|++|++++|.++ .+|...+..+++|++|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCC
Confidence 88888888887 66777888888888888888888777777777888888888888776 34544444567777777777
Q ss_pred CcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcc
Q 040540 254 NNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304 (669)
Q Consensus 254 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l 304 (669)
|++++..+..+..+++|+.|++++|.+. .+|..+....+|+.+++.+|.+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 7776555555666677777777777666 4455555555566666555544
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-24 Score=221.35 Aligned_cols=199 Identities=20% Similarity=0.204 Sum_probs=144.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++ +|.+++......+++.....++.++++|++|||.. +
T Consensus 58 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~----~ 132 (346)
T 1ua2_A 58 TALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH----W 132 (346)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 456799999999999999999999988899999999985 89999987666788889999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+|+.. ......||+.|+|||++.+. .++.++|||||||++|||++|..|
T Consensus 133 ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~ 212 (346)
T 1ua2_A 133 ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPF 212 (346)
T ss_dssp CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred EECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCC
Confidence 9999998531 11223589999999998664 589999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHh-CCC--Ccccc---ccccccchh---hhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKES-LPH--RLSEV---VDTNLVREE---QAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~-~~~--~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..... ...+....... .+. .+... .+....... +...........+.+++.+|++.||++|||+.|+++
T Consensus 213 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 213 LPGDSD-LDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp SCCSSH-HHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCCCH-HHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 865321 11122222211 111 11100 000000000 000011233467899999999999999999999986
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-23 Score=221.71 Aligned_cols=198 Identities=18% Similarity=0.162 Sum_probs=139.3
Q ss_pred Cchhhhhhccccccccceecccccc--------------------------------------ccccceeeccCCCCChH
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSN--------------------------------------PDFKALVLEFMPNGSLE 490 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~--------------------------------------~~~~~lv~ey~~~g~L~ 490 (669)
..+|+.+++.++|+|++++++++.. ....++||||++ |+|.
T Consensus 47 ~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~ 125 (383)
T 3eb0_A 47 KNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLH 125 (383)
T ss_dssp CCHHHHHHTTCCCTTBCCEEEEEEEC-------------------------------------CCEEEEEECCCS-EEHH
T ss_pred HHHHHHHHHHcCCCCccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHH
Confidence 4579999999999999999998733 234779999998 6888
Q ss_pred Hhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc-------------------------ccccc
Q 040540 491 KWLYS---HNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV-------------------------TQTTT 542 (669)
Q Consensus 491 ~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~-------------------------~~~~~ 542 (669)
+.+.. .+..+++.....++.|+++||+|||. .+|+|||+|+.. .....
T Consensus 126 ~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~----~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~ 201 (383)
T 3eb0_A 126 KVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS----LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAY 201 (383)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT----TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCc
Confidence 87763 45678999999999999999999994 489999998531 11223
Q ss_pred ccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCC----------Ccccccccc
Q 040540 543 MATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH----------RLSEVVDTN 611 (669)
Q Consensus 543 ~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~ 611 (669)
.||+.|+|||++.+. .++.++||||+||++|||++|+.||..... ...+...++..-.. ...+..-+.
T Consensus 202 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~ 280 (383)
T 3eb0_A 202 ICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETS-IDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPT 280 (383)
T ss_dssp CCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCC
T ss_pred ccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhCCCCHHHHHHhCcccccccCCc
Confidence 578999999988764 489999999999999999999999975321 11122222111100 000011111
Q ss_pred ccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 612 LVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.....+...+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 281 LKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA 321 (383)
T ss_dssp CCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 11111001112234556889999999999999999999985
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-24 Score=221.18 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=142.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++...+..++||||+++++|.+++... ..+++.++..++.++++||+|||..
T Consensus 86 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---- 160 (335)
T 2owb_A 86 EKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLHRN---- 160 (335)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667899999999999999999999988999999999999999998753 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus 161 ~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 240 (335)
T 2owb_A 161 RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPP 240 (335)
T ss_dssp TEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCC
Confidence 79999998531 01123589999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|...... .....+.... ... +......+.+++.+||+.||++||++.|+++
T Consensus 241 f~~~~~~--~~~~~~~~~~-~~~-----------------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 241 FETSCLK--ETYLRIKKNE-YSI-----------------PKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp TCCSSHH--HHHHHHHHTC-CCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred CCCCCHH--HHHHHHhcCC-CCC-----------------CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 9653211 1111111110 000 1112245678999999999999999999976
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-23 Score=224.05 Aligned_cols=198 Identities=17% Similarity=0.148 Sum_probs=138.3
Q ss_pred Cchhhhhhccccccccceecccccc------ccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
..+|+.+++.++|+|++++++++.. ....++||||+++ ++.+.+.. ....+++.....++.|+++||+||
T Consensus 94 ~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~L 172 (420)
T 1j1b_A 94 KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYI 172 (420)
T ss_dssp CCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999888743 2235789999985 67666642 346789999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLM 573 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~ 573 (669)
|. .+|+|||+|+.. .....+||+.|+|||++.+. .|+.++|||||||++|
T Consensus 173 H~----~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ 248 (420)
T 1j1b_A 173 HS----FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLA 248 (420)
T ss_dssp HT----TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred HH----CCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHH
Confidence 94 489999999430 11233589999999998764 6999999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCC----------CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLP----------HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||++|+.||.... ....+...++..-. ....+...+.+................+.+++.+||+.||.+
T Consensus 249 ell~G~~pf~~~~-~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~ 327 (420)
T 1j1b_A 249 ELLLGQPIFPGDS-GVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTA 327 (420)
T ss_dssp HHHHSSCSSCCSS-HHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGG
T ss_pred HHHhCCCCCCCCC-HHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhH
Confidence 9999999997632 11122222221110 001111111111110000001123457889999999999999
Q ss_pred CCCHHHHHH
Q 040540 644 RMHMTDAAA 652 (669)
Q Consensus 644 Rps~~~v~~ 652 (669)
||++.|+++
T Consensus 328 R~t~~e~l~ 336 (420)
T 1j1b_A 328 RLTPLEACA 336 (420)
T ss_dssp SCCHHHHHT
T ss_pred CCCHHHHhC
Confidence 999999975
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-24 Score=217.88 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=141.2
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|+..+..++ |||++++++++......++||||+++|+|.+++... ...+++..+..++.++++||+|||..
T Consensus 74 ~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~--- 150 (327)
T 3lm5_A 74 EILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN--- 150 (327)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 4567888888884 699999999999988999999999999999998643 35689999999999999999999954
Q ss_pred CCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 526 APIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 526 ~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+|+... .....||+.|+|||++.+..++.++||||+||++|||+||
T Consensus 151 -givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g 229 (327)
T 3lm5_A 151 -NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTH 229 (327)
T ss_dssp -TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred -CeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhC
Confidence 799999985310 1122589999999999988899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ......+...... ... +........+.+++.+||+.||++|||++|+++
T Consensus 230 ~~pf~~~~~--~~~~~~i~~~~~~-~~~-------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 230 TSPFVGEDN--QETYLNISQVNVD-YSE-------------ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp SCSSCCSSH--HHHHHHHHHTCCC-CCT-------------TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCCCCCCc--hHHHHHHHhcccc-cCc-------------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 999965321 1111111111100 000 001123445789999999999999999999975
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-24 Score=212.87 Aligned_cols=180 Identities=21% Similarity=0.291 Sum_probs=135.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++++|.+++... ..+++.....++.++++|++|||.. +
T Consensus 57 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~----~ 131 (276)
T 2h6d_A 57 KIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH-GRVEEMEARRLFQQILSAVDYCHRH----M 131 (276)
T ss_dssp HHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567899999999999999999999888999999999999999999754 3588999999999999999999954 7
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......||+.|+|||...+..+ +.++||||||+++|||++|+.||
T Consensus 132 i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~ 211 (276)
T 2h6d_A 132 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPF 211 (276)
T ss_dssp SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CccCCCChhhEEECCCCCEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCC
Confidence 9999998531 0112347899999999887664 68999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... ...+...+...... . +......+.+++.+|++.||++|||+.|+++
T Consensus 212 ~~~~--~~~~~~~~~~~~~~-~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 212 DDEH--VPTLFKKIRGGVFY-I-----------------PEYLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp CCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCc--HHHHHHHhhcCccc-C-----------------chhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 6532 11122222221110 0 1112345679999999999999999999987
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-24 Score=219.89 Aligned_cols=185 Identities=21% Similarity=0.168 Sum_probs=140.2
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..+ .|+|++++++++......++||||+++|+|.+++... ..+++.....++.|+++||.|||..
T Consensus 103 ~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~--- 178 (355)
T 1vzo_A 103 EHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR-ERFTEHEVQIYVGEIVLALEHLHKL--- 178 (355)
T ss_dssp GGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 4566789999998 5999999999998888899999999999999999753 4588999999999999999999954
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccC--CCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el~t 577 (669)
+|+|||+|+.. ......||+.|+|||++.+ ..++.++|||||||++|||+|
T Consensus 179 -~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~ 257 (355)
T 1vzo_A 179 -GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT 257 (355)
T ss_dssp -TCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHH
T ss_pred -CcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHH
Confidence 79999999530 0112358999999999875 347899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
|+.||....... ............. +. .+.+....+.+++.+||..||.+|| ++.|+++
T Consensus 258 g~~pf~~~~~~~-~~~~~~~~~~~~~------~~---------~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~ 321 (355)
T 1vzo_A 258 GASPFTVDGEKN-SQAEISRRILKSE------PP---------YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 321 (355)
T ss_dssp SSCTTSCTTSCC-CHHHHHHHHHHCC------CC---------CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred CCCCCccCCccc-hHHHHHHHHhccC------CC---------CCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence 999997532221 1222221111000 00 0112234578999999999999999 8888876
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-24 Score=227.12 Aligned_cols=185 Identities=13% Similarity=0.171 Sum_probs=133.4
Q ss_pred ccCchhh---hhhccccccccceeccccc-------ccc-----------------ccceeeccCCCCChHHhhhcCC--
Q 040540 447 RSFDSEC---EVLRNVRHRNLIKIISSCS-------NPD-----------------FKALVLEFMPNGSLEKWLYSHN-- 497 (669)
Q Consensus 447 ~~~~~e~---~~l~~l~h~niv~l~~~~~-------~~~-----------------~~~lv~ey~~~g~L~~~l~~~~-- 497 (669)
+.+..|+ ..+..++|||++++++.+. .++ ..++||||+ +|+|.+++...+
T Consensus 118 ~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~ 196 (377)
T 3byv_A 118 KQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSH 196 (377)
T ss_dssp HHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhcccc
Confidence 4566788 5666778999999985443 221 367999999 589999997532
Q ss_pred ----CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc----------------------cccccccccccCcc
Q 040540 498 ----YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAP 551 (669)
Q Consensus 498 ----~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aP 551 (669)
..+++..+..|+.|+++||+|||.. +|+|||+|+.. ......| +.|+||
T Consensus 197 ~~~~~~l~~~~~~~i~~qi~~aL~~LH~~----~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aP 271 (377)
T 3byv_A 197 SSTHKSLVHHARLQLTLQVIRLLASLHHY----GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS-RGFEPP 271 (377)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHT----TEECSCCCGGGEEECTTCCEEECCGGGCEETTCEEECCCC-TTCCCH
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhC----CeecCCCCHHHEEEcCCCCEEEEechhheecCCcccCCCC-cCccCh
Confidence 2344678889999999999999954 79999999541 1122347 999999
Q ss_pred ccccCC-----------CcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhh
Q 040540 552 EYGSEG-----------IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFS 620 (669)
Q Consensus 552 E~~~~~-----------~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (669)
|++.+. .++.++|||||||++|||+||+.||........ ...+.. .
T Consensus 272 E~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~-------------~~~~~~-~--------- 328 (377)
T 3byv_A 272 ELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGG-------------SEWIFR-S--------- 328 (377)
T ss_dssp HHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CC-------------SGGGGS-S---------
T ss_pred hhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccc-------------hhhhhh-h---------
Confidence 999877 799999999999999999999999965321110 011110 0
Q ss_pred hhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH--HHHHhHHHh
Q 040540 621 AKMDCLLSIMDLALDCCMESPDKRMHMTDAAA--KLKKIKVKF 661 (669)
Q Consensus 621 ~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~~~~~~ 661 (669)
....+..+.+++.+||+.||++|||+.|+++ .++++....
T Consensus 329 -~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~ 370 (377)
T 3byv_A 329 -CKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTEL 370 (377)
T ss_dssp -CCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHHHHH
T ss_pred -ccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHHHHH
Confidence 0122345789999999999999999999986 555555443
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=217.63 Aligned_cols=186 Identities=14% Similarity=0.054 Sum_probs=143.0
Q ss_pred cCchhhhhhcccc---ccccceeccccccccccceeeccCCCCChHHhhhc----CCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNVR---HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS----HNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~----~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|...+..++ |+|++.+++++...+..++|||||++|+|.+++.. ....+++..+..|+.|+++||+|||
T Consensus 110 ~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH 189 (365)
T 3e7e_A 110 EFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH 189 (365)
T ss_dssp HHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh
Confidence 3445666665555 99999999999999999999999999999999974 3456999999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc--------------------------------------cccccccccccCccccccCCCcCcc
Q 040540 521 HGHSSAPIIHCEGEDSV--------------------------------------TQTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~--------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
. .+|+|||+|+.. .....+||+.|||||++.+..++.+
T Consensus 190 ~----~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~ 265 (365)
T 3e7e_A 190 D----CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQ 265 (365)
T ss_dssp T----TTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTH
T ss_pred h----CCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCcc
Confidence 4 479999998431 0112248999999999999889999
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
+|||||||++|||+||+.||.....+.. .+...+.. .+ ......+++.+|++.+|.
T Consensus 266 ~DiwslG~il~elltg~~pf~~~~~~~~----------------~~~~~~~~----~~----~~~~~~~~~~~~l~~~p~ 321 (365)
T 3e7e_A 266 IDYFGVAATVYCMLFGTYMKVKNEGGEC----------------KPEGLFRR----LP----HLDMWNEFFHVMLNIPDC 321 (365)
T ss_dssp HHHHHHHHHHHHHHHSSCCCEEEETTEE----------------EECSCCTT----CS----SHHHHHHHHHHHHCCCCT
T ss_pred ccHHHHHHHHHHHHhCCCccccCCCCce----------------eechhccc----cC----cHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999854222111 00011110 00 123456889999999999
Q ss_pred CC-CCHHHHHHHHHHhHHHh
Q 040540 643 KR-MHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~R-ps~~~v~~~l~~~~~~~ 661 (669)
+| |+++++.+.|+++.+..
T Consensus 322 ~r~~~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 322 HHLPSLDLLRQKLKKVFQQH 341 (365)
T ss_dssp TCCCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHh
Confidence 98 58899998888876553
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=223.14 Aligned_cols=195 Identities=19% Similarity=0.151 Sum_probs=137.7
Q ss_pred ccCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+.+|+.+++.++||||+++++++.... ..++|||||++ ++.+.+.. .+++..+..++.|+++||+|||
T Consensus 106 ~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH 181 (464)
T 3ttj_A 106 KRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH 181 (464)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999886543 45899999985 57777753 3888999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.. +|+|||+|+.. .....+||+.|+|||++.+..|+.++||||+||++|||+
T Consensus 182 ~~----~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell 257 (464)
T 3ttj_A 182 SA----GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 257 (464)
T ss_dssp HT----TCCCCCCCGGGEEECTTSCEEECCCCCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred HC----CcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 54 79999999541 122346899999999999989999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhC-C--------------------CC----ccccccccccchhhhhhhhHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESL-P--------------------HR----LSEVVDTNLVREEQAFSAKMDCLLSIMD 631 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~-~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (669)
+|+.||.+.... ..+...++..- + .. +.......+.. ............+.+
T Consensus 258 ~g~~pF~g~~~~-~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~d 334 (464)
T 3ttj_A 258 RHKILFPGRDYI-DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFP--ADSEHNKLKASQARD 334 (464)
T ss_dssp HSSCSSCCSSHH-HHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSC--CSSHHHHHHHHHHHH
T ss_pred hCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccc--cccccccccCHHHHH
Confidence 999999753210 11111111100 0 00 00000000000 000112234667899
Q ss_pred HHhhcccCCCCCCCCHHHHHH
Q 040540 632 LALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 632 l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++.+|++.||++|||++|+++
T Consensus 335 Ll~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 335 LLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp HHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHcCCChhhCCCHHHHhc
Confidence 999999999999999999986
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-24 Score=213.47 Aligned_cols=180 Identities=20% Similarity=0.190 Sum_probs=134.5
Q ss_pred hhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 452 e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+...++..+|||++++++++......++||||++ |+|.+++.. .+..+++..+..|+.++++|++|||.. .++
T Consensus 56 ~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~i 131 (290)
T 3fme_A 56 LDISMRTVDCPFTVTFYGALFREGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK---LSV 131 (290)
T ss_dssp HHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---SCC
T ss_pred HHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc---CCe
Confidence 3444777899999999999999889999999998 588888754 456789999999999999999999942 279
Q ss_pred eecCCCCcc------------------------cccccccccccCccccc----cCCCcCccccchhhHHHHHHHHhCCC
Q 040540 529 IHCEGEDSV------------------------TQTTTMATIGYMAPEYG----SEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 529 ~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|+|+.. ......||+.|+|||++ .+..++.++||||+||++|||+||+.
T Consensus 132 ~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~ 211 (290)
T 3fme_A 132 IHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRF 211 (290)
T ss_dssp CCCCCSGGGCEECTTCCEEBCCC---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSC
T ss_pred ecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCC
Confidence 999999541 01122589999999995 45668999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.........+........+... ....+..+.+++.+|++.||++|||+.|+++
T Consensus 212 p~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 212 PYDSWGTPFQQLKQVVEEPSPQLP-----------------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp SSCCCSCHHHHHHHHHHSCCCCCC-----------------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CccccCchHHHHHHHhccCCCCcc-----------------cccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 997532222222222222111100 1122345789999999999999999999987
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-24 Score=219.55 Aligned_cols=199 Identities=20% Similarity=0.180 Sum_probs=143.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||++++++.+++.. ...+++.....++.++++|++|||.. +
T Consensus 70 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~----~ 144 (331)
T 4aaa_A 70 IAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELF-PNGLDYQVVQKYLFQIINGIGFCHSH----N 144 (331)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHS-TTCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 456789999999999999999999988889999999999999888764 34589999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......||+.|+|||++.+. .++.++||||+||++|||+||+.|
T Consensus 145 ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p 224 (331)
T 4aaa_A 145 IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPL 224 (331)
T ss_dssp CCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred EEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCC
Confidence 9999999541 01223589999999998775 689999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCC------------CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLP------------HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|...... ..+...+...-. ........+.+.............+..+.+++.+||+.||++|||+.|
T Consensus 225 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e 303 (331)
T 4aaa_A 225 FPGDSDI-DQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAE 303 (331)
T ss_dssp CCCSSHH-HHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGG
T ss_pred CCCCCcH-HHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHH
Confidence 9753211 111111111000 000000011111110001112234567899999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 304 ll~ 306 (331)
T 4aaa_A 304 LLH 306 (331)
T ss_dssp GGG
T ss_pred Hhc
Confidence 986
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-24 Score=219.23 Aligned_cols=189 Identities=20% Similarity=0.230 Sum_probs=128.2
Q ss_pred ccCchhhhhhcccc-ccccceeccccc--------cccccceeeccCCCCChHHhhhc--CCCccCHHHHHHHHHhHHhh
Q 040540 447 RSFDSECEVLRNVR-HRNLIKIISSCS--------NPDFKALVLEFMPNGSLEKWLYS--HNYFLDILERLNIMIDVGSA 515 (669)
Q Consensus 447 ~~~~~e~~~l~~l~-h~niv~l~~~~~--------~~~~~~lv~ey~~~g~L~~~l~~--~~~~l~~~~~~~i~~~i~~~ 515 (669)
+.+..|+..+..+. |||++++++++. .....+++|||+. |+|.+++.. ....+++..+..|+.+++.|
T Consensus 70 ~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~ 148 (337)
T 3ll6_A 70 RAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRA 148 (337)
T ss_dssp HHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence 34667888898886 999999998873 3445689999996 799999864 34568999999999999999
Q ss_pred hhhhhcCCCCCCeeecCCCCccc--------------c-----------------------cccccccccCccccc---c
Q 040540 516 LEYLRHGHSSAPIIHCEGEDSVT--------------Q-----------------------TTTMATIGYMAPEYG---S 555 (669)
Q Consensus 516 l~~lh~~~~~~~i~h~d~~~~~~--------------~-----------------------~~~~gt~~y~aPE~~---~ 555 (669)
|+|||.. .++++|+|+|+... . ....||+.|+|||++ .
T Consensus 149 l~~LH~~--~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~ 226 (337)
T 3ll6_A 149 VQHMHRQ--KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYS 226 (337)
T ss_dssp HHHHHTS--SSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCT
T ss_pred HHHHHhC--CCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccc
Confidence 9999954 23499999995310 0 022488999999998 4
Q ss_pred CCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 556 EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 556 ~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
+..++.++|||||||++|||+||+.||...... ........... .......+.+++.+
T Consensus 227 ~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-----~~~~~~~~~~~-----------------~~~~~~~~~~li~~ 284 (337)
T 3ll6_A 227 NFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL-----RIVNGKYSIPP-----------------HDTQYTVFHSLIRA 284 (337)
T ss_dssp TSCSSHHHHHHHHHHHHHHHHHSSCCC-----------------CCCCT-----------------TCCSSGGGHHHHHH
T ss_pred cCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH-----HhhcCcccCCc-----------------ccccchHHHHHHHH
Confidence 566899999999999999999999998652211 11111110000 01111236789999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
||+.||.+||++.|+++.|+++...
T Consensus 285 ~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 285 MLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp HSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HccCChhhCcCHHHHHHHHHHHHhc
Confidence 9999999999999999999998765
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-23 Score=212.40 Aligned_cols=226 Identities=18% Similarity=0.164 Sum_probs=178.1
Q ss_pred CCCCEEeCCCCcCcccCCc---ccCCCCCCCEEEccCCcCCccCCccc--cCCcccccccccccCccccCC----cccCC
Q 040540 75 SFLVSLDISENNFHGHLPK---ELGQLRRLRVMSLAYNKLSGSFPSWI--GVLSKLRILRLDYNNFTGPIP----NSLFN 145 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~ 145 (669)
..++.|.+.++.+....-. .+..+++|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3578888888776532111 12234669999999999998888887 889999999999999987555 34567
Q ss_pred CCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCccc--C--CccccCCCCCCEEEccCCCCCCCCCc----cccC
Q 040540 146 LSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ--I--PTEIGSLQNLKNLDLADNKLSGLIPP----TIFN 217 (669)
Q Consensus 146 l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~--~--p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~ 217 (669)
+++|++|++++|.+.+..|..++.+++|++|++++|++.+. + +..++.+++|++|++++|.++.. +. .+.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhc
Confidence 89999999999999888888999999999999999998652 2 23346888999999999999743 32 2467
Q ss_pred CCCCcEEEcccCCCccccchhhhcc--CCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCC
Q 040540 218 ISTMRILTLESNQLSGRLPSTIGHS--LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS 295 (669)
Q Consensus 218 l~~L~~L~l~~n~l~~~~p~~~~~~--l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 295 (669)
+++|++|++++|.+++..|..+..- +++|++|++++|+++ .+|..+. ++|+.|++++|.+.+. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999987777666531 269999999999998 5676664 7999999999999864 43 67889999
Q ss_pred EEEccCCcccc
Q 040540 296 VLNVMMNNLTT 306 (669)
Q Consensus 296 ~L~l~~N~l~~ 306 (669)
.|++++|.++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998865
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=218.84 Aligned_cols=197 Identities=20% Similarity=0.194 Sum_probs=140.4
Q ss_pred ccCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+.+|+.++..++|||++++++++.... ..++||||+ +++|.++++. ..+++.....++.|+++||+|||
T Consensus 69 ~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH 145 (367)
T 1cm8_A 69 KRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIH 145 (367)
T ss_dssp HHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 34667999999999999999999887653 358999999 7899999975 35888999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 521 HGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
.. +|+|||+|+.. .....+||+.|+|||++.+ ..++.++||||+||++|||++
T Consensus 146 ~~----~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~ 221 (367)
T 1cm8_A 146 AA----GIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMIT 221 (367)
T ss_dssp HT----TEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HC----CccccCcCHHHEEEcCCCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHh
Confidence 54 79999999541 1223468999999999877 679999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhC-CC-Ccccccc-----------ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESL-PH-RLSEVVD-----------TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|+.||...... ..+...+.... +. .....+. +...... ...........+.+++.+|++.||++|
T Consensus 222 g~~pf~~~~~~-~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~mL~~dP~~R 299 (367)
T 1cm8_A 222 GKTLFKGSDHL-DQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKD-FASILTNASPLAVNLLEKMLVLDAEQR 299 (367)
T ss_dssp SSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCC-GGGTCTTCCHHHHHHHHHHSCSSTTTS
T ss_pred CCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCC-HHHHCCCCCHHHHHHHHHHccCChhHC
Confidence 99999753210 11111111100 00 0000000 0000000 000012334568899999999999999
Q ss_pred CCHHHHHH
Q 040540 645 MHMTDAAA 652 (669)
Q Consensus 645 ps~~~v~~ 652 (669)
||++|+++
T Consensus 300 ~t~~e~l~ 307 (367)
T 1cm8_A 300 VTAGEALA 307 (367)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHhc
Confidence 99999987
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=212.24 Aligned_cols=180 Identities=13% Similarity=0.164 Sum_probs=138.3
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
..+..|+..+..+ +|||++++++++...+..++||||+++|+|.+++... ...+++..+..|+.++++||+|||.
T Consensus 55 ~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~- 133 (289)
T 1x8b_A 55 QNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS- 133 (289)
T ss_dssp HHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 3455677788877 8999999999999888999999999999999999753 2458999999999999999999995
Q ss_pred CCCCCeeecCCCCccc----------------------------------------ccccccccccCccccccCC-CcCc
Q 040540 523 HSSAPIIHCEGEDSVT----------------------------------------QTTTMATIGYMAPEYGSEG-IVSA 561 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~~----------------------------------------~~~~~gt~~y~aPE~~~~~-~~~~ 561 (669)
.+++|+|+|+... .....||+.|+|||++.+. .++.
T Consensus 134 ---~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~ 210 (289)
T 1x8b_A 134 ---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLP 210 (289)
T ss_dssp ---TTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHH
T ss_pred ---CCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCc
Confidence 4799999985311 1112478999999998775 5778
Q ss_pred cccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 562 KCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 562 ~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
++|||||||++|||++|+.|+... . ....+...... .+ +......+.+++.+||+.||
T Consensus 211 ~~Di~slG~il~~l~~~~~~~~~~----~-~~~~~~~~~~~--------~~---------~~~~~~~~~~li~~~l~~dp 268 (289)
T 1x8b_A 211 KADIFALALTVVCAAGAEPLPRNG----D-QWHEIRQGRLP--------RI---------PQVLSQEFTELLKVMIHPDP 268 (289)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCSSS----H-HHHHHHTTCCC--------CC---------SSCCCHHHHHHHHHHTCSSG
T ss_pred hhhHHHHHHHHHHHhcCCCCCcch----h-HHHHHHcCCCC--------CC---------CcccCHHHHHHHHHHhCCCc
Confidence 999999999999999999775431 1 11111111110 01 11123457899999999999
Q ss_pred CCCCCHHHHHH
Q 040540 642 DKRMHMTDAAA 652 (669)
Q Consensus 642 ~~Rps~~~v~~ 652 (669)
++|||+.|+++
T Consensus 269 ~~Rps~~~ll~ 279 (289)
T 1x8b_A 269 ERRPSAMALVK 279 (289)
T ss_dssp GGSCCHHHHHT
T ss_pred ccCCCHHHHhh
Confidence 99999999975
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-24 Score=217.96 Aligned_cols=198 Identities=18% Similarity=0.197 Sum_probs=140.9
Q ss_pred ccCchhhhhhcccc-ccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVR-HRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+.++..++ |+|++++++++.. ....++||||+++++|.+++.. +++.+...++.++++|++|||.
T Consensus 75 ~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH~-- 148 (330)
T 3nsz_A 75 KKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCHS-- 148 (330)
T ss_dssp HHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHHh--
Confidence 34667999999997 9999999999877 5567899999999999999863 7888999999999999999995
Q ss_pred CCCCeeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 524 SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+|+.. ......||..|+|||++.+ ..++.++||||+||++|||++
T Consensus 149 --~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~ 226 (330)
T 3nsz_A 149 --MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF 226 (330)
T ss_dssp --TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred --CCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHh
Confidence 479999999531 1122358899999999877 668999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHH------------HhCCC---Cccccccccc---cchhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 578 RKRPTDEMFTGEMSLRRWVK------------ESLPH---RLSEVVDTNL---VREEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~------------~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
|+.||.........+..... ..... ...+...... .........+......+.+++.+|++.
T Consensus 227 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~ 306 (330)
T 3nsz_A 227 RKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRY 306 (330)
T ss_dssp TCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCS
T ss_pred CCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcC
Confidence 99999643222111211111 11000 0000000000 000000011122456789999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
||++|||++|+++
T Consensus 307 dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 307 DHQSRLTAREAME 319 (330)
T ss_dssp SGGGSCCHHHHHT
T ss_pred CcccCCCHHHHhc
Confidence 9999999999976
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=223.30 Aligned_cols=183 Identities=18% Similarity=0.238 Sum_probs=136.4
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.++..+ +||||+++++++......++|||||+ |+|.+++........+.+...++.|+++||+|||..
T Consensus 63 ~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---- 137 (432)
T 3p23_A 63 FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL---- 137 (432)
T ss_dssp ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHC----
Confidence 356789999888 79999999999998888999999997 699999987655555566778999999999999954
Q ss_pred CeeecCCCCccc---------------------------------ccccccccccCccccccC---CCcCccccchhhHH
Q 040540 527 PIIHCEGEDSVT---------------------------------QTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGV 570 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------------~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv 570 (669)
+|+|||+|+... .....||+.|+|||++.+ ..++.++|||||||
T Consensus 138 ~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~ 217 (432)
T 3p23_A 138 NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGC 217 (432)
T ss_dssp TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHH
T ss_pred cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHH
Confidence 799999985310 011248999999999873 55788999999999
Q ss_pred HHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 571 LLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 571 il~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
++|||+| |+.||...... .... ........... ........+.+++.+||+.||.+|||+.|
T Consensus 218 il~ellt~g~~pf~~~~~~---~~~~---~~~~~~~~~~~-----------~~~~~~~~~~~li~~~L~~dP~~Rps~~e 280 (432)
T 3p23_A 218 VFYYVISEGSHPFGKSLQR---QANI---LLGACSLDCLH-----------PEKHEDVIARELIEKMIAMDPQKRPSAKH 280 (432)
T ss_dssp HHHHHHTTSCBTTBSTTTH---HHHH---HTTCCCCTTSC-----------TTCHHHHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred HHHHHHcCCCCCcchhhHH---HHHH---HhccCCccccC-----------ccccccHHHHHHHHHHHhCCHhhCCCHHH
Confidence 9999999 89898542211 1111 11110000010 01233455789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
|++
T Consensus 281 vl~ 283 (432)
T 3p23_A 281 VLK 283 (432)
T ss_dssp HHT
T ss_pred HHh
Confidence 984
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=198.03 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=155.8
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCc-CCccCCccccCCcccccccccc-cCccccCCcccCCCCCCCeee
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK-LSGSFPSWIGVLSKLRILRLDY-NNFTGPIPNSLFNLSRLEMLR 153 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ 153 (669)
+|++|++++|.+++..+..|..+++|++|++++|+ +.+..+..|.++++|++|+|++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888887777788888888888888886 7766666788888888888888 888877777888888888888
Q ss_pred cccccccccCCcccCCCCCCC---EEEcccC-CCcccCCccccCCCCCC-EEEccCCCCCCCCCccccCCCCCcEEEccc
Q 040540 154 AEFNIIGGTIPSRIGNLRKLV---NLGLWSC-NLQGQIPTEIGSLQNLK-NLDLADNKLSGLIPPTIFNISTMRILTLES 228 (669)
Q Consensus 154 l~~n~l~~~~p~~~~~L~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 228 (669)
+++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.++ .+|...+..++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 88888876 665 78888887 8999988 88877777788888899 9999999888 4455444447889999999
Q ss_pred CC-CccccchhhhccC-CCCCeeecccCcccccCCccccCCCCCCEEeCCCC
Q 040540 229 NQ-LSGRLPSTIGHSL-RNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN 278 (669)
Q Consensus 229 n~-l~~~~p~~~~~~l-~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n 278 (669)
|. ++ .+|...+..+ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 95 76 5655555567 8899999999988754433 5677888888765
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-24 Score=223.84 Aligned_cols=267 Identities=15% Similarity=0.148 Sum_probs=155.3
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCC----cccCCCC-CCCEEEccCCcCCccCCccccCC-----ccc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLP----KELGQLR-RLRVMSLAYNKLSGSFPSWIGVL-----SKL 125 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L 125 (669)
++++.++++|.+|..+...++|++|||++|.+.+..+ ..|..++ +|++|+|++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888888777766666678888888888876665 6677777 78888888888877666666664 788
Q ss_pred ccccccccCccccCCcccC----CC-CCCCeeecccccccccCCcccC----C-CCCCCEEEcccCCCcccC----Cccc
Q 040540 126 RILRLDYNNFTGPIPNSLF----NL-SRLEMLRAEFNIIGGTIPSRIG----N-LRKLVNLGLWSCNLQGQI----PTEI 191 (669)
Q Consensus 126 ~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~l~~n~l~~~~p~~~~----~-L~~L~~L~l~~n~l~~~~----p~~~ 191 (669)
++|+|++|.+++..+..++ .+ ++|++|++++|.+++..+..+. . .++|++|++++|.++... +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 8888888887765555333 33 6677777777766655443332 2 246666666666665322 2223
Q ss_pred cCCC-CCCEEEccCCCCCCCCCccccC----C-CCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCcccc
Q 040540 192 GSLQ-NLKNLDLADNKLSGLIPPTIFN----I-STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSIT 265 (669)
Q Consensus 192 ~~l~-~L~~L~l~~N~l~~~~p~~~~~----l-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 265 (669)
..++ +|++|++++|.+++..+..+.. . ++|++|++++|.+++.-.. .++..+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~---------------------~l~~~l~ 221 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA---------------------ELAYIFS 221 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH---------------------HHHHHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH---------------------HHHHHHh
Confidence 3333 5666666666665544433322 2 3555555555555421100 0122222
Q ss_pred C-CCCCCEEeCCCCCccccCc----cccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCcccc
Q 040540 266 N-ATKLIGLDLGFNSFSGHIP----NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGIL 340 (669)
Q Consensus 266 ~-l~~L~~L~ls~n~l~~~~p----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 340 (669)
. .++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+...... ........+..+++|+.|++++|++....
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~-~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE-QCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH-HHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH-HHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 2 2345555555555544322 2345566677777777764433210 00112234556777888888888887664
Q ss_pred chhH
Q 040540 341 PQLI 344 (669)
Q Consensus 341 ~~~~ 344 (669)
+..+
T Consensus 301 ~~~~ 304 (362)
T 3goz_A 301 SIPI 304 (362)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 4433
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-23 Score=220.57 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=136.2
Q ss_pred Cchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhh---cCCCccCHHHHHHHHHhHHhhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLY---SHNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~---~~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
..+|+.+++.++|+|++++++++.... ..++||||++++ +.+.+. .....+++.....++.|+++||+||
T Consensus 79 ~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~L 157 (394)
T 4e7w_A 79 KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPET-VYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYI 157 (394)
T ss_dssp CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEE-HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCcc-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999885432 367999999864 444433 1345689999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLM 573 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~ 573 (669)
|. .+|+|||+|+.. ......||+.|+|||++.+. .++.++||||+||++|
T Consensus 158 H~----~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ 233 (394)
T 4e7w_A 158 HS----IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMA 233 (394)
T ss_dssp HH----TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred HH----CCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 95 479999999531 11233589999999988764 5899999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhC-CC---------CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESL-PH---------RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||++|+.||..... ...+...++..- +. .......+.+.........+......+.+++.+||+.||.+
T Consensus 234 ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 312 (394)
T 4e7w_A 234 ELMQGQPLFPGESG-IDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSA 312 (394)
T ss_dssp HHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGG
T ss_pred HHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhh
Confidence 99999999975321 111222222110 00 00000000111000000011224457899999999999999
Q ss_pred CCCHHHHHH
Q 040540 644 RMHMTDAAA 652 (669)
Q Consensus 644 Rps~~~v~~ 652 (669)
|||+.|+++
T Consensus 313 R~t~~e~l~ 321 (394)
T 4e7w_A 313 RLTAIEALC 321 (394)
T ss_dssp SCCHHHHHT
T ss_pred CCCHHHHhc
Confidence 999999975
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-23 Score=221.22 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=111.2
Q ss_pred cCchhhhhhccc------cccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNV------RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l------~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|+.++..+ .|+|++++++.+......++||||+. ++|.+++.... ..+++..+..|+.++++||+|||
T Consensus 139 ~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH 217 (429)
T 3kvw_A 139 QAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH 217 (429)
T ss_dssp HHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344566666655 57799999999998889999999997 69999997643 35899999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.. +|+|||+|+.. .....+||+.|+|||++.+..++.++|||||||++|||+
T Consensus 218 ~~----~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell 293 (429)
T 3kvw_A 218 KN----RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELL 293 (429)
T ss_dssp HH----TEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHH
T ss_pred HC----CeecCCCCHHHeEEccCCCcceEEeecccceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHH
Confidence 54 79999999531 112335899999999999988999999999999999999
Q ss_pred hCCCCCCcC
Q 040540 577 TRKRPTDEM 585 (669)
Q Consensus 577 tg~~p~~~~ 585 (669)
||+.||...
T Consensus 294 tG~~pf~~~ 302 (429)
T 3kvw_A 294 TGYPLLPGE 302 (429)
T ss_dssp HSSCSSCCS
T ss_pred hCCCCCCCC
Confidence 999999753
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-23 Score=211.73 Aligned_cols=184 Identities=22% Similarity=0.238 Sum_probs=141.9
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.++.++. |||++++++++......++||||+++++|.+++... ..+++.....++.++++|++|||..
T Consensus 69 ~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---- 143 (298)
T 1phk_A 69 ATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK-VTLSEKETRKIMRALLEVICALHKL---- 143 (298)
T ss_dssp HHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4567888999996 999999999999888999999999999999999753 4689999999999999999999954
Q ss_pred CeeecCCCCcc------------------------cccccccccccCcccccc------CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGS------EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||++. ...++.++||||||+++|||+
T Consensus 144 ~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~ 223 (298)
T 1phk_A 144 NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLL 223 (298)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHH
T ss_pred CcccCCCCcceEEEcCCCcEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHH
Confidence 79999998531 112235899999999874 455889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||.... .......+....... .. +.....+..+.+++.+||+.||.+|||+.|+++
T Consensus 224 ~g~~p~~~~~--~~~~~~~~~~~~~~~----~~----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 224 AGSPPFWHRK--QMLMLRMIMSGNYQF----GS----------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HSSCSSCCSS--HHHHHHHHHHTCCCC----CT----------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HCCCCCcCcc--HHHHHHHHhcCCccc----Cc----------ccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 9999986532 111222221111100 00 011233456789999999999999999999975
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-23 Score=209.40 Aligned_cols=186 Identities=11% Similarity=0.080 Sum_probs=139.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|...+..++|+|++++++++...+..++||||+++++|.++++.. ....+..+|+.++++||+|||..
T Consensus 76 ~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH~~---- 148 (286)
T 3uqc_A 76 QETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAHRA---- 148 (286)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHC----
Confidence 45678889999999999999999999888899999999999999999642 34557888999999999999954
Q ss_pred CeeecCCCCcccc-----cccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVTQ-----TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP 601 (669)
Q Consensus 527 ~i~h~d~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~ 601 (669)
+|+|||+|+.... ...+++.+|++| ++.++|||||||++|||+||+.||.........
T Consensus 149 givH~Dikp~NIll~~~g~~kl~~~~~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~---------- 211 (286)
T 3uqc_A 149 GVALSIDHPSRVRVSIDGDVVLAYPATMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL---------- 211 (286)
T ss_dssp TCCCCCCSGGGEEEETTSCEEECSCCCCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS----------
T ss_pred CCccCCCCcccEEEcCCCCEEEEeccccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh----------
Confidence 7999999976432 223467788875 689999999999999999999999763321100
Q ss_pred CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 602 HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
......+....... .....+.+..+.+++.+||+.||++| |+.|+++.|+++...
T Consensus 212 ~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 212 APAERDTAGQPIEP---ADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAV 266 (286)
T ss_dssp EECCBCTTSCBCCH---HHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-
T ss_pred HHHHHHhccCCCCh---hhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhcc
Confidence 00000000000000 00112344568899999999999999 999999999998644
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=196.33 Aligned_cols=194 Identities=15% Similarity=0.183 Sum_probs=107.9
Q ss_pred CCCEEEccCCcCCccCCccccCCcccccccccccC-ccccCCcccCCCCCCCeeeccc-ccccccCCcccCCCCCCCEEE
Q 040540 100 RLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN-FTGPIPNSLFNLSRLEMLRAEF-NIIGGTIPSRIGNLRKLVNLG 177 (669)
Q Consensus 100 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~L~~L~~L~ 177 (669)
+|++|++++|++.+..+..|+++++|++|++++|+ +++..+..|.++++|++|++++ |.+.+..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55566666666655444455566666666666664 5544444555666666666665 555555555555666666666
Q ss_pred cccCCCcccCCccccCCCCCC---EEEccCC-CCCCCCCccccCCCCCc-EEEcccCCCccccchhhhccCCCCCeeecc
Q 040540 178 LWSCNLQGQIPTEIGSLQNLK---NLDLADN-KLSGLIPPTIFNISTMR-ILTLESNQLSGRLPSTIGHSLRNIEYLALS 252 (669)
Q Consensus 178 l~~n~l~~~~p~~~~~l~~L~---~L~l~~N-~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls 252 (669)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ .|++++|.++ .+|...+.. ++|++|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 66666554 443 55555555 6666666 55555444555566666 6666666655 455444432 556666666
Q ss_pred cCc-ccccCCccccCC-CCCCEEeCCCCCccccCccccCCCCCCCEEEcc
Q 040540 253 TNN-LIGKIPNSITNA-TKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVM 300 (669)
Q Consensus 253 ~n~-l~~~~p~~~~~l-~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 300 (669)
+|+ +.+..+..|..+ ++|+.|++++|.+.+..+. .+++|+.|++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~ 234 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR 234 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeecc
Confidence 663 554444555555 5666666666665532222 34455555554
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-23 Score=232.41 Aligned_cols=174 Identities=20% Similarity=0.165 Sum_probs=137.4
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|..++..+ +|++++.+++++...+..++||||+++|+|.++++.. ..+++..+..|+.+++.||+|||. .+
T Consensus 388 ~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~g 462 (674)
T 3pfq_A 388 TMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFFLQS----KG 462 (674)
T ss_dssp HHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----TS
T ss_pred HHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 44567777766 7999999999999888999999999999999999864 458999999999999999999995 48
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. ...+..||+.|||||++.+..|+.++|||||||++|||+||+.||
T Consensus 463 IiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf 542 (674)
T 3pfq_A 463 IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPF 542 (674)
T ss_dssp EECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCC
Confidence 9999999541 112346999999999999999999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.... ...+.+.+... . + ..+......+.+++.+|++.||++||++
T Consensus 543 ~~~~--~~~~~~~i~~~---~--------~-------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 543 EGED--EDELFQSIMEH---N--------V-------AYPKSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp CCSS--HHHHHHHHHSS---C--------C-------CCCTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred CCCC--HHHHHHHHHhC---C--------C-------CCCccCCHHHHHHHHHHccCCHHHCCCC
Confidence 7532 11122211111 0 0 0011234567899999999999999997
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-23 Score=220.61 Aligned_cols=197 Identities=21% Similarity=0.253 Sum_probs=137.7
Q ss_pred cCchhhhhhcccc-ccccceecccccccc--ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|+..+..+. |+|++++++++...+ ..++|||||+ |+|.++++. ..+++..+..++.|+++||+|||..
T Consensus 54 ~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~-- 128 (388)
T 3oz6_A 54 RTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYME-TDLHAVIRA--NILEPVHKQYVVYQLIKVIKYLHSG-- 128 (388)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECCS-EEHHHHHHH--TCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEecccC-cCHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 4557888888887 999999999986543 6799999998 699999975 3588899999999999999999954
Q ss_pred CCCeeecCCCCcc--------------c--------------------------------ccccccccccCccccccC-C
Q 040540 525 SAPIIHCEGEDSV--------------T--------------------------------QTTTMATIGYMAPEYGSE-G 557 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------~--------------------------------~~~~~gt~~y~aPE~~~~-~ 557 (669)
+|+|||+|+.. . ....+||+.|+|||++.+ .
T Consensus 129 --~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 206 (388)
T 3oz6_A 129 --GLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGST 206 (388)
T ss_dssp --TEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCC
T ss_pred --CEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCC
Confidence 79999999531 0 012368999999999876 6
Q ss_pred CcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHh-CCCC--ccccccc------------------cccch-
Q 040540 558 IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES-LPHR--LSEVVDT------------------NLVRE- 615 (669)
Q Consensus 558 ~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~-~~~~--~~~~~~~------------------~~~~~- 615 (669)
.++.++||||+||++|||++|+.||...... ..+...+... .|.. +..+..+ .....
T Consensus 207 ~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (388)
T 3oz6_A 207 KYTKGIDMWSLGCILGEILCGKPIFPGSSTM-NQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIF 285 (388)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCH
T ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhC
Confidence 6899999999999999999999999753211 1111111110 0100 0000000 00000
Q ss_pred ------hhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 616 ------EQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 616 ------~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
......+..+...+.+++.+||+.||++|||++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~ 328 (388)
T 3oz6_A 286 TKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALK 328 (388)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhC
Confidence 0000001133457889999999999999999999975
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-23 Score=213.81 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=139.6
Q ss_pred cCchhhhhhccccccccceecccccc--------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN--------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~--------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
.+..|+.++..++|+|++++++++.. ....++||||++ |++.+.+......+++.++..|+.++++||+||
T Consensus 62 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~L 140 (351)
T 3mi9_A 62 TALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE-HDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYI 140 (351)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEEEeccC-CCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999998865 345789999998 588888876666799999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-----------------------------cccccccccccCccccccC-CCcCccccchhhH
Q 040540 520 RHGHSSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYG 569 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G 569 (669)
|.. +|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||||
T Consensus 141 H~~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG 216 (351)
T 3mi9_A 141 HRN----KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAG 216 (351)
T ss_dssp HHT----TEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHH
T ss_pred HHC----CeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHH
Confidence 954 79999999531 0112357999999998876 4589999999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHH---hCCCC-cccccccc----c---cchhhhhhh---hHHHHHHHHHHHhh
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKE---SLPHR-LSEVVDTN----L---VREEQAFSA---KMDCLLSIMDLALD 635 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~---~~~~~-~~~~~~~~----~---~~~~~~~~~---~~~~~~~~~~l~~~ 635 (669)
|++|||+||+.||..... ......+.. ..+.. ....-... + ......... .......+.+++.+
T Consensus 217 ~il~ell~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 294 (351)
T 3mi9_A 217 CIMAEMWTRSPIMQGNTE--QHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDK 294 (351)
T ss_dssp HHHHHHHHSSCSCCCSSH--HHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHH
Confidence 999999999999976321 111111111 11111 11100000 0 000000000 00113457899999
Q ss_pred cccCCCCCCCCHHHHHH
Q 040540 636 CCMESPDKRMHMTDAAA 652 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~ 652 (669)
|++.||++|||+.|+++
T Consensus 295 ~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 295 LLVLDPAQRIDSDDALN 311 (351)
T ss_dssp HSCSSGGGSCCHHHHHT
T ss_pred HhcCChhhCCCHHHHhC
Confidence 99999999999999976
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-23 Score=216.47 Aligned_cols=133 Identities=19% Similarity=0.190 Sum_probs=109.7
Q ss_pred Cchhhhhhcccc-cc-----ccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhc
Q 040540 449 FDSECEVLRNVR-HR-----NLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 449 ~~~e~~~l~~l~-h~-----niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+..|...+..++ |+ +++++++++......++||||++ |+|.+++.... ..+++..+..++.+++.|+.|||.
T Consensus 97 ~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~ 175 (382)
T 2vx3_A 97 AQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT 175 (382)
T ss_dssp HHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 445666666664 33 48888999888889999999997 59999998643 458999999999999999999994
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
. ..+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+|
T Consensus 176 ~--~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt 253 (382)
T 2vx3_A 176 P--ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHT 253 (382)
T ss_dssp T--TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred C--CCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHh
Confidence 2 4689999999541 1122358999999999999889999999999999999999
Q ss_pred CCCCCCc
Q 040540 578 RKRPTDE 584 (669)
Q Consensus 578 g~~p~~~ 584 (669)
|+.||..
T Consensus 254 g~~pf~~ 260 (382)
T 2vx3_A 254 GEPLFSG 260 (382)
T ss_dssp SSCSSCC
T ss_pred CCCCCCC
Confidence 9999975
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-23 Score=214.07 Aligned_cols=194 Identities=18% Similarity=0.128 Sum_probs=136.7
Q ss_pred ccCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+..|+..+..++|||++++++++.... ..++||||++ |+|.+++.. .+++.....++.|+++||+|||
T Consensus 69 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH 144 (371)
T 2xrw_A 69 KRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLH 144 (371)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCS-EEHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEEcCC-CCHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999886654 5689999998 588888863 3788899999999999999999
Q ss_pred cCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.. +|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||+
T Consensus 145 ~~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~ 220 (371)
T 2xrw_A 145 SA----GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 220 (371)
T ss_dssp HT----TCCCSCCCGGGEEECTTSCEEECCCCC----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred HC----CeecccCCHHHEEEcCCCCEEEEEeecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHH
Confidence 54 79999999541 012235899999999999888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcc--------------------------ccccccccchhhhhhhhHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLS--------------------------EVVDTNLVREEQAFSAKMDCLLSIM 630 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (669)
||+.||..... ......+......... ......... ............+.
T Consensus 221 ~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 296 (371)
T 2xrw_A 221 KGGVLFPGTDH--IDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFP--ADSEHNKLKASQAR 296 (371)
T ss_dssp HSSCSSCCSSH--HHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSC--CSSHHHHHHHHHHH
T ss_pred hCCCCCCCCCH--HHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCc--ccccccccccHHHH
Confidence 99999975321 1111111110000000 000000000 00011234466789
Q ss_pred HHHhhcccCCCCCCCCHHHHHH
Q 040540 631 DLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 631 ~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+++.+|++.||++|||++|+++
T Consensus 297 ~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 297 DLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp HHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHCcCChhhCCCHHHHhC
Confidence 9999999999999999999986
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-23 Score=220.03 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=141.3
Q ss_pred ccCchhhhhhcccc--------ccccceeccccc----cccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHH
Q 040540 447 RSFDSECEVLRNVR--------HRNLIKIISSCS----NPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVG 513 (669)
Q Consensus 447 ~~~~~e~~~l~~l~--------h~niv~l~~~~~----~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~ 513 (669)
+.+..|+.++..++ |+|++++++.+. .....++||||+ ++++.+++... ...+++.....|+.|++
T Consensus 78 ~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~ 156 (397)
T 1wak_A 78 ETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVL 156 (397)
T ss_dssp HHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 34567888888876 788999999887 556789999999 46676666543 35689999999999999
Q ss_pred hhhhhhhcCCCCCCeeecCCCCccc-------------------------------------------------------
Q 040540 514 SALEYLRHGHSSAPIIHCEGEDSVT------------------------------------------------------- 538 (669)
Q Consensus 514 ~~l~~lh~~~~~~~i~h~d~~~~~~------------------------------------------------------- 538 (669)
+||+|||.. .+|+|||+|+...
T Consensus 157 ~aL~~lH~~---~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
T 1wak_A 157 QGLDYLHTK---CRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKL 233 (397)
T ss_dssp HHHHHHHHT---TCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGC
T ss_pred HHHHHHHHh---CCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCccccccccccccccccccc
Confidence 999999952 2799999995411
Q ss_pred ----------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCcc-----HHHHHH
Q 040540 539 ----------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMS-----LRRWVK 597 (669)
Q Consensus 539 ----------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~-----l~~~~~ 597 (669)
.....||+.|+|||++.+..++.++|||||||++|||+||+.||......... +.....
T Consensus 234 ~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 313 (397)
T 1wak_A 234 KVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIE 313 (397)
T ss_dssp CEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHH
T ss_pred ceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHH
Confidence 01124799999999999888999999999999999999999999754322211 111111
Q ss_pred H--hCCCC-----------------ccccccc---cccc-hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 598 E--SLPHR-----------------LSEVVDT---NLVR-EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 598 ~--~~~~~-----------------~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
. ..+.. .....+. .+.. .......+.+....+.+++.+||+.||++|||+.||++
T Consensus 314 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 314 LLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp HHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred hcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 0 00000 0000000 0000 00011224566778999999999999999999999975
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-23 Score=216.55 Aligned_cols=200 Identities=17% Similarity=0.148 Sum_probs=140.0
Q ss_pred ccCchhhhhhccccccccceecccccc-----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+..|+.++..++|||++++++++.. ....++||||++ |++.+++......+++..+..++.++++|+.|||.
T Consensus 74 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~ 152 (362)
T 3pg1_A 74 KRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHE 152 (362)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999998843 335689999998 79999998766679999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHH
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~ 576 (669)
. +++|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+
T Consensus 153 ~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~ 228 (362)
T 3pg1_A 153 A----GVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMF 228 (362)
T ss_dssp T----TCCCCCCCGGGEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHH
T ss_pred C----cCEecCCChHHEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHH
Confidence 4 79999999541 1112358899999998876 66899999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcc-----------ccccccccchh--hhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLS-----------EVVDTNLVREE--QAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||+.||...... ..+...+......... +.+........ ............+.+++.+|++.||++
T Consensus 229 ~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 307 (362)
T 3pg1_A 229 NRKALFRGSTFY-NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQR 307 (362)
T ss_dssp HSSCSCCCSSHH-HHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGG
T ss_pred hCCCCCCCCCHH-HHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhh
Confidence 999999753211 1111111111100000 00000000000 000011223456889999999999999
Q ss_pred CCCHHHHHH
Q 040540 644 RMHMTDAAA 652 (669)
Q Consensus 644 Rps~~~v~~ 652 (669)
|||+.|+++
T Consensus 308 Rpt~~ell~ 316 (362)
T 3pg1_A 308 RISTEQALR 316 (362)
T ss_dssp SCCHHHHHT
T ss_pred CCCHHHHHc
Confidence 999999986
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-23 Score=209.67 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=141.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|||++++++++......++||||+++++|.+++... ..+++.....++.++++|+.|||..
T Consensus 66 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---- 140 (287)
T 2wei_A 66 STILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHKH---- 140 (287)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667899999999999999999999888899999999999999998753 3589999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++... .....||+.|+|||...+. ++.++||||||+++|||++|+
T Consensus 141 ~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~ 219 (287)
T 2wei_A 141 NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGT 219 (287)
T ss_dssp TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSS
T ss_pred CeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCC
Confidence 799999985310 0112378899999988654 889999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+...... . . .+.....+..+.+++.+|+..||++|||+.|+++
T Consensus 220 ~p~~~~~--~~~~~~~~~~~~~~-~------~-------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 220 PPFYGKN--EYDILKRVETGKYA-F------D-------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp CSSCCSS--HHHHHHHHHHCCCC-C------C-------SGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHcCCCC-C------C-------chhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 9987532 11222222211100 0 0 0011223456789999999999999999999986
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=206.63 Aligned_cols=226 Identities=19% Similarity=0.216 Sum_probs=183.4
Q ss_pred CCCCEEEccCCcCCcc-CCc--cccCCcccccccccccCccccCCccc--CCCCCCCeeecccccccccCC----cccCC
Q 040540 99 RRLRVMSLAYNKLSGS-FPS--WIGVLSKLRILRLDYNNFTGPIPNSL--FNLSRLEMLRAEFNIIGGTIP----SRIGN 169 (669)
Q Consensus 99 ~~L~~L~L~~n~l~~~-~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~ 169 (669)
..++.|.+.++.+... +.. .+..+++|++|+|++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578888888877531 111 12335679999999999999999988 899999999999999987665 44567
Q ss_pred CCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC--C--CccccCCCCCcEEEcccCCCccccch---hhhcc
Q 040540 170 LRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL--I--PPTIFNISTMRILTLESNQLSGRLPS---TIGHS 242 (669)
Q Consensus 170 L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~--p~~~~~l~~L~~L~l~~n~l~~~~p~---~~~~~ 242 (669)
+++|++|++++|.+.+..|..|+.+++|++|++++|.+.+. + +..+..+++|++|++++|.++ .++. .+...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 99999999999999988889999999999999999998752 2 223468899999999999996 3333 34446
Q ss_pred CCCCCeeecccCcccccCCccccCC---CCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccc
Q 040540 243 LRNIEYLALSTNNLIGKIPNSITNA---TKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319 (669)
Q Consensus 243 l~~L~~L~ls~n~l~~~~p~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 319 (669)
+++|++|++++|++.+..|..+..+ ++|+.|++++|.+. .+|..+. ++|+.|++++|++++.+ .
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~----------~ 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP----------Q 289 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC----------C
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc----------h
Confidence 8999999999999998888777776 69999999999998 5676664 79999999999998752 2
Q ss_pred cCCCCCCCEEECcCCCCcc
Q 040540 320 LTNCRNLSNLALASNPLGG 338 (669)
Q Consensus 320 l~~l~~L~~L~l~~n~l~~ 338 (669)
+..+++|+.|++++|+++.
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 3567899999999999864
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-23 Score=214.97 Aligned_cols=182 Identities=18% Similarity=0.184 Sum_probs=118.0
Q ss_pred hhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 455 VLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 455 ~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
.+....|+|++++++++.. ....++||||+++|+|.+++.... ..+++.++..++.++++||.|||.. +++
T Consensus 75 ~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~----~iv 150 (336)
T 3fhr_A 75 HWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH----NIA 150 (336)
T ss_dssp HHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT----TEE
T ss_pred HHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC----Cee
Confidence 3456689999999998865 445789999999999999998643 3689999999999999999999954 799
Q ss_pred ecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 530 HCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 530 h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
|+|+|+... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus 151 H~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 230 (336)
T 3fhr_A 151 HRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFY 230 (336)
T ss_dssp CSCCSGGGEEESCSSTTCCEEECCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred cCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 999985310 112247899999999988889999999999999999999999996
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
........ ............ ... .+.+...+..+.+++.+|++.||.+|||+.|+++
T Consensus 231 ~~~~~~~~--~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 231 SNTGQAIS--PGMKRRIRLGQY-----GFP-----NPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp ---------------------------CCC-----TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred Cccchhhh--hhHHHhhhcccc-----ccC-----chhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 53221110 000000000000 000 0111234456789999999999999999999987
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-23 Score=221.08 Aligned_cols=184 Identities=18% Similarity=0.216 Sum_probs=132.3
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCcc------CHHHHHHHHHhHHhhhhhhhc
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL------DILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l------~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+..|+.++..+ +|||++++++++......++|||||. |+|.+++....... .+..+..|+.|++.||+|||.
T Consensus 55 ~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~ 133 (434)
T 2rio_A 55 ALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS 133 (434)
T ss_dssp HHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 45688888776 89999999999988889999999996 69999998643211 222356799999999999995
Q ss_pred CCCCCCeeecCCCCccc------------------------------------------ccccccccccCccccccC---
Q 040540 522 GHSSAPIIHCEGEDSVT------------------------------------------QTTTMATIGYMAPEYGSE--- 556 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~~------------------------------------------~~~~~gt~~y~aPE~~~~--- 556 (669)
.+|+|||+|+... .....||+.|+|||++.+
T Consensus 134 ----~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~ 209 (434)
T 2rio_A 134 ----LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNN 209 (434)
T ss_dssp ----TTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCT
T ss_pred ----CCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccc
Confidence 4799999984310 011258999999998865
Q ss_pred ----CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHH
Q 040540 557 ----GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMD 631 (669)
Q Consensus 557 ----~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (669)
..++.++|||||||++|||+| |+.||...... ........... . ... ..........+.+
T Consensus 210 ~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~---~~~i~~~~~~~--~-----~~~-----~~~~~~~~~~~~~ 274 (434)
T 2rio_A 210 LQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSR---ESNIIRGIFSL--D-----EMK-----CLHDRSLIAEATD 274 (434)
T ss_dssp TSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTH---HHHHHHTCCCC--C-----CCT-----TCCCHHHHHHHHH
T ss_pred cccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhh---HHHHhcCCCCc--c-----ccc-----ccccccchHHHHH
Confidence 568999999999999999999 99998653221 11122211110 0 000 0012345677899
Q ss_pred HHhhcccCCCCCCCCHHHHHH
Q 040540 632 LALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 632 l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++.+||+.||.+|||+.||++
T Consensus 275 li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 275 LISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHhhCChhhCCCHHHHHh
Confidence 999999999999999999985
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-24 Score=222.05 Aligned_cols=235 Identities=17% Similarity=0.196 Sum_probs=147.4
Q ss_pred CCCccceeeCCCCCCEEEEEcCCCCCcccccccccCC--CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCcc-
Q 040540 38 ICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNL--SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGS- 114 (669)
Q Consensus 38 ~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~- 114 (669)
+..|.++.|+. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 33698887753 45788999988776 3445666 7889999999988876665 55788888888888888765
Q ss_pred CCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc-cccc-cCCcccCCCCCCCEEEcccC-CCccc-CCcc
Q 040540 115 FPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN-IIGG-TIPSRIGNLRKLVNLGLWSC-NLQGQ-IPTE 190 (669)
Q Consensus 115 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~-~~p~~~~~L~~L~~L~l~~n-~l~~~-~p~~ 190 (669)
+|..+..+++|++|+|++|.+++..|..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+++. ++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 7777888888888888888887777777777777777777777 4554 24555566666666666666 55543 3444
Q ss_pred ccCCC-CCCEEEccCC--CCC-CCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccC
Q 040540 191 IGSLQ-NLKNLDLADN--KLS-GLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266 (669)
Q Consensus 191 ~~~l~-~L~~L~l~~N--~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 266 (669)
+..++ +|++|++++| .++ +.+|..+..+++|++|++++|.. +++..+..+..
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~------------------------l~~~~~~~l~~ 245 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM------------------------LKNDCFQEFFQ 245 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT------------------------CCGGGGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc------------------------CCHHHHHHHhC
Confidence 55555 6666666665 333 22333444444444444444441 33334444444
Q ss_pred CCCCCEEeCCCCC-ccccCccccCCCCCCCEEEccCC
Q 040540 267 ATKLIGLDLGFNS-FSGHIPNTFGNLRHLSVLNVMMN 302 (669)
Q Consensus 267 l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~l~~N 302 (669)
+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 5555555555553 11111123455566666666555
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-23 Score=216.77 Aligned_cols=197 Identities=20% Similarity=0.213 Sum_probs=134.0
Q ss_pred ccCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+.+|+..++.++|||++++++++... ...++|+||+ +++|.++++. ..+++..+..++.|+++||+|||
T Consensus 73 ~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH 149 (367)
T 2fst_X 73 KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIH 149 (367)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999987643 4568999999 6899999875 45899999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 521 HGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
. .+|+|||+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||++
T Consensus 150 ~----~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~ 225 (367)
T 2fst_X 150 S----ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT 225 (367)
T ss_dssp H----TTCCCCCCCGGGEEECTTCCEEECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHH
T ss_pred H----CCeeeCCCCHhhEEECCCCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHh
Confidence 5 479999999541 1123368999999999876 678999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccc-----------cccc-hhhhh-hhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDT-----------NLVR-EEQAF-SAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~-~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|+.||.... .......+.........+.+.. .+.. ....+ .........+.+++.+|++.||++|
T Consensus 226 g~~pf~~~~--~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R 303 (367)
T 2fst_X 226 GRTLFPGTD--HIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKR 303 (367)
T ss_dssp SSCSCCCSS--HHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGS
T ss_pred CCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccC
Confidence 999997532 1111111111110000000000 0000 00000 0011234567899999999999999
Q ss_pred CCHHHHHH
Q 040540 645 MHMTDAAA 652 (669)
Q Consensus 645 ps~~~v~~ 652 (669)
||+.|+++
T Consensus 304 ~t~~e~L~ 311 (367)
T 2fst_X 304 ITAAQALA 311 (367)
T ss_dssp CCHHHHHT
T ss_pred cCHHHHhc
Confidence 99999976
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-24 Score=225.21 Aligned_cols=245 Identities=17% Similarity=0.196 Sum_probs=122.3
Q ss_pred ccccccCCCCCCEEeCCCCcCcccCC----cccCCCCCCCEEEccCCc---CCccCCccc-------cCCcccccccccc
Q 040540 67 IPLHFGNLSFLVSLDISENNFHGHLP----KELGQLRRLRVMSLAYNK---LSGSFPSWI-------GVLSKLRILRLDY 132 (669)
Q Consensus 67 ~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~L~~ 132 (669)
++..+..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34455666777777777777765433 335567777777777753 334445443 4556666666666
Q ss_pred cCccc----cCCcccCCCCCCCeeecccccccccCCcccC----CC---------CCCCEEEcccCCCc-ccCC---ccc
Q 040540 133 NNFTG----PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIG----NL---------RKLVNLGLWSCNLQ-GQIP---TEI 191 (669)
Q Consensus 133 n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~L---------~~L~~L~l~~n~l~-~~~p---~~~ 191 (669)
|.+++ .+|..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++ +.+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66654 3444555555555555555555432222222 22 45555555555544 2222 233
Q ss_pred cCCCCCCEEEccCCCCC--C---CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccc----ccCCc
Q 040540 192 GSLQNLKNLDLADNKLS--G---LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLI----GKIPN 262 (669)
Q Consensus 192 ~~l~~L~~L~l~~N~l~--~---~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~----~~~p~ 262 (669)
..+++|++|++++|.++ | ..|..+..++ +|++|+|++|.++ +.+|.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-------------------------~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-------------------------ELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-------------------------TCCEEECCSSCCHHHHHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-------------------------CccEEECcCCCCCcHHHHHHHH
Confidence 34445555555555444 1 1222334444 4444444444443 23344
Q ss_pred cccCCCCCCEEeCCCCCcccc----Ccccc--CCCCCCCEEEccCCccccCCCCCccccccccc-CCCCCCCEEECcCCC
Q 040540 263 SITNATKLIGLDLGFNSFSGH----IPNTF--GNLRHLSVLNVMMNNLTTESSSADQWSFLSSL-TNCRNLSNLALASNP 335 (669)
Q Consensus 263 ~~~~l~~L~~L~ls~n~l~~~----~p~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~n~ 335 (669)
.+..+++|+.|++++|.+.+. ++..+ +.+++|+.|++++|.++.... ..+...+ .++++|+.|++++|+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~----~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV----RTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH----HHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH----HHHHHHHHhcCCCceEEEccCCc
Confidence 444455555555555555433 33333 225556666666665543100 0011122 335666777777777
Q ss_pred Ccccc
Q 040540 336 LGGIL 340 (669)
Q Consensus 336 l~~~~ 340 (669)
+++..
T Consensus 315 l~~~~ 319 (386)
T 2ca6_A 315 FSEED 319 (386)
T ss_dssp SCTTS
T ss_pred CCcch
Confidence 66554
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-23 Score=210.87 Aligned_cols=199 Identities=22% Similarity=0.252 Sum_probs=139.4
Q ss_pred cCchhhhhhccc---cccccceeccccc-----cccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhh
Q 040540 448 SFDSECEVLRNV---RHRNLIKIISSCS-----NPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 448 ~~~~e~~~l~~l---~h~niv~l~~~~~-----~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~ 518 (669)
.+..|+..+..+ +|||++++++++. .....++||||++ |+|.+++.... ..+++..+..++.++++||+|
T Consensus 57 ~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~ 135 (326)
T 1blx_A 57 STIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDF 135 (326)
T ss_dssp THHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Confidence 344567666665 8999999999886 4567789999998 69999997643 348999999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLME 574 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~e 574 (669)
||.. +++|+|+++.. ......||+.|+|||++.+..++.++|||||||++||
T Consensus 136 lH~~----gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ 211 (326)
T 1blx_A 136 LHSH----RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAE 211 (326)
T ss_dssp HHHT----TCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHH
T ss_pred HHHC----CceeccCCHHHeEEcCCCCEEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHH
Confidence 9954 79999998531 0122358999999999988889999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHh-CCC--Ccccccc-c--ccc--chhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKES-LPH--RLSEVVD-T--NLV--REEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~-~~~--~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
|+||+.||..... ...+...+... .+. .+..... + ... ..........+....+.+++.+||+.||++|||
T Consensus 212 l~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 290 (326)
T 1blx_A 212 MFRRKPLFRGSSD-VDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS 290 (326)
T ss_dssp HHHSSCSCCCSSH-HHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCC
T ss_pred HHcCCCCCCCCCH-HHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCC
Confidence 9999999975321 11112222111 110 0000000 0 000 000000011234456789999999999999999
Q ss_pred HHHHHH
Q 040540 647 MTDAAA 652 (669)
Q Consensus 647 ~~~v~~ 652 (669)
+.|+++
T Consensus 291 ~~e~l~ 296 (326)
T 1blx_A 291 AYSALS 296 (326)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999985
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-23 Score=213.74 Aligned_cols=184 Identities=19% Similarity=0.219 Sum_probs=136.2
Q ss_pred ccCchhhhhhccc-cccccceecccccc------ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhh
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
..+..|+..+..+ +|+|++++++++.. ....++||||+++|+|.+++... ...+++.....++.+++.||+|
T Consensus 65 ~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~ 144 (326)
T 2x7f_A 65 EEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSH 144 (326)
T ss_dssp HHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Confidence 3466788888888 79999999998865 45678999999999999999864 2468888999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc-------------------------cccccccccccCcccccc-----CCCcCccccchhh
Q 040540 519 LRHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSY 568 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~ 568 (669)
||.. +++|+|+++.. ......||+.|+|||++. ...++.++|||||
T Consensus 145 lH~~----~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~sl 220 (326)
T 2x7f_A 145 LHQH----KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSL 220 (326)
T ss_dssp HHHT----TCCCCCCSGGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHH
T ss_pred HHHC----CccccCCcHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHH
Confidence 9954 79999998531 011235899999999886 4568899999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
||++|||+||+.||..... ......+....... .. ....+..+.+++.+||..||.+||++.
T Consensus 221 G~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~---~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~ 282 (326)
T 2x7f_A 221 GITAIEMAEGAPPLCDMHP--MRALFLIPRNPAPR---LK-------------SKKWSKKFQSFIESCLVKNHSQRPATE 282 (326)
T ss_dssp HHHHHHHHHSSCTTTTSCH--HHHHHHHHHSCCCC---CS-------------CSCSCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred HHHHHHHHhCCCCCCCCcH--HHHHHHhhcCcccc---CC-------------ccccCHHHHHHHHHHhccChhhCCCHH
Confidence 9999999999999865321 11111111111100 00 011234578999999999999999999
Q ss_pred HHHH
Q 040540 649 DAAA 652 (669)
Q Consensus 649 ~v~~ 652 (669)
++++
T Consensus 283 ~ll~ 286 (326)
T 2x7f_A 283 QLMK 286 (326)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9987
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-23 Score=213.23 Aligned_cols=198 Identities=16% Similarity=0.187 Sum_probs=141.8
Q ss_pred cCchhhhhhccccccc------cceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNVRHRN------LIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|+..+..++|++ ++++++++......++||||+ +++|.+++...+ ..+++.....++.|+++||+|||
T Consensus 57 ~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH 135 (339)
T 1z57_A 57 AARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH 135 (339)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4556888888887765 889999998888999999999 799999998643 36889999999999999999999
Q ss_pred cCCCCCCeeecCCCCccc-----------------------------------------ccccccccccCccccccCCCc
Q 040540 521 HGHSSAPIIHCEGEDSVT-----------------------------------------QTTTMATIGYMAPEYGSEGIV 559 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~~-----------------------------------------~~~~~gt~~y~aPE~~~~~~~ 559 (669)
. .+++|+|+|+... .....||+.|+|||++.+..+
T Consensus 136 ~----~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~ 211 (339)
T 1z57_A 136 S----NKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGW 211 (339)
T ss_dssp H----TTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCC
T ss_pred H----CCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCC
Confidence 5 4799999985311 012247999999999998889
Q ss_pred CccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHh---CCCCcc------cccc-------c----------ccc
Q 040540 560 SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES---LPHRLS------EVVD-------T----------NLV 613 (669)
Q Consensus 560 ~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~---~~~~~~------~~~~-------~----------~~~ 613 (669)
+.++|||||||++|||+||+.||..... ......+... .+.... .... . ...
T Consensus 212 ~~~~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (339)
T 1z57_A 212 SQPCDVWSIGCILIEYYLGFTVFPTHDS--KEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACK 289 (339)
T ss_dssp CTHHHHHHHHHHHHHHHHSSCSCCCSCH--HHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCC
T ss_pred CcchhhHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCc
Confidence 9999999999999999999999975321 1111111111 110000 0000 0 000
Q ss_pred chhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 614 REEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...............+.+++.+||+.||++|||+.|+++
T Consensus 290 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 290 PLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp CGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred chhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence 000000112345677899999999999999999999975
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-23 Score=211.53 Aligned_cols=183 Identities=20% Similarity=0.296 Sum_probs=137.1
Q ss_pred ccCchhhhhhcccc--ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVR--HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+..+..++ |+|++++++++......++||| +.+++|.+++... ..+++..+..++.++++||.|||..
T Consensus 71 ~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-- 146 (313)
T 3cek_A 71 DSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQH-- 146 (313)
T ss_dssp HHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-cCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC--
Confidence 45677899999887 4999999999999889999999 5678999999864 4688999999999999999999954
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccC-----------CCcCccccchh
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE-----------GIVSAKCDVYS 567 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s 567 (669)
+++|+|+++.. ......||+.|+|||++.+ ..++.++||||
T Consensus 147 --~ivH~dlkp~NIl~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~s 224 (313)
T 3cek_A 147 --GIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 224 (313)
T ss_dssp --TCCCCCCCGGGEEEETTEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHH
T ss_pred --CceecCCCcccEEEECCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHH
Confidence 79999999541 0112358999999998765 46888999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|||++|||++|+.||.........+.... ...... .. +......+.+++.+||+.||.+||++
T Consensus 225 lG~il~el~~g~~pf~~~~~~~~~~~~~~----~~~~~~----~~---------~~~~~~~l~~li~~~l~~dp~~Rps~ 287 (313)
T 3cek_A 225 LGCILYYMTYGKTPFQQIINQISKLHAII----DPNHEI----EF---------PDIPEKDLQDVLKCCLKRDPKQRISI 287 (313)
T ss_dssp HHHHHHHHHHSSCTTTTCCSHHHHHHHHH----CTTSCC----CC---------CCCSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHH----hccccc----CC---------cccchHHHHHHHHHHccCCcccCcCH
Confidence 99999999999999975322111111111 110000 00 01112457899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 288 ~ell~ 292 (313)
T 3cek_A 288 PELLA 292 (313)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99986
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-23 Score=214.46 Aligned_cols=197 Identities=20% Similarity=0.166 Sum_probs=139.1
Q ss_pred ccCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+..|+.++..++|||++++++++... ...++||||+. |+|.+++.. ..+++..+..|+.++++||+|||.
T Consensus 70 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L~~~l~~--~~~~~~~~~~i~~qi~~aL~~LH~ 146 (364)
T 3qyz_A 70 QRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDLYKLLKT--QHLSNDHICYFLYQILRGLKYIHS 146 (364)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcccC-cCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999999999999988654 35689999998 699999975 348999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc----------------------------cccccccccccCccccccC-CCcCccccchhhHHHH
Q 040540 522 GHSSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLL 572 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil 572 (669)
. +|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++
T Consensus 147 ~----~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il 222 (364)
T 3qyz_A 147 A----NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCIL 222 (364)
T ss_dssp T----TEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHH
T ss_pred C----CeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHH
Confidence 4 79999999531 0122368999999998655 4589999999999999
Q ss_pred HHHHhCCCCCCcCCCCCccHHHHHHHhCCCCcccccccc-----------cc--chhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 573 METFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTN-----------LV--REEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
|||+||+.||..... ......+.........+.+... .. ...+...........+.+++.+|++.
T Consensus 223 ~ell~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~ 300 (364)
T 3qyz_A 223 AEMLSNRPIFPGKHY--LDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 300 (364)
T ss_dssp HHHHHSSCSSCCSSG--GGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCS
T ss_pred HHHHHCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCC
Confidence 999999999976322 1121111111100000000000 00 00000000112345688999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
||++|||+.|+++
T Consensus 301 dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 301 NPHKRIEVEQALA 313 (364)
T ss_dssp STTTSCCHHHHHT
T ss_pred ChhhCCCHHHHhc
Confidence 9999999999976
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-23 Score=208.06 Aligned_cols=181 Identities=21% Similarity=0.255 Sum_probs=135.0
Q ss_pred ccCchhhhhhccccccccceeccccc--cccccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS--NPDFKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+..+..++|+|++++++++. .....++||||++++ +.+++.. ....+++.....++.++++|++|||..
T Consensus 51 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~- 128 (305)
T 2wtk_C 51 ANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ- 128 (305)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC-
Confidence 35678999999999999999999884 455779999999976 7777754 344689999999999999999999954
Q ss_pred CCCCeeecCCCCcc---------------------------cccccccccccCccccccCCC--cCccccchhhHHHHHH
Q 040540 524 SSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGI--VSAKCDVYSYGVLLME 574 (669)
Q Consensus 524 ~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gvil~e 574 (669)
+++|+|+++.. ......||+.|+|||+..+.. ++.++|||||||++||
T Consensus 129 ---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~ 205 (305)
T 2wtk_C 129 ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYN 205 (305)
T ss_dssp ---TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHH
T ss_pred ---CeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHH
Confidence 79999998531 001234899999999987643 4789999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|++|+.||.... ...+...+...... + +......+.+++.+||..||++|||+.|+++
T Consensus 206 l~~g~~p~~~~~--~~~~~~~i~~~~~~---------~---------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 263 (305)
T 2wtk_C 206 ITTGLYPFEGDN--IYKLFENIGKGSYA---------I---------PGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQ 263 (305)
T ss_dssp HHHSSCSCCCSS--HHHHHHHHHHCCCC---------C---------CSSSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HHhCCCCCCCch--HHHHHHHHhcCCCC---------C---------CCccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 999999987521 11111111111100 0 1122345679999999999999999999986
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-23 Score=219.90 Aligned_cols=126 Identities=20% Similarity=0.281 Sum_probs=103.4
Q ss_pred ccCchhhhhhccccccccceecccccc-----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+.+|+.++..++|+||+++++++.. ....++||||+. |+|.++++. ...+++.....|+.|+++||+|||.
T Consensus 97 ~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH~ 174 (458)
T 3rp9_A 97 KRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD-SDFKKLFRT-PVYLTELHIKTLLYNLLVGVKYVHS 174 (458)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCCS-EEHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEeccc-cchhhhccc-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 456689999999999999999998844 346799999985 799999975 4568999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc----------------------------------------------------cccccccccccC
Q 040540 522 GHSSAPIIHCEGEDSV----------------------------------------------------TQTTTMATIGYM 549 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------------------------------------~~~~~~gt~~y~ 549 (669)
. +|+|||+|+.. ..+..+||+.|+
T Consensus 175 ~----~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~ 250 (458)
T 3rp9_A 175 A----GILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYR 250 (458)
T ss_dssp T----TCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTC
T ss_pred C----CcCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCccccccc
Confidence 4 79999999530 011235799999
Q ss_pred ccccc-cCCCcCccccchhhHHHHHHHHhC
Q 040540 550 APEYG-SEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 550 aPE~~-~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
|||++ ....|+.++|||||||++|||+||
T Consensus 251 aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 251 APELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp CHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 99976 456699999999999999999994
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=215.61 Aligned_cols=200 Identities=17% Similarity=0.155 Sum_probs=135.5
Q ss_pred cCchhhhhhccccccccceeccccc--cccccceeeccCCCCChHHhhhcC--------CCccCHHHHHHHHHhHHhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCS--NPDFKALVLEFMPNGSLEKWLYSH--------NYFLDILERLNIMIDVGSALE 517 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~ey~~~g~L~~~l~~~--------~~~l~~~~~~~i~~~i~~~l~ 517 (669)
.+.+|+.+++.++|||++++++++. .....++||||+. |+|.+++... ...+++..+..|+.+++.||+
T Consensus 64 ~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~ 142 (405)
T 3rgf_A 64 SACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIH 142 (405)
T ss_dssp HHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999984 4667899999997 5888888631 224889999999999999999
Q ss_pred hhhcCCCCCCeeecCCCCccc--------------------------------ccccccccccCccccccC-CCcCcccc
Q 040540 518 YLRHGHSSAPIIHCEGEDSVT--------------------------------QTTTMATIGYMAPEYGSE-GIVSAKCD 564 (669)
Q Consensus 518 ~lh~~~~~~~i~h~d~~~~~~--------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~D 564 (669)
|||.. +|+|||+|+... .....||+.|+|||++.+ ..++.++|
T Consensus 143 ~LH~~----~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~D 218 (405)
T 3rgf_A 143 YLHAN----WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAID 218 (405)
T ss_dssp HHHHT----TCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHH
T ss_pred HHHhC----CEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhh
Confidence 99954 799999985310 012357999999999877 45899999
Q ss_pred chhhHHHHHHHHhCCCCCCcCCCCC--------ccHHHHHHHh-CCCC--ccccccc--------cccchhhhhhh----
Q 040540 565 VYSYGVLLMETFTRKRPTDEMFTGE--------MSLRRWVKES-LPHR--LSEVVDT--------NLVREEQAFSA---- 621 (669)
Q Consensus 565 v~s~Gvil~el~tg~~p~~~~~~~~--------~~l~~~~~~~-~~~~--~~~~~~~--------~~~~~~~~~~~---- 621 (669)
||||||++|||+||+.||.....+. ..+...+... .+.. +..+..- ...........
T Consensus 219 iwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (405)
T 3rgf_A 219 IWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKY 298 (405)
T ss_dssp HHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhh
Confidence 9999999999999999996532210 1111111111 1110 1100000 00000000000
Q ss_pred ----hHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 622 ----KMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 622 ----~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.......+.+++.+|++.||.+|||++|+++
T Consensus 299 ~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~ 333 (405)
T 3rgf_A 299 MEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ 333 (405)
T ss_dssp HHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 0001346789999999999999999999976
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=211.79 Aligned_cols=201 Identities=16% Similarity=0.185 Sum_probs=139.5
Q ss_pred cCchhhhhhcccc-----------ccccceecccccccc----ccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHh
Q 040540 448 SFDSECEVLRNVR-----------HRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMID 511 (669)
Q Consensus 448 ~~~~e~~~l~~l~-----------h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~ 511 (669)
.+..|+..+..+. |+|++++++++.... ..++||||+ +++|.+++... ...+++.....|+.+
T Consensus 61 ~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~q 139 (373)
T 1q8y_A 61 AAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQ 139 (373)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHH
Confidence 3456777776665 899999999887543 678999999 89999999763 345899999999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
++.||+|||.. .+|+|+|+|+... .....||+.|+|||++.+..++.++
T Consensus 140 i~~aL~~lH~~---~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~ 216 (373)
T 1q8y_A 140 LLLGLDYMHRR---CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGA 216 (373)
T ss_dssp HHHHHHHHHHT---TCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHH
T ss_pred HHHHHHHHHhc---CCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchH
Confidence 99999999952 2799999995410 1223589999999999988899999
Q ss_pred cchhhHHHHHHHHhCCCCCCcCCCCC-----ccHHHHHHHh--CCCC-----------------cccccccccc---c-h
Q 040540 564 DVYSYGVLLMETFTRKRPTDEMFTGE-----MSLRRWVKES--LPHR-----------------LSEVVDTNLV---R-E 615 (669)
Q Consensus 564 Dv~s~Gvil~el~tg~~p~~~~~~~~-----~~l~~~~~~~--~~~~-----------------~~~~~~~~~~---~-~ 615 (669)
|||||||++|||+||+.||....... ..+...+... .|.. ...+...... . .
T Consensus 217 Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (373)
T 1q8y_A 217 DIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVL 296 (373)
T ss_dssp HHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhh
Confidence 99999999999999999997532111 1111111100 0000 0000000000 0 0
Q ss_pred hhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 616 EQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 616 ~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
......+......+.+++.+||+.||++|||++|+++
T Consensus 297 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 297 TEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 333 (373)
T ss_dssp HHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred hhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhh
Confidence 0111223567788999999999999999999999976
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-23 Score=213.32 Aligned_cols=197 Identities=18% Similarity=0.164 Sum_probs=139.2
Q ss_pred ccCchhhhhhccccccccceecccccccccc------ceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFK------ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~------~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+..|+..+..++|||++++++++...... ++||||+. ++|.+++.. .+++..+..++.++++|++|||
T Consensus 86 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH 161 (371)
T 4exu_A 86 KRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIH 161 (371)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999998776544 89999998 689888853 3899999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 521 HGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
.. +|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+|
T Consensus 162 ~~----~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~ 237 (371)
T 4exu_A 162 SA----GVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLT 237 (371)
T ss_dssp HT----TCCCSCCCGGGEEECTTCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHH
T ss_pred HC----CCcCCCcCHHHeEECCCCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHh
Confidence 54 79999999541 1122358999999999877 678999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhC-CC-Ccccccccc--------ccc-hh-hhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESL-PH-RLSEVVDTN--------LVR-EE-QAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~~~--------~~~-~~-~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
|+.||...... ..+...+...- +. .....+... +.. .. ............+.+++.+|++.||++||
T Consensus 238 g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 316 (371)
T 4exu_A 238 GKTLFKGKDYL-DQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRL 316 (371)
T ss_dssp SSCSCCCSSHH-HHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSC
T ss_pred CCCCCCCCChH-HHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcC
Confidence 99999753211 11111111110 00 000000000 000 00 00001123356788999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
|+.|+++
T Consensus 317 t~~ell~ 323 (371)
T 4exu_A 317 TAAQALT 323 (371)
T ss_dssp CHHHHHT
T ss_pred CHHHHhc
Confidence 9999976
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=218.65 Aligned_cols=215 Identities=22% Similarity=0.325 Sum_probs=145.4
Q ss_pred cccCCCCCCCCCC-----Cccce-eeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCC
Q 040540 27 ALANNWSISYPIC-----SWAGI-SCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRR 100 (669)
Q Consensus 27 ~l~~~w~~~~~~c-----~~~g~-~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 100 (669)
.+.. |.....+| .|.++ .|.. .+++.|++++|++++ +|..+ +++|++|+|++|.++ .+| ..+++
T Consensus 32 ~l~~-W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 32 AWDK-WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHH-HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHH-HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCC
Confidence 3444 76666778 68888 6754 479999999999987 77655 378999999999998 566 45789
Q ss_pred CCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEccc
Q 040540 101 LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWS 180 (669)
Q Consensus 101 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~ 180 (669)
|++|+|++|++++ +|. +.+ +|++|+|++|++++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 9999999999986 776 665 89999999999986 555 57788888888888775 554 466777777777
Q ss_pred CCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC
Q 040540 181 CNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI 260 (669)
Q Consensus 181 n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~ 260 (669)
|.+++ +|. |. ++|+.|+|++|.++ .+|. +.. +| ....+.|++|+|++|+++ .+
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L------------------~~~~~~L~~L~Ls~N~l~-~l 222 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN------------------HHSEETEIFFRCRENRIT-HI 222 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------------------------CCEEEECCSSCCC-CC
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh------------------hcccccceEEecCCCcce-ec
Confidence 77765 555 54 67777777777776 3444 332 33 001112255555555544 24
Q ss_pred CccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 261 PNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 261 p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
|..+..+++|+.|++++|.+++.+|..+..
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 444444555555555555555555554443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=190.27 Aligned_cols=177 Identities=20% Similarity=0.229 Sum_probs=117.8
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecc
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAE 155 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (669)
..++++++++.++ .+|..+. +.|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..+.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567888888887 4565554 578888888888887777778888888888888888887767677777777777777
Q ss_pred cccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcccc
Q 040540 156 FNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235 (669)
Q Consensus 156 ~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 235 (669)
+|.+++..+..+..+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|.+++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77777666666677777777777777776655555666677777777777766555545555555555555555554222
Q ss_pred chhhhccCCCCCeeecccCcc
Q 040540 236 PSTIGHSLRNIEYLALSTNNL 256 (669)
Q Consensus 236 p~~~~~~l~~L~~L~ls~n~l 256 (669)
+..+ ..+++|++|++++|.+
T Consensus 172 ~~~~-~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 172 HGAF-DRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTT-TTCTTCCEEECCSCCB
T ss_pred HHHH-hCCCCCCEEEeeCCce
Confidence 2222 2344444444444443
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=211.80 Aligned_cols=198 Identities=17% Similarity=0.195 Sum_probs=139.7
Q ss_pred cCchhhhhhccccccc------cceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNVRHRN------LIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|+..+..++|++ ++.+++++......++||||+ ++++.+++.... ..+++..+..++.|+++||+|||
T Consensus 62 ~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH 140 (355)
T 2eu9_A 62 AARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH 140 (355)
T ss_dssp HHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556888888888776 788888888888899999999 567777776543 46899999999999999999999
Q ss_pred cCCCCCCeeecCCCCccc-----------------------------------------ccccccccccCccccccCCCc
Q 040540 521 HGHSSAPIIHCEGEDSVT-----------------------------------------QTTTMATIGYMAPEYGSEGIV 559 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~~-----------------------------------------~~~~~gt~~y~aPE~~~~~~~ 559 (669)
. .+|+|+|+|+... .....||+.|+|||++.+..+
T Consensus 141 ~----~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~ 216 (355)
T 2eu9_A 141 E----NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGW 216 (355)
T ss_dssp T----TTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCC
T ss_pred H----CCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCC
Confidence 4 4899999985411 112358999999999998889
Q ss_pred CccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhC---CCCc------ccc-------cccccc----------
Q 040540 560 SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL---PHRL------SEV-------VDTNLV---------- 613 (669)
Q Consensus 560 ~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~---~~~~------~~~-------~~~~~~---------- 613 (669)
+.++|||||||++|||+||+.||..... ......+.... |... ... .+....
T Consensus 217 ~~~~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T 2eu9_A 217 AQPCDVWSIGCILFEYYRGFTLFQTHEN--REHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCK 294 (355)
T ss_dssp CTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCC
T ss_pred CCccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCC
Confidence 9999999999999999999999975321 11111111111 1000 000 000000
Q ss_pred chhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 614 REEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...............+.+++.+||+.||++|||+.|+++
T Consensus 295 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 295 PLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp CGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred cccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 000000112234567889999999999999999999974
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=215.77 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=108.7
Q ss_pred ccCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+.+|+.++..++|+|++++++++... ...++||||+. |+|.++++. ...+++.....++.|+++||+|||.
T Consensus 70 ~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~-~~~l~~~~~~~i~~qil~aL~~LH~ 147 (432)
T 3n9x_A 70 KRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SDLKKLFKT-PIFLTEEHIKTILYNLLLGENFIHE 147 (432)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EEHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cCHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999998765 46799999997 699999975 4568999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc-----------------------------------------------cccccccccccCccccc
Q 040540 522 GHSSAPIIHCEGEDSV-----------------------------------------------TQTTTMATIGYMAPEYG 554 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~-----------------------------------------------~~~~~~gt~~y~aPE~~ 554 (669)
. +|+|||+|+.. ..+..+||+.|+|||++
T Consensus 148 ~----givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~ 223 (432)
T 3n9x_A 148 S----GIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELI 223 (432)
T ss_dssp T----TEECCCCCGGGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHH
T ss_pred C----CCCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHH
Confidence 4 79999999530 01334689999999985
Q ss_pred -cCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 555 -SEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 555 -~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
....|+.++||||+||++|||++|..|+.
T Consensus 224 ~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 224 LLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp TTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred hcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 45669999999999999999998766553
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=222.40 Aligned_cols=196 Identities=19% Similarity=0.211 Sum_probs=138.4
Q ss_pred ccCchhhhhhccccccccceecccccc------ccccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~ 518 (669)
+.+..|+.++..++|||++++++++.. ....++||||+++|+|.+++.... ..+++..+..|+.++++|++|
T Consensus 57 ~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~y 136 (676)
T 3qa8_A 57 ERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRY 136 (676)
T ss_dssp HHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 356779999999999999999988755 667789999999999999998633 257888899999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
||. .+++|+|+++.. ......||+.|+|||++.+..++.++|||||||+
T Consensus 137 LHs----~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGvi 212 (676)
T 3qa8_A 137 LHE----NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTL 212 (676)
T ss_dssp HHH----TTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHH
T ss_pred HHH----CCCccCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHH
Confidence 995 479999998531 0112358999999999998899999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhCCC-----Ccccccccccc--ch-hhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESLPH-----RLSEVVDTNLV--RE-EQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
+|||+||+.||.... ....|....... ...+....... .. .............+.+++.+|+..||++
T Consensus 213 LyeLltG~~Pf~~~~----~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~k 288 (676)
T 3qa8_A 213 AFECITGFRPFLPNW----QPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQ 288 (676)
T ss_dssp HHHHHSSCSSCCSSC----HHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC-
T ss_pred HHHHHHCCCCCCccc----chhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhh
Confidence 999999999986421 111111100000 00000000000 00 0000112345667899999999999999
Q ss_pred CCCHHHH
Q 040540 644 RMHMTDA 650 (669)
Q Consensus 644 Rps~~~v 650 (669)
|||+.|+
T Consensus 289 RPTa~el 295 (676)
T 3qa8_A 289 RGTDPQN 295 (676)
T ss_dssp --CCTTC
T ss_pred CcCHHHH
Confidence 9999884
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-23 Score=209.06 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=138.6
Q ss_pred ccCchhhhhhccccccccceeccccc--------------cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS--------------NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDV 512 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~--------------~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i 512 (669)
+.+..|+.++..++|||++++++++. .....++||||++ |+|.+++.. ..+++.....++.++
T Consensus 53 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi 129 (320)
T 2i6l_A 53 KHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQ--GPLLEEHARLFMYQL 129 (320)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS-EEHHHHHTT--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccCceeEEeeccC-CCHHHHhhc--CCccHHHHHHHHHHH
Confidence 45668999999999999999988763 3456789999998 699999964 458889999999999
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCccc-----------------------------ccccccccccCccccccC-CCcCcc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDSVT-----------------------------QTTTMATIGYMAPEYGSE-GIVSAK 562 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~~~-----------------------------~~~~~gt~~y~aPE~~~~-~~~~~~ 562 (669)
++|++|||.. +++|+|+|+... .....||..|+|||...+ ..++.+
T Consensus 130 ~~~l~~lH~~----~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 205 (320)
T 2i6l_A 130 LRGLKYIHSA----NVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKA 205 (320)
T ss_dssp HHHHHHHHHT----TCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHH
T ss_pred HHHHHHHHhC----CEecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCch
Confidence 9999999954 799999985310 011236888999998765 678999
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccc-----------cccccccch-hhhhhhhHHHHHHHH
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSE-----------VVDTNLVRE-EQAFSAKMDCLLSIM 630 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~ 630 (669)
+|||||||++|||+||+.||..... ......+....+..... .+....... .+...........+.
T Consensus 206 ~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (320)
T 2i6l_A 206 IDMWAAGCIFAEMLTGKTLFAGAHE--LEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAV 283 (320)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHH
T ss_pred hhhHhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHH
Confidence 9999999999999999999975321 11112122221110000 000000000 000000123456788
Q ss_pred HHHhhcccCCCCCCCCHHHHHH
Q 040540 631 DLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 631 ~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+++.+|++.||++|||+.|+++
T Consensus 284 ~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 284 DFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCCccccCCHHHHhC
Confidence 9999999999999999999976
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-23 Score=207.58 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=133.4
Q ss_pred ccCchhhhhhccccccccceecccccc-------------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-------------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVG 513 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-------------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~ 513 (669)
+.+..|+..+..++|||++++++++.. ....++||||+++|+|.+++......+++.....++.+++
T Consensus 47 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~ 126 (303)
T 1zy4_A 47 STILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQIL 126 (303)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHH
Confidence 456679999999999999999987643 4567899999999999999987666788889999999999
Q ss_pred hhhhhhhcCCCCCCeeecCCCCcc-----------------c----------------------ccccccccccCccccc
Q 040540 514 SALEYLRHGHSSAPIIHCEGEDSV-----------------T----------------------QTTTMATIGYMAPEYG 554 (669)
Q Consensus 514 ~~l~~lh~~~~~~~i~h~d~~~~~-----------------~----------------------~~~~~gt~~y~aPE~~ 554 (669)
+|++|||.. +++|+|+++.. . .....||+.|+|||++
T Consensus 127 ~~l~~LH~~----~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~ 202 (303)
T 1zy4_A 127 EALSYIHSQ----GIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202 (303)
T ss_dssp HHHHHHHHT----TCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHH
T ss_pred HHHHHHHhC----CeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccc
Confidence 999999954 79999998431 0 0122488999999998
Q ss_pred cCC-CcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHH
Q 040540 555 SEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLA 633 (669)
Q Consensus 555 ~~~-~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 633 (669)
.+. .++.++|||||||++|||++ |+.... +.......+..... .. .+.. +...+..+.+++
T Consensus 203 ~~~~~~~~~~Di~slG~il~~l~~---p~~~~~-~~~~~~~~~~~~~~-~~----~~~~---------~~~~~~~~~~li 264 (303)
T 1zy4_A 203 DGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM-ERVNILKKLRSVSI-EF----PPDF---------DDNKMKVEKKII 264 (303)
T ss_dssp TSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH-HHHHHHHHHHSTTC-CC----CTTC---------CTTTSHHHHHHH
T ss_pred cCCCCCcchhhHHHHHHHHHHHHh---ccCCch-hHHHHHHhcccccc-cc----Cccc---------cccchHHHHHHH
Confidence 764 68999999999999999998 443210 11111111111100 00 0111 122334578999
Q ss_pred hhcccCCCCCCCCHHHHHH
Q 040540 634 LDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 634 ~~c~~~~P~~Rps~~~v~~ 652 (669)
.+||+.||++|||+.|+++
T Consensus 265 ~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 265 RLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HHHTCSSGGGSCCHHHHHH
T ss_pred HHHHhcCcccCcCHHHHhC
Confidence 9999999999999999987
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-23 Score=210.62 Aligned_cols=181 Identities=19% Similarity=0.183 Sum_probs=128.7
Q ss_pred hhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeec
Q 040540 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC 531 (669)
Q Consensus 452 e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~ 531 (669)
+...+...+|||++++++++......++||||+ ++.+..+.......+++.....++.++++|+.|||.. .+++|+
T Consensus 74 ~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~~i~H~ 149 (318)
T 2dyl_A 74 LDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEK---HGVIHR 149 (318)
T ss_dssp HHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCC
T ss_pred HHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh---CCEEeC
Confidence 344567779999999999999988999999999 4555555544455689999999999999999999952 269999
Q ss_pred CCCCcc------------------------cccccccccccCcccccc-----CCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 532 EGEDSV------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 532 d~~~~~------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+++.. ......||+.|+|||++. ...++.++|||||||++|||++|+.||
T Consensus 150 dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf 229 (318)
T 2dyl_A 150 DVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPY 229 (318)
T ss_dssp CCCGGGEEECTTSCEEECCCTTC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCC
Confidence 998531 011235899999999984 456889999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.........+..... ..+.... ........+.+++.+||+.||.+||++.|+++
T Consensus 230 ~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 230 KNCKTDFEVLTKVLQ-EEPPLLP---------------GHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp TTCCSHHHHHHHHHH-SCCCCCC---------------SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCCccHHHHHHHhc-cCCCCCC---------------ccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 753221111111111 1111100 01112345789999999999999999999976
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=209.32 Aligned_cols=197 Identities=20% Similarity=0.158 Sum_probs=138.2
Q ss_pred cCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+.++..++|+|++++++++... ...++||||+. |+|.+++.. ..+++..+..++.++++||+|||.
T Consensus 55 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~- 130 (353)
T 2b9h_A 55 RTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRVIST--QMLSDDHIQYFIYQTLRAVKVLHG- 130 (353)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 456789999999999999999887653 56789999998 699999975 358999999999999999999995
Q ss_pred CCCCCeeecCCCCccc-----------------------------------ccccccccccCccccccC-CCcCccccch
Q 040540 523 HSSAPIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVY 566 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~ 566 (669)
.+++|+|+|+... .....||+.|+|||++.. ..++.++|||
T Consensus 131 ---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~ 207 (353)
T 2b9h_A 131 ---SNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVW 207 (353)
T ss_dssp ---TTEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHH
T ss_pred ---CCeecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHH
Confidence 4799999985310 011257999999998754 6789999999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCCccHHHHHHH-hCCCC--cccccc-c-------cccc--hhhhhhhhHHHHHHHHHHH
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE-SLPHR--LSEVVD-T-------NLVR--EEQAFSAKMDCLLSIMDLA 633 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~-~~~~~--~~~~~~-~-------~~~~--~~~~~~~~~~~~~~~~~l~ 633 (669)
||||++|||++|+.||...... ..+...... ..+.. ....+. . .+.. ..............+.+++
T Consensus 208 slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 286 (353)
T 2b9h_A 208 SCGCILAELFLRRPIFPGRDYR-HQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLL 286 (353)
T ss_dssp HHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCcH-HHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHH
Confidence 9999999999999999753211 111111111 00100 000000 0 0000 0000001123456778999
Q ss_pred hhcccCCCCCCCCHHHHHH
Q 040540 634 LDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 634 ~~c~~~~P~~Rps~~~v~~ 652 (669)
.+||+.||++|||+.|+++
T Consensus 287 ~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 287 QRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp HHHSCSSGGGSCCHHHHHT
T ss_pred HHhcCcCcccCCCHHHHhc
Confidence 9999999999999999976
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-23 Score=220.44 Aligned_cols=234 Identities=19% Similarity=0.227 Sum_probs=181.8
Q ss_pred CCEEEEEcCCCCCccccc----ccccCCCCCCEEeCCCC---cCcccCCccc-------CCCCCCCEEEccCCcCCc---
Q 040540 51 QRVTALNLSDMGLGGTIP----LHFGNLSFLVSLDISEN---NFHGHLPKEL-------GQLRRLRVMSLAYNKLSG--- 113 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~----~~~~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~--- 113 (669)
..++.|+|++|.+++..+ ..+..+++|++|+|++| ++.+.+|..+ ..+++|++|+|++|.+.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 468999999999987643 45789999999999996 4556666655 789999999999999987
Q ss_pred -cCCccccCCcccccccccccCccccCCcccC----CC---------CCCCeeeccccccc-ccCC---cccCCCCCCCE
Q 040540 114 -SFPSWIGVLSKLRILRLDYNNFTGPIPNSLF----NL---------SRLEMLRAEFNIIG-GTIP---SRIGNLRKLVN 175 (669)
Q Consensus 114 -~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~l~~n~l~-~~~p---~~~~~L~~L~~ 175 (669)
.+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|.++ +.+| ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 4788899999999999999999755444443 34 89999999999997 4455 46778999999
Q ss_pred EEcccCCCcc-----cCCccccCCCCCCEEEccCCCCC----CCCCccccCCCCCcEEEcccCCCccc----cchhhh-c
Q 040540 176 LGLWSCNLQG-----QIPTEIGSLQNLKNLDLADNKLS----GLIPPTIFNISTMRILTLESNQLSGR----LPSTIG-H 241 (669)
Q Consensus 176 L~l~~n~l~~-----~~p~~~~~l~~L~~L~l~~N~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~-~ 241 (669)
|++++|.++. ..|..+..+++|++|+|++|.++ +.+|..+..+++|++|++++|.+++. ++..+. .
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999973 34557889999999999999996 56777888888999999999988754 344432 1
Q ss_pred cCCCCCeeecccCcccc----cCCccc-cCCCCCCEEeCCCCCccccC
Q 040540 242 SLRNIEYLALSTNNLIG----KIPNSI-TNATKLIGLDLGFNSFSGHI 284 (669)
Q Consensus 242 ~l~~L~~L~ls~n~l~~----~~p~~~-~~l~~L~~L~ls~n~l~~~~ 284 (669)
.+++|++|+|++|.+.+ .+|..+ .++++|+.|++++|.+.+..
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 25677777777777765 355544 44566666666666665444
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-22 Score=206.09 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=134.1
Q ss_pred ccCchhhhhhccc----cccccceeccccccccccceeecc-CCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNV----RHRNLIKIISSCSNPDFKALVLEF-MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l----~h~niv~l~~~~~~~~~~~lv~ey-~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
..+..|+..+.++ +|+|++++++++...+..++|||| +++++|.+++.+. ..+++..+..++.++++||+|||.
T Consensus 79 ~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~ 157 (312)
T 2iwi_A 79 VTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEK-GPLGEGPSRCFFGQVVAAIQHCHS 157 (312)
T ss_dssp CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888 899999999999888889999999 7899999999863 458999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHH
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETF 576 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~ 576 (669)
. +++|+|+++.. ......||..|+|||++.+..+ +.++|||||||++|||+
T Consensus 158 ~----~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~ 233 (312)
T 2iwi_A 158 R----GVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMV 233 (312)
T ss_dssp H----TEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred C----CeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHH
Confidence 4 79999998431 1122348899999998877665 45999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||... ........ . + +......+.+++.+||+.||++|||+.|+++
T Consensus 234 ~g~~pf~~~-------~~~~~~~~--~--------~---------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 234 CGDIPFERD-------QEILEAEL--H--------F---------PAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp HSSCSCCSH-------HHHHHTCC--C--------C---------CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HCCCCCCCh-------HHHhhhcc--C--------C---------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 999998642 11111000 0 0 1122345789999999999999999999986
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-23 Score=216.46 Aligned_cols=269 Identities=16% Similarity=0.175 Sum_probs=165.6
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCC----ccccCCc-ccccccccccCccccCCcccCCC-----CC
Q 040540 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFP----SWIGVLS-KLRILRLDYNNFTGPIPNSLFNL-----SR 148 (669)
Q Consensus 79 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~ 148 (669)
.+++++|.+++.+|..+...++|++|+|++|.+.+..+ +.+.+++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888888777777777778888888888876555 6667777 78888888887776555555443 55
Q ss_pred CCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCC-CCCCEEEccCCCCCCCCCcccc----C-CCCCc
Q 040540 149 LEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSL-QNLKNLDLADNKLSGLIPPTIF----N-ISTMR 222 (669)
Q Consensus 149 L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~----~-l~~L~ 222 (669)
|++|++++|.+++..+..+... +..+ ++|++|++++|.+++..+..+. . .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 5555555555554443322221 1122 4455555555555443333322 1 13555
Q ss_pred EEEcccCCCccc----cchhhhccCC-CCCeeecccCcccccCCccc----cCC-CCCCEEeCCCCCcccc----Ccccc
Q 040540 223 ILTLESNQLSGR----LPSTIGHSLR-NIEYLALSTNNLIGKIPNSI----TNA-TKLIGLDLGFNSFSGH----IPNTF 288 (669)
Q Consensus 223 ~L~l~~n~l~~~----~p~~~~~~l~-~L~~L~ls~n~l~~~~p~~~----~~l-~~L~~L~ls~n~l~~~----~p~~~ 288 (669)
+|++++|.+++. ++..+. .++ +|++|++++|++.+..+..+ ... ++|+.|++++|.+... ++..+
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 555555555432 222222 233 67777777777665554433 333 5788888888888753 44455
Q ss_pred CC-CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh---hccccccceEeecCccc
Q 040540 289 GN-LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF---SASLQNIYAFELGFNDL 364 (669)
Q Consensus 289 ~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~~l~~l~~l~l~~n~l 364 (669)
.. .++|+.|++++|.+++.... .+...+..+++|+.|++++|.+.+..+...... ...++.|+.+++++|.+
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLE----NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHH----HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred hcCCCCceEEECcCCCCCcHHHH----HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 54 46999999999998765210 112334677899999999998665554433322 23467788999999998
Q ss_pred CCCCCccc
Q 040540 365 NGTIPTSI 372 (669)
Q Consensus 365 ~~~~~~~~ 372 (669)
....+..+
T Consensus 297 ~~~~~~~~ 304 (362)
T 3goz_A 297 HPSHSIPI 304 (362)
T ss_dssp CGGGCHHH
T ss_pred CCcchHHH
Confidence 87644443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-23 Score=213.12 Aligned_cols=255 Identities=18% Similarity=0.220 Sum_probs=159.6
Q ss_pred CCEEeCCCCcCcccCCcccCCC--CCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 77 LVSLDISENNFHGHLPKELGQL--RRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 77 L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
++.||+++|.+. |..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++.
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~---------------- 108 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS---------------- 108 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH----------------
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH----------------
Confidence 566677766654 3344444 5666666666666554443 33456666666666555433
Q ss_pred ccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCC-CCCC-CCCccccCCCCCcEEEcccC-CC
Q 040540 155 EFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADN-KLSG-LIPPTIFNISTMRILTLESN-QL 231 (669)
Q Consensus 155 ~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N-~l~~-~~p~~~~~l~~L~~L~l~~n-~l 231 (669)
.+|..+..+++|++|++++|.+++..|..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+
T Consensus 109 -------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 109 -------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp -------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred -------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 03344444455555555555555445555555555555555555 3443 13444555666666666666 55
Q ss_pred ccc-cchhhhccCC-CCCeeecccC--ccc-ccCCccccCCCCCCEEeCCCCC-ccccCccccCCCCCCCEEEccCCc-c
Q 040540 232 SGR-LPSTIGHSLR-NIEYLALSTN--NLI-GKIPNSITNATKLIGLDLGFNS-FSGHIPNTFGNLRHLSVLNVMMNN-L 304 (669)
Q Consensus 232 ~~~-~p~~~~~~l~-~L~~L~ls~n--~l~-~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~l~~N~-l 304 (669)
++. ++..+. .++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +
T Consensus 182 ~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 182 TEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred ChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 543 344343 567 7888888877 344 3456667788999999999999 777777889999999999999985 2
Q ss_pred ccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccc
Q 040540 305 TTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGT 374 (669)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~ 374 (669)
... .+..+..+++|+.|++++| +... .+..+. ..+..+++++|.+++..|..++.
T Consensus 261 ~~~--------~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~---~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 261 IPE--------TLLELGEIPTLKTLQVFGI-VPDG---TLQLLK---EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CGG--------GGGGGGGCTTCCEEECTTS-SCTT---CHHHHH---HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CHH--------HHHHHhcCCCCCEEeccCc-cCHH---HHHHHH---hhCcceEEecccCccccCCcccc
Confidence 111 1234677999999999998 3322 222221 23566778999999988887764
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-22 Score=208.53 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=138.0
Q ss_pred ccCchhhhhhcccc--ccccceeccccccccccceeeccCCC-CChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVR--HRNLIKIISSCSNPDFKALVLEFMPN-GSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ey~~~-g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+.++..++ |+|++++++++..++..++||||+.+ ++|.+++... ..+++..+..++.++++||+|||.
T Consensus 91 ~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~~LH~-- 167 (320)
T 3a99_A 91 TRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER-GALQEELARSFFWQVLEAVRHCHN-- 167 (320)
T ss_dssp CEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEEEEcCCCCccHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 35667888998886 59999999999998899999999976 8999999753 458999999999999999999995
Q ss_pred CCCCeeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhC
Q 040540 524 SSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 524 ~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+|+.. ......||+.|+|||++.+..+ +.++|||||||++|||+||
T Consensus 168 --~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g 245 (320)
T 3a99_A 168 --CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCG 245 (320)
T ss_dssp --TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHS
T ss_pred --CCcEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHC
Confidence 479999998531 0112358999999999877665 7889999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||.... ....... .. +......+.+++.+||+.||++|||+.|+++
T Consensus 246 ~~pf~~~~-------~~~~~~~------~~-------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 246 DIPFEHDE-------EIIRGQV------FF-------------RQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp SCSCCSHH-------HHHHCCC------CC-------------SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCChh-------hhhcccc------cc-------------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99986421 1111100 00 0112345789999999999999999999986
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-22 Score=206.99 Aligned_cols=200 Identities=14% Similarity=0.093 Sum_probs=135.0
Q ss_pred Cchhhhhhccccccccceeccccccccc-------cceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDF-------KALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~-------~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
...++..+..++|||++++++++..... .++||||+++ ++.+.+.. ....+++.....++.+++.|+.|
T Consensus 66 ~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~ 144 (360)
T 3e3p_A 66 ELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGC 144 (360)
T ss_dssp HHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence 3455666778899999999998855332 6899999985 55554432 44568888999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccCCC-cCccccchhhHHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLL 572 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil 572 (669)
||.. ..+|+|+|+|+.. ......||+.|+|||++.+.. ++.++|||||||++
T Consensus 145 lH~~--~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il 222 (360)
T 3e3p_A 145 LHLP--SVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIF 222 (360)
T ss_dssp HTST--TTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHH
T ss_pred HhCC--CCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHH
Confidence 9932 4589999999531 111235899999999886644 89999999999999
Q ss_pred HHHHhCCCCCCcCCCCCccHHHHHHHhCCCC--cccccccc-----------ccchhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 573 METFTRKRPTDEMFTGEMSLRRWVKESLPHR--LSEVVDTN-----------LVREEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
|||+||+.||..... ...+...++...... ....+++. ..-..............+.+++.+||+.
T Consensus 223 ~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~ 301 (360)
T 3e3p_A 223 AEMMLGEPIFRGDNS-AGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQY 301 (360)
T ss_dssp HHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCS
T ss_pred HHHHhCCCCcCCCCh-HHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhcc
Confidence 999999999976321 111222222111100 00000000 0000000000112456789999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
||.+|||+.|+++
T Consensus 302 dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 302 LPEERMKPYEALC 314 (360)
T ss_dssp SGGGSCCHHHHTT
T ss_pred CccccCCHHHHhc
Confidence 9999999999976
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=209.16 Aligned_cols=197 Identities=19% Similarity=0.192 Sum_probs=137.1
Q ss_pred ccCchhhhhhccccccccceeccccccccc------cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDF------KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~------~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+..|+..+..++|||++++++++..... .++||||++ |+|.+++.. .+++.....++.++++||+|||
T Consensus 68 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH 143 (353)
T 3coi_A 68 KRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH 143 (353)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999998876543 489999998 689888753 3899999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 521 HGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
.. +++|+|+++.. ......||+.|+|||++.+ ..++.++|||||||++|||++
T Consensus 144 ~~----~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~ 219 (353)
T 3coi_A 144 SA----GVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLT 219 (353)
T ss_dssp HT----TCCCSSCCGGGEEECTTCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHH
T ss_pred HC----CcccCCCCHHHEeECCCCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHh
Confidence 54 79999999541 1122358999999998876 668999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHh-CCC-Cccccccc--------cccc-hhhhh-hhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 578 RKRPTDEMFTGEMSLRRWVKES-LPH-RLSEVVDT--------NLVR-EEQAF-SAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~--------~~~~-~~~~~-~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
|+.||...... ..+...++.. .+. .....+.. .+.. ....+ .........+.+++.+|++.||++||
T Consensus 220 g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rp 298 (353)
T 3coi_A 220 GKTLFKGKDYL-DQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRL 298 (353)
T ss_dssp SSCSSBSSCHH-HHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSC
T ss_pred CCCCCCCCCHH-HHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCC
Confidence 99999753211 1111111110 000 00000000 0000 00000 00123456788999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
|+.|+++
T Consensus 299 t~~e~l~ 305 (353)
T 3coi_A 299 TAAQALT 305 (353)
T ss_dssp CHHHHHT
T ss_pred CHHHHhc
Confidence 9999975
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-23 Score=211.98 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=119.6
Q ss_pred hhhh-hhccccccccceeccccccccccceeeccCCCCChHHhhhc----CCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 451 SECE-VLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS----HNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 451 ~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~----~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.|.. .++.++|||++++++++...+..++||||++ |+|.+++.. ....+++.....++.++++|+.|||..
T Consensus 69 ~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--- 144 (327)
T 3aln_A 69 MDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--- 144 (327)
T ss_dssp HHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc---
Confidence 3444 6677899999999999998888999999998 488887753 245689999999999999999999952
Q ss_pred CCeeecCCCCcc------------------------cccccccccccCccccc----cCCCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDSV------------------------TQTTTMATIGYMAPEYG----SEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+++.. ......||+.|+|||++ .+..++.++|||||||++|||++
T Consensus 145 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~ 224 (327)
T 3aln_A 145 LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELAT 224 (327)
T ss_dssp HSCCCSCCCGGGEEEETTTEEEECCCSSSCC------------------------------CCSHHHHHHHHHHHHHHHH
T ss_pred CCEeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHH
Confidence 279999999541 01122589999999998 45668999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|+.||........ ...... ....+.+... ........+.+++.+||+.||++||++.|+++
T Consensus 225 g~~pf~~~~~~~~----~~~~~~-----~~~~~~~~~~-----~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 225 GRFPYPKWNSVFD----QLTQVV-----KGDPPQLSNS-----EEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp SCCCSSCC-----------CCCC-----CSCCCCCCCC-----SSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCCCCcchHHH----HHHHHh-----cCCCCCCCCc-----ccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 9999975321110 000000 0000111000 01123456789999999999999999999976
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=186.37 Aligned_cols=181 Identities=22% Similarity=0.241 Sum_probs=145.2
Q ss_pred CCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCc
Q 040540 38 ICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPS 117 (669)
Q Consensus 38 ~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 117 (669)
.|.|.++.|.. +++. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++.+..+.
T Consensus 6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 46787777753 3333 233322 35788999999988877777788889999999999988866666
Q ss_pred cccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCC
Q 040540 118 WIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNL 197 (669)
Q Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L 197 (669)
.|..+++|++|+|++|++++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 78888999999999999887666678889999999999998887777778889999999999999987777778889999
Q ss_pred CEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhh
Q 040540 198 KNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIG 240 (669)
Q Consensus 198 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 240 (669)
++|++++|.+.+. +++|+.|+++.|.++|.+|..++
T Consensus 151 ~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 151 QYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTS
T ss_pred cEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCc
Confidence 9999999987754 45788888999999999998776
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=196.42 Aligned_cols=192 Identities=21% Similarity=0.309 Sum_probs=93.6
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
..+++|++|++++|.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|+|++|.+++. +.+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345556666666665553 33 35556666666666666553322 55666666666666665532 23555555555
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+.+. + .+..+++|++|++++|.+++..+ ++.+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 55555555432 1 25555555555555555543322 4555555555555555554222 44445555555555544
Q ss_pred ccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCc
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSF 280 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l 280 (669)
++ ++. + ..+++|++|++++|++.+..+ +..+++|+.|++++|.+
T Consensus 186 ~~-~~~-l-~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 186 SD-ISP-L-ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CC-CGG-G-GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred Cc-Chh-h-cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 42 221 1 134444444444444433221 33344444444444433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-22 Score=224.35 Aligned_cols=179 Identities=18% Similarity=0.247 Sum_probs=138.0
Q ss_pred cCchhhhhhccccccccceeccccccccc-----cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDF-----KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~-----~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+..+..++||||+++++++...+. .++||||+++++|.+++.. .+++.++..|+.++++||.|||..
T Consensus 125 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH~~ 201 (681)
T 2pzi_A 125 MAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLHSI 201 (681)
T ss_dssp HHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence 46678999999999999999999877655 5899999999999998764 589999999999999999999954
Q ss_pred CCCCCeeecCCCCcc--------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 523 HSSAPIIHCEGEDSV--------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~--------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|||+|+.. ......||+.|+|||++.+. ++.++|||||||++|||++|..|+
T Consensus 202 ----giiHrDlkp~NIll~~~~~kl~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~ 276 (681)
T 2pzi_A 202 ----GLVYNDLKPENIMLTEEQLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTR 276 (681)
T ss_dssp ----TEECCCCSGGGEEECSSCEEECCCTTCEETTCCSCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred ----CCeecccChHHeEEeCCcEEEEecccchhcccCCccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCC
Confidence 79999999641 11233599999999988665 488999999999999999999887
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-CHHHHHHHHHHhHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-HMTDAAAKLKKIKVK 660 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-s~~~v~~~l~~~~~~ 660 (669)
........ + .. .........+.+++.+||+.||++|| +++++...+.++...
T Consensus 277 ~~~~~~~~----------~------------~~----~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~ 329 (681)
T 2pzi_A 277 NGRYVDGL----------P------------ED----DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLRE 329 (681)
T ss_dssp TTEECSSC----------C------------TT----CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHH
T ss_pred cccccccc----------c------------cc----ccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHH
Confidence 54221110 0 00 00122345678999999999999999 577777777776544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=180.73 Aligned_cols=181 Identities=19% Similarity=0.201 Sum_probs=152.3
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+.++.+++.++ .+|..+ .++|++|++++|++.+..+..|+++++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56788888887 455444 468999999999999777778899999999999999999776677889999999999999
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccch
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (669)
.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9997777778999999999999999988777778899999999999999998777678888999999999998764
Q ss_pred hhhccCCCCCeeecccCcccccCCccccCCCC
Q 040540 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATK 269 (669)
Q Consensus 238 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 269 (669)
.+++|++|+++.|+++|.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3567888888888888888877765543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=192.08 Aligned_cols=191 Identities=25% Similarity=0.392 Sum_probs=167.0
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|+++++++.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+ + ..+..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEEC
Confidence 468999999999975 44 68999999999999999986554 9999999999999999985 3 36999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|++++. | .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 99999864 4 39999999999999999986544 8899999999999999986544 89999999999999999976
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccc
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIG 258 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~ 258 (669)
.+ +..+++|++|++++|.+++..+ +. .+++|++|++++|.+++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~-~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LA-NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GT-TCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--cc-CCCCCCEEEccCCeeec
Confidence 44 8899999999999999985443 43 68999999999999875
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-24 Score=237.51 Aligned_cols=375 Identities=13% Similarity=0.106 Sum_probs=182.9
Q ss_pred CCEEEEEcCCCCCccc---cccc------------ccCCCCCCEEeCCCCcCcccCCcccC-CCCCCCEEEccCC-cCCc
Q 040540 51 QRVTALNLSDMGLGGT---IPLH------------FGNLSFLVSLDISENNFHGHLPKELG-QLRRLRVMSLAYN-KLSG 113 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~---~~~~------------~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~ 113 (669)
.+++.|+++++..... .|.. ...+++|++|+|++|.+++..+..+. .+++|+.|+|++| .+..
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 5677777777653211 1111 23567788888888777766655554 5778888888777 3432
Q ss_pred c-CCccccCCcccccccccccCccccCCccc----CCCCCCCeeeccccc--ccc-cCCcccCCCCCCCEEEcccCCCcc
Q 040540 114 S-FPSWIGVLSKLRILRLDYNNFTGPIPNSL----FNLSRLEMLRAEFNI--IGG-TIPSRIGNLRKLVNLGLWSCNLQG 185 (669)
Q Consensus 114 ~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~l~~n~--l~~-~~p~~~~~L~~L~~L~l~~n~l~~ 185 (669)
. ++..+.++++|++|+|++|.+++..+..+ ..+++|+.|++++|. ++. .++..+.++++|++|++++|...+
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 34444567788888888877765443333 356678888887775 211 112223446778888887774333
Q ss_pred cCCccccCCCCCCEEEccCCCC-------CCCCCccccC------------------------CCCCcEEEcccCCCccc
Q 040540 186 QIPTEIGSLQNLKNLDLADNKL-------SGLIPPTIFN------------------------ISTMRILTLESNQLSGR 234 (669)
Q Consensus 186 ~~p~~~~~l~~L~~L~l~~N~l-------~~~~p~~~~~------------------------l~~L~~L~l~~n~l~~~ 234 (669)
.+|..+..+++|++|++..+.. .+ ++..+.+ +++|++|++++|.+++.
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 4666666777777777554421 11 1223334 44555555555554332
Q ss_pred cchhhhccCCCCCeeecccCccccc-CCccccCCCCCCEEeCC---------CCCccccCcccc-CCCCCCCEEEccCCc
Q 040540 235 LPSTIGHSLRNIEYLALSTNNLIGK-IPNSITNATKLIGLDLG---------FNSFSGHIPNTF-GNLRHLSVLNVMMNN 303 (669)
Q Consensus 235 ~p~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~ls---------~n~l~~~~p~~~-~~l~~L~~L~l~~N~ 303 (669)
....+...+++|++|++++| +... ++.....+++|+.|+++ .+.+++.....+ ..+++|+.|.+..|.
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 22222224455555555544 2111 11111234455555442 122222111111 124455555444444
Q ss_pred cccCCCCCccccccccc-CCCCCCCEEECc--C----CCCcccc-chhHhhhhccccccceEeecCcccCCCCCccccc-
Q 040540 304 LTTESSSADQWSFLSSL-TNCRNLSNLALA--S----NPLGGIL-PQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGT- 374 (669)
Q Consensus 304 l~~~~~~~~~~~~~~~l-~~l~~L~~L~l~--~----n~l~~~~-~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~- 374 (669)
++... +..+ ..+++|+.|+++ + +.++... ...+......+++|+.|++++ .+++.....+..
T Consensus 384 l~~~~--------~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 384 MTNAA--------LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp CCHHH--------HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred cCHHH--------HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 33210 0111 134555555555 2 2222111 011111122344555555544 333322222322
Q ss_pred cCCCcEEecCCCcccccCchhh-cCCCCCCeeeCcCCccceeCcc-cccCCCCCCEEECCCCcc
Q 040540 375 LQQLQGFYVPENNLQGYVPHDL-CHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKL 436 (669)
Q Consensus 375 l~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~l~~N~l 436 (669)
+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4556666666665544333333 3455666666666665433222 223355666666666654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=198.73 Aligned_cols=200 Identities=17% Similarity=0.107 Sum_probs=132.0
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCC-ccccCCccccc-cccccc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFP-SWIGVLSKLRI-LRLDYN 133 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~n 133 (669)
++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|+. +.+++|
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 344455665 455544 3578999999999986666778999999999999999876555 56788888764 666778
Q ss_pred CccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEccc-CCCcccCCccccCCC-CCCEEEccCCCCCCCC
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWS-CNLQGQIPTEIGSLQ-NLKNLDLADNKLSGLI 211 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~-n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~ 211 (669)
+++...|..|..+++|++|++++|.+....+..+....++..|++.+ +++....+..|..+. .++.|++++|.++. +
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-I 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-E
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-C
Confidence 88877777888888888888888888766666666666777777755 345544444555543 46667777777664 3
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccccc
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGK 259 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~ 259 (669)
|...+...+|+.+++++|...+.+|...+..+++|++|++++|+++..
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 333344445566665543222355554444555555555555555433
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=195.65 Aligned_cols=188 Identities=16% Similarity=0.198 Sum_probs=130.6
Q ss_pred Cchhhhhh-ccccccccceecccccc----ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 449 FDSECEVL-RNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 449 ~~~e~~~l-~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+..|+..+ +..+|||++++++++.. ....++||||+++|+|.+++.... ..+++.....++.+++.|++|||.
T Consensus 57 ~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~- 135 (299)
T 3m2w_A 57 ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS- 135 (299)
T ss_dssp HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 44677776 55689999999998866 667899999999999999998643 468999999999999999999995
Q ss_pred CCCCCeeecCCCCccccccc------ccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHH
Q 040540 523 HSSAPIIHCEGEDSVTQTTT------MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWV 596 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~~~~~~------~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~ 596 (669)
.+++|+|+|+....... +--..|-..+...+..++.++||||+||++|||+||+.||........
T Consensus 136 ---~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~------ 206 (299)
T 3m2w_A 136 ---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI------ 206 (299)
T ss_dssp ---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTCGGGGHHHHHHHHHHHHHHHHSSCSCCC------------
T ss_pred ---CCcccCCCCHHHEEEecCCCCCcEEEeccccccccccccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh------
Confidence 47999999976322111 101112122334456789999999999999999999999965321110
Q ss_pred HHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 597 KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
. ............. ...+.+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 207 ~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 207 S---PGMKTRIRMGQYE---FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp ----CCSCCSSCTTCCS---SCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred h---HHHHHHHhhcccc---CCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0 0000000000000 000112334567889999999999999999999986
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=195.39 Aligned_cols=235 Identities=20% Similarity=0.160 Sum_probs=185.5
Q ss_pred CCccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCC-cccCCCCCCCE-EEcc
Q 040540 39 CSWAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLP-KELGQLRRLRV-MSLA 107 (669)
Q Consensus 39 c~~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~L~ 107 (669)
|.|..|.|... ...++.|+|++|+|+...+..|.++++|++|+|++|.+.+.+| ..|.++++|+. +.++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888542 2468999999999987666689999999999999999877665 56889998775 6777
Q ss_pred CCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccc-ccccccCCcccCCCC-CCCEEEcccCCCcc
Q 040540 108 YNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF-NIIGGTIPSRIGNLR-KLVNLGLWSCNLQG 185 (669)
Q Consensus 108 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~L~-~L~~L~l~~n~l~~ 185 (669)
+|++....|+.|..+++|++|++++|++++..+..+....++..+++.. +.+....+..|..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 8999988889999999999999999999977777777888888999865 566666666777765 68999999999985
Q ss_pred cCCccccCCCCCCEEEccC-CCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccc
Q 040540 186 QIPTEIGSLQNLKNLDLAD-NKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI 264 (669)
Q Consensus 186 ~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~ 264 (669)
..+ ......+|+.|++++ |.++...+..|.++++|++|++++|+++ .+|... +.+|+.|.+.++.-.+.+| .+
T Consensus 169 i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 169 IHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp ECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred CCh-hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 544 444567899999986 5666554557889999999999999997 677654 4566666655554444566 36
Q ss_pred cCCCCCCEEeCCCCC
Q 040540 265 TNATKLIGLDLGFNS 279 (669)
Q Consensus 265 ~~l~~L~~L~ls~n~ 279 (669)
.++++|+.++++++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 777888888887654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-20 Score=199.80 Aligned_cols=181 Identities=24% Similarity=0.310 Sum_probs=108.8
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecc
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAE 155 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (669)
+|+.|++++|.+++ +|..+. ++|++|+|++|++. .+| ..+++|++|+|++|+|++ +|. +++ +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777765 555442 56777777777766 455 345666677777766664 444 443 55555555
Q ss_pred cccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcccc
Q 040540 156 FNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235 (669)
Q Consensus 156 ~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 235 (669)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-------------------------l 175 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-------------------------L 175 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-------------------------c
Confidence 555554 333 34455555555555543 332 23444455555444443 4
Q ss_pred chhhhccCCCCCeeecccCcccccCCccccC-----CCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccC
Q 040540 236 PSTIGHSLRNIEYLALSTNNLIGKIPNSITN-----ATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTE 307 (669)
Q Consensus 236 p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-----l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 307 (669)
|. +. ++|++|+|++|+++ .+|. +.. ...|+.|++++|.+. .+|..+..+++|+.|++++|.+++.
T Consensus 176 p~-l~---~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 176 PE-LP---ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CC-CC---TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred ch-hh---CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 43 21 45555555555554 3333 332 122499999999998 5787787899999999999998764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-21 Score=220.37 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHhhcCCCcccccCCCCCC-CCCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCc
Q 040540 8 TTDQSSLLAFKAHAFDYRSALANNWSIS-YPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENN 86 (669)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~l~~~w~~~-~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~ 86 (669)
+.++++|+++..........-..+|... ...+.|.+..+.. .+++.|+|.++.+... +.. .|+.++|+.|.
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~ 202 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYS 202 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhh-----HhhcCccCccc
Confidence 3467889998866533332222335433 3456788776654 5789999999888753 322 23444444444
Q ss_pred Ccc---------cCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 87 FHG---------HLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 87 l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+.+ ..|..+..+..|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..+++|++|++|++++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 432 34666777777777777777776 56666667777777777777777 66666777777777777777
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCC-CcEEEcccCCCccccc
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNIST-MRILTLESNQLSGRLP 236 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p 236 (669)
.++ .+|..|++|++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..+++++|.++|.+|
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 766 55666666666777776666665 55656666666666666666666665555543321 1124455555555444
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-22 Score=224.90 Aligned_cols=376 Identities=13% Similarity=0.136 Sum_probs=252.5
Q ss_pred CCEEEEEcCCCCCccccccccc-CCCCCCEEeCCCC-cCccc-CCcccCCCCCCCEEEccCCcCCccCCcccc----CCc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFG-NLSFLVSLDISEN-NFHGH-LPKELGQLRRLRVMSLAYNKLSGSFPSWIG----VLS 123 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~----~l~ 123 (669)
.+++.|+++++.+++..+..+. .+++|++|+|++| .+... ++..+.++++|++|+|++|.+.+..+.++. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4789999999988877666665 6889999999998 45432 444455789999999999987765444443 567
Q ss_pred ccccccccccC--cccc-CCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCC------------------
Q 040540 124 KLRILRLDYNN--FTGP-IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN------------------ 182 (669)
Q Consensus 124 ~L~~L~L~~n~--l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~------------------ 182 (669)
+|++|++++|. ++.. ++..+.++++|+.|++++|...+.+|..+..+++|++|+++.+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 89999999886 2211 12223456889999998873333366677777778887755442
Q ss_pred --------Cc----ccCCccccCCCCCCEEEccCCCCCCCCCc-cccCCCCCcEEEcccCCCccccchhhhccCCCCCee
Q 040540 183 --------LQ----GQIPTEIGSLQNLKNLDLADNKLSGLIPP-TIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249 (669)
Q Consensus 183 --------l~----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 249 (669)
+. +.+|..+..+++|++|++++|.+++.... .+..+++|+.|++++| +.......+...+++|++|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 11 12344444678999999999997653222 3558899999999998 4433333344458999999
Q ss_pred eccc---------CcccccCCccc-cCCCCCCEEeCCCCCccccCccccC-CCCCCCEEEccC------CccccCCCCCc
Q 040540 250 ALST---------NNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIPNTFG-NLRHLSVLNVMM------NNLTTESSSAD 312 (669)
Q Consensus 250 ~ls~---------n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~l~~------N~l~~~~~~~~ 312 (669)
++++ +.+++.....+ ..+++|+.|+++.|.+++..+..+. .+++|+.|+++. |.++..+.
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~--- 420 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL--- 420 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT---
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch---
Confidence 9843 34433222222 2478999999998988866555554 588999999983 34432210
Q ss_pred ccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccc-cccCCCcEEecCCCccccc
Q 040540 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI-GTLQQLQGFYVPENNLQGY 391 (669)
Q Consensus 313 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~~~~~ 391 (669)
...+...+..+++|+.|++++ .+.+.....+. ..+++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~---~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG---TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH---HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHH---HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 001112245678999999977 55543333332 246789999999999876544444 6689999999999998654
Q ss_pred Cch-hhcCCCCCCeeeCcCCccceeCcccc-cCCCCCCEEECCCC
Q 040540 392 VPH-DLCHLERLNILNLSGNKLSGHIPPCL-ASLTSLRELHLGSN 434 (669)
Q Consensus 392 ~p~-~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~l~~N 434 (669)
... ....+++|+.|++++|.++......+ ..++.|+...+..+
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 443 34458899999999999854433333 34566665555443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=174.18 Aligned_cols=162 Identities=22% Similarity=0.198 Sum_probs=117.7
Q ss_pred CCCCCCCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 040540 32 WSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111 (669)
Q Consensus 32 w~~~~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 111 (669)
|......|+|.++.|.. +++. .+|..+. ++|++|+|++|.+.+..|..|..+++|++|+|++|++
T Consensus 12 ~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 55566789998877753 3332 4444333 7899999999999988888899999999999999999
Q ss_pred CccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccc
Q 040540 112 SGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI 191 (669)
Q Consensus 112 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~ 191 (669)
....+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..|
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 7666677888999999999999888666666677777777777777766 556666666666666666666665555556
Q ss_pred cCCCCCCEEEccCCCCCC
Q 040540 192 GSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 192 ~~l~~L~~L~l~~N~l~~ 209 (669)
..+++|+.|++++|.+.+
T Consensus 156 ~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCTTCCEEECTTSCBCT
T ss_pred hCCCCCCEEEeeCCCccC
Confidence 666666666666666554
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-20 Score=199.32 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=107.0
Q ss_pred ceeeccCCCCChHHhhh------cCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc--------------
Q 040540 478 ALVLEFMPNGSLEKWLY------SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV-------------- 537 (669)
Q Consensus 478 ~lv~ey~~~g~L~~~l~------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~-------------- 537 (669)
+++|+++ +++|.+++. .....+++..+..|+.|+++||+|||. .+|+|||+|+..
T Consensus 181 ~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~----~~iiHrDiKp~NILl~~~~~~kL~DF 255 (413)
T 3dzo_A 181 FFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH----YGLVHTYLRPVDIVLDQRGGVFLTGF 255 (413)
T ss_dssp EEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH----TTEECSCCCGGGEEECTTCCEEECCG
T ss_pred EEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh----CCcccCCcccceEEEecCCeEEEEec
Confidence 4556654 589999984 234567888999999999999999995 479999999641
Q ss_pred --------cccccccccccCccccc----------cCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHh
Q 040540 538 --------TQTTTMATIGYMAPEYG----------SEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES 599 (669)
Q Consensus 538 --------~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~ 599 (669)
......| +.|+|||++ ....++.++|||||||++|||+||+.||........
T Consensus 256 G~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~--------- 325 (413)
T 3dzo_A 256 EHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGG--------- 325 (413)
T ss_dssp GGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSC---------
T ss_pred cceeecCCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhh---------
Confidence 1122357 999999998 555688999999999999999999999975321110
Q ss_pred CCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 600 LPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...++. . ....+..+.+++.+||+.||++||++.|+++
T Consensus 326 ----~~~~~~----~-------~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 326 ----SEWIFR----S-------CKNIPQPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp ----SGGGGS----S-------CCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ----HHHHHh----h-------cccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 011110 0 0112356789999999999999999888854
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-19 Score=168.96 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=108.8
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.++++++++. .+|..+. ++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34677777776 3455443 67889999999988777778888888999999988888777888888888888888888
Q ss_pred CccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 208 (669)
+++...+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888555555666777777777776666666666666666666666666666555555555556666666555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=168.54 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=100.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCC-cccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLP-KELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
+.++++++.++. +|..+. ..+++|+|++|.+++..| ..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 367888888764 555443 346788888888876654 3467778888888888887766666777777777777777
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
|.+++..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|++++..|..|..+++|+.|++++|.+.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77776655556666666666666666665555555555555555555555555555555555555555555555543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-19 Score=184.78 Aligned_cols=176 Identities=24% Similarity=0.192 Sum_probs=142.7
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccC-CCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELG-QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
+.++++++++.. +|..+. ..++.|+|++|.+++..+..|. .+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 468888888874 565543 4589999999999988888887 899999999999999987788899999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccc---cCCCCCCEEEccCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI---GSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~~ 209 (669)
|++++..+..|.++++|++|++++|.+.+..|..|.++++|++|+|++|++++..+..| ..+++|+.|+|++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998777788889999999999999888888888888888888888888886555445 567888888888888887
Q ss_pred CCCccccCCCC--CcEEEcccCCCc
Q 040540 210 LIPPTIFNIST--MRILTLESNQLS 232 (669)
Q Consensus 210 ~~p~~~~~l~~--L~~L~l~~n~l~ 232 (669)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66566666665 366777777664
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-19 Score=168.98 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=141.5
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCC-ccccCCcccccccccccCccccCCcccCCCCCCCeeeccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFP-SWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF 156 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (669)
+++++++|.++. +|..+. ..+++|+|++|++++..| ..|..+++|++|+|++|++++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999999974 676554 457899999999997755 5689999999999999999988888999999999999999
Q ss_pred ccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccc
Q 040540 157 NIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLP 236 (669)
Q Consensus 157 n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (669)
|.+++..+..|.++++|++|++++|++++..|..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999876544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=167.89 Aligned_cols=152 Identities=22% Similarity=0.219 Sum_probs=129.5
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+.+++++|.++ .+|..+. ..|+.|++++|++.+..+..|..+++|++|+|++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57889999887 5666554 68999999999998777778999999999999999999888888999999999999999
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCc
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
.++...+..|..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 988766667788889999999999988888888888888899999888888877777888888888888888765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-21 Score=211.94 Aligned_cols=190 Identities=18% Similarity=0.165 Sum_probs=106.2
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCc-------------CCccCCccccCCccccccc-ccccCccc
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK-------------LSGSFPSWIGVLSKLRILR-LDYNNFTG 137 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~ 137 (669)
...++|+.|+|++|.+. .+|..++++++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34555555555555554 455555555555555554443 3344444555555555555 4444332
Q ss_pred cCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccC
Q 040540 138 PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFN 217 (669)
Q Consensus 138 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 217 (669)
+|+.+.+..|.+....+ ..|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..+.+
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 22333334444432211 136667777776664 454 666667777777777666 45666666
Q ss_pred CCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC-CccccCCCCCCEEeCCCCCccccCc
Q 040540 218 ISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI-PNSITNATKLIGLDLGFNSFSGHIP 285 (669)
Q Consensus 218 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p 285 (669)
+++|+.|++++|.+++ +| .+. .+++|++|+|++|++++.. |..+..+++|+.|++++|.+++.+|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCEEECCCCCCCC-Cc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6666666666666664 55 343 4666666666666666554 6666666666666666666655433
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=180.83 Aligned_cols=175 Identities=23% Similarity=0.249 Sum_probs=136.1
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCcccc-CCcccccccccccCccccCCcccCCCCCCCeeeccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIG-VLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF 156 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (669)
+++++++|.+. .+|..+. ..++.|+|++|++++..+..+. ++++|++|+|++|++++..|..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57899999987 4666554 4589999999999987777787 899999999999999988888899999999999999
Q ss_pred ccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccc---cCCCCCcEEEcccCCCcc
Q 040540 157 NIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTI---FNISTMRILTLESNQLSG 233 (669)
Q Consensus 157 n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~l~~n~l~~ 233 (669)
|.+.+..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..+ ..+++|+.|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 99988777788889999999999999988888888888899999999998886544444 45777777777777776
Q ss_pred ccchhhhccCCC--CCeeecccCcc
Q 040540 234 RLPSTIGHSLRN--IEYLALSTNNL 256 (669)
Q Consensus 234 ~~p~~~~~~l~~--L~~L~ls~n~l 256 (669)
.+|...+..++. ++.|+|++|.+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 344333324444 25556665554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-19 Score=176.32 Aligned_cols=185 Identities=24% Similarity=0.347 Sum_probs=102.0
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
+.+..+.+.+..+ +..+++|++|++++|.+... + .+..+++|++|++++|++.+..+ +.++++|++|+|++|.+
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444444443322 34566677777777766533 3 36666777777777777664333 66677777777777766
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTI 215 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 215 (669)
++ + +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++..| +
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 54 2 2355666666666666655542 3455556666666666665543 345555666666666666554433 4
Q ss_pred cCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccc
Q 040540 216 FNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLI 257 (669)
Q Consensus 216 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~ 257 (669)
..+++|+.|++++|.+++ ++. +. .+++|+.|++++|.+.
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~~-l~-~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LRA-LA-GLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CGG-GT-TCTTCSEEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCC-Chh-hc-cCCCCCEEECcCCccc
Confidence 555555555555555542 222 22 3444555555444443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=192.51 Aligned_cols=172 Identities=25% Similarity=0.369 Sum_probs=82.6
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
..|++|+.|++++|.+.. +| .+..+++|+.|+|++|++.+..| +..+++|+.|+|++|.+++ + +.+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 344455555555555442 22 24445555555555555543322 4455555555555555543 1 23445555555
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555554431 2344555555555555555433 334555555555555555554433 44555555555555555
Q ss_pred ccccchhhhccCCCCCeeecccCcccc
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIG 258 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~ 258 (669)
++ +| .+. .+++|+.|+|++|.+.+
T Consensus 188 ~~-l~-~l~-~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 188 SD-LR-ALA-GLKNLDVLELFSQECLN 211 (605)
T ss_dssp CB-CG-GGT-TCTTCSEEECCSEEEEC
T ss_pred CC-Ch-HHc-cCCCCCEEEccCCcCcC
Confidence 43 22 222 34555555555555543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=173.81 Aligned_cols=169 Identities=24% Similarity=0.330 Sum_probs=150.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+ +| .+..+++|++|+|
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 4689999999999755 3 58899999999999999987555 9999999999999999985 33 4999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|++++. +.+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..| +..+++|+.|++++|.+++.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 99999864 5688999999999999999875 679999999999999999987655 89999999999999999974
Q ss_pred CCccccCCCCCcEEEcccCCCcc
Q 040540 211 IPPTIFNISTMRILTLESNQLSG 233 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~ 233 (669)
| .+..+++|+.|++++|.++.
T Consensus 194 -~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 -R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -G-GGTTCTTCSEEEEEEEEEEC
T ss_pred -h-hhccCCCCCEEECcCCcccC
Confidence 4 48999999999999999863
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=164.49 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=131.3
Q ss_pred CCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccc
Q 040540 77 LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF 156 (669)
Q Consensus 77 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (669)
-+.++.+++.+. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356888888886 5666554 8899999999999988899999999999999999999866667788999999999999
Q ss_pred ccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcccc
Q 040540 157 NIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235 (669)
Q Consensus 157 n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 235 (669)
|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|+|++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9998777777888999999999999988 67888888899999999999998777777888888888888888876543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=189.58 Aligned_cols=193 Identities=22% Similarity=0.295 Sum_probs=153.3
Q ss_pred CCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeee
Q 040540 74 LSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLR 153 (669)
Q Consensus 74 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 153 (669)
+..+..+++..+.+.+..+ +..+..|+.|++++|.+.. +| .+..+++|+.|+|++|++++..| +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3345556777777765544 4678889999999999874 44 58889999999999999986554 88999999999
Q ss_pred cccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcc
Q 040540 154 AEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233 (669)
Q Consensus 154 l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (669)
+++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++
T Consensus 94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99998875 3 3688899999999999998753 4588889999999999998875 678888889999999888876
Q ss_pred ccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCcccc
Q 040540 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGH 283 (669)
Q Consensus 234 ~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ 283 (669)
..| +. .+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+.+.
T Consensus 168 ~~~--l~-~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LA-GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GT-TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hc-cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 555 43 688888888888888764 3577888888888888887754
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=161.32 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=98.2
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
+.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55667777777777776 444 4677777777777777554 3346677777777777777777666666777777777
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+++..|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|.+++. + .+..+++|+.|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 7777776666666666666667777776666223444 466666666666666666642 2 455555555555555554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-19 Score=199.34 Aligned_cols=219 Identities=19% Similarity=0.171 Sum_probs=125.9
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEE-----EccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCC
Q 040540 75 SFLVSLDISENNFHGHLPKELGQLRRLRVM-----SLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRL 149 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L-----~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 149 (669)
+.++.|+|++|.+.. .+..+.....|+.+ +++.|.+. ..|+.+..+.+|+.|+|++|.++ .+|..++++++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 567889999998875 34433333333332 33334443 45788999999999999999998 788888899999
Q ss_pred CeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccC
Q 040540 150 EMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESN 229 (669)
Q Consensus 150 ~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n 229 (669)
++|++++|.++ .+|..|++|++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|.++++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999999 89999999999999999999998 78999999999999999999998 67888999999999999999
Q ss_pred CCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCC--------CccccCccccCCCCCCCEEEccC
Q 040540 230 QLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN--------SFSGHIPNTFGNLRHLSVLNVMM 301 (669)
Q Consensus 230 ~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n--------~l~~~~p~~~~~l~~L~~L~l~~ 301 (669)
.+++.+|..+...-.....+++++|.+.+.+|..+ ..|+++.| .+.+..+..+..+..+....+++
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 99998888775321223347899999998888654 45566665 22333333344455555555555
Q ss_pred Cccc
Q 040540 302 NNLT 305 (669)
Q Consensus 302 N~l~ 305 (669)
|.+.
T Consensus 401 Nil~ 404 (727)
T 4b8c_D 401 NTLC 404 (727)
T ss_dssp -CCC
T ss_pred cccc
Confidence 5543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-18 Score=158.41 Aligned_cols=152 Identities=13% Similarity=0.175 Sum_probs=132.8
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|++. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++.+..|..++.+++|++|+|
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 46899999999998 555 6899999999999999775 4457999999999999999999888999999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
++|.+++..|..+..+++|++|++++|...+.+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9999998889999999999999999998444555 68999999999999999986 44 68899999999999999864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-20 Score=201.62 Aligned_cols=206 Identities=19% Similarity=0.162 Sum_probs=153.7
Q ss_pred CCCCCCCEEEccCCcCCccCCccccCCcccccccccccC-------------ccccCCcccCCCCCCCeee-cccccccc
Q 040540 96 GQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN-------------FTGPIPNSLFNLSRLEMLR-AEFNIIGG 161 (669)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-l~~n~l~~ 161 (669)
..++.|+.|+|++|++. .+|+.++++++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56778888888888886 678888888888888887765 3445555566666666665 444432
Q ss_pred cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhc
Q 040540 162 TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGH 241 (669)
Q Consensus 162 ~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 241 (669)
..|..+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~- 483 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA- 483 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-
Confidence 223334455555553322 248999999999997 565 899999999999999998 7888777
Q ss_pred cCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccC-ccccCCCCCCCEEEccCCccccCCCCCccccccccc
Q 040540 242 SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHI-PNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSL 320 (669)
Q Consensus 242 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l 320 (669)
.+++|++|+|++|++++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.+.... ..+
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~-----~l~ 556 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE-----RLA 556 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT-----HHH
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH-----HHH
Confidence 69999999999999987 56 7889999999999999998876 8889999999999999998887643221 112
Q ss_pred CCCCCCCEEE
Q 040540 321 TNCRNLSNLA 330 (669)
Q Consensus 321 ~~l~~L~~L~ 330 (669)
..+++|+.|+
T Consensus 557 ~~lp~L~~L~ 566 (567)
T 1dce_A 557 EMLPSVSSIL 566 (567)
T ss_dssp HHCTTCSEEE
T ss_pred HHCcccCccC
Confidence 2356666664
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=162.49 Aligned_cols=165 Identities=19% Similarity=0.255 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
++.++++++++.+.. .+..+++|++|++++|.++. +| .+..+++|++|+|++|++.+..| +.++++|++|+|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 445666666665433 46677777777777777763 34 56677777777777777765433 77777777777777
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
|++++ +|.. .. ++|+.|++++|.+++. ..+..+++|++|++++|++++. + .++.+++|++|++++|.+++.
T Consensus 95 N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 77764 3322 22 5666666666655542 2355555555555555555543 2 355555555555555555543
Q ss_pred ccccCCCCCcEEEcccCCCc
Q 040540 213 PTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~ 232 (669)
..+..+++|+.|++++|.++
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCccc
Confidence 33444444444444444443
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-18 Score=178.99 Aligned_cols=167 Identities=13% Similarity=0.007 Sum_probs=116.2
Q ss_pred ccccceecccccc-------------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh-cCCCCC
Q 040540 461 HRNLIKIISSCSN-------------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR-HGHSSA 526 (669)
Q Consensus 461 h~niv~l~~~~~~-------------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh-~~~~~~ 526 (669)
|||++++++++.. ....++||||+++|++.+.+.+ ..+++.....|+.|+++||+||| ..
T Consensus 108 hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~---- 181 (336)
T 2vuw_A 108 PPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLAVAEASL---- 181 (336)
T ss_dssp CHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHhC----
Confidence 6666666666654 6778999999999987777754 45799999999999999999999 43
Q ss_pred CeeecCCCCccc----------------------------------------ccccccccccCccccccCCCcCccccch
Q 040540 527 PIIHCEGEDSVT----------------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
+|+|||+|+... ....+||+.|||||++.+.. +.++|||
T Consensus 182 ~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~g~~-~~~~Diw 260 (336)
T 2vuw_A 182 RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDG-DYQFDIY 260 (336)
T ss_dssp CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGCCCS-SHHHHHH
T ss_pred CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhcCCC-ccceehh
Confidence 799999995310 01125899999999998765 8899999
Q ss_pred hhHHH-HHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVL-LMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvi-l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
|+|++ .+++.+|..||...... ..+.+.+...... . .. ...+.+...+..+.+++.+|++.|
T Consensus 261 sl~~~~~~~~~~g~~p~~~~~~~-~~~~~~~~~~~~~--~----~~-----~~~~~~~~~s~~~~dli~~~L~~d----- 323 (336)
T 2vuw_A 261 RLMKKENNNRWGEYHPYSNVLWL-HYLTDKMLKQMTF--K----TK-----CNTPAMKQIKRKIQEFHRTMLNFS----- 323 (336)
T ss_dssp HHHHHHHTTCTTSCCTHHHHHHH-HHHHHHHHHTCCC--S----SC-----CCSHHHHHHHHHHHHHHHHGGGSS-----
T ss_pred hhhCCCCcccccccCCCcchhhh-hHHHHhhhhhhcc--C----cc-----cchhhhhhcCHHHHHHHHHHhccC-----
Confidence 98777 77889999987431000 0001111100000 0 00 001224567788999999999976
Q ss_pred CHHHHH
Q 040540 646 HMTDAA 651 (669)
Q Consensus 646 s~~~v~ 651 (669)
|++|++
T Consensus 324 sa~e~l 329 (336)
T 2vuw_A 324 SATDLL 329 (336)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 888886
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=149.71 Aligned_cols=129 Identities=23% Similarity=0.310 Sum_probs=71.8
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCc-ccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPK-ELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
+.+++++++++ .+|..+.. +|++|++++|.+.+..+. .|+.+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666663 44544332 666666666666654443 255666666666666666555555555555555555555
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
|++++..| ..|.++++|++|++++|++++..|..|..+++|++|++++|.+++
T Consensus 88 N~l~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISN------------------------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECS------------------------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCH------------------------HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55554443 334444445555555555555555555555555666665555554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-17 Score=164.28 Aligned_cols=169 Identities=19% Similarity=0.294 Sum_probs=105.9
Q ss_pred CCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCee
Q 040540 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEML 152 (669)
Q Consensus 73 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 152 (669)
.+..++.+++++|.+.+.. .+..+++|++|++++|.+. .+| .+..+++|++|+|++|++++..| +.++++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556677788888887543 4677888888888888887 455 67788888888888888875443 7777777777
Q ss_pred ecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCc
Q 040540 153 RAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 153 ~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
++++|.+++ +|.. .. ++|++|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|+.|++++|.++
T Consensus 91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777777764 3322 22 6666666666666642 2 366666666666666666643 2 4555555555555555554
Q ss_pred cccchhhhccCCCCCeeecccCccc
Q 040540 233 GRLPSTIGHSLRNIEYLALSTNNLI 257 (669)
Q Consensus 233 ~~~p~~~~~~l~~L~~L~ls~n~l~ 257 (669)
+. ..+. .+++|++|++++|.+.
T Consensus 164 ~~--~~l~-~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLT-RLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTST-TCCCCCEEEEEEEEEE
T ss_pred ch--HHhc-cCCCCCEEeCCCCccc
Confidence 32 1121 3444444444444443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=149.85 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=87.0
Q ss_pred ccccccccccCccccCCc-ccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEc
Q 040540 124 KLRILRLDYNNFTGPIPN-SLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDL 202 (669)
Q Consensus 124 ~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 202 (669)
+|++|+|++|++++..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444444555544433332 2455555555555555555666777788888888888889999888888999999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcccCCCccccch
Q 040540 203 ADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237 (669)
Q Consensus 203 ~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (669)
++|.+++..|..+..+++|++|++++|.+.+..+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999999999999999999999999876553
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=145.57 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=49.6
Q ss_pred CCCEEeCCCCcCc-ccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 76 FLVSLDISENNFH-GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 76 ~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
+|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|+|++|.+++.+|..+.++++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444443 33333333444444444444443322 33333444444444444443333333333333333333
Q ss_pred cccccccc-CCcccCCCCCCCEEEcccCCCcccCC---ccccCCCCCCEEEccCCCC
Q 040540 155 EFNIIGGT-IPSRIGNLRKLVNLGLWSCNLQGQIP---TEIGSLQNLKNLDLADNKL 207 (669)
Q Consensus 155 ~~n~l~~~-~p~~~~~L~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~N~l 207 (669)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 33333221 11233334444444444444433222 2344444444444444443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-16 Score=143.93 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=91.0
Q ss_pred CCCCCCEEEccCCcCC-ccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCE
Q 040540 97 QLRRLRVMSLAYNKLS-GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVN 175 (669)
Q Consensus 97 ~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~ 175 (669)
..++|+.|++++|.+. +.+|..+..+++|++|+|++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477889999999887 67888888888899999988888754 66777777777777777776666666666667777
Q ss_pred EEcccCCCcccC-CccccCCCCCCEEEccCCCCCCCCC---ccccCCCCCcEEEcccCCC
Q 040540 176 LGLWSCNLQGQI-PTEIGSLQNLKNLDLADNKLSGLIP---PTIFNISTMRILTLESNQL 231 (669)
Q Consensus 176 L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777766666432 2456666666666666666665433 2455555555555555544
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=143.04 Aligned_cols=125 Identities=21% Similarity=0.210 Sum_probs=53.5
Q ss_pred CCCEEeCCCCcCc-ccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 76 FLVSLDISENNFH-GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 76 ~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
+|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|+|++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444444 34444444444444444444444432 33444444444444444444333333333344444444
Q ss_pred cccccccc-CCcccCCCCCCCEEEcccCCCcccCC---ccccCCCCCCEEEc
Q 040540 155 EFNIIGGT-IPSRIGNLRKLVNLGLWSCNLQGQIP---TEIGSLQNLKNLDL 202 (669)
Q Consensus 155 ~~n~l~~~-~p~~~~~L~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l 202 (669)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 44433321 22334444444444444444443333 23444455555544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=140.96 Aligned_cols=126 Identities=24% Similarity=0.337 Sum_probs=65.6
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccC
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 134 (669)
.++++++++. .+|..+. ++|++|++++|.++ .+|..|..+++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4666666665 3443332 35666666666655 444555555555555555555555444555555555555555555
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 208 (669)
+++.. |..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 90 l~~i~------------------------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIP------------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCC------------------------TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeC------------------------HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 54433 334444444444444444444433444555555555555555543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-16 Score=140.58 Aligned_cols=128 Identities=19% Similarity=0.151 Sum_probs=116.4
Q ss_pred CCEEEEEcCCCCCc-ccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 51 QRVTALNLSDMGLG-GTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 51 ~~v~~L~ls~~~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
.+++.|++++|++. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|++.+.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56899999999998 78888899999999999999999876 7789999999999999999987898888999999999
Q ss_pred ccccCcccc-CCcccCCCCCCCeeecccccccccCC---cccCCCCCCCEEEccc
Q 040540 130 LDYNNFTGP-IPNSLFNLSRLEMLRAEFNIIGGTIP---SRIGNLRKLVNLGLWS 180 (669)
Q Consensus 130 L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~L~~L~~L~l~~ 180 (669)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999874 45889999999999999999987766 5789999999998863
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-15 Score=137.51 Aligned_cols=127 Identities=21% Similarity=0.238 Sum_probs=68.6
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
++++++++.. +|..+ .++|++|++++|.+.+..+..|+.+++|++|++++|++++..+..|+.+++|++|+|++|++
T Consensus 12 l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 12 IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 4444455542 33322 25677777777777655555566666666666666666654445556666666666666655
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 89 ~~~~~~------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 89 QSLPNG------------------------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCTT------------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCHH------------------------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 543333 33344444444444444443333334455555555555555554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-15 Score=139.37 Aligned_cols=109 Identities=25% Similarity=0.307 Sum_probs=98.5
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57999999999997 67788999999999999999999888889999999999999999999888889999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeeccccccc
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIG 160 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 160 (669)
++|.+++..+..|..+++|+.|++++|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999766666778888888888877764
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-17 Score=176.24 Aligned_cols=127 Identities=16% Similarity=-0.003 Sum_probs=90.8
Q ss_pred cccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+.|.+|+++++++ .|+|++++++++......||||||++|++|.++|.+. .+++.. +|+.||+.||+|+|.
T Consensus 285 ~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~-~~l~~~---~I~~QIl~AL~ylH~--- 357 (569)
T 4azs_A 285 KYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAG-EEIDRE---KILGSLLRSLAALEK--- 357 (569)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTT-CCCCHH---HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhC-CCCCHH---HHHHHHHHHHHHHHH---
Confidence 35688899999999 7999999999999999999999999999999999854 456543 589999999999995
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|||||+|+.. ...+.+||++|||||++.+. +..++|+||.|++.+++.+|.
T Consensus 358 -~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~ 435 (569)
T 4azs_A 358 -QGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPW 435 (569)
T ss_dssp -TTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC------------------CCCCTTH
T ss_pred -CCceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCCC-CCCcccccccccchhhhcccc
Confidence 489999999541 11234699999999998754 677899999999988876654
Q ss_pred CC
Q 040540 580 RP 581 (669)
Q Consensus 580 ~p 581 (669)
.|
T Consensus 436 ~~ 437 (569)
T 4azs_A 436 SN 437 (569)
T ss_dssp HH
T ss_pred ch
Confidence 43
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=134.29 Aligned_cols=113 Identities=22% Similarity=0.206 Sum_probs=79.3
Q ss_pred ccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEcc
Q 040540 124 KLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLA 203 (669)
Q Consensus 124 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 203 (669)
+|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333344445555555555555554445556778888888888888887777778899999999999
Q ss_pred CCCCCCCCCccccCCCCCcEEEcccCCCccccc
Q 040540 204 DNKLSGLIPPTIFNISTMRILTLESNQLSGRLP 236 (669)
Q Consensus 204 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (669)
+|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999997766667788899999999998876554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-15 Score=151.76 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=59.0
Q ss_pred CCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCC-EEEccCCccccCCCCCcccccccccC
Q 040540 243 LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS-VLNVMMNNLTTESSSADQWSFLSSLT 321 (669)
Q Consensus 243 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~l~ 321 (669)
+++|+.+++++|+++...+..|.++.+|+.+++.+| +....+.+|.++++|+ .+++.. +++.++. ..+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~--------~aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF--------GAFM 294 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT--------TTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch--------hhhh
Confidence 567777777777776666666777777777777776 5545556677777777 777755 4443322 3456
Q ss_pred CCCCCCEEECcCCCCccccchhH
Q 040540 322 NCRNLSNLALASNPLGGILPQLI 344 (669)
Q Consensus 322 ~l~~L~~L~l~~n~l~~~~~~~~ 344 (669)
+|++|+.+++..|.+..+.+..+
T Consensus 295 ~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 295 GCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp TCTTEEEEEECSSCCCEECTTTT
T ss_pred CCccCCEEEeCCCccCccchhhh
Confidence 67777777777776665554433
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=149.11 Aligned_cols=260 Identities=13% Similarity=0.039 Sum_probs=165.2
Q ss_pred CEEEEEcCCCCCcccccccccC-CCCCCEEeCCCCcCc--ccCCcccCCCCCCCEEEccCCcCCccCCccccC-------
Q 040540 52 RVTALNLSDMGLGGTIPLHFGN-LSFLVSLDISENNFH--GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGV------- 121 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~-l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------- 121 (669)
+++.|.++++- .+.-...+.. +++|++|||++|.+. ...+..+ +.++.+.+..|.+ .+..|.+
T Consensus 26 ~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEE
T ss_pred ceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhccccccccc
Confidence 46777776431 1111112333 788999999999887 3222222 2245555555533 2345555
Q ss_pred -CcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCC----cccCCccccCCC-
Q 040540 122 -LSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNL----QGQIPTEIGSLQ- 195 (669)
Q Consensus 122 -l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l----~~~~p~~~~~l~- 195 (669)
+++|+.|+|.+ .++..-+..|.++++|+.++++.|.+....+.+|.++.++..+....+.. ...-...|..+.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88888888877 77766666788888888888888877766677777776666665544211 111111222222
Q ss_pred -------------------------CCCEEEccCCCCCCCCCccc-cCCCCCcEEEcccCCCccccchhhhccCCCCCee
Q 040540 196 -------------------------NLKNLDLADNKLSGLIPPTI-FNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249 (669)
Q Consensus 196 -------------------------~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 249 (669)
++..+.+.++-.. .....+ ..+++|+.+++++|.++ .+|...+.++.+|+.|
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEE
Confidence 3334443332111 001111 13678888888888876 6787777788888888
Q ss_pred ecccCcccccCCccccCCCCCC-EEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCE
Q 040540 250 ALSTNNLIGKIPNSITNATKLI-GLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSN 328 (669)
Q Consensus 250 ~ls~n~l~~~~p~~~~~l~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~ 328 (669)
++.+| +....+.+|.++.+|+ .+++.. .+....+.+|.++++|+.+++..|+++..+. ..+.+|++|+.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~--------~aF~~~~~L~~ 325 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD--------ELFGNGVPSKL 325 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT--------TTTCTTCCCCE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch--------hhhcCCcchhh
Confidence 88887 6666677888888898 888887 5665666788888999999888888877643 34677888888
Q ss_pred EEC
Q 040540 329 LAL 331 (669)
Q Consensus 329 L~l 331 (669)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-15 Score=135.01 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=41.0
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccCCCC-CCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPKELGQLR-RLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRL 149 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 149 (669)
+.+..+|++|++++|.+.. +|. +..+. +|++|++++|.+.+. +.+..+++|++|+|++|.+++..|..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455556666666665552 233 23322 555555555555532 345555555555555555553322222444444
Q ss_pred Ceeecccccc
Q 040540 150 EMLRAEFNII 159 (669)
Q Consensus 150 ~~L~l~~n~l 159 (669)
++|++++|.+
T Consensus 91 ~~L~L~~N~i 100 (176)
T 1a9n_A 91 TELILTNNSL 100 (176)
T ss_dssp CEEECCSCCC
T ss_pred CEEECCCCcC
Confidence 4444444443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-17 Score=153.10 Aligned_cols=132 Identities=25% Similarity=0.311 Sum_probs=79.4
Q ss_pred CEEEEEcCCCCCcccccc------cccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccc
Q 040540 52 RVTALNLSDMGLGGTIPL------HFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKL 125 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 125 (669)
.++.++++.+.+.|.+|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344455555555555554 66677777777777777765 45 6666777777777777766 456666666777
Q ss_pred ccccccccCccccCCcccCCCCCCCeeecccccccccCC-cccCCCCCCCEEEcccCCCcccCC
Q 040540 126 RILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQGQIP 188 (669)
Q Consensus 126 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~~~~p 188 (669)
++|+|++|++++ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.+|
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 777777777664 33 45556666666666666553221 345555555555555555544433
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-17 Score=153.54 Aligned_cols=133 Identities=25% Similarity=0.319 Sum_probs=77.7
Q ss_pred ccCCCCCCEEeCCCCcCcccCCc------ccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPK------ELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF 144 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 144 (669)
+.....++.++++.|.+.|..|. .+..+++|++|++++|++.+ +| .+.++++|++|+|++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45566777777777777777665 67777777777777777764 55 6677777777777777766 4555555
Q ss_pred CCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCCCC
Q 040540 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP-TEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~ 208 (669)
.+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.++
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 55556666665555543 22 34444445555554444442211 23444444444444444443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-14 Score=130.29 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=76.6
Q ss_pred ccCCCCCCCEEEccCCcCCccCCccccCCc-ccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCC
Q 040540 94 ELGQLRRLRVMSLAYNKLSGSFPSWIGVLS-KLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK 172 (669)
Q Consensus 94 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~ 172 (669)
.+.++.+|+.|++++|++.. +|. +..+. +|++|+|++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35567788888888888873 454 44444 788888888887754 45666666666666666665443333455556
Q ss_pred CCEEEcccCCCcccCCc--cccCCCCCCEEEccCCCCCCCCCcc----ccCCCCCcEEEcccCCC
Q 040540 173 LVNLGLWSCNLQGQIPT--EIGSLQNLKNLDLADNKLSGLIPPT----IFNISTMRILTLESNQL 231 (669)
Q Consensus 173 L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~l~~n~l 231 (669)
|++|++++|.+. .+|. .+..+++|+.|++++|.++. +|.. +..+++|+.|+++.|..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666666553 3333 45555555555555555542 2322 44444455554444443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=124.31 Aligned_cols=105 Identities=20% Similarity=0.180 Sum_probs=78.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.++++++++.. +|..+ .++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 567888888864 55544 377888888888888777888888888888888888888666667788888888888888
Q ss_pred CccccCCcccCCCCCCCeeecccccccc
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGG 161 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 161 (669)
++++..+..|.++++|++|++++|.+.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8876555556666666666666666543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-12 Score=132.22 Aligned_cols=264 Identities=7% Similarity=0.032 Sum_probs=200.8
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
++.+.+. +++..+-...|.+. +|+.+++..| +......+|.+. +|+.+.+.. .+...-+..|.++.+|+.++|.+
T Consensus 115 l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 3444443 24444445567774 7999999876 766667778774 799999985 66655667899999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
|+++......|. ..+|+.+.+..+ +...-..+|.++.+|+.+.+..+ ++..-...|.. .+|+.+.+ .+.++....
T Consensus 190 n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~ 264 (401)
T 4fdw_A 190 TKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIAS 264 (401)
T ss_dssp SCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECT
T ss_pred CcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEECh
Confidence 999855444555 689999999854 66667788999999999999864 56566667777 78999999 556776677
Q ss_pred ccccCCCCCcEEEcccCCCc----cccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCcccc
Q 040540 213 PTIFNISTMRILTLESNQLS----GRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTF 288 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~ 288 (669)
..|.++++|+.+++.+|.+. ..++...+.++++|+.+++. +.+.......|.++.+|+.+.+..| +...-..+|
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 88999999999999988763 23777777789999999998 4577667788999999999999665 555566789
Q ss_pred CCCCCCCEEEccCCccccCCCCCcccccccccCCC-CCCCEEECcCCCCc
Q 040540 289 GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNC-RNLSNLALASNPLG 337 (669)
Q Consensus 289 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~ 337 (669)
.++ +|+.+.+..|.+..... ..+..+ .++..+.+..+.+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~--------~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFE--------KVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCC--------SSCCCSCTTCCEEEECGGGHH
T ss_pred CCC-CCCEEEEcCCCCccccc--------ccccCCCCCccEEEeCHHHHH
Confidence 999 99999999887765432 224445 36788888776543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=122.46 Aligned_cols=106 Identities=22% Similarity=0.260 Sum_probs=63.7
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
++|++++|.++. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~------------------ 70 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP------------------ 70 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC------------------
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC------------------
Confidence 566677766653 444432 56666666666666555566666666666666666665433
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.++..
T Consensus 71 ------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 71 ------AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ------hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 33445555555666666666655555566667777777777776644
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-13 Score=122.84 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=76.2
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.+++++++++ .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56888888884 5665553 77888888888888777888888888888888888888655566777888888888888
Q ss_pred CccccCCcccCCCCCCCeeeccccccc
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIG 160 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~ 160 (669)
++++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 877544444666666666666666554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-11 Score=128.93 Aligned_cols=251 Identities=11% Similarity=0.052 Sum_probs=196.1
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
.....++.+.+.+ .++.....+|.+. +|+.+.+..+ +...-...|.+ .+|+.+.+.. .++..-+..|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3457788888875 4665667778875 7999999876 66555667877 5799999986 777677788999999999
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
+++..|.+.......|. ..+|+.+.+.. .+...-...|..+++|+.+++..| ++..-...|.+ .+|+.+.+.+ .+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 99999998876666776 58999999984 477677788999999999999875 55555556666 8999999954 44
Q ss_pred ccccchhhhccCCCCCeeecccCccc-----ccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLI-----GKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
+ .++...+..+.+|+.+++.+|.+. ...+..|..+++|+.+++.. .+...-..+|.++++|+.+.+..| ++.
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 4 677777778999999999887764 35567899999999999994 466566778999999999999644 544
Q ss_pred CCCCCcccccccccCCCCCCCEEECcCCCCccccchhH
Q 040540 307 ESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLI 344 (669)
Q Consensus 307 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 344 (669)
... ..+.+| +|+.+.+.+|.+....+..+
T Consensus 337 I~~--------~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 337 INF--------SAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp ECT--------TSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred EcH--------HhCCCC-CCCEEEEcCCCCcccccccc
Confidence 432 347788 99999999998765544433
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.7e-13 Score=121.61 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=64.2
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+.+++++|.+. .+|..+. ++|++|+|++|++.+..|..|+++++|++|+|++|+|++..+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----------------- 74 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT----------------- 74 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-----------------
Confidence 56677777664 4555443 566666666666666556666666666666666666654333
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+..
T Consensus 75 -------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 75 -------GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred -------hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 334555555555566666655444456666677777777776664
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-13 Score=147.51 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=103.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.++.+++|||++++..++......++||||+++|+|.+++.. +..|+.|+++|++|||. .+
T Consensus 385 ~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH~----~g 451 (540)
T 3en9_A 385 RTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED---------NLDIAYKIGEIVGKLHK----ND 451 (540)
T ss_dssp HHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHH----Cc
Confidence 467899999999999999766666677778999999999999999975 55799999999999995 47
Q ss_pred eeecCCCCccc------------------------------ccccccccccCccccccC--CCcCccccchhhHHHHHHH
Q 040540 528 IIHCEGEDSVT------------------------------QTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 528 i~h~d~~~~~~------------------------------~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el 575 (669)
|+|||+|+... .....||+.|||||++.. ..|+.++|+|+..+-..|.
T Consensus 452 IiHrDiKp~NILl~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~ 531 (540)
T 3en9_A 452 VIHNDLTTSNFIFDKDLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKD 531 (540)
T ss_dssp EECTTCCTTSEEESSSEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred CccCCCCHHHEEECCeEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999996410 123358999999999976 5688999999999999999
Q ss_pred HhCCCCCC
Q 040540 576 FTRKRPTD 583 (669)
Q Consensus 576 ~tg~~p~~ 583 (669)
+.++.+|.
T Consensus 532 v~~r~rY~ 539 (540)
T 3en9_A 532 VERRARYV 539 (540)
T ss_dssp HHTCSCCC
T ss_pred HHhccccC
Confidence 99888874
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=126.66 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=85.8
Q ss_pred EEcCCC-CCcccccccccCCCCCCEEeCCC-CcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 56 LNLSDM-GLGGTIPLHFGNLSFLVSLDISE-NNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 56 L~ls~~-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
++++++ ++.+ +|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|+|++..|..|++|++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455666 6764 677 99999999999996 9999888888999999999999999999988889999999999999999
Q ss_pred CccccCCcccCCCCCCCeeecccccccc
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGG 161 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 161 (669)
+|++..+..+..++ |+.|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99865555555555 8888888877653
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-13 Score=138.48 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=56.9
Q ss_pred CCCCCEEeCCCCcCcccCCcccCC-----CCCCCEEEccCCcCCccCCcc-ccCCcccccccccccCccccCCccc----
Q 040540 74 LSFLVSLDISENNFHGHLPKELGQ-----LRRLRVMSLAYNKLSGSFPSW-IGVLSKLRILRLDYNNFTGPIPNSL---- 143 (669)
Q Consensus 74 l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~---- 143 (669)
++.|++|+|++|.++......+.. ..+|+.|+|++|.+....... ...+.+|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356777777777776443333222 257777777777765332222 2345667777777777654322222
Q ss_pred -CCCCCCCeeecccccccc----cCCcccCCCCCCCEEEcccCCCc
Q 040540 144 -FNLSRLEMLRAEFNIIGG----TIPSRIGNLRKLVNLGLWSCNLQ 184 (669)
Q Consensus 144 -~~l~~L~~L~l~~n~l~~----~~p~~~~~L~~L~~L~l~~n~l~ 184 (669)
...++|+.|++++|.++. .++..+..+++|++|+|++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 123445555555555432 12222334444444444444443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=124.37 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=56.8
Q ss_pred EeCCCC-cCcccCCcccCCCCCCCEEEccC-CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 80 LDISEN-NFHGHLPKELGQLRRLRVMSLAY-NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 80 L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
++++++ .++. +|. +..+++|+.|+|++ |.+.+..|..|++|++|++|+|++|+|++..|..|.+|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l----------- 79 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT----------- 79 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC-----------
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC-----------
Confidence 455555 5553 455 66666666666664 66655555556666666666666666555544444444
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
++|++|+|++|++++..+..|..++ |+.|+|.+|.+..
T Consensus 80 -------------~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 80 -------------PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp -------------SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred -------------cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 4555555555555544444444443 6666666666653
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-09 Score=113.33 Aligned_cols=312 Identities=10% Similarity=0.021 Sum_probs=169.8
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCC
Q 040540 68 PLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLS 147 (669)
Q Consensus 68 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 147 (669)
..+|.+.++|+.+.+..+ ++.....+|.++.+|+.+++..+ +...-...|.++.+|+.+.+..+ ++..-...|.+..
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 446888888888888753 66566677888888888888755 44344567788888888776543 4434444555554
Q ss_pred CCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 040540 148 RLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227 (669)
Q Consensus 148 ~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 227 (669)
.+........ ...-..+|.++.+|+.+.+..+. .......|..+.+|+.+++..| ++......+.+...|+.+.+.
T Consensus 141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 3333322221 12223456677777777775433 3344455666667777666544 333334445555555555554
Q ss_pred cCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccC
Q 040540 228 SNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTE 307 (669)
Q Consensus 228 ~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 307 (669)
.+... +....+ ...+|+.+.+..+ +.......+..+..++.+.+..+... .....|.....++.+....+.+..
T Consensus 217 ~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~- 290 (394)
T 4fs7_A 217 NSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE- 290 (394)
T ss_dssp TTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-
T ss_pred CCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-
Confidence 43321 111111 2234444444322 12222334445555555555444322 223344444444444433221110
Q ss_pred CCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCc
Q 040540 308 SSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENN 387 (669)
Q Consensus 308 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~ 387 (669)
..+..+.+|+.+.+.. + +...-..+|..+.+|+.+.++++
T Consensus 291 ----------~~F~~~~~L~~i~l~~----------------------------~-i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 291 ----------KTFYGCSSLTEVKLLD----------------------------S-VKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp ----------TTTTTCTTCCEEEECT----------------------------T-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred ----------cccccccccccccccc----------------------------c-cceechhhhcCCCCCCEEEeCCc-
Confidence 1123344444443322 1 22223345666777777777644
Q ss_pred ccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCC
Q 040540 388 LQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGS 433 (669)
Q Consensus 388 ~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~ 433 (669)
++..-...|.++.+|+.+++..+ +......+|.++.+|+.+++..
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 55555667778888888888766 5556666788888888887753
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.2e-13 Score=136.94 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=107.9
Q ss_pred CCEEEEEcCCCCCcccccccccC-----CCCCCEEeCCCCcCcccCCccc-CCCCCCCEEEccCCcCCccCCccc-----
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGN-----LSFLVSLDISENNFHGHLPKEL-GQLRRLRVMSLAYNKLSGSFPSWI----- 119 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~----- 119 (669)
..++.|+|++|.++......+.. ..+|++|+|++|.+.......+ ..+++|+.|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46899999999998654433332 3799999999999875433333 346789999999999975433333
Q ss_pred cCCcccccccccccCccc----cCCcccCCCCCCCeeeccccccccc----CCcccCCCCCCCEEEcccCCCccc----C
Q 040540 120 GVLSKLRILRLDYNNFTG----PIPNSLFNLSRLEMLRAEFNIIGGT----IPSRIGNLRKLVNLGLWSCNLQGQ----I 187 (669)
Q Consensus 120 ~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~L~~L~~L~l~~n~l~~~----~ 187 (669)
...++|++|+|++|.++. .++..+..+++|++|++++|.++.. ++..+...++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 346889999999999975 2445567889999999999998753 244455556666666666666532 2
Q ss_pred CccccCCCCCCEEEccCCCCC
Q 040540 188 PTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 188 p~~~~~l~~L~~L~l~~N~l~ 208 (669)
...+...++|++|+|++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 222233345555555555544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-08 Score=107.55 Aligned_cols=295 Identities=10% Similarity=-0.004 Sum_probs=152.7
Q ss_pred CcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcc
Q 040540 87 FHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR 166 (669)
Q Consensus 87 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 166 (669)
++.+-..+|.++.+|+.+.+..+ +...-..+|.++.+|+.++|..+ ++..-...|.++.+|+.+.+..+ +...-..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44445567888888888888643 55444567888888888888654 55444556777777777665433 22223334
Q ss_pred cCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCC
Q 040540 167 IGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNI 246 (669)
Q Consensus 167 ~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 246 (669)
|.+...+....... ....-...|..+++|+.+.+..+. .......|.+..+|+.+.+..|
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~----------------- 195 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN----------------- 195 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-----------------
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-----------------
Confidence 44443322222111 111223345555555555554332 2222333444444444444433
Q ss_pred CeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCC
Q 040540 247 EYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNL 326 (669)
Q Consensus 247 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L 326 (669)
+.......|.++..|+.+.+..+... +...+....+|+.+.+..+ ++.... ..+..+..+
T Consensus 196 ---------~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~--------~~f~~~~~l 255 (394)
T 4fs7_A 196 ---------LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGK--------SVFYGCTDL 255 (394)
T ss_dssp ---------CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECS--------STTTTCSSC
T ss_pred ---------ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceeccc--------ccccccccc
Confidence 22222334444444444444333221 1112222334444444211 111100 123344555
Q ss_pred CEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeee
Q 040540 327 SNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILN 406 (669)
Q Consensus 327 ~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ 406 (669)
+.+.+..+... .....+ .....+.........+ ....|..+.+|+.+.++++ ++..-...|.++.+|+.++
T Consensus 256 ~~~~~~~~~~~-i~~~~F----~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 256 ESISIQNNKLR-IGGSLF----YNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp CEEEECCTTCE-ECSCTT----TTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred eeEEcCCCcce-eecccc----ccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence 55555443221 111111 1122233333332221 2245667788998888765 5656667788999999999
Q ss_pred CcCCccceeCcccccCCCCCCEEECCCC
Q 040540 407 LSGNKLSGHIPPCLASLTSLRELHLGSN 434 (669)
Q Consensus 407 ls~n~l~~~~p~~l~~l~~L~~L~l~~N 434 (669)
+..+ +......+|.++.+|+.+.+..|
T Consensus 327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 327 LPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 9765 66666778999999999998765
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.9e-10 Score=114.41 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCCcc-c-------ccccccCCCCCCEEeCCCCcCc---------ccCCcccCCCCCCCEEEccCCcCCc
Q 040540 51 QRVTALNLSDMGLGG-T-------IPLHFGNLSFLVSLDISENNFH---------GHLPKELGQLRRLRVMSLAYNKLSG 113 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~-~-------~~~~~~~l~~L~~L~Ls~N~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~ 113 (669)
.+|+.|.+......| . +..+...+++|+.|.+..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467788877655442 1 2334567788999988765321 123344556677777777776311
Q ss_pred cCCccccCCcccccccccccCccccCCcccC--CCCCCCeeecc
Q 040540 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLF--NLSRLEMLRAE 155 (669)
Q Consensus 114 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~ 155 (669)
.++. +. +++|+.|+|..+.++......+. .+++|+.|+++
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 2333 32 66777777776665533222232 56666666654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-06 Score=89.69 Aligned_cols=316 Identities=12% Similarity=0.136 Sum_probs=163.7
Q ss_pred ccccCCC-CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCc---CCccCCccccCCcccccccccccCccccCCcccC
Q 040540 69 LHFGNLS-FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK---LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF 144 (669)
Q Consensus 69 ~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 144 (669)
.+|.+.. .|+++.+..+ ++.+-..+|.++.+|+.+.+..|. +...-...|.+..+|+.+.+..+ ++..-...|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3566663 5888888754 666667789999999999988764 44333567888888888877654 5545556778
Q ss_pred CCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 040540 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRIL 224 (669)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 224 (669)
.+.+|+.+.+..+ +...-...|....+|+.+.+..+ +...-...|.. .+|+.+.+..+. +......+.+..++...
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhcccccee
Confidence 8888888887643 33344556777888888877644 33333334433 567777765433 22334455566666666
Q ss_pred EcccCCCccccchhhhc-------------cCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 225 TLESNQLSGRLPSTIGH-------------SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 225 ~l~~n~l~~~~p~~~~~-------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
....+... .+...+.. ....+..+.+. +.+...-...|..+..|+.+.+..+... .-...|.+.
T Consensus 211 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c 287 (394)
T 4gt6_A 211 TSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNC 287 (394)
T ss_dssp EECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTC
T ss_pred cccccccc-cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccc
Confidence 55444322 11111110 00111122221 1111222334455555555555433221 223344455
Q ss_pred CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCcc
Q 040540 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTS 371 (669)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~ 371 (669)
++|+.+.+. +.++..+. ..+.+|.+|+.+.+..+ ++..-..+
T Consensus 288 ~~L~~i~l~-~~i~~I~~--------~aF~~c~~L~~i~lp~~-----------------------------v~~I~~~a 329 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPE--------SVFAGCISLKSIDIPEG-----------------------------ITQILDDA 329 (394)
T ss_dssp TTCCEEECC-TTCCEECT--------TTTTTCTTCCEEECCTT-----------------------------CCEECTTT
T ss_pred cccccccCC-CcccccCc--------eeecCCCCcCEEEeCCc-----------------------------ccEehHhH
Confidence 555555443 22222211 12344444444444221 11122234
Q ss_pred ccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCc
Q 040540 372 IGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNK 435 (669)
Q Consensus 372 ~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~ 435 (669)
|..+.+|+.+.++.+ ++..-...|.++.+|+.+++.++.... ..+....+|+.+.+..|.
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 556666777776543 444445667777777777777665432 345555666666655443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.1e-09 Score=108.15 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=70.2
Q ss_pred CCCCCEEEcccCCCcccCCcccc--CCCCCCEEEccC--CCCCCC-----CCccc--cCCCCCcEEEcccCCCccccchh
Q 040540 170 LRKLVNLGLWSCNLQGQIPTEIG--SLQNLKNLDLAD--NKLSGL-----IPPTI--FNISTMRILTLESNQLSGRLPST 238 (669)
Q Consensus 170 L~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~--N~l~~~-----~p~~~--~~l~~L~~L~l~~n~l~~~~p~~ 238 (669)
+.+|++|++..|.+.......++ .+++|++|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45566666655554432222222 456666666542 111111 00111 23567777777777765433333
Q ss_pred hhc--cCCCCCeeecccCccccc----CCccccCCCCCCEEeCCCCCccccCccccCC-CCCCCEEEccCCc
Q 040540 239 IGH--SLRNIEYLALSTNNLIGK----IPNSITNATKLIGLDLGFNSFSGHIPNTFGN-LRHLSVLNVMMNN 303 (669)
Q Consensus 239 ~~~--~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~L~l~~N~ 303 (669)
++. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+.. + ...++++.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 331 366788888888877653 2333345678888888888776433222221 1 3457777766
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-09 Score=106.48 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=41.5
Q ss_pred CCcccccccccccCccc--cCCcccCCCCCCCeeecccccccccCCcccCCCC--CCCEEEcccCCCcccCCc-------
Q 040540 121 VLSKLRILRLDYNNFTG--PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLR--KLVNLGLWSCNLQGQIPT------- 189 (669)
Q Consensus 121 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~--~L~~L~l~~n~l~~~~p~------- 189 (669)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34445555555555544 2233344455555555555554433 1222222 677777777777665542
Q ss_pred cccCCCCCCEEE
Q 040540 190 EIGSLQNLKNLD 201 (669)
Q Consensus 190 ~~~~l~~L~~L~ 201 (669)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677787775
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.54 E-value=5e-06 Score=86.88 Aligned_cols=306 Identities=10% Similarity=0.085 Sum_probs=165.1
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCc---CcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENN---FHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
++.+.+.. +++.+-..+|.+.++|+.+.+..|. ++..-..+|..+.+|+.+.+..+ +...-...|.+..+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 56666653 3554555679999999999998763 65555677888999998888655 3434456788899999999
Q ss_pred ccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 130 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+..+ ++..-...|..+.+|+.+.+..+ +...-..+|.. .+|+.+.+..+-. ..-...|....++.......+....
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceeccccccccc
Confidence 8654 44455567888899999888654 33233344443 5688777754432 2444556666777776655443321
Q ss_pred CCCcccc--------------CCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeC
Q 040540 210 LIPPTIF--------------NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDL 275 (669)
Q Consensus 210 ~~p~~~~--------------~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 275 (669)
. ...+. ....+..+.+..+ +. .+....+.....|+.+.+..+. .......|.++..|+.+.+
T Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l 295 (394)
T 4gt6_A 220 I-DNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEF 295 (394)
T ss_dssp S-SSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEEC
T ss_pred c-cceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEeccccc-ceecCcccccccccccccC
Confidence 1 11100 1112222222211 11 1222333345666666665432 2233455666677777776
Q ss_pred CCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccc
Q 040540 276 GFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIY 355 (669)
Q Consensus 276 s~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~ 355 (669)
.. .+...-..+|.++.+|+.+.+..+ ++.... ..+.+|.+|+.+.+..+ +..+.... +....+|.
T Consensus 296 ~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~--------~aF~~C~~L~~i~ip~s-v~~I~~~a----F~~C~~L~ 360 (394)
T 4gt6_A 296 SS-RITELPESVFAGCISLKSIDIPEG-ITQILD--------DAFAGCEQLERIAIPSS-VTKIPESA----FSNCTALN 360 (394)
T ss_dssp CT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT--------TTTTTCTTCCEEEECTT-CCBCCGGG----GTTCTTCC
T ss_pred CC-cccccCceeecCCCCcCEEEeCCc-ccEehH--------hHhhCCCCCCEEEECcc-cCEEhHhH----hhCCCCCC
Confidence 53 333334456666777777766432 332221 23556677777766543 33222222 22345566
Q ss_pred eEeecCcccCCCCCccccccCCCcEEecCCC
Q 040540 356 AFELGFNDLNGTIPTSIGTLQQLQGFYVPEN 386 (669)
Q Consensus 356 ~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n 386 (669)
.+++..+.... ..+.....|+.+.++.+
T Consensus 361 ~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 361 NIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEESSCHHHH---HTCBCCCCC--------
T ss_pred EEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 66665443221 22334445555555444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5e-08 Score=94.80 Aligned_cols=80 Identities=24% Similarity=0.291 Sum_probs=48.1
Q ss_pred CCCCCCCEEEccCCcCCc--cCCccccCCcccccccccccCccccCCcccCCCC--CCCeeecccccccccCCc------
Q 040540 96 GQLRRLRVMSLAYNKLSG--SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLS--RLEMLRAEFNIIGGTIPS------ 165 (669)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p~------ 165 (669)
.++++|+.|+|++|++++ .+|..+..+++|++|+|++|+|++. ..+..+. +|++|++++|.+.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345666666666666665 3445556666667777776666643 2233333 677777777776665542
Q ss_pred -ccCCCCCCCEEE
Q 040540 166 -RIGNLRKLVNLG 177 (669)
Q Consensus 166 -~~~~L~~L~~L~ 177 (669)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 255667777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=4.1e-08 Score=90.81 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=37.3
Q ss_pred ccccCCCCCCEEeCCCC-cCccc----CCcccCCCCCCCEEEccCCcCCcc----CCccccCCcccccccccccCcc
Q 040540 69 LHFGNLSFLVSLDISEN-NFHGH----LPKELGQLRRLRVMSLAYNKLSGS----FPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 69 ~~~~~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
..+...+.|++|+|++| .+... +...+...+.|++|+|++|.+... +.+.+...++|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34555666677777766 65432 233345556666666666666421 2233344455666666666654
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=7.5e-08 Score=95.56 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=75.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++ | +++++.+. .+..++||||+++|+|.+ +.. . +...++.++++|+.|||. .
T Consensus 149 ~~~~~E~~~l~~l~--~-~~v~~~~~-~~~~~lvmE~~~g~~L~~-l~~-----~--~~~~i~~qi~~~l~~lH~----~ 212 (282)
T 1zar_A 149 RSARNEFRALQKLQ--G-LAVPKVYA-WEGNAVLMELIDAKELYR-VRV-----E--NPDEVLDMILEEVAKFYH----R 212 (282)
T ss_dssp HHHHHHHHHHHHTT--T-SSSCCEEE-EETTEEEEECCCCEEGGG-CCC-----S--CHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcc--C-CCcCeEEe-ccceEEEEEecCCCcHHH-cch-----h--hHHHHHHHHHHHHHHHHH----C
Confidence 34668999999888 4 66666543 456699999999999998 532 1 234699999999999994 4
Q ss_pred CeeecCCCCccccc-----------ccccccccCccccccC----------CCcCccccchhh
Q 040540 527 PIIHCEGEDSVTQT-----------TTMATIGYMAPEYGSE----------GIVSAKCDVYSY 568 (669)
Q Consensus 527 ~i~h~d~~~~~~~~-----------~~~gt~~y~aPE~~~~----------~~~~~~~Dv~s~ 568 (669)
+|+|||+|+..... ....+..|+|||++.+ .+|+.++|+|.+
T Consensus 213 giiHrDlkp~NILl~~~~vkl~DFG~a~~~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~~ 275 (282)
T 1zar_A 213 GIVHGDLSQYNVLVSEEGIWIIDFPQSVEVGEEGWREILERDVRNIITYFSRTYRTEKDINSA 275 (282)
T ss_dssp TEECSCCSTTSEEEETTEEEECCCTTCEETTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred CCEeCCCCHHHEEEECCcEEEEECCCCeECCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Confidence 89999999763211 1124667899998753 345566666643
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.2e-07 Score=85.87 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=69.2
Q ss_pred CcccCCCCCCCEEEccCC-cCCc----cCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcc
Q 040540 92 PKELGQLRRLRVMSLAYN-KLSG----SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR 166 (669)
Q Consensus 92 p~~l~~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 166 (669)
...+...+.|++|+|++| .+.. .+...+...++|++|+|++|.+...-.. .+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~--------------------~l~~~ 88 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF--------------------ALAEM 88 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH--------------------HHHHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH--------------------HHHHH
Confidence 344566778888888887 7653 1234445556677777777766521110 11222
Q ss_pred cCCCCCCCEEEcccCCCccc----CCccccCCCCCCEEEc--cCCCCCCC----CCccccCCCCCcEEEcccCCCc
Q 040540 167 IGNLRKLVNLGLWSCNLQGQ----IPTEIGSLQNLKNLDL--ADNKLSGL----IPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 167 ~~~L~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--~~N~l~~~----~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
+...++|++|+|++|.+... +...+...++|++|+| ++|.++.. +...+...++|++|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33334555566666655432 3344555566777777 66776643 2234445577888888888764
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00018 Score=74.54 Aligned_cols=121 Identities=8% Similarity=0.004 Sum_probs=66.0
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.+.+. .+++.+-..+|.+..+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +...-...|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 45666664 3455444567888889999988754 665556667776 5777776543 33222334444 467777776
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEccc
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWS 180 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~ 180 (669)
.+ ++..-...|.+ .+|+.+.+..+ +...-...+....+++...+..
T Consensus 122 ~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 122 GA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp TT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred Cc-ccccccccccc-ceeeeeeccce-eeccccchhccccccccccccc
Confidence 54 22222222333 24544444322 2223334455566666655543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0008 Score=69.52 Aligned_cols=127 Identities=6% Similarity=-0.075 Sum_probs=68.6
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLE 150 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 150 (669)
+....+|+.+.+.. .++.+...+|.++.+|+.++|..+ +...-...|.+. +|+.+.+..+ ++..-...|. ..+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~-~~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ-GTDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT-TCCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceec-cCCcc
Confidence 55667888888875 466566677999999999999754 543444566665 5666665433 4422223333 34677
Q ss_pred eeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCC
Q 040540 151 MLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADN 205 (669)
Q Consensus 151 ~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N 205 (669)
.+.+..+. ...-...|.+. +|+...+.. .++..-...|....+++...+..+
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTT
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccc
Confidence 77665432 11122223322 344443332 222233344555555665555443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.53 E-value=2.1e-05 Score=70.61 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=32.4
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCc-CCccCCccccCC----cccccccccccC-cc
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK-LSGSFPSWIGVL----SKLRILRLDYNN-FT 136 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~ 136 (669)
.|++||++++.++..--..+..+++|+.|+|++|. ++..--..+..+ ++|++|+|++|. +|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 46666666666554444445566666666666664 432222223333 246666666653 44
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.32 E-value=5.6e-05 Score=67.86 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=14.7
Q ss_pred CCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 100 RLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 100 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+|+.||++++.++..--..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555544322222334444444444443
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00015 Score=70.53 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=55.5
Q ss_pred cCchhhhhhccccccccc--eeccccccccccceeeccCCC-C----ChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLI--KIISSCSNPDFKALVLEFMPN-G----SLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv--~l~~~~~~~~~~~lv~ey~~~-g----~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|+..+..+.|+++. ..+. ....++||||+.+ | +|.++... .++.....++.++++|+.|||
T Consensus 116 ~~~~E~~~l~~l~~~~i~~p~~~~----~~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH 187 (258)
T 1zth_A 116 WTEKEFRNLERAKEAGVSVPQPYT----YMKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLY 187 (258)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCEEE----EETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEE----cCCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHH
Confidence 456788889888887642 2222 2456899999942 4 67666532 223456789999999999999
Q ss_pred cCCCCCCeeecCCCCcc
Q 040540 521 HGHSSAPIIHCEGEDSV 537 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~ 537 (669)
.. .+|+|||+|+..
T Consensus 188 ~~---~givHrDlkp~N 201 (258)
T 1zth_A 188 QE---AELVHADLSEYN 201 (258)
T ss_dssp HT---SCEECSSCSTTS
T ss_pred HH---CCEEeCCCCHHH
Confidence 32 379999999764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0034 Score=53.53 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=36.0
Q ss_pred EEEcCCCCCc-ccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCC
Q 040540 55 ALNLSDMGLG-GTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112 (669)
Q Consensus 55 ~L~ls~~~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 112 (669)
.++.++++++ ..+|..+. .+|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777775 34553322 35777777777777655666677777777777777653
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0089 Score=50.87 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=47.2
Q ss_pred CEEeCCCCcCc-ccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCcc
Q 040540 78 VSLDISENNFH-GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 78 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
.+++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889999886 35665443 46999999999999777788999999999999999886
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0011 Score=60.63 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=32.8
Q ss_pred cCCCCCCEEeCCCC-cCccc----CCcccCCCCCCCEEEccCCcCCc----cCCccccCCcccccccccccCcc
Q 040540 72 GNLSFLVSLDISEN-NFHGH----LPKELGQLRRLRVMSLAYNKLSG----SFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
.+-+.|++|+|++| .+... +-..+..-+.|+.|+|++|++.. .+.+.+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666654 44321 22334455566666666666542 12233334455666666666554
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0021 Score=65.64 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=39.3
Q ss_pred cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc
Q 040540 477 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV 537 (669)
Q Consensus 477 ~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~ 537 (669)
.+|||||++++++.++... + ....++.+++.++.|+|. .+|||||+|+..
T Consensus 186 ~~LVME~i~G~~L~~l~~~-----~--~~~~l~~qll~~l~~lH~----~gIVHrDLKp~N 235 (397)
T 4gyi_A 186 HTIVMSLVDALPMRQVSSV-----P--DPASLYADLIALILRLAK----HGLIHGDFNEFN 235 (397)
T ss_dssp TEEEEECCSCEEGGGCCCC-----S--CHHHHHHHHHHHHHHHHH----TTEECSCCSTTS
T ss_pred ceEEEEecCCccHhhhccc-----H--HHHHHHHHHHHHHHHHHH----CCCcCCCCCHHH
Confidence 3699999999888766432 1 234678999999999995 479999999764
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0014 Score=59.91 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCC-CCccc----ccccccCCCCCCEEeCCCCcCccc----CCcccCCCCCCCEEEccCCcCCcc----CC
Q 040540 50 HQRVTALNLSDM-GLGGT----IPLHFGNLSFLVSLDISENNFHGH----LPKELGQLRRLRVMSLAYNKLSGS----FP 116 (669)
Q Consensus 50 ~~~v~~L~ls~~-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p 116 (669)
...++.|+|+++ ++... +...+..-+.|+.|+|++|.+... +...+..-+.|+.|+|++|.|... +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 357899999985 77532 345577778999999999999743 333455678899999999999742 23
Q ss_pred ccccCCccccccccccc
Q 040540 117 SWIGVLSKLRILRLDYN 133 (669)
Q Consensus 117 ~~~~~l~~L~~L~L~~n 133 (669)
+.+..-+.|++|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 44555567888888765
|
| >2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.14 Score=47.09 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=56.5
Q ss_pred CCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc-CCCCC-------CeeecCCCCcccccc-cccccccCccccccC
Q 040540 486 NGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH-GHSSA-------PIIHCEGEDSVTQTT-TMATIGYMAPEYGSE 556 (669)
Q Consensus 486 ~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~-------~i~h~d~~~~~~~~~-~~gt~~y~aPE~~~~ 556 (669)
+-+|.+.|...+.++.+.+...+..|.++++.-.-. ..... -.+|+|..-...... ......+.+||...
T Consensus 32 ~vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~~~s~~~~~~~~~pe~~~- 110 (229)
T 2yle_A 32 ALSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAPAADDAGEPPPVAGKLGY- 110 (229)
T ss_dssp EEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECCC------------CCSS-
T ss_pred cccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceecccccccccccCCCChhhcc-
Confidence 458999999888999999999999999988866511 00001 123444332211111 12234466888653
Q ss_pred CCcCccccchhhHHHHHHHHhCCCC
Q 040540 557 GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
...+.+.=|||+|+++|.-+--..|
T Consensus 111 ~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 111 SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 3356889999999999998875554
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=87.39 E-value=0.19 Score=48.27 Aligned_cols=68 Identities=6% Similarity=0.009 Sum_probs=50.2
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|...+..+. +..+.++++++......++||||++|.++.+.+.. ......++.++++++..||.
T Consensus 55 ~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~ 123 (263)
T 3tm0_A 55 DVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHS 123 (263)
T ss_dssp CHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhC
Confidence 4667888887774 56667788877777778999999999999876421 11234677888888888886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 669 | ||||
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 4e-36 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 1e-30 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 9e-29 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 7e-28 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 1e-27 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 1e-27 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 9e-27 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 1e-26 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-26 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-09 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 4e-26 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 6e-26 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 8e-26 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 8e-26 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 3e-25 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 4e-25 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 4e-25 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 8e-25 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 1e-24 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 4e-24 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 5e-24 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 8e-24 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 1e-23 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 5e-23 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 8e-23 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 1e-22 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 1e-22 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 2e-22 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 3e-22 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 3e-22 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 4e-22 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 8e-22 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 8e-22 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 8e-22 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 2e-20 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-20 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-15 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-10 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 3e-20 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 5e-20 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 6e-20 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-19 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-18 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-16 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 2e-16 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 2e-16 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 9e-16 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 1e-15 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-15 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-15 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-08 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 3e-15 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 1e-14 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 1e-14 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 2e-14 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 2e-14 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 2e-14 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 3e-14 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 3e-14 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 4e-14 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 6e-13 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 1e-12 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 2e-11 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 3e-11 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 9e-11 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 4e-10 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 1e-09 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 1e-09 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 2e-09 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 1e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 7e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.003 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.003 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 1e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-04 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 4e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 5e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.002 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.002 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.003 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.002 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.004 |
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (340), Expect = 4e-36
Identities = 47/254 (18%), Positives = 92/254 (36%), Gaps = 49/254 (19%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
L+ + P+ ++F +E VLR RH N++ + + P A+V ++ SL L+
Sbjct: 37 MLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQL-AIVTQWCEGSSLYHHLH 95
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC----------------------- 531
++++ ++I ++YL IIH
Sbjct: 96 IIETKFEMIKLIDIARQTAQGMDYLHA----KSIIHRDLKSNNIFLHEDLTVKIGDFGLA 151
Query: 532 ----EGEDSVTQTTTMATIGYMAPEY---GSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584
S +I +MAPE + S + DVY++G++L E T + P
Sbjct: 152 TVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSN 211
Query: 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644
+ + + + L LS+V +C ++ L +C + D+R
Sbjct: 212 INNRDQIIFMVGRGYLSPDLSKVRS--------------NCPKAMKRLMAECLKKKRDER 257
Query: 645 MHMTDAAAKLKKIK 658
A ++ +
Sbjct: 258 PLFPQILASIELLA 271
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (298), Expect = 1e-30
Identities = 52/243 (21%), Positives = 85/243 (34%), Gaps = 46/243 (18%)
Query: 440 IPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFK-ALVLEFMPNGSLEKWLYSHNY 498
I + ++F +E V+ +RH NL++++ +V E+M GSL +L S
Sbjct: 38 IKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGR 97
Query: 499 -FLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE----------------------GED 535
L L +DV A+EYL +H + E
Sbjct: 98 SVLGGDCLLKFSLDVCEAMEYLE----GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA 153
Query: 536 SVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRW 595
S TQ T + + APE E S K DV+S+G+LL E ++ R + + R
Sbjct: 154 SSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRV 213
Query: 596 VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655
K C ++ ++ +C R +L+
Sbjct: 214 EKGYKMDAPD------------------GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLE 255
Query: 656 KIK 658
IK
Sbjct: 256 HIK 258
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (284), Expect = 9e-29
Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 48/243 (19%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL 500
+++ F E EV+ + H L+++ C LV EFM +G L +L +
Sbjct: 39 EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLF 98
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGE 534
L + +DV + YL +IH +
Sbjct: 99 AAETLLGMCLDVCEGMAYLEEAC----VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD 154
Query: 535 DSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRR 594
+ T T + + +PE S S+K DV+S+GVL+ E F+ + E + +
Sbjct: 155 QYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS-NSEVVE 213
Query: 595 WVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654
+ + T++ + C E P+ R + +L
Sbjct: 214 DISTGFRLYKPRLASTHVY-----------------QIMNHCWKERPEDRPAFSRLLRQL 256
Query: 655 KKI 657
+I
Sbjct: 257 AEI 259
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (279), Expect = 7e-28
Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 53/248 (21%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
E +++ + + ++++I C LV+E G L K+L + +
Sbjct: 54 EEMMREAQIMHQLDNPYIVRLIGVCQAEAL-MLVMEMAGGGPLHKFLVGKREEIPVSNVA 112
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC----------------------------EGEDSVT 538
++ V ++YL +H +
Sbjct: 113 ELLHQVSMGMKYL-EEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA 168
Query: 539 QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR-KRPTDEMFTGEMSLRRWVK 597
++ + + APE + S++ DV+SYGV + E + ++P +M + +++
Sbjct: 169 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFIE 226
Query: 598 ESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+ +C + L DC + + R +++
Sbjct: 227 QGKRMECPP-----------------ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 269
Query: 658 KVKFLDDV 665
V
Sbjct: 270 YYSLASKV 277
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (275), Expect = 1e-27
Identities = 38/239 (15%), Positives = 80/239 (33%), Gaps = 40/239 (16%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL 500
S++ F E +V+ N+ H L+++ C+ ++ E+M NG L +L +
Sbjct: 38 EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRF 97
Query: 501 DILERLNIMIDVGSALEYLRH----------------GHSSAPIIHC------EGEDSVT 538
+ L + DV A+EYL + ++ +
Sbjct: 98 QTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS 157
Query: 539 QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE 598
+ + + PE S+K D++++GVL+ E ++ + E FT + +
Sbjct: 158 SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG 217
Query: 599 SLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+R + + C E D+R + + +
Sbjct: 218 LRLYRPH------------------LASEKVYTIMYSCWHEKADERPTFKILLSNILDV 258
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (276), Expect = 1e-27
Identities = 42/244 (17%), Positives = 86/244 (35%), Gaps = 50/244 (20%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF- 499
S++ +F +E +++ ++H+ L+++ + + ++ E+M NGSL +L + +
Sbjct: 47 QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI-YIITEYMENGSLVDFLKTPSGIK 105
Query: 500 LDILERLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EG 533
L I + L++ + + ++ IH E
Sbjct: 106 LTINKLLDMAAQIAEGMAFI---EER-NYIHRDLRAANILVSDTLSCKIADFGLARLIED 161
Query: 534 EDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR 593
+ + I + APE + G + K DV+S+G+LL E T R T ++
Sbjct: 162 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQ 221
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653
+ R +C + L C E P+ R +
Sbjct: 222 NLERGYRMVRPD------------------NCPEELYQLMRLCWKERPEDRPTFDYLRSV 263
Query: 654 LKKI 657
L+
Sbjct: 264 LEDF 267
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (272), Expect = 9e-27
Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 52/248 (20%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA-LVLEFMPNGSLEKWLYSHNYFLDILER 505
F +E ++++ H N++ ++ C + +VL +M +G L ++ + + + +
Sbjct: 73 SQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL 132
Query: 506 LNIMIDVGSALEYLRHGHSSAPIIHC-----------------------------EGEDS 536
+ + V + +S +H E +
Sbjct: 133 IGFGLQVAKGM----KFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV 188
Query: 537 VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWV 596
+T + +MA E + K DV+S+GVLL E TR P +++
Sbjct: 189 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAP----PYPDVNTFDIT 244
Query: 597 KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656
+ + + C + ++ L C + R ++ +++
Sbjct: 245 VY--------------LLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISA 290
Query: 657 IKVKFLDD 664
I F+ +
Sbjct: 291 IFSTFIGE 298
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (271), Expect = 1e-26
Identities = 38/221 (17%), Positives = 70/221 (31%), Gaps = 29/221 (13%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
E +VL ++ + + ++ +E M GSL++ L +
Sbjct: 49 NQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILG 107
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC------------------------EGEDSVTQTTT 542
+ I V L YL I+H + DS+ +
Sbjct: 108 KVSIAVIKGLTYL---REKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA-NSF 163
Query: 543 MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH 602
+ T YM+PE S + D++S G+ L+E + P E+ L +
Sbjct: 164 VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDA 223
Query: 603 RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643
+ R ++ ++I +L E P K
Sbjct: 224 AETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPK 264
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 107 bits (267), Expect = 3e-26
Identities = 77/302 (25%), Positives = 123/302 (40%), Gaps = 10/302 (3%)
Query: 9 TDQSSLLAFKAHAFDYRSALANNWSISYP-ICSWAGISC--GSRHQRVTALNLSDMGLGG 65
D+ +LL K + L++ + +W G+ C ++ RV L+LS + L
Sbjct: 6 QDKQALLQIKK-DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 66 --TIPLHFGNLSFLVSLDISEN-NFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVL 122
IP NL +L L I N G +P + +L +L + + + +SG+ P ++ +
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 123 SKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN 182
L L YN +G +P S+ +L L + + N I G IP G+ KL S N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 183 LQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHS 242
+ NL +DL+ N L G + + + L N L+ L
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 243 LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMN 302
N L N + G +P +T L L++ FN+ G IP GNL+ V N
Sbjct: 245 NLNGLDL--RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301
Query: 303 NL 304
Sbjct: 302 KC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 57/280 (20%), Positives = 97/280 (34%), Gaps = 18/280 (6%)
Query: 165 SRIGNLRKLVNLGLWSCNLQG--QIPTEIGSLQNLKNLDLADN-KLSGLIPPTIFNISTM 221
++ NL L NL IP+ + +L L L + L G IPP I ++ +
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 222 RILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS 281
L + ++ + L S N L G +P SI++ L+G+ N S
Sbjct: 104 HYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 282 GHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP 341
G IP+++G+ L + N T + + + +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR-------------NML 209
Query: 342 QLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLER 401
+ + + +G + L G + N + G +P L L+
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 402 LNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIP 441
L+ LN+S N L G IP +L +NK P
Sbjct: 270 LHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 68.6 bits (166), Expect = 3e-13
Identities = 50/261 (19%), Positives = 93/261 (35%), Gaps = 15/261 (5%)
Query: 192 GSLQNLKNLDLADNKLSGL--IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249
+ NLDL+ L IP ++ N+ + L + L + YL
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 250 ALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESS 309
++ N+ G IP+ ++ L+ LD +N+ SG +P + +L +L + N ++
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 310 SADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP 369
+ + + + L P L + S ++ A L +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS------- 219
Query: 370 TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLREL 429
+ N + + + LN L+L N++ G +P L L L L
Sbjct: 220 ------DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 430 HLGSNKLSSSIPSSLAFRSFD 450
++ N L IP + FD
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFD 294
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 64.0 bits (154), Expect = 1e-11
Identities = 70/316 (22%), Positives = 122/316 (38%), Gaps = 53/316 (16%)
Query: 117 SWIGV-------LSKLRILRLDYNNFTG--PIPNSLFNLSRLEM--LRAEFNIIGGTIPS 165
+W+GV ++ L L N PIP+SL NL L + N++G P+
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 166 RIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILT 225
+L L + N+ G IP + ++ L LD + N LSG +PP+I ++ + +T
Sbjct: 97 IAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 226 LESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP 285
+ N++SG +P + G + + +S N L GKIP + N
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215
Query: 286 NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIG 345
+ + + L + +NL+ L L +N + G LPQ +
Sbjct: 216 LFGSDKNTQKIHLAKNS----------LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 346 NFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNIL 405
L+ +++ + FN+L G IP +L+R ++
Sbjct: 266 Q----LKFLHSLNVSFNNLCGEIP-------------------------QGGNLQRFDVS 296
Query: 406 NLSGNKL--SGHIPPC 419
+ NK +P C
Sbjct: 297 AYANNKCLCGSPLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 56.3 bits (134), Expect = 4e-09
Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 29/232 (12%)
Query: 28 LANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNF 87
+ ++ PI + ++ + G IP + LV+LD S N
Sbjct: 83 IGGINNLVGPIPPAIAKLTQLHYL-----YITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 88 HGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN------------- 134
G LP + L L ++ N++SG+ P G SKL N
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Query: 135 ----------FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ 184
+ LF + ++G + L L L + +
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257
Query: 185 GQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLP 236
G +P + L+ L +L+++ N L G I P N+ + +N+ P
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 4e-26
Identities = 38/247 (15%), Positives = 79/247 (31%), Gaps = 44/247 (17%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
L + +E V++ + + ++++I C + LV+E G L K+L
Sbjct: 41 ILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQ 99
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGH-------SSAPIIHCEGEDSV---------- 537
+ + + + ++ V ++YL + + ++ + +
Sbjct: 100 QNRH-VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR 158
Query: 538 -------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM 590
QT + + APE + S+K DV+S+GVL+ E F+ + G
Sbjct: 159 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 218
Query: 591 SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
K + C + DL C + R
Sbjct: 219 VTAMLEKGERMGCPA------------------GCPREMYDLMNLCWTYDVENRPGFAAV 260
Query: 651 AAKLKKI 657
+L+
Sbjct: 261 ELRLRNY 267
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 6e-26
Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 49/259 (18%)
Query: 447 RSFDSECEV--LRNVRHRNLIKIISSCSNPDFKA----LVLEFMPNGSLEKWLYSHNYFL 500
RS+ E E+ +RH N++ I++ + + LV ++ +GSL +L + Y +
Sbjct: 40 RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYL--NRYTV 97
Query: 501 DILERLNIMIDVGSALEYL----RHGHSSAPIIHC------------------------- 531
+ + + + S L +L I H
Sbjct: 98 TVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157
Query: 532 ----EGEDSVTQTTTMATIGYMAPEYGSEGI------VSAKCDVYSYGVLLMETFTRKRP 581
+ + T YMAPE + I + D+Y+ G++ E R
Sbjct: 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSI 217
Query: 582 TDEMFTGEMSLRRWVKE--SLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCME 639
++ V S+ V + L + L + + +C
Sbjct: 218 GGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYA 277
Query: 640 SPDKRMHMTDAAAKLKKIK 658
+ R+ L ++
Sbjct: 278 NGAARLTALRIKKTLSQLS 296
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 105 bits (264), Expect = 8e-26
Identities = 43/249 (17%), Positives = 86/249 (34%), Gaps = 44/249 (17%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
K S + R F SE ++ H N+I + + ++ EFM NGSL+ +L
Sbjct: 60 KTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLR 119
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRH--------------------------GHSSAPI 528
++ +++ + ++ + + ++YL G S
Sbjct: 120 QNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE 179
Query: 529 IHCEGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 588
+ I + APE ++ DV+SYG+++ E +
Sbjct: 180 DDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYW---- 235
Query: 589 EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648
+M+ + + N + ++ MDC ++ L LDC + + R
Sbjct: 236 DMTNQDVI--------------NAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFG 281
Query: 649 DAAAKLKKI 657
L K+
Sbjct: 282 QIVNTLDKM 290
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (262), Expect = 8e-26
Identities = 39/247 (15%), Positives = 74/247 (29%), Gaps = 50/247 (20%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKAL--VLEFMPNGSLEKW 492
+L + + SE +LR ++H N+++ + L V+E+ G L
Sbjct: 36 ELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASV 95
Query: 493 LYSH---NYFLDILERLNIMIDVGSALEYL-RHGHSSAPIIHCE---------------- 532
+ +LD L +M + AL+ R ++H +
Sbjct: 96 ITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKL 155
Query: 533 ---------GEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583
D+ + T YM+PE + + K D++S G LL E P
Sbjct: 156 GDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFT 215
Query: 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643
+ L ++E R+ L ++
Sbjct: 216 AF--SQKELAGKIREGKFRRIPYRYSDELN-----------------EIITRMLNLKDYH 256
Query: 644 RMHMTDA 650
R + +
Sbjct: 257 RPSVEEI 263
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (258), Expect = 3e-25
Identities = 49/242 (20%), Positives = 70/242 (28%), Gaps = 50/242 (20%)
Query: 445 AFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILE 504
A F E + ++ HRNLI++ P K +V E P GSL L H +
Sbjct: 54 AMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGT 112
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHC----------------------------EGEDS 536
+ V + YL S IH +
Sbjct: 113 LSRYAVQVAEGMGYL---ESK-RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY 168
Query: 537 VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWV 596
V Q + APE S D + +GV L E FT + G L +
Sbjct: 169 VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKID 228
Query: 597 KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656
KE E DC I ++ + C P+ R L +
Sbjct: 229 KEGERLPRPE-----------------DCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLE 271
Query: 657 IK 658
+
Sbjct: 272 AQ 273
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (257), Expect = 4e-25
Identities = 45/244 (18%), Positives = 83/244 (34%), Gaps = 49/244 (20%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSC----SNPDFKALVLEFMPNGSLE 490
+L + + F E E+L+ ++H N+++ S LV E M +G+L+
Sbjct: 41 ELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLK 100
Query: 491 KWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIH-------------------- 530
+L + I + + L++L H + PIIH
Sbjct: 101 TYLKRFKV-MKIKVLRSWCRQILKGLQFL-HTRTP-PIIHRDLKCDNIFITGPTGSVKIG 157
Query: 531 ----CEGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMF 586
+ + + T +MAPE E DVY++G+ ++E T + P E
Sbjct: 158 DLGLATLKRASFAKAVIGTPEFMAPEMYEEK-YDESVDVYAFGMCMLEMATSEYPYSECQ 216
Query: 587 TGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646
RR P +V + ++ C ++ D+R
Sbjct: 217 NAAQIYRRVTSGVKPASFDKVAIPEVK-----------------EIIEGCIRQNKDERYS 259
Query: 647 MTDA 650
+ D
Sbjct: 260 IKDL 263
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (257), Expect = 4e-25
Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
F E ++ H N+I++ S ++ E+M NG+L+K+L + +L+ +
Sbjct: 54 VDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLV 113
Query: 507 NIMIDVGSALEY-----LRHG-------------------HSSAPIIHCEGEDSVTQTTT 542
++ + + ++Y H + ++ + E + T +
Sbjct: 114 GMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGG 173
Query: 543 MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH 602
I + APE S ++ DV+S+G+++ E T E+S +K
Sbjct: 174 KIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGER----PYWELSNHEVMK----- 224
Query: 603 RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
+ + MDC +I L + C + +R D + L K+
Sbjct: 225 ---------AINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 270
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (257), Expect = 8e-25
Identities = 50/263 (19%), Positives = 84/263 (31%), Gaps = 62/263 (23%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL 493
K S R F E EVL + H N+I ++ +C + + L +E+ P+G+L +L
Sbjct: 43 KRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFL 102
Query: 494 YSHNYF---------------LDILERLNIMIDVGSALEYLRHGHSSAPIIHC------- 531
L + L+ DV ++YL IH
Sbjct: 103 RKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS----QKQFIHRDLAARNI 158
Query: 532 -----------------EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLME 574
E V +T + +MA E + + + DV+SYGVLL E
Sbjct: 159 LVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWE 218
Query: 575 TFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLAL 634
+ M+ + + + ++C + DL
Sbjct: 219 IVSLGGTPYC----GMTCAELYE--------------KLPQGYRLEKPLNCDDEVYDLMR 260
Query: 635 DCCMESPDKRMHMTDAAAKLKKI 657
C E P +R L ++
Sbjct: 261 QCWREKPYERPSFAQILVSLNRM 283
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (256), Expect = 1e-24
Identities = 41/256 (16%), Positives = 76/256 (29%), Gaps = 66/256 (25%)
Query: 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH--------- 496
+ SE +VL + H N++ ++ +C+ ++ E+ G L +L
Sbjct: 71 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKT 130
Query: 497 --------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC----------------- 531
LD+ + L+ V + +L S IH
Sbjct: 131 SPAIMEDDELALDLEDLLSFSYQVAKGMAFL---AS-KNCIHRDLAARNILLTHGRITKI 186
Query: 532 ----------EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
+ V + + +MAPE + + + DV+SYG+ L E F+
Sbjct: 187 CDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSS 246
Query: 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641
+ + +KE E + D+ C P
Sbjct: 247 PYPGMPVDSKFYKMIKEGFRMLSPE-----------------HAPAEMYDIMKTCWDADP 289
Query: 642 DKRMHMTDAAAKLKKI 657
KR ++K
Sbjct: 290 LKRPTFKQIVQLIEKQ 305
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 101 bits (252), Expect = 4e-24
Identities = 44/237 (18%), Positives = 68/237 (28%), Gaps = 47/237 (19%)
Query: 438 SSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN 497
S S+ ++ E L+ +RH N I+ LV+E+ + + H
Sbjct: 51 SGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEV-HK 109
Query: 498 YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE---------------------GEDS 536
L +E + L YL H H+ +IH +
Sbjct: 110 KPLQEVEIAAVTHGALQGLAYL-HSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIM 165
Query: 537 VTQTTTMATIGYMAPEY---GSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR 593
+ + T +MAPE EG K DV+S G+ +E RK P M L
Sbjct: 166 APANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA-LY 224
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
+ P S + C + P R
Sbjct: 225 HIAQNESPALQSGHWSEYFR-----------------NFVDSCLQKIPQDRPTSEVL 264
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (249), Expect = 5e-24
Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 50/244 (20%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL 500
P +++ +F E +V++ +RH L+++ + S +V E+M GSL +L
Sbjct: 51 PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKY 109
Query: 501 DIL-ERLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EG 533
L + +++ + S + Y+ + +H E
Sbjct: 110 LRLPQLVDMAAQIASGMAYVERMN----YVHRDLRAANILVGENLVCKVADFGLARLIED 165
Query: 534 EDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR 593
+ + I + APE G + K DV+S+G+LL E T+ R +
Sbjct: 166 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-NREVL 224
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653
V+ +C S+ DL C + P++R A
Sbjct: 225 DQVERGYRMPCPP-----------------ECPESLHDLMCQCWRKEPEERPTFEYLQAF 267
Query: 654 LKKI 657
L+
Sbjct: 268 LEDY 271
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (249), Expect = 8e-24
Identities = 37/256 (14%), Positives = 85/256 (33%), Gaps = 58/256 (22%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF------- 499
F +E V++ ++++++ S +++E M G L+ +L S
Sbjct: 68 IEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVL 127
Query: 500 --LDILERLNIMIDVGSALEYLRHGHSSAPIIHC-------------------------- 531
+ + + + ++ + YL + +H
Sbjct: 128 APPSLSKMIQMAGEIADGMAYLN----ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDI 183
Query: 532 -EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM 590
E + + + +M+PE +G+ + DV+S+GV+L E T + + E
Sbjct: 184 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 243
Query: 591 SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
LR ++ L + D + +L C +P R +
Sbjct: 244 VLRFVMEGGLLDKPDNCPD------------------MLFELMRMCWQYNPKMRPSFLEI 285
Query: 651 AAKLKKIKVKFLDDVA 666
+ +K+ +V+
Sbjct: 286 ISSIKEEMEPGFREVS 301
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.4 bits (247), Expect = 1e-23
Identities = 43/244 (17%), Positives = 79/244 (32%), Gaps = 49/244 (20%)
Query: 441 PSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF- 499
++ F E V++ ++H NL++++ C+ ++ EFM G+L +L N
Sbjct: 52 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQE 111
Query: 500 LDILERLNIMIDVGSALEYLRHGHSSAPIIHC--------------------------EG 533
+ + L + + SA+EYL IH G
Sbjct: 112 VSAVVLLYMATQISSAMEYL----EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 167
Query: 534 EDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR 593
+ I + APE + S K DV+++GVLL E T +
Sbjct: 168 DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID-LSQVY 226
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653
+++ E C + +L C +P R +
Sbjct: 227 ELLEKDYRMERPE-----------------GCPEKVYELMRACWQWNPSDRPSFAEIHQA 269
Query: 654 LKKI 657
+ +
Sbjct: 270 FETM 273
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.1 bits (241), Expect = 5e-23
Identities = 41/249 (16%), Positives = 73/249 (29%), Gaps = 49/249 (19%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
K + S F E +R H +++K+I + + +++E G L +L
Sbjct: 41 KTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFLQ 99
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC----------------------- 531
Y LD+ + + +AL YL S +H
Sbjct: 100 VRKYSLDLASLILYAYQLSTALAYL----ESKRFVHRDIAARNVLVSSNDCVKLGDFGLS 155
Query: 532 ---EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 588
E + I +MAPE + ++ DV+ +GV + E +
Sbjct: 156 RYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN 215
Query: 589 EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648
+ R ++ L C P +R T
Sbjct: 216 NDVIGRIENGERLPMPPNCPP------------------TLYSLMTKCWAYDPSRRPRFT 257
Query: 649 DAAAKLKKI 657
+ A+L I
Sbjct: 258 ELKAQLSTI 266
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.6 bits (242), Expect = 8e-23
Identities = 38/251 (15%), Positives = 75/251 (29%), Gaps = 50/251 (19%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
K S A + E V+ +V + ++ +++ C + L+ + MP G L ++
Sbjct: 44 KELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVR 102
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC----------------------- 531
H + LN + + + YL ++H
Sbjct: 103 EHKDNIGSQYLLNWCVQIAKGMNYLED----RRLVHRDLAARNVLVKTPQHVKITDFGLA 158
Query: 532 ----EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFT 587
E I +MA E I + + DV+SYGV + E T +
Sbjct: 159 KLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 218
Query: 588 GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647
++ + + C + + + + C M D R
Sbjct: 219 ASEISS------------------ILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKF 260
Query: 648 TDAAAKLKKIK 658
+ + K+
Sbjct: 261 RELIIEFSKMA 271
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 96.8 bits (240), Expect = 1e-22
Identities = 40/257 (15%), Positives = 75/257 (29%), Gaps = 64/257 (24%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF------- 499
F E ++ + N++K++ C+ L+ E+M G L ++L S +
Sbjct: 61 ADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSH 120
Query: 500 ----------------LDILERLNIMIDVGSALEYLR-----HGHSSAPIIHC------- 531
L E+L I V + + YL H +
Sbjct: 121 SDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVK 180
Query: 532 -----------EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580
+ I +M PE + + DV++YGV+L E F+
Sbjct: 181 IADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGL 240
Query: 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMES 640
E + ++ +C L + +L C +
Sbjct: 241 QPYYGMAHEEVIYYVRDGNILACPE------------------NCPLELYNLMRLCWSKL 282
Query: 641 PDKRMHMTDAAAKLKKI 657
P R L+++
Sbjct: 283 PADRPSFCSIHRILQRM 299
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.2 bits (241), Expect = 1e-22
Identities = 40/259 (15%), Positives = 74/259 (28%), Gaps = 71/259 (27%)
Query: 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-------- 497
+ SE +++ + H N++ ++ +C+ L+ E+ G L +L S
Sbjct: 85 EALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEI 144
Query: 498 --------------YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC------------ 531
L + L V +E+L +H
Sbjct: 145 EYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFL-E---FKSCVHRDLAARNVLVTHG 200
Query: 532 ---------------EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576
+ V + + +MAPE EGI + K DV+SYG+LL E F
Sbjct: 201 KVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIF 260
Query: 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDC 636
+ + + + ++ I + C
Sbjct: 261 SLGVNPYPGIPVDANFYKLIQNGFKMDQPF-----------------YATEEIYIIMQSC 303
Query: 637 CMESPDKRMHMTDAAAKLK 655
KR + + L
Sbjct: 304 WAFDSRKRPSFPNLTSFLG 322
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 96.7 bits (240), Expect = 2e-22
Identities = 37/230 (16%), Positives = 71/230 (30%), Gaps = 46/230 (20%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
+ E + + +RH L+ + + + + ++ EFM G L + + + + E +
Sbjct: 68 ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAV 127
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC--------------------------EGEDSVTQT 540
M V L ++ + +H + +
Sbjct: 128 EYMRQVCKGLCHMHENN----YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVK 183
Query: 541 TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL 600
T T + APE V D++S GVL + P + E+
Sbjct: 184 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSP-------------FGGEND 230
Query: 601 PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
L V + ++ AFS D + P+ RM + A
Sbjct: 231 DETLRNVKSCDWNMDDSAFS---GISEDGKDFIRKLLLADPNTRMTIHQA 277
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.7 bits (235), Expect = 3e-22
Identities = 34/232 (14%), Positives = 66/232 (28%), Gaps = 50/232 (21%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
+ E + + + H N++K + + L LE+ G L + +
Sbjct: 48 ENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGM-PEPDAQ 106
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC---------------------------EGEDSVTQ 539
+ + + YL HG I H
Sbjct: 107 RFFHQLMAGVVYL-HGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL 162
Query: 540 TTTMATIGYMAPEY-GSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE 598
T+ Y+APE + DV+S G++L + P D+ W ++
Sbjct: 163 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK 222
Query: 599 SLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
+ +D+ + L +E+P R+ + D
Sbjct: 223 KTYLNPWKKIDSAPL-----------------ALLHKILVENPSARITIPDI 257
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.1 bits (236), Expect = 3e-22
Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 40/225 (17%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
+E V+R ++ N++ + S D +V+E++ GSL + +
Sbjct: 62 ELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEG--QIA 119
Query: 507 NIMIDVGSALEYL-----RHGHSSAPIIHCEGEDSV----------------TQTTTMAT 545
+ + ALE+L H + I + SV ++T + T
Sbjct: 120 AVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGT 179
Query: 546 IGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLS 605
+MAPE + K D++S G++ +E + P +L P
Sbjct: 180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE-NPLRALYLIATNGTPE--- 235
Query: 606 EVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
D C +KR +
Sbjct: 236 -------------LQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL 267
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.3 bits (234), Expect = 4e-22
Identities = 47/228 (20%), Positives = 81/228 (35%), Gaps = 50/228 (21%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
E E+ ++RH N++++ + L+LE+ P G++ + L + F D
Sbjct: 51 HQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF-DEQRTA 109
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC-----------EGE------------DSVTQTTTM 543
+ ++ +AL Y HS +IH GE S +TT
Sbjct: 110 TYITELANALSYC---HS-KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLC 165
Query: 544 ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR-RWVKESLPH 602
T+ Y+ PE + K D++S GVL E K P + E R V+ + P
Sbjct: 166 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPD 225
Query: 603 RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
++E DL +P +R + +
Sbjct: 226 FVTE---------------------GARDLISRLLKHNPSQRPMLREV 252
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.2 bits (233), Expect = 8e-22
Identities = 47/266 (17%), Positives = 87/266 (32%), Gaps = 65/266 (24%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL 493
K+ S + SE E+++ + +H+N+I ++ +C+ +++E+ G+L ++L
Sbjct: 51 KMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYL 110
Query: 494 YSHNYF---------------LDILERLNIMIDVGSALEYLRHGHSSAPIIHC------- 531
+ L + ++ V +EYL S IH
Sbjct: 111 QARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA----SKKCIHRDLAARNV 166
Query: 532 --------------------EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571
+ T + +MAPE + I + + DV+S+GVL
Sbjct: 167 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 226
Query: 572 LMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMD 631
L E FT L + +KE +C +
Sbjct: 227 LWEIFTLGGSPYPGVP-VEELFKLLKEGHRMDKPS-----------------NCTNELYM 268
Query: 632 LALDCCMESPDKRMHMTDAAAKLKKI 657
+ DC P +R L +I
Sbjct: 269 MMRDCWHAVPSQRPTFKQLVEDLDRI 294
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 95.1 bits (236), Expect = 8e-22
Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 38/234 (16%)
Query: 439 SIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY 498
+ P L + +E ++ + H LI + + + L+LEF+ G L + + +Y
Sbjct: 63 NTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDY 122
Query: 499 FLDILERLNIMIDVGSALEYLR-----HGHSSAPIIHCEG-----------------EDS 536
+ E +N M L+++ H I CE
Sbjct: 123 KMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD 182
Query: 537 VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWV 596
T AT + APE V D+++ GVL + P +
Sbjct: 183 EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSP-------------FA 229
Query: 597 KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
E L V + +E AFS D + + P KR+ + DA
Sbjct: 230 GEDDLETLQNVKRCDWEFDEDAFS---SVSPEAKDFIKNLLQKEPRKRLTVHDA 280
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.9 bits (233), Expect = 8e-22
Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 51/234 (21%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
+ E ++L + H N++K++ + + +++EF G+++ + L +
Sbjct: 54 EDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQ 113
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC-------------------------EGEDSVTQTT 541
+ AL YL H IIH + +
Sbjct: 114 VVCKQTLDALNYL-H---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS 169
Query: 542 TMATIGYMAPEY-----GSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWV 596
+ T +MAPE + K DV+S G+ L+E + P E+ + L +
Sbjct: 170 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRV-LLKIA 228
Query: 597 KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
K P + + D C ++ D R +
Sbjct: 229 KSEPPT----------------LAQPSRWSSNFKDFLKKCLEKNVDARWTTSQL 266
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 90.1 bits (223), Expect = 2e-20
Identities = 41/227 (18%), Positives = 74/227 (32%), Gaps = 40/227 (17%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
S ++E VL ++H N++ + + L+++ + G L + F +
Sbjct: 52 GSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKG-FYTERDAS 110
Query: 507 NIMIDVGSALEYL-------RHGHSSAPIIHCEGEDSV----------------TQTTTM 543
++ V A++YL R + + EDS +T
Sbjct: 111 RLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTAC 170
Query: 544 ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHR 603
T GY+APE ++ S D +S GV+ P + + L + ++
Sbjct: 171 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE--NDAKLFEQILKAEYEF 228
Query: 604 LSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
S D D S D + P+KR A
Sbjct: 229 DSPYWD--------------DISDSAKDFIRHLMEKDPEKRFTCEQA 261
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 91.2 bits (225), Expect = 3e-20
Identities = 73/391 (18%), Positives = 135/391 (34%), Gaps = 56/391 (14%)
Query: 73 NLSFLVSLDISENNFHGHLPK-ELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131
L+ + + + N + + +L Q+ L+ L + G + L+ L +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74
Query: 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPT-- 189
N T P L NL++L + N I P + L +
Sbjct: 75 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132
Query: 190 ----------EIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTI 239
I + L L G + ++ + L + ++
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192
Query: 240 GHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNV 299
L N+E L + N + P I T L L L N T +L +L+ L++
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248
Query: 300 MMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP----------------QL 343
N ++ L+ L+ L+ L L +N + I P
Sbjct: 249 ANNQISN----------LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298
Query: 344 IGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLN 403
+ ++L+N+ L FN+++ P + +L +LQ + N + L +L +N
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNIN 354
Query: 404 ILNLSGNKLSGHIPPCLASLTSLRELHLGSN 434
L+ N++S P LA+LT + +L L
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 76.2 bits (186), Expect = 2e-15
Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 17/229 (7%)
Query: 26 SALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISEN 85
+ L + + IS ++ + +L ++ + PL + L L ++ N
Sbjct: 172 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGN 229
Query: 86 NFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFN 145
L L L + LA N++S P + L+KL L+L N + P L
Sbjct: 230 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 283
Query: 146 LSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADN 205
L+ L L N + S I NL+ L L L+ N+ P + SL L+ L A+N
Sbjct: 284 LTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 339
Query: 206 KLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTN 254
K+S ++ N++ + L+ NQ+S P +L I L L+
Sbjct: 340 KVSD--VSSLANLTNINWLSAGHNQISDLTPL---ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 60.4 bits (145), Expect = 3e-10
Identities = 61/356 (17%), Positives = 111/356 (31%), Gaps = 60/356 (16%)
Query: 136 TGPIP-NSLFNLSRL-EMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGS 193
T P N +F + L E ++ T +L ++ L ++ +
Sbjct: 7 TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEY 64
Query: 194 LQNLKNLDLADNKLSGLIP----------------PTIFNISTMRILTLESNQLSGRLPS 237
L NL ++ ++N+L+ + P + ++
Sbjct: 65 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124
Query: 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVL 297
++N I I + + + N R
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184
Query: 298 NVMMNNLTTES--------SSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSA 349
N + + ++ +Q S ++ L NL L+L N L I A
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI------GTLA 238
Query: 350 SLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVP---------------- 393
SL N+ +L N ++ P + L +L + N + P
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296
Query: 394 ----HDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLA 445
+ +L+ L L L N +S P ++SLT L+ L +NK+S SSLA
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA 348
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 89.0 bits (220), Expect = 3e-20
Identities = 38/240 (15%), Positives = 84/240 (35%), Gaps = 46/240 (19%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKA----LVLEFMPNGSLEKWLYSHNYFLDI 502
F E + + H ++ + + +V+E++ +L +++ +
Sbjct: 52 LRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP-MTP 110
Query: 503 LERLNIMIDVGSALEYLRH----------------GHSSAPIIHC-------EGEDSVTQ 539
+ ++ D AL + ++ ++ + +SVTQ
Sbjct: 111 KRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQ 170
Query: 540 TTTMA-TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE 598
T + T Y++PE V A+ DVYS G +L E T + P ++ + ++
Sbjct: 171 TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRED 230
Query: 599 SLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-MTDAAAKLKKI 657
+P + SA +D + L ++P+ R + A L ++
Sbjct: 231 PIPPSA----------RHEGLSADLD------AVVLKALAKNPENRYQTAAEMRADLVRV 274
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.3 bits (221), Expect = 5e-20
Identities = 36/224 (16%), Positives = 78/224 (34%), Gaps = 38/224 (16%)
Query: 449 FDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNI 508
E +L RHRN++ + S + + ++ EF+ + + + + + L+ E ++
Sbjct: 48 VKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSY 107
Query: 509 MIDVGSALEYL-------RHGHSSAPIIHCEGEDSV---------------TQTTTMATI 546
+ V AL++L I ++
Sbjct: 108 VHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAP 167
Query: 547 GYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSE 606
Y APE +VS D++S G L+ + P ++ E+ +
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINP-------------FLAETNQQIIEN 214
Query: 607 VVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
+++ +E+AF + + MD ++ RM ++A
Sbjct: 215 IMNAEYTFDEEAFK---EISIEAMDFVDRLLVKERKSRMTASEA 255
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.5 bits (219), Expect = 6e-20
Identities = 38/248 (15%), Positives = 71/248 (28%), Gaps = 56/248 (22%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
E +V+ + H +K+ + + + L + NG L K++ F D
Sbjct: 53 PYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSF-DETCTR 111
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC---------------------------EGEDSVTQ 539
++ SALEYL HG IIH
Sbjct: 112 FYTAEIVSALEYL-HGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA 167
Query: 540 TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE- 598
+ + T Y++PE +E D+++ G ++ + P + ++ +K
Sbjct: 168 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLI-FQKIIKLE 226
Query: 599 -SLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657
P + DL + KR+ +
Sbjct: 227 YDFPEKFFP---------------------KARDLVEKLLVLDATKRLGCEEMEGYGPLK 265
Query: 658 KVKFLDDV 665
F + V
Sbjct: 266 AHPFFESV 273
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.4 bits (215), Expect = 2e-19
Identities = 50/298 (16%), Positives = 99/298 (33%), Gaps = 21/298 (7%)
Query: 39 CSWAGISCGSRH---------QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHG 89
C + C L+L + + F NL L +L + N
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 90 HLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRL 149
P L +L + L+ N+L L +LR+ + + N L + +
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129
Query: 150 EMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209
E+ G ++KL + + N+ IP G +L L L NK++
Sbjct: 130 ELGTNPLKSS-GIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITK 185
Query: 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATK 269
+ ++ ++ + L L N +S ++ ++ E NN + K+P + +
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL--HLNNNKLVKVPGGLADHKY 243
Query: 270 LIGLDLGFNSFSGHIPNTF------GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLT 321
+ + L N+ S N F S +++ N + + +
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.3 bits (207), Expect = 2e-18
Identities = 57/300 (19%), Positives = 101/300 (33%), Gaps = 26/300 (8%)
Query: 162 TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTM 221
+P + L L + + + +L+NL L L +NK+S + P + +
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 222 RILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS 281
L L NQL LP + +L+ + + + N + + L S
Sbjct: 82 ERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSS 139
Query: 282 GHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP 341
G F ++ LS + + N+TT +L+ L L N + +
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQG-----------LPPSLTELHLDGNKITKVDA 188
Query: 342 QLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLER 401
+ L N+ L FN ++ S+ L+ ++ N L VP L +
Sbjct: 189 ASLKG----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243
Query: 402 LNILNLSGNKLSG------HIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFDSECEV 455
+ ++ L N +S P S + L SN + FR V
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.0 bits (188), Expect = 5e-16
Identities = 50/275 (18%), Positives = 101/275 (36%), Gaps = 20/275 (7%)
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN 245
++P ++ + LDL +NK++ + N+ + L L +N++S P L
Sbjct: 24 KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVK 80
Query: 246 IEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT 305
+E L LS N L +L + N + + F L + V+ + N L
Sbjct: 81 LERLYLSKNQLKELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLK 137
Query: 306 TESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN 365
+ + + L+ R + + SL ++ L N +
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTN----------ITTIPQGLPPSLTELH---LDGNKIT 184
Query: 366 GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTS 425
S+ L L + N++ L + L L+L+ NKL +P LA
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243
Query: 426 LRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVR 460
++ ++L +N +S+ + ++++ V
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.4 bits (192), Expect = 2e-16
Identities = 46/254 (18%), Positives = 83/254 (32%), Gaps = 63/254 (24%)
Query: 447 RSFDSECEVL-RNVRHRNLIKIISSCSNPDFK-ALVLEFMPNGSLEKWLYSHNY------ 498
R+ SE ++L H N++ ++ +C+ P +++EF G+L +L S
Sbjct: 61 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYK 120
Query: 499 ---------FLDILERLNIMIDVGSALEYLRHGHSSAPIIH------------------- 530
FL + + V +E+L S I
Sbjct: 121 VAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICD 177
Query: 531 -------CEGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583
+ D V + + +MAPE + + + + DV+S+GVLL E F+
Sbjct: 178 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 237
Query: 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643
+ R +KE R + + LDC P +
Sbjct: 238 PGVKIDEEFCRRLKEGTRMRAPD-----------------YTTPEMYQTMLDCWHGEPSQ 280
Query: 644 RMHMTDAAAKLKKI 657
R ++ L +
Sbjct: 281 RPTFSELVEHLGNL 294
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (192), Expect = 2e-16
Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 37/213 (17%)
Query: 446 FRSFDSECEVL-RNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILE 504
E VL H L + + + V+E++ G L + S + F D+
Sbjct: 46 VECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKF-DLSR 104
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHCE-------------------------GEDSVTQ 539
++ L++L I++ +
Sbjct: 105 ATFYAAEIILGLQFLHSKG----IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKT 160
Query: 540 TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP-----TDEMFTGEMSLRR 594
T T Y+APE + D +S+GVLL E + P +E+F
Sbjct: 161 NTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNP 220
Query: 595 WVKESLPHRLSEVVDTNLVRE-EQAFSAKMDCL 626
+ L +++ VRE E+ + D
Sbjct: 221 FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 253
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.9 bits (186), Expect = 9e-16
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 34/185 (18%)
Query: 446 FRSFDSECEVLRNVR--HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDIL 503
E +L+ V +I+++ PD L+LE + L
Sbjct: 51 GTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEE 110
Query: 504 ERLNIMIDVGSALEYLRHGHSSAPIIHC------------------------EGEDSVTQ 539
+ V A+ + + ++H
Sbjct: 111 LARSFFWQVLEAVRHCH----NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVY 166
Query: 540 TTTMATIGYMAPEY-GSEGIVSAKCDVYSYGVLLMETFTRKRP---TDEMFTGEMSLRRW 595
T T Y PE+ V+S G+LL + P +E+ G++ R+
Sbjct: 167 TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 226
Query: 596 VKESL 600
V
Sbjct: 227 VSSEC 231
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.3 bits (187), Expect = 1e-15
Identities = 45/237 (18%), Positives = 73/237 (30%), Gaps = 49/237 (20%)
Query: 447 RSFDSECEVL-RNVRHRNLIKIISSCSNPDFKA----LVLEFMPNGSLEKWLYSH-NYFL 500
E E+ R + ++++I+ N +V+E + G L + +
Sbjct: 49 PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAF 108
Query: 501 DILERLNIMIDVGSALEYLRHGHSSAPIIHC---------------------------EG 533
E IM +G A++YL HS I H E
Sbjct: 109 TEREASEIMKSIGEAIQYL---HSIN-IAHRDVKPENLLYTSKRPNAILKLTDFGFAKET 164
Query: 534 EDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLR 593
+ TT T Y+APE CD++S GV++ P F L
Sbjct: 165 TSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPP----FYSNHGLA 220
Query: 594 RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650
R+ + N E + K L + P +RM +T+
Sbjct: 221 ISPGMKTRIRMGQYEFPNPEWSEVSEEVK--------MLIRNLLKTEPTQRMTITEF 269
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (182), Expect = 2e-15
Identities = 47/240 (19%), Positives = 76/240 (31%), Gaps = 5/240 (2%)
Query: 19 AHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLV 78
A +F L W S + + + L P F L L
Sbjct: 49 AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGP 138
+L + P L L+ + L N L L L L L N +
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168
Query: 139 IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK 198
+ L L+ L N + P +L +L+ L L++ NL + L+ L+
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228
Query: 199 NLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIG 258
L L DN + ++ S+++ LP L + L+ N+L G
Sbjct: 229 YLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQ----RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (182), Expect = 2e-15
Identities = 59/278 (21%), Positives = 91/278 (32%), Gaps = 20/278 (7%)
Query: 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173
+ P I + + + L N + S L +L N++ + L L
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 174 VNLGLWSCNLQGQI-PTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232
L L + P L L L L L L P ++ ++ L L+ N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 233 GRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292
T L N+ +L L N + + L L L N + P+ F +L
Sbjct: 143 ALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 293 HLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQ 352
L L + NNL+ +L R L L L NP A LQ
Sbjct: 202 RLMTLYLFANNLS--------ALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQ 251
Query: 353 NIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQG 390
F +++ ++P L + N+LQG
Sbjct: 252 K---FRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 4e-13
Identities = 49/285 (17%), Positives = 87/285 (30%), Gaps = 33/285 (11%)
Query: 46 CGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMS 105
C ++ + GL +P+ + + N R L ++
Sbjct: 6 CVCYNEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILW 62
Query: 106 LAYNK-------------------------LSGSFPSWIGVLSKLRILRLDYNNFTGPIP 140
L N L P+ L +L L LD P
Sbjct: 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122
Query: 141 NSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNL 200
L+ L+ L + N + +L L +L L + L +L L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182
Query: 201 DLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI 260
L N+++ + P ++ + L L +N LS LP+ LR ++YL L+ N +
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC-D 240
Query: 261 PNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT 305
+ L + +P L + + N+L
Sbjct: 241 CRARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 7e-09
Identities = 53/232 (22%), Positives = 80/232 (34%), Gaps = 16/232 (6%)
Query: 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKL 270
+P I + + + L N++S +P+ + RN+ L L +N L + T L
Sbjct: 26 VPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 271 IGLDLGFNSFSGHI-PNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNL 329
LDL N+ + P TF L L L++ Q L L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHL--------DRCGLQELGPGLFRGLAALQYL 134
Query: 330 ALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ 389
L N L + + N+ L N ++ + L L + +N +
Sbjct: 135 YLQDNALQALPDDTFRDL----GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 390 GYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIP 441
PH L RL L L N LS LA L +L+ L L N
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 5e-08
Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 13/214 (6%)
Query: 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319
+P I A++ + L N S +F R+L++L + N L ++A L
Sbjct: 26 VPVGIPAASQR--IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 320 LTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQ 379
+ + + L + P L ++ L L P L LQ
Sbjct: 84 QLDLSDNAQL-------RSVDPATFHG----LGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 380 GFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSS 439
Y+ +N LQ L L L L GN++S L SL L L N+++
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 440 IPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSN 473
P + + N + ++
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (182), Expect = 3e-15
Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 41/242 (16%)
Query: 433 SNKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKW 492
+ + S ++ + E +L+ ++H N+I + N L+LE + G L +
Sbjct: 44 KKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 103
Query: 493 LYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE-------------------- 532
L + E + + + + YL + + E
Sbjct: 104 LAEKESLTEE-EATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFG 162
Query: 533 ----GEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 588
+ T ++APE + + + D++S GV+ + P
Sbjct: 163 LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP------- 215
Query: 589 EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648
++ ++ L+ V N E++ FS + D ++ P KRM +
Sbjct: 216 ------FLGDTKQETLANVSAVNYEFEDEYFS---NTSALAKDFIRRLLVKDPKKRMTIQ 266
Query: 649 DA 650
D+
Sbjct: 267 DS 268
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (180), Expect = 1e-14
Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 46/232 (19%)
Query: 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER 505
+ ++ ++ + + PD + +L+ M G L L H F + +
Sbjct: 51 ALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE-ADM 109
Query: 506 LNIMIDVGSALEYLRHGHSSAPIIH-----------------------CEGEDSVTQTTT 542
++ LE++ H + +++ +
Sbjct: 110 RFYAAEIILGLEHM-H---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 165
Query: 543 MATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP 601
+ T GYMAPE +G+ + D +S G +L + P + T + + ++
Sbjct: 166 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA 225
Query: 602 HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653
L + L L ++R+ A+
Sbjct: 226 VELPDSFSPELR-----------------SLLEGLLQRDVNRRLGCLGRGAQ 260
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (177), Expect = 1e-14
Identities = 43/257 (16%), Positives = 79/257 (30%), Gaps = 47/257 (18%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLR---NVRHRNLIKIISSCSNPDFKA-----LVLEFMPN 486
++ S E VLR H N++++ C+ LV E +
Sbjct: 40 RVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ 99
Query: 487 GSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC--------------- 531
+ ++M + L++L HS ++H
Sbjct: 100 DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFL---HS-HRVVHRDLKPQNILVTSSGQI 155
Query: 532 ---------EGEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582
+ T+ + T+ Y APE + + D++S G + E F RK
Sbjct: 156 KLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLF 215
Query: 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLS---------IMDLA 633
++ + + + E ++ QAF +K + DL
Sbjct: 216 RGS--SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLL 273
Query: 634 LDCCMESPDKRMHMTDA 650
L C +P KR+ A
Sbjct: 274 LKCLTFNPAKRISAYSA 290
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 72.0 bits (176), Expect = 2e-14
Identities = 43/252 (17%), Positives = 77/252 (30%), Gaps = 44/252 (17%)
Query: 426 LRELHLGSNKLSSSIPSSLAFRSFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFM 484
++ + + S+ + E ++LR V H N+I++ + F LV + M
Sbjct: 33 VKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLM 92
Query: 485 PNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL-----RHGHSSAPIIHCEGEDSV-- 537
G L +L L E IM + + L H I + + ++
Sbjct: 93 KKGELFDYLTEKVT-LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKL 151
Query: 538 -------------TQTTTMATIGYMAPEY------GSEGIVSAKCDVYSYGVLLMETFTR 578
T Y+APE + + D++S GV++
Sbjct: 152 TDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG 211
Query: 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCM 638
P +M + R + S D D ++ DL +
Sbjct: 212 SPPFWHR--KQMLMLRMIMSGNYQFGSPEWD--------------DYSDTVKDLVSRFLV 255
Query: 639 ESPDKRMHMTDA 650
P KR +A
Sbjct: 256 VQPQKRYTAEEA 267
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.4 bits (177), Expect = 2e-14
Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 51/231 (22%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERL 506
+ E +L V H +I++ + + ++++++ G L +
Sbjct: 49 EHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSL-LRKSQRFPNPVAK 107
Query: 507 NIMIDVGSALEYLRHGHSSAPIIHC-----------EGEDSVT-----------QTTTMA 544
+V ALEYL S II+ G +T T
Sbjct: 108 FYAAEVCLALEYL----HSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCG 163
Query: 545 TIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE--SLPH 602
T Y+APE S + D +S+G+L+ E P + T + + + P
Sbjct: 164 TPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKT-YEKILNAELRFPP 222
Query: 603 RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653
+E + DL +R+ +
Sbjct: 223 FFNE---------------------DVKDLLSRLITRDLSQRLGNLQNGTE 252
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (176), Expect = 2e-14
Identities = 39/251 (15%), Positives = 76/251 (30%), Gaps = 39/251 (15%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
K+ + + E +L+ + H N++K++ + LV EF+ +
Sbjct: 34 KIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA 93
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE---------------------- 532
S + + + + + L + S ++H +
Sbjct: 94 SALTGIPLPLIKSYLFQLLQGLAFCH----SHRVLHRDLKPQNLLINTEGAIKLADFGLA 149
Query: 533 ---GEDSVTQTTTMATIGYMAPE-YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 588
G T T + T+ Y APE S D++S G + E TR+
Sbjct: 150 RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI 209
Query: 589 EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLS---------IMDLALDCCME 639
+ R + P + T++ + +F S L
Sbjct: 210 DQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHY 269
Query: 640 SPDKRMHMTDA 650
P+KR+ A
Sbjct: 270 DPNKRISAKAA 280
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.8 bits (175), Expect = 3e-14
Identities = 25/249 (10%), Positives = 56/249 (22%), Gaps = 43/249 (17%)
Query: 440 IPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF 499
E ++ + ++ I I C +++ + SLE +
Sbjct: 40 ECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRK 99
Query: 500 LDILERLNIMIDVGSALEYL-----RHGHSSAPIIHCEGED------------------- 535
+ L + + S +EY+ H
Sbjct: 100 FSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 159
Query: 536 -------SVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 588
T Y + S + D+ S G +LM P +
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK-- 217
Query: 589 EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648
+ R+ + ++S ++ C D + +
Sbjct: 218 AATKRQKYERISEKKMSTPIEV----------LCKGYPSEFATYLNFCRSLRFDDKPDYS 267
Query: 649 DAAAKLKKI 657
+ +
Sbjct: 268 YLRQLFRNL 276
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 71.5 bits (174), Expect = 3e-14
Identities = 37/251 (14%), Positives = 79/251 (31%), Gaps = 40/251 (15%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
K+ + E +L+ ++H N++K+ LV E + + L+K L
Sbjct: 33 KIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHL-DQDLKKLLD 91
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE---------------------- 532
L+ + + ++ + + + Y ++H +
Sbjct: 92 VCEGGLESVTAKSFLLQLLNGIAYCH----DRRVLHRDLKPQNLLINREGELKIADFGLA 147
Query: 533 ---GEDSVTQTTTMATIGYMAPE-YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 588
G T + T+ Y AP+ S D++S G + E +
Sbjct: 148 RAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEA 207
Query: 589 EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLL---------SIMDLALDCCME 639
+ +R + P+ + T L + + F+ S +DL
Sbjct: 208 DQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKL 267
Query: 640 SPDKRMHMTDA 650
P++R+ A
Sbjct: 268 DPNQRITAKQA 278
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (174), Expect = 4e-14
Identities = 42/248 (16%), Positives = 76/248 (30%), Gaps = 33/248 (13%)
Query: 434 NKLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWL 493
S R+ E ++L+ + H N+I ++ + + +LV +FM +
Sbjct: 32 KLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLE-VII 90
Query: 494 YSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP----------------------IIHC 531
++ L M+ LEYL H H +
Sbjct: 91 KDNSLVLTPSHIKAYMLMTLQGLEYL-HQHWILHRDLKPNNLLLDENGVLKLADFGLAKS 149
Query: 532 EGEDSVTQTTTMATIGYMAPE-YGSEGIVSAKCDVYSYGVLLMETFTRKRP------TDE 584
G + T + T Y APE + D+++ G +L E R D+
Sbjct: 150 FGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQ 209
Query: 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLS--IMDLALDCCMESPD 642
+ +L +E P S + ++DL + +P
Sbjct: 210 LTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPC 269
Query: 643 KRMHMTDA 650
R+ T A
Sbjct: 270 ARITATQA 277
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (166), Expect = 6e-13
Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 47/247 (19%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLY--SHNY 498
R + E +++R + H N++++ + + LVL+++P +
Sbjct: 58 RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQ 117
Query: 499 FLDILERLNIMIDVGSALEYLRHGHSSAPIIHC-------------------------EG 533
L ++ M + +L Y+ HS I H +
Sbjct: 118 TLPVIYVKLYMYQLFRSLAYI---HS-FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL 173
Query: 534 EDSVTQTTTMATIGYMAP-EYGSEGIVSAKCDVYSYGVLLMETFTRKRP------TDEMF 586
+ + + Y AP ++ DV+S G +L E + D++
Sbjct: 174 VRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233
Query: 587 TGEMSLRRWVKESLPHRLSEVVDTNLVR-EEQAFSAKMDCLLS--IMDLALDCCMESPDK 643
L +E + + + + ++ + L +P
Sbjct: 234 EIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTA 293
Query: 644 RMHMTDA 650
R+ +A
Sbjct: 294 RLTPLEA 300
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 1e-12
Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 46/246 (18%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS--HNYFLDILE 504
+ E ++L RH N+I I P + + ++ + LY L
Sbjct: 51 QRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDH 110
Query: 505 RLNIMIDVGSALEYLRHGHSSAPIIHC----------------------------EGEDS 536
+ + L+Y+ H SA ++H + + +
Sbjct: 111 ICYFLYQILRGLKYI-H---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT 166
Query: 537 VTQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRW 595
T +AT Y APE + D++S G +L E + + +
Sbjct: 167 GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHIL 226
Query: 596 VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSI-----------MDLALDCCMESPDKR 644
P + NL S + +DL +P KR
Sbjct: 227 GILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKR 286
Query: 645 MHMTDA 650
+ + A
Sbjct: 287 IEVEQA 292
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.7 bits (151), Expect = 2e-11
Identities = 31/252 (12%), Positives = 77/252 (30%), Gaps = 41/252 (16%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLY 494
++ S E +L+ ++H+N++++ + LV EF + +
Sbjct: 34 RVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDS 93
Query: 495 SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE---------------------- 532
+ + + + L + + ++H +
Sbjct: 94 CNGDLDPE-IVKSFLFQLLKGLGFCHSRN----VLHRDLKPQNLLINRNGELKLANFGLA 148
Query: 533 ---GEDSVTQTTTMATIGYMAPE-YGSEGIVSAKCDVYSYGVLLMETFTRKRP------T 582
G + + T+ Y P+ + S D++S G + E RP
Sbjct: 149 RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV 208
Query: 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD----CCM 638
D+ L E ++++ D A ++ ++ + + D
Sbjct: 209 DDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLK 268
Query: 639 ESPDKRMHMTDA 650
+P +R+ +A
Sbjct: 269 CNPVQRISAEEA 280
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 62.5 bits (151), Expect = 3e-11
Identities = 21/260 (8%), Positives = 51/260 (19%), Gaps = 47/260 (18%)
Query: 440 IPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYF 499
P E + + I + +++ + SLE L
Sbjct: 38 EPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRK 97
Query: 500 LDILERLNIMIDVGSALEYLRHGHS------------SAPIIHCEGEDSVTQ-------- 539
+ + + ++ + P V
Sbjct: 98 FSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 157
Query: 540 -------------TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMF 586
T YM+ S + D+ + G + M
Sbjct: 158 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFM----------YFL 207
Query: 587 TGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646
G + + + + + + + A + D
Sbjct: 208 RGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCA--GFPEEFYKYMHYARNLAFDATPD 265
Query: 647 MTDAAAKLKKI--KVKFLDD 664
K+ ++ +D
Sbjct: 266 YDYLQGLFSKVLERLNTTED 285
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (148), Expect = 9e-11
Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 35/250 (14%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNP----DFKALVLEFMPNGSLE 490
KLS S + + E +L++++H N+I ++ + +F + L G+
Sbjct: 50 KLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL 109
Query: 491 KWLYSHNYFLDILERLNIMIDVGSALEYL------------------RHGHSSAPIIHCE 532
+ D ++ + L+Y+
Sbjct: 110 NNIVKCQKLTDD-HVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 168
Query: 533 GEDSVTQTTTMATIGYMAPE-YGSEGIVSAKCDVYSYGVLLMETFTRKRP---TDEMFTG 588
T +AT Y APE + + D++S G ++ E T + TD +
Sbjct: 169 RHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQL 228
Query: 589 EMSLRRWVK--ESLPHRLSEVVDTNLVREEQAFSAK--MDCLLSIMDLALD----CCMES 640
++ LR L ++S N ++ + + LA+D +
Sbjct: 229 KLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLD 288
Query: 641 PDKRMHMTDA 650
DKR+ A
Sbjct: 289 SDKRITAAQA 298
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.8 bits (144), Expect = 4e-10
Identities = 41/230 (17%), Positives = 69/230 (30%), Gaps = 47/230 (20%)
Query: 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER 505
+E +L+ V L+K+ S + +V+E++ G + L F
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRF-SEPHA 143
Query: 506 LNIMIDVGSALEYLRHGHSSAPIIH-----------CEGEDSVTQ-----------TTTM 543
+ EYL S +I+ +G VT T
Sbjct: 144 RFYAAQIVLTFEYLH----SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLC 199
Query: 544 ATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHR 603
T +APE + D ++ GVL+ E P F + P +
Sbjct: 200 GTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP----FFADQ----------PIQ 245
Query: 604 LSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653
+ E + + VR FS+ + LL + KR
Sbjct: 246 IYEKIVSGKVRFPSHFSSDLKDLLR------NLLQVDLTKRFGNLKNGVN 289
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (139), Expect = 1e-09
Identities = 42/235 (17%), Positives = 68/235 (28%), Gaps = 54/235 (22%)
Query: 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILER 505
+E VL+N RH L + + D V+E+ G L L F +
Sbjct: 49 VAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEE-RA 107
Query: 506 LNIMIDVGSALEYLRHGHSSAPIIHCE-------------------------GEDSVTQT 540
++ SALEY S +++ + D T
Sbjct: 108 RFYGAEIVSALEY----LHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK 163
Query: 541 TTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL 600
T T Y+APE + D + GV++ E + P + + E +
Sbjct: 164 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL-FELILMEEI 222
Query: 601 --PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653
P LS L + P +R+ + AK
Sbjct: 223 RFPRTLSP---------------------EAKSLLAGLLKKDPKQRLGGGPSDAK 256
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 57.5 bits (138), Expect = 1e-09
Identities = 42/247 (17%), Positives = 76/247 (30%), Gaps = 47/247 (19%)
Query: 447 RSFDSECEVLRNVR-HRNLIKIISSCSNPDFK--ALVLEFMPNGSLEKWLYSHNYFLDIL 503
+ E ++L N+R N+I + +P + ALV E + N ++ + L
Sbjct: 74 KKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT----LTDY 129
Query: 504 ERLNIMIDVGSALEYL-------RHGHSSAPIIHCEG--------------EDSVTQTTT 542
+ M ++ AL+Y R +I E
Sbjct: 130 DIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVR 189
Query: 543 MATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVK---- 597
+A+ + PE + + D++S G +L RK P L R K
Sbjct: 190 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 249
Query: 598 ------------ESLPHRLSEVVDTNLVREEQAFSAKMDCLLS--IMDLALDCCMESPDK 643
E P + + R E+ ++ L+S +D
Sbjct: 250 EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQS 309
Query: 644 RMHMTDA 650
R+ +A
Sbjct: 310 RLTAREA 316
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (136), Expect = 2e-09
Identities = 47/248 (18%), Positives = 83/248 (33%), Gaps = 50/248 (20%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHR-NLIKIISSCSNPDFKALVLEFMPNGSLEKWL 493
K ++ + + +E +VL ++R L+ + + L+L+++ G L L
Sbjct: 61 KKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHL 120
Query: 494 YSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE--------------------- 532
F + + I VG + L H H II+ +
Sbjct: 121 SQRERFTE----HEVQIYVGEIVLALEHLHK-LGIIYRDIKLENILLDSNGHVVLTDFGL 175
Query: 533 -----GEDSVTQTTTMATIGYMAPE--YGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585
+++ TI YMAP+ G + D +S GVL+ E T P
Sbjct: 176 SKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASP---- 231
Query: 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645
FT + + +++ E + +M L DL M+ P KR+
Sbjct: 232 FTVDG----------EKNSQAEISRRILKSEPPYPQEMSALA--KDLIQRLLMKDPKKRL 279
Query: 646 HMTDAAAK 653
A
Sbjct: 280 GCGPRDAD 287
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 1e-07
Identities = 40/264 (15%), Positives = 72/264 (27%), Gaps = 52/264 (19%)
Query: 435 KLSSSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDFK------ALVLEFMPNGS 488
KLS + + E +++ V H+N+I +++ + LV+E M
Sbjct: 49 KLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANL 108
Query: 489 LEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS----SAPIIHCEGED--------- 535
+ D ++ + +++L P D
Sbjct: 109 CQVIQMEL----DHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG 164
Query: 536 -------SVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP------- 581
S T + T Y APE D++S G ++ E K
Sbjct: 165 LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI 224
Query: 582 -------------TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLS 628
E R E+ P ++ + L +
Sbjct: 225 DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKA 284
Query: 629 --IMDLALDCCMESPDKRMHMTDA 650
DL + P KR+ + DA
Sbjct: 285 SQARDLLSKMLVIDPAKRISVDDA 308
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 1e-07
Identities = 37/245 (15%), Positives = 81/245 (33%), Gaps = 10/245 (4%)
Query: 200 LDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGK 259
LDL L + + + + + + L S ++++ LS + +
Sbjct: 5 LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVS 61
Query: 260 -IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLS 318
+ ++ +KL L L S I NT +L LN+ + +E + S S
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 319 SLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQL 378
L NL+ + + + + S ++ + N + T + L
Sbjct: 122 RLDEL----NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177
Query: 379 QGFYVPENNLQGY-VPHDLCHLERLNILNLSG-NKLSGHIPPCLASLTSLRELHLGSNKL 436
+ ++ + + L L L+LS + L + +L+ L +
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 237
Query: 437 SSSIP 441
++
Sbjct: 238 DGTLQ 242
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 38/267 (14%), Positives = 84/267 (31%), Gaps = 12/267 (4%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG 113
L+L+ L + + +++ + L + R ++ M L+ + +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60
Query: 114 -SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF--NIIGGTIPSRIGNL 170
+ + SKL+ L L+ + PI N+L S L L + + + +
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 171 RKLVNLGLWSCNLQG------QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRIL 224
+L L L C + ++ L N + + + L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 225 TLESNQLSGRLPSTIGHSLRNIEYLALS-TNNLIGKIPNSITNATKLIGLDLGFNSFSGH 283
L + + L +++L+LS ++I + + L L + G
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 284 IPNTFGNLRHLSVLNVMMNNLTTESSS 310
+ L HL + + +
Sbjct: 241 LQLLKEALPHLQINCSHFTTIARPTIG 267
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 7e-07
Identities = 39/211 (18%), Positives = 58/211 (27%), Gaps = 8/211 (3%)
Query: 94 ELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLR 153
E+ ++ ++ L+ + P + IL L N +L +RL L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 154 AEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPP 213
+ T G L L L L LQ + S +P
Sbjct: 62 --LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPL 117
Query: 214 TIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGL 273
LP + +E L+L+ NNL + L L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 274 DLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304
L NS IP F L + N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 48/218 (22%), Positives = 68/218 (31%), Gaps = 35/218 (16%)
Query: 37 PICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELG 96
PIC +S + H V N L +P L +SEN + L
Sbjct: 2 PICE---VSKVASHLEV---NCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLM 52
Query: 97 QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN----------------------- 133
RL ++L + + G L L L L +N
Sbjct: 53 PYTRLTQLNLDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110
Query: 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGS 193
T +L L L+ L + N + P + KL L L + NL +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 194 LQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231
L+NL L L +N L IP F + L N
Sbjct: 171 LENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 32/215 (14%), Positives = 58/215 (26%), Gaps = 56/215 (26%)
Query: 166 RIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILT 225
+ + + + NL +P ++ + L L++N L T+ + + L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 226 LESNQLSGRLPSTIGHSL------------------------------------------ 243
L+ +L+ L
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 244 --RNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMM 301
++ L L N L P +T KL L L N+ + L +L L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 302 NNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
N+L ++ L L NP
Sbjct: 182 NSL---------YTIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 5e-04
Identities = 46/243 (18%), Positives = 72/243 (29%), Gaps = 29/243 (11%)
Query: 253 TNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD 312
+ +P + T + L L N T L+ LN+ LT
Sbjct: 18 DKRNLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL----Q 71
Query: 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372
L L N Q + +L + ++ FN L ++
Sbjct: 72 VDGTLPVLGTLDLSHNQ-----------LQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 373 GTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG 432
L +LQ Y+ N L+ P L +L L+L+ N L+ L L +L L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 433 SNKLSSSIPSSLAFRS----------FDSECEV--LRNVRHRNLIKIISSCSNPDFKALV 480
N L + + CE+ R N + D KA+
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMT 240
Query: 481 LEF 483
Sbjct: 241 SNV 243
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.1 bits (106), Expect = 2e-06
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 102 RVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG 161
RV+ LA+ L+ + L + L L +N P +L L LE+L+A N +
Sbjct: 1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57
Query: 162 TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210
+ + L Q + S L L+L N L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 6e-05
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115
L+L+ L T+ H L + LD+S N P L LR L V+ + N L
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59
Query: 116 PSWIGVLSKLRILRLDYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLV 174
+L+ L L N L + RL +L + N + L +++
Sbjct: 60 GVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 7/113 (6%)
Query: 198 KNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLI 257
+ L LA L+ L + + + L L N+L P+ + ++
Sbjct: 1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ----ASDNA 54
Query: 258 GKIPNSITNATKLIGLDLGFNSF-SGHIPNTFGNLRHLSVLNVMMNNLTTESS 309
+ + + N +L L L N + L +LN+ N+L E
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 162 TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTM 221
T+ + L + +L L L+ P + +L+ L+ L +DN L + + N+ +
Sbjct: 11 TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV--DGVANLPRL 67
Query: 222 RILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLI 271
+ L L +N+L S + L L N+L +++
Sbjct: 68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 222 RILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS 281
R+L L L+ + L + +L LS +N + +P ++ L L + +
Sbjct: 1 RVLHLAHKDLTV--LCHLEQ-LLLVTHLDLS-HNRLRALPPALAALRCLEVLQ--ASDNA 54
Query: 282 GHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP 341
+ NL L L + N L + + L +C L L L N L
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQ-------SAAIQPLVSCPRLVLLNLQGNSLCQE-E 106
Query: 342 QLIGNFSASLQNI 354
+ + L ++
Sbjct: 107 GIQERLAEMLPSV 119
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.8 bits (82), Expect = 0.003
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 349 ASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLS 408
L + +L N L P ++ L+ L+ +N L+ + L L
Sbjct: 17 EQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQ--ELLLC 73
Query: 409 GNKL-SGHIPPCLASLTSLRELHLGSNKLSS 438
N+L L S L L+L N L
Sbjct: 74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.0 bits (107), Expect = 9e-06
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 9/122 (7%)
Query: 30 NNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHG 89
+ S + I L L++S N
Sbjct: 239 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI- 297
Query: 90 HLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRL 149
LP +L RL ++N L+ P L+ L ++YN P+ ++ L
Sbjct: 298 ELPALPPRLERL---IASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIPESVEDL 349
Query: 150 EM 151
M
Sbjct: 350 RM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.3 bits (100), Expect = 6e-05
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 361 FNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCL 420
N + I + L+ V N L +P LERL S N L+ +P
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPE-- 321
Query: 421 ASLTSLRELHLGSNKLSS--SIPSSLAFRSFDS 451
+L++LH+ N L IP S+ +S
Sbjct: 322 -LPQNLKQLHVEYNPLREFPDIPESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 178 LWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237
+ +I + +L+ L++++NKL +P + L N L+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA----- 317
Query: 238 TIGHSLRNIEYLALSTNNL--IGKIPNSITN 266
+ +N++ L + N L IP S+ +
Sbjct: 318 EVPELPQNLKQLHVEYNPLREFPDIPESVED 348
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 33/120 (27%)
Query: 104 MSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTI 163
N S S + L L + N +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-------------------------EL 299
Query: 164 PSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRI 223
P+ L +L+ S N ++P QNLK L + N L P ++ +R+
Sbjct: 300 PALPPRLERLI----ASFNHLAEVP---ELPQNLKQLHVEYNPLREF-PDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.9 bits (86), Expect = 0.003
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 241 HSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVM 300
++E L +S N LI ++P L L FN + +P NL+ L V
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLKQLHVEY-- 333
Query: 301 MNNLTT 306
N L
Sbjct: 334 -NPLRE 338
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.8 bits (107), Expect = 1e-05
Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 46/178 (25%)
Query: 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFK---------------ALVLEFMPNGSLEK 491
+ + E ++L+ V + K S +N K +V E + L
Sbjct: 54 EAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLAL 113
Query: 492 WLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE------------------- 532
+ + ++ I + L+Y+ IIH +
Sbjct: 114 IKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPENLIQ 170
Query: 533 ---------GEDSVTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581
T ++ T Y +PE D++S L+ E T
Sbjct: 171 IKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL 228
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 11/217 (5%)
Query: 217 NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLG 276
++ + + ++ + L I L+ + I + LIGL+L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAF-GTGVTTIEG-VQYLNNLIGLELK 71
Query: 277 FNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPL 336
N + P L+ + + L + + L
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 337 GGILPQL--IGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPH 394
+ L I N S L + + T + L +L +N + P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 395 DLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHL 431
L L L ++L N++S P LA+ ++L + L
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.1 bits (100), Expect = 4e-05
Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 10/203 (4%)
Query: 242 SLRNIEYLALSTNNLIGKIPNS-ITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVM 300
+L N +A +N+ + + + T L G + G L +L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELK 71
Query: 301 MNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELG 360
N +T + + + L N++ + L + +
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 361 F--NDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP 418
I Y+ N Q L +L +L L NK+S P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 419 CLASLTSLRELHLGSNKLSSSIP 441
LASL +L E+HL +N++S P
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP 212
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 162 TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTM 221
+ + + NL KL L + P + SL NL + L +N++S + P + N S +
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219
Query: 222 RILTLESNQ 230
I+TL +NQ
Sbjct: 220 FIVTL-TNQ 227
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (101), Expect = 5e-05
Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 101 LRVMSLAYNKLSGS-FPSWIGVLSKLRILRLDYNNFTG----PIPNSLFNLSRLEMLRAE 155
++ + + +LS + + + +L + +++RLD T I ++L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 156 FNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ 186
N +G + + + + +LQ
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 8e-05
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 4/123 (3%)
Query: 196 NLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLSGRLPSTIGHSLR---NIEYLAL 251
++++LD+ +LS + + +++ L+ L+ I +LR + L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 252 STNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSA 311
+N L + + + + S G S L + S
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 312 DQW 314
Sbjct: 123 LLG 125
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 3e-04
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 9/133 (6%)
Query: 20 HAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVS 79
+ + + + S + +++ L D G+ S L
Sbjct: 314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 373
Query: 80 LDISENNFHG----HLPKELGQLRRLRVMSLAYNKLSGSFPSWIG-----VLSKLRILRL 130
L +++ + L L LR + L+ N L + + L L L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433
Query: 131 DYNNFTGPIPNSL 143
++ + + L
Sbjct: 434 YDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 4e-04
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 378 LQGFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSG----HIPPCLASLTSLRELHLG 432
+Q + L +L L++ ++ L L+ I L +L EL+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 433 SNKLSSSIPSSLA 445
SN+L +
Sbjct: 64 SNELGDVGVHCVL 76
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 8e-04
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 77 LVSLDISENNF-HGHLPKELGQLRRLRVMSLAYNKLSG----SFPSWIGVLSKLRILRLD 131
+ SLDI + L L++ +V+ L L+ S + V L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 132 YNNFTGPIPNSLFNL 146
N + +
Sbjct: 64 SNELGDVGVHCVLQG 78
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.004
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 169 NLRKLVNLGLWSCNLQGQ----IPTEIGSLQNLKNLDLADNKLSGLIPPTIF-----NIS 219
L L L C++ + + + +L+ LDL++N L +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 220 TMRILTLESNQLSGRLPSTIGHSLRNIEYL 249
+ L L S + + ++ L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.004
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 391 YVPHDLCHLERLNILNLSGNKLSG----HIPPCLASLTSLRELHLGSNKLSSSIPSSLA 445
L +L L+ +S + L + SLREL L +N L + L
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 42.6 bits (98), Expect = 1e-04
Identities = 30/294 (10%), Positives = 76/294 (25%), Gaps = 18/294 (6%)
Query: 163 IPSRIGNLRKLVNLGLWSCNLQGQ----IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNI 218
+ + + + + L + + + I S ++L+ + +D + +
Sbjct: 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82
Query: 219 STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI--TNATKLIGLDLG 276
+ L+ +L S E L + + G +
Sbjct: 83 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142
Query: 277 FNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD-QWSFLSSLTNCRNLSNLALASNP 335
+ N L + N L S + L + + +
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202
Query: 336 LGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHD 395
+ +L + + + + + ++ + L+ + + L
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262
Query: 396 L------CHLERLNILNLSGNKLSGHIPPCLAS-----LTSLRELHLGSNKLSS 438
+ L L L N++ L + + L L L N+ S
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 35/190 (18%), Positives = 56/190 (29%), Gaps = 10/190 (5%)
Query: 243 LRNIEYLALSTNNLIGKIPNS-ITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMM 301
L L N+ + + + T L LG S G L +L+ +N
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSN 71
Query: 302 NNLTTES--SSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFEL 359
N LT + + + + N L G+
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 360 GFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPC 419
+ TI + ++ Q L +L L L++S NK+S
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189
Query: 420 LASLTSLREL 429
LA LT+L L
Sbjct: 190 LAKLTNLESL 199
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 5e-04
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 5/127 (3%)
Query: 125 LRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ 184
LD L + +L ++ T+ N+ +L++L L + L
Sbjct: 22 GSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY 78
Query: 185 GQ--IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHS 242
+ + + NLK L+L+ N+L + L L+ N LS +
Sbjct: 79 RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138
Query: 243 LRNIEYL 249
E
Sbjct: 139 SAIRERF 145
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.002
Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 7/146 (4%)
Query: 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN 245
Q+ + + L L P + + +L S+ + I ++
Sbjct: 11 QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAA--TLRIIEENIPE 66
Query: 246 IEYLALSTNNLIGK--IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNN 303
+ L LS N L + + + A L L+L N L L + N+
Sbjct: 67 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126
Query: 304 LTTESSSADQWSFLSSLTNCRNLSNL 329
L+ + + L L
Sbjct: 127 LSDTFRDQSTYI-SAIRERFPKLLRL 151
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 0.001
Identities = 28/194 (14%), Positives = 58/194 (29%), Gaps = 8/194 (4%)
Query: 242 SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMM 301
+ L ++ + + + + + L +++ L +
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77
Query: 302 NNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGF 361
N LT A+ + + + +L+ + L N + + +
Sbjct: 78 NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137
Query: 362 NDLNGTIPTSIGTLQQLQGFY--VPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPC 419
+ G + T+ + + Q L L +L L LS N +S
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195
Query: 420 LASLTSLRELHLGS 433
LA L +L L L S
Sbjct: 196 LAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.002
Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 27/216 (12%)
Query: 133 NNFTGPIP-NSLFNLSRLEML-RAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTE 190
T P P +F+ + T L + + + +++
Sbjct: 6 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-- 63
Query: 191 IGSLQNLKNLDLADNKLSG------LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLR 244
I L N+ L L NKL+ L + ++ L S + +L S
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123
Query: 245 NIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNT-------FGNLRHLSVL 297
+ L + + T + L + + + L L L
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183
Query: 298 NVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALAS 333
+ N+++ L +L +NL L L S
Sbjct: 184 YLSKNHISD----------LRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.003
Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 21/194 (10%)
Query: 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK 110
NL + + L+ + + + ++ + + L + + L NK
Sbjct: 24 AETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNK 79
Query: 111 LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170
L+ P L + + + S +I G ++ +L
Sbjct: 80 LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139
Query: 171 RKLVNLGL--------------WSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF 216
N + Q + L L+NL L+ N +S L +
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RALA 197
Query: 217 NISTMRILTLESNQ 230
+ + +L L +Q
Sbjct: 198 GLKNLDVLEL-FSQ 210
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 34/237 (14%), Positives = 64/237 (27%), Gaps = 23/237 (9%)
Query: 222 RILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS 281
R+ + ++++ +PS + RN L L + + L +++ N
Sbjct: 11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66
Query: 282 GHIPNTFG----------------NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRN 325
I L + NL S L + +
Sbjct: 67 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126
Query: 326 LSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPE 385
L + L I +F L N + + Q +
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186
Query: 386 NNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPS 442
NNL+ IL++S ++ L +L LR + K +P+
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.004
Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 5/148 (3%)
Query: 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKEL-GQLRRLRVMSLAYNKLS 112
+ L + G H L L I HL L LR +++ + L
Sbjct: 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 113 GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK 172
P +L L L +N ++ LS E++ + + + +
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129
Query: 173 LVNLGLWSCNLQGQIPTEIGSLQNLKNL 200
G+ LQ G L ++ N
Sbjct: 130 EGLGGVPEQKLQCHGQ---GPLAHMPNA 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 669 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 100.0 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 100.0 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 100.0 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.97 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.97 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.97 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.97 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.97 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.97 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.97 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.97 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.97 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.97 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.97 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.97 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.97 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.97 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.97 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.97 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.96 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.96 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.96 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.96 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.96 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.96 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.96 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.96 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.96 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.96 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.96 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.96 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.96 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.96 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.96 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.95 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.95 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.95 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.95 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.95 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.95 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.95 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.94 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.94 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.94 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.94 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.93 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.92 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.92 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.91 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.91 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.91 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.91 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.91 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.9 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.9 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.9 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.81 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.74 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.74 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.71 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.6 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.58 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.49 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.45 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.41 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.39 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.38 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.33 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.23 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.22 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.14 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.13 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.25 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.14 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 97.75 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.14 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.94 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.24 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 94.19 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=1.4e-40 Score=338.25 Aligned_cols=292 Identities=28% Similarity=0.483 Sum_probs=264.3
Q ss_pred CChhhHHHHHHHHhhcCCCcccccCCCCCCCCCC--CccceeeCCC--CCCEEEEEcCCCCCcc--cccccccCCCCCCE
Q 040540 6 DLTTDQSSLLAFKAHAFDYRSALANNWSISYPIC--SWAGISCGSR--HQRVTALNLSDMGLGG--TIPLHFGNLSFLVS 79 (669)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~l~~~w~~~~~~c--~~~g~~c~~~--~~~v~~L~ls~~~l~~--~~~~~~~~l~~L~~ 79 (669)
++++|++||++||+++.+|. .+.+ |..+.|+| .|.||+|+.. ..+|+.|||+++++.| .+|+++++|++|++
T Consensus 3 c~~~e~~aLl~~k~~~~~~~-~l~s-W~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~ 80 (313)
T d1ogqa_ 3 CNPQDKQALLQIKKDLGNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCHHHHHHHHHHHHHCCCCC-cCCC-CCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence 57889999999999998775 5665 98888999 5999999864 3489999999999988 47899999999999
Q ss_pred EeCCC-CcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccc
Q 040540 80 LDISE-NNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI 158 (669)
Q Consensus 80 L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (669)
|+|++ |++.|.+|..|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+.+.+|..+.++++|+.+++++|.
T Consensus 81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~ 160 (313)
T d1ogqa_ 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence 99997 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccCCCCCC-CEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccch
Q 040540 159 IGGTIPSRIGNLRKL-VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237 (669)
Q Consensus 159 l~~~~p~~~~~L~~L-~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (669)
+.+.+|..+..+.++ +.++++.|++++..|..+..+.. ..++++.|...+.+|..+..+++++.+++++|.+.+.+|.
T Consensus 161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~ 239 (313)
T d1ogqa_ 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998886 88999999999999998888764 4799999999999999999999999999999999876663
Q ss_pred hhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCc
Q 040540 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNN 303 (669)
Q Consensus 238 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~ 303 (669)
+. .+++|++|++++|+++|.+|..+.++++|+.|++++|+++|.+|. ++++++|+.+++.+|+
T Consensus 240 -~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 240 -VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp -CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred -cc-cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 44 578999999999999999999999999999999999999998884 5778888888888886
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-35 Score=291.63 Aligned_cols=198 Identities=21% Similarity=0.328 Sum_probs=154.2
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.|.+|+.++.+++|||||++++++.. ...++|||||++|+|.++++..+..+++..+..|+.|+++||+|||.
T Consensus 48 ~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~---- 122 (276)
T d1uwha_ 48 LQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA---- 122 (276)
T ss_dssp HHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhc----
Confidence 3567789999999999999999998865 45689999999999999998766779999999999999999999995
Q ss_pred CCeeecCCCCcc---------------------------cccccccccccCccccccC---CCcCccccchhhHHHHHHH
Q 040540 526 APIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 526 ~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gvil~el 575 (669)
.+|+|||+|+.. ...+..||+.|||||++.. ..|+.|+|||||||++|||
T Consensus 123 ~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el 202 (276)
T d1uwha_ 123 KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYEL 202 (276)
T ss_dssp TTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHH
Confidence 479999999530 1122358999999999864 3589999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+||+.||.+... ...+...+...... +.+.. .+.+++..+.+++.+||+.||++||||+||++.|+
T Consensus 203 ~tg~~Pf~~~~~-~~~~~~~~~~~~~~-------p~~~~------~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le 268 (276)
T d1uwha_ 203 MTGQLPYSNINN-RDQIIFMVGRGYLS-------PDLSK------VRSNCPKAMKRLMAECLKKKRDERPLFPQILASIE 268 (276)
T ss_dssp HHSSCTTTTCCC-HHHHHHHHHHTSCC-------CCGGG------SCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHCCCCCCCCCh-HHHHHHHHhcCCCC-------Ccchh------ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 999999976422 11222223322211 11100 12233456889999999999999999999999999
Q ss_pred HhHHHhh
Q 040540 656 KIKVKFL 662 (669)
Q Consensus 656 ~~~~~~~ 662 (669)
.+.+.++
T Consensus 269 ~l~~~~P 275 (276)
T d1uwha_ 269 LLARSLP 275 (276)
T ss_dssp HHHHTCC
T ss_pred HHHHcCC
Confidence 9887654
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.6e-34 Score=287.65 Aligned_cols=196 Identities=21% Similarity=0.378 Sum_probs=156.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.|.+|+.++++++|||||+++++|...+..++|||||++|+|.+++......++|.++..|+.|+++||+|||. .
T Consensus 72 ~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~----~ 147 (299)
T d1jpaa_ 72 RDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLAD----M 147 (299)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhh----C
Confidence 467889999999999999999999999999999999999999999998766779999999999999999999995 4
Q ss_pred CeeecCCCCcc------------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+|+|||+|+.. ......||+.|||||++.++.|+.++|||||||++|||+
T Consensus 148 ~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~ 227 (299)
T d1jpaa_ 148 NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVM 227 (299)
T ss_dssp TCCCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHH
Confidence 79999999530 001123688999999999999999999999999999999
Q ss_pred h-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 T-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
| |+.||.+.. ...+...+...... +.+.+++..+.+++.+||+.||++||||.||++.|+
T Consensus 228 t~g~~Pf~~~~--~~~~~~~i~~~~~~-----------------~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~ 288 (299)
T d1jpaa_ 228 SYGERPYWDMT--NQDVINAIEQDYRL-----------------PPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLD 288 (299)
T ss_dssp TTSCCTTTTCC--HHHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred hCCCCCCCCCC--HHHHHHHHHcCCCC-----------------CCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 8 899997632 22233333322111 112234456789999999999999999999999999
Q ss_pred HhHHHhhhhhh
Q 040540 656 KIKVKFLDDVA 666 (669)
Q Consensus 656 ~~~~~~~~~~~ 666 (669)
++.+. ++.+.
T Consensus 289 ~~l~~-p~slk 298 (299)
T d1jpaa_ 289 KMIRN-PNSLK 298 (299)
T ss_dssp HHHHS-GGGGT
T ss_pred HHhcC-hhhCC
Confidence 88654 34443
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-34 Score=281.02 Aligned_cols=191 Identities=24% Similarity=0.356 Sum_probs=151.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.|.+|+..+++++||||++++++|..++..++|||||++|+|.+++......+++..+..|+.|+|+||+|+|. .
T Consensus 45 ~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~----~ 120 (263)
T d1sm2a_ 45 EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEE----A 120 (263)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhc----c
Confidence 467789999999999999999999999999999999999999999998777778999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC-
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK- 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~- 579 (669)
+|+|||+|+.. ......||+.|||||++.+..|+.|+|||||||++|||+||.
T Consensus 121 ~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~ 200 (263)
T d1sm2a_ 121 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGK 200 (263)
T ss_dssp TCCCTTCSGGGEEECGGGCEEECSCC------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred ceeecccchhheeecCCCCeEecccchheeccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCC
Confidence 79999999530 011235889999999999999999999999999999999964
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
+|+... ....+...+........ +..++..+.+++.+||+.||++||||+||++.|+++.+
T Consensus 201 ~~~~~~--~~~~~~~~i~~~~~~~~-----------------p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~e 261 (263)
T d1sm2a_ 201 IPYENR--SNSEVVEDISTGFRLYK-----------------PRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE 261 (263)
T ss_dssp CTTCSC--CHHHHHHHHHHTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCC--CHHHHHHHHHhcCCCCC-----------------ccccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence 444331 22223333333221110 11233467899999999999999999999999999876
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 262 s 262 (263)
T d1sm2a_ 262 S 262 (263)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-34 Score=282.10 Aligned_cols=196 Identities=17% Similarity=0.331 Sum_probs=156.8
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.|.+|+.++.+++|||||+++++|.. +..++|||||++|+|.+++...+..+++..+.+|+.|+++||+|||.
T Consensus 53 ~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~---- 127 (285)
T d1u59a_ 53 TEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE---- 127 (285)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 3467789999999999999999999865 45689999999999999988766789999999999999999999995
Q ss_pred CCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+|+|||+|+.. ......||+.|||||++.+..++.|+|||||||++|||+|
T Consensus 128 ~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt 207 (285)
T d1u59a_ 128 KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALS 207 (285)
T ss_dssp TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHT
T ss_pred CCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHh
Confidence 489999999530 0112248899999999998899999999999999999998
Q ss_pred -CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 578 -RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 578 -g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
|+.||.... ...+...+....... .+..++..+.+++.+||+.||++||||.+|++.|+.
T Consensus 208 ~G~~Pf~~~~--~~~~~~~i~~~~~~~-----------------~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~ 268 (285)
T d1u59a_ 208 YGQKPYKKMK--GPEVMAFIEQGKRME-----------------CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRA 268 (285)
T ss_dssp TSCCTTTTCC--THHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCCCCCC--HHHHHHHHHcCCCCC-----------------CCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence 899997643 222333333322111 122334567899999999999999999999999998
Q ss_pred hHHHhhhhh
Q 040540 657 IKVKFLDDV 665 (669)
Q Consensus 657 ~~~~~~~~~ 665 (669)
+-..+..++
T Consensus 269 ~~~~~~~~~ 277 (285)
T d1u59a_ 269 CYYSLASKV 277 (285)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhhcc
Confidence 876654443
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3e-33 Score=276.73 Aligned_cols=188 Identities=20% Similarity=0.325 Sum_probs=149.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.|.+|+.++++++|||||+++++|..+ ..++|||||++|+|.+++++. ..+++..+.+|+.|+++||+|||. .
T Consensus 53 ~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~lvmE~~~~g~L~~~l~~~-~~l~~~~~~~i~~qi~~gl~ylH~----~ 126 (277)
T d1xbba_ 53 DELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEE----S 126 (277)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEESS-SEEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCceEEEEeccC-CEEEEEEcCCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHhhHHh----C
Confidence 4577899999999999999999998654 458999999999999999853 568999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+.. ......||+.|||||++.+..++.|+|||||||++|||+|
T Consensus 127 ~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~ 206 (277)
T d1xbba_ 127 NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSY 206 (277)
T ss_dssp TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred CcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhC
Confidence 79999999540 0111248899999999999899999999999999999998
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.+.. ...+...+...... +.+..++..+.+++.+||+.||++||||++|++.|+..
T Consensus 207 g~~Pf~~~~--~~~~~~~i~~~~~~-----------------~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~ 267 (277)
T d1xbba_ 207 GQKPYRGMK--GSEVTAMLEKGERM-----------------GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 267 (277)
T ss_dssp TCCSSTTCC--HHHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCCCC--HHHHHHHHHcCCCC-----------------CCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence 899997632 22233333322111 11223345678999999999999999999999999876
Q ss_pred HH
Q 040540 658 KV 659 (669)
Q Consensus 658 ~~ 659 (669)
-.
T Consensus 268 ~~ 269 (277)
T d1xbba_ 268 YY 269 (277)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.5e-33 Score=271.48 Aligned_cols=184 Identities=17% Similarity=0.229 Sum_probs=145.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++||||+++++++..++..++|||||++|+|.+++.. ...+++.+...|+.|+++|++|||. .
T Consensus 48 ~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~~~~i~~qi~~al~ylH~----~ 122 (271)
T d1nvra_ 48 ENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHG----I 122 (271)
T ss_dssp -CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH----c
Confidence 3567899999999999999999999999999999999999999999975 4568999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|||+|+.. .....+||+.|||||++.+..+ +.++||||+||++|||+||
T Consensus 123 ~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G 202 (271)
T d1nvra_ 123 GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 202 (271)
T ss_dssp TEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhC
Confidence 79999999530 1223469999999999987765 6789999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||............+....... ..+...+..+.+++.+||+.||++|||++|+++
T Consensus 203 ~~pf~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 259 (271)
T d1nvra_ 203 ELPWDQPSDSCQEYSDWKEKKTYL-----------------NPWKKIDSAPLALLHKILVENPSARITIPDIKK 259 (271)
T ss_dssp SCSCSSSSTTSHHHHHHHTTCTTS-----------------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCCChHHHHHHHHhcCCCCC-----------------CccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 999976433222222221111000 011223356789999999999999999999865
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.5e-32 Score=278.60 Aligned_cols=187 Identities=21% Similarity=0.353 Sum_probs=149.5
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC----------------------CccCHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN----------------------YFLDIL 503 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----------------------~~l~~~ 503 (669)
..+..|+.++.++ +|||||+++++|...+..++|||||++|+|.++++... ..+++.
T Consensus 85 ~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 164 (325)
T d1rjba_ 85 EALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFE 164 (325)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHH
T ss_pred HHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHH
Confidence 3566789999888 89999999999999999999999999999999997532 247889
Q ss_pred HHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccC
Q 040540 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 504 ~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
.+..|+.|+++||+|||. .+|+|||+|+.. ...+..||+.|||||++.+
T Consensus 165 ~~~~i~~qi~~gl~yLH~----~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~ 240 (325)
T d1rjba_ 165 DLLCFAYQVAKGMEFLEF----KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFE 240 (325)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----CCeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcC
Confidence 999999999999999995 479999999530 0112347999999999999
Q ss_pred CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..|+.|+|||||||++|||+| |+.||...... ..+...+...... +.+..++..+.+++.+
T Consensus 241 ~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~-~~~~~~~~~~~~~-----------------~~p~~~~~~l~~li~~ 302 (325)
T d1rjba_ 241 GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD-ANFYKLIQNGFKM-----------------DQPFYATEEIYIIMQS 302 (325)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHH
T ss_pred CCCCcceeccchhHHHHHHHhCCCCCCCCCCHH-HHHHHHHhcCCCC-----------------CCCCcCCHHHHHHHHH
Confidence 999999999999999999998 89999764322 2233333332211 1122334568899999
Q ss_pred cccCCCCCCCCHHHHHHHHH
Q 040540 636 CCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~ 655 (669)
||+.||++||||+||++.|.
T Consensus 303 cl~~dP~~RPt~~ei~~~L~ 322 (325)
T d1rjba_ 303 CWAFDSRKRPSFPNLTSFLG 322 (325)
T ss_dssp HTCSSGGGSCCHHHHHHHHH
T ss_pred HcCCChhHCcCHHHHHHHHh
Confidence 99999999999999999885
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-32 Score=272.27 Aligned_cols=192 Identities=20% Similarity=0.354 Sum_probs=153.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..|.+|+.++++++|||||+++|+|......++|||||.+|++.+++.+....++|.++.+|+.|+++|++|||. .
T Consensus 54 ~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~----~ 129 (283)
T d1mqba_ 54 VDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN----M 129 (283)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccc----c
Confidence 357789999999999999999999999899999999999999999998777789999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|||+|+.. ......||+.|||||++.+..++.|+|||||||++|||+||
T Consensus 130 ~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~ 209 (283)
T d1mqba_ 130 NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTY 209 (283)
T ss_dssp TCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred ccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhC
Confidence 79999999530 01112478999999999999999999999999999999997
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
..|+.... ....+.+.+...... +.+.+++..+.+++.+||+.||++||||.||++.|+++.
T Consensus 210 ~~~~~~~~-~~~~~~~~i~~~~~~-----------------~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~ 271 (283)
T d1mqba_ 210 GERPYWEL-SNHEVMKAINDGFRL-----------------PTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLI 271 (283)
T ss_dssp SCCTTTTC-CHHHHHHHHHTTCCC-----------------CCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCccccC-CHHHHHHHHhccCCC-----------------CCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHh
Confidence 66654321 222233333322211 112233456789999999999999999999999999887
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
+.
T Consensus 272 ~~ 273 (283)
T d1mqba_ 272 RA 273 (283)
T ss_dssp HS
T ss_pred hC
Confidence 54
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.5e-33 Score=275.48 Aligned_cols=186 Identities=20% Similarity=0.277 Sum_probs=148.0
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.+..|+.+++.++|||||++++++..++..++|||||++|+|.+++.+....+++.++..|+.|+++||+|||..
T Consensus 53 ~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~--- 129 (288)
T d2jfla1 53 LEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN--- 129 (288)
T ss_dssp GGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 35678899999999999999999999999999999999999999999876566799999999999999999999954
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCcccccc-----CCCcCccccchhhHHHHHHH
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~el 575 (669)
+|+|||+|+.. ...+..||+.|||||++. ...|+.|+|||||||++|||
T Consensus 130 -~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyem 208 (288)
T d2jfla1 130 -KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 208 (288)
T ss_dssp -TEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHH
T ss_pred -CEEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHH
Confidence 79999999541 112346999999999873 45589999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+||+.||..... ..+...+....+... ..+...+..+.+++.+||+.||++|||++|+++
T Consensus 209 ltg~~Pf~~~~~--~~~~~~i~~~~~~~~---------------~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~ 268 (288)
T d2jfla1 209 AEIEPPHHELNP--MRVLLKIAKSEPPTL---------------AQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ 268 (288)
T ss_dssp HHSSCTTTTSCG--GGHHHHHHHSCCCCC---------------SSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhCCCCCCCCCH--HHHHHHHHcCCCCCC---------------CccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 999999976432 222222222111111 112233456789999999999999999999976
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-32 Score=267.92 Aligned_cols=192 Identities=26% Similarity=0.359 Sum_probs=150.5
Q ss_pred cccCchhhhhhccccccccceecccccc-ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+.+.+|+.++++++||||++++++|.. ....++||||+++|+|.+++...+ ..++|..+.+|+.|++.|++|||.
T Consensus 44 ~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~-- 121 (262)
T d1byga_ 44 AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG-- 121 (262)
T ss_dssp -HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhcccccc--
Confidence 3567889999999999999999998865 456789999999999999997532 358999999999999999999995
Q ss_pred CCCCeeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCC
Q 040540 524 SSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKR 580 (669)
Q Consensus 524 ~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~ 580 (669)
.+|+|||+++.. ......+|..|+|||++.+..++.++|||||||++|||+| |+.
T Consensus 122 --~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~ 199 (262)
T d1byga_ 122 --NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRV 199 (262)
T ss_dssp --TTCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred --CceeccccchHhheecCCCCEeecccccceecCCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCC
Confidence 489999999541 1112347889999999998899999999999999999999 677
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
|+... ....+..++....... .+...+..+.+++.+||..||.+||||.|++++|++++.+
T Consensus 200 p~~~~--~~~~~~~~i~~~~~~~-----------------~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~~ 260 (262)
T d1byga_ 200 PYPRI--PLKDVVPRVEKGYKMD-----------------APDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 260 (262)
T ss_dssp SCTTS--CGGGHHHHHTTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCC--CHHHHHHHHHcCCCCC-----------------CCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHhC
Confidence 77653 2233444443322111 1122335678999999999999999999999999999865
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2e-32 Score=272.28 Aligned_cols=190 Identities=21% Similarity=0.327 Sum_probs=152.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.|.+|+.+++.++|||||+++++|...+..++|||||++|+|.+++.. ....+++..+..|+.|+++||+|||+
T Consensus 58 ~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~---- 133 (287)
T d1opja_ 58 EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---- 133 (287)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH----
Confidence 4577899999999999999999999999999999999999999999975 34578999999999999999999995
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|+|||+|+.. ......||+.|||||++.+..|+.|+|||||||++|||+||+
T Consensus 134 ~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~ 213 (287)
T d1opja_ 134 KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 213 (287)
T ss_dssp TTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTS
T ss_pred CCcccCccccCeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCC
Confidence 479999999540 011224788999999999999999999999999999999987
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
.|+.... ....+.+.+....... .+...+..+.+++.+||+.||++||||+||++.|+.+.
T Consensus 214 ~p~~~~~-~~~~~~~~i~~~~~~~-----------------~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~ 274 (287)
T d1opja_ 214 MSPYPGI-DLSQVYELLEKDYRME-----------------RPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 274 (287)
T ss_dssp CCSSTTC-CHHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CCCCCcc-hHHHHHHHHhcCCCCC-----------------CCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 7764321 2222333333222111 12233456789999999999999999999999998864
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.5e-32 Score=268.53 Aligned_cols=188 Identities=20% Similarity=0.332 Sum_probs=152.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.|.+|+.+++.++||||++++|+|..++..++||||+++|++.+++......+++..+.+++.|+++|++|||+ .
T Consensus 44 ~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~----~ 119 (258)
T d1k2pa_ 44 DEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES----K 119 (258)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhh----c
Confidence 467789999999999999999999999899999999999999999988766778999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+|+|||+|+.. ......||+.|+|||.+.+..++.|+|||||||++|||+| |+
T Consensus 120 ~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~ 199 (258)
T d1k2pa_ 120 QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGK 199 (258)
T ss_dssp TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCC
Confidence 79999998430 1112348899999999999899999999999999999998 89
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
.||..... ..+...+...... +.+..++..+.+++.+||+.||++||||+||++.|.+|
T Consensus 200 ~Pf~~~~~--~~~~~~i~~~~~~-----------------~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di 258 (258)
T d1k2pa_ 200 MPYERFTN--SETAEHIAQGLRL-----------------YRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDV 258 (258)
T ss_dssp CTTTTSCH--HHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred CCCCCCCH--HHHHHHHHhCCCC-----------------CCcccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence 99976432 1222222222111 01122335678999999999999999999999998754
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.5e-32 Score=271.33 Aligned_cols=190 Identities=20% Similarity=0.328 Sum_probs=147.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.|.+|+.++++++|||||+++++|.. +..++|||||++|+|.+++... +..+++..+.+|+.|+++|++|||.
T Consensus 53 ~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~---- 127 (272)
T d1qpca_ 53 DAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---- 127 (272)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 457889999999999999999998764 4568999999999999988653 2358999999999999999999995
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|+|||+|+.. ......||+.|||||++.+..++.|+|||||||++|||+||.
T Consensus 128 ~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~ 207 (272)
T d1qpca_ 128 RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 207 (272)
T ss_dssp TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCccchhheeeecccceeeccccceEEccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCC
Confidence 479999999530 112235889999999998888999999999999999999976
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.|+.... ....+...+....... .+..++..+.+++.+||+.||++||||+||+++|+++-.
T Consensus 208 ~~~~~~~-~~~~~~~~i~~~~~~~-----------------~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft 269 (272)
T d1qpca_ 208 RIPYPGM-TNPEVIQNLERGYRMV-----------------RPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT 269 (272)
T ss_dssp CCSSTTC-CHHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCC-CHHHHHHHHHhcCCCC-----------------CcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence 6654321 2222333332221110 112234567899999999999999999999999998643
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-32 Score=268.68 Aligned_cols=180 Identities=20% Similarity=0.267 Sum_probs=145.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.+++.++||||+++++++..++..++|||||++|+|.+++... ..+++.....|+.|+++||+|||. .+
T Consensus 52 ~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~~~-~~l~e~~~~~i~~qi~~al~~lH~----~~ 126 (263)
T d2j4za1 52 QLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANALSYCHS----KR 126 (263)
T ss_dssp HHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4667999999999999999999999999999999999999999999853 458999999999999999999995 47
Q ss_pred eeecCCCCc-----------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 528 IIHCEGEDS-----------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 528 i~h~d~~~~-----------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
|+|||+|+. .......||+.|||||++.+..|+.++|||||||++|||+||+.||..
T Consensus 127 ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~ 206 (263)
T d2j4za1 127 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA 206 (263)
T ss_dssp CCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCC
T ss_pred eeeeeeccccceecCCCCEeecccceeeecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCC
Confidence 999999954 111233599999999999998899999999999999999999999965
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.. ...+...+..... .. +...+..+.+++.+||+.||++|||++|+++
T Consensus 207 ~~--~~~~~~~i~~~~~-~~-----------------p~~~s~~~~~li~~~L~~dp~~R~t~~eil~ 254 (263)
T d2j4za1 207 NT--YQETYKRISRVEF-TF-----------------PDFVTEGARDLISRLLKHNPSQRPMLREVLE 254 (263)
T ss_dssp SS--HHHHHHHHHTTCC-CC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CC--HHHHHHHHHcCCC-CC-----------------CccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence 32 1111111111110 00 1123346789999999999999999999975
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.3e-32 Score=267.62 Aligned_cols=185 Identities=22% Similarity=0.364 Sum_probs=141.7
Q ss_pred ccCchhhhhhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+.+.+|+.++++++|||||++++++.. ....++||||+++|+|.+++.+. ..+++.....++.|+++||+|||..
T Consensus 53 ~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~gl~yLH~~ 131 (270)
T d1t4ha_ 53 QRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTR 131 (270)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhcc-ccccHHHHHHHHHHHHHHHHHHHHC
Confidence 457789999999999999999998754 34578999999999999999753 4689999999999999999999954
Q ss_pred CCCCCeeecCCCCc------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 523 HSSAPIIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 523 ~~~~~i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.++|+|||+|+. ....+.+||+.|||||++.+ +|+.++|||||||++|||+||
T Consensus 132 --~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g 208 (270)
T d1t4ha_ 132 --TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATS 208 (270)
T ss_dssp --SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHS
T ss_pred --CCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHC
Confidence 345999999953 01123369999999998865 599999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ...+...+....+. .. .+...+.++.+++.+||+.||++|||++|+++
T Consensus 209 ~~Pf~~~~~-~~~~~~~i~~~~~~---~~-------------~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~ 265 (270)
T d1t4ha_ 209 EYPYSECQN-AAQIYRRVTSGVKP---AS-------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 265 (270)
T ss_dssp SCTTTTCSS-HHHHHHHHTTTCCC---GG-------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCCccc-HHHHHHHHHcCCCC---cc-------------cCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence 999965321 11121211111110 00 01122345789999999999999999999975
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.8e-32 Score=268.21 Aligned_cols=187 Identities=18% Similarity=0.222 Sum_probs=136.3
Q ss_pred ccCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+.+|+.+++.++||||+++++++.. ....++|||||++|+|.+++.+ .+..+++.....++.|++.||+|||.
T Consensus 48 ~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~ 127 (269)
T d2java1 48 QMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR 127 (269)
T ss_dssp HHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999998854 4567899999999999999864 24568999999999999999999996
Q ss_pred CC-CCCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 522 GH-SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 522 ~~-~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.+ ...+|+|||+|+.. ...+..||+.|||||++.+..|+.|+|||||||++|||
T Consensus 128 ~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel 207 (269)
T d2java1 128 RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 207 (269)
T ss_dssp HCC---------CCGGGEEECTTSCEEECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHH
Confidence 42 23469999999540 11234699999999999998999999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+||+.||.... ...+...+.......+ +...+.++.+++.+||+.||.+|||+.|+++
T Consensus 208 ~tg~~Pf~~~~--~~~~~~~i~~~~~~~~-----------------~~~~s~~l~~li~~~L~~dp~~Rps~~ell~ 265 (269)
T d2java1 208 CALMPPFTAFS--QKELAGKIREGKFRRI-----------------PYRYSDELNEIITRMLNLKDYHRPSVEEILE 265 (269)
T ss_dssp HHSSCSCCCSS--HHHHHHHHHHTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhCCCCCCCCC--HHHHHHHHHcCCCCCC-----------------CcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 99999997532 2222222222111110 1122346789999999999999999999864
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.5e-32 Score=266.87 Aligned_cols=190 Identities=20% Similarity=0.321 Sum_probs=152.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++++++||||++++++|. .+..++||||+++|++.+++......+++..+..++.|+++|++|||. .
T Consensus 53 ~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~----~ 127 (273)
T d1mp8a_ 53 EKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLES----K 127 (273)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcc----c
Confidence 45778999999999999999999986 456789999999999999988777789999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|||+|+.. ......||+.|+|||++.+..|+.++|||||||++|||+| |+
T Consensus 128 ~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~ 207 (273)
T d1mp8a_ 128 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 207 (273)
T ss_dssp TCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSC
T ss_pred CeeccccchhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCC
Confidence 79999999540 1122347899999999999999999999999999999998 88
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... ...+...+....... .+..++..+.+++.+||+.||++||||.||++.|+.+.+
T Consensus 208 ~P~~~~~--~~~~~~~i~~~~~~~-----------------~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~ 268 (273)
T d1mp8a_ 208 KPFQGVK--NNDVIGRIENGERLP-----------------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 268 (273)
T ss_dssp CTTTTCC--GGGHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHcCCCCC-----------------CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 8987643 223333333221111 122334567899999999999999999999999998865
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 269 ~ 269 (273)
T d1mp8a_ 269 E 269 (273)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.8e-32 Score=270.14 Aligned_cols=183 Identities=20% Similarity=0.233 Sum_probs=146.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++||||+++++++..++..++|||||++|+|.+++.+ ..+++.+...|+.|++.||+|||. .
T Consensus 62 ~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~--~~l~~~~~~~i~~qi~~aL~yLH~----~ 135 (293)
T d1yhwa1 62 ELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHS----N 135 (293)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3467899999999999999999999999999999999999999998875 358999999999999999999995 4
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+. ......+||+.|||||++.+..|+.++||||+||++|||+||+.|
T Consensus 136 ~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~P 215 (293)
T d1yhwa1 136 QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215 (293)
T ss_dssp TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCcccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCC
Confidence 7999999953 011233599999999999999999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|...... ..+........+. . +.+...+..+.+++.+||+.||++|||+.|+++
T Consensus 216 f~~~~~~-~~~~~~~~~~~~~-~---------------~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 269 (293)
T d1yhwa1 216 YLNENPL-RALYLIATNGTPE-L---------------QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269 (293)
T ss_dssp TTTSCHH-HHHHHHHHHCSCC-C---------------SSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCCHH-HHHHHHHhCCCCC-C---------------CCcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 9653211 1111122221111 0 112233456789999999999999999999975
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=1.5e-31 Score=268.15 Aligned_cols=185 Identities=20% Similarity=0.242 Sum_probs=142.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+.+|+.+++.++||||+++++++..++..++|||||++|+|.+++.+ ...+++.+...|+.|++.||+|||. .
T Consensus 52 ~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~al~ylH~----~ 126 (307)
T d1a06a_ 52 GSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVE-KGFYTERDASRLIFQVLDAVKYLHD----L 126 (307)
T ss_dssp ---CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CSCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhc-ccCCCHHHHHHHHHHHHHHHHhhhh----c
Confidence 3567899999999999999999999999999999999999999999975 4568999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ...+.+||+.|||||++.+..|+.++||||+||++|||+||+
T Consensus 127 ~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~ 206 (307)
T d1a06a_ 127 GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 206 (307)
T ss_dssp TCCCSCCCGGGEEESSSSTTCCEEECCC------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred eeeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCC
Confidence 79999998430 112335999999999999989999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.+.. ...+...+...... .. .+.+.+.+..+.+++.+||+.||++|||++|+++
T Consensus 207 ~Pf~~~~--~~~~~~~i~~~~~~-~~-------------~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 263 (307)
T d1a06a_ 207 PPFYDEN--DAKLFEQILKAEYE-FD-------------SPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ 263 (307)
T ss_dssp CSCCCSS--HHHHHHHHHTTCCC-CC-------------TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCCCCC--HHHHHHHHhccCCC-CC-------------CccccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence 9997532 11222222211110 00 0112233456789999999999999999999987
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1e-31 Score=270.02 Aligned_cols=196 Identities=18% Similarity=0.336 Sum_probs=154.6
Q ss_pred cccCchhhhhhccccccccceecccccc-ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+.|..|+.++++++|||+++++|+|.. +...++|||||++|+|.+++.......++..+..++.|+++|+.|+|.
T Consensus 72 ~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~--- 148 (311)
T d1r0pa_ 72 VSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLAS--- 148 (311)
T ss_dssp HHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcc---
Confidence 3568899999999999999999999865 457789999999999999998777778899999999999999999995
Q ss_pred CCCeeecCCCCcc-----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 525 SAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 525 ~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
++|+|||+|+.. ......||+.|+|||...+..++.|+|||||||++|||
T Consensus 149 -~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El 227 (311)
T d1r0pa_ 149 -KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 227 (311)
T ss_dssp -TTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred -cCcccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHH
Confidence 479999999530 01123488999999999999999999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+||+.|+.... ....+..++....... .+..++..+.+++.+||+.||++||+|.||++.|+
T Consensus 228 ~t~~~p~~~~~-~~~~~~~~i~~g~~~~-----------------~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~ 289 (311)
T d1r0pa_ 228 MTRGAPPYPDV-NTFDITVYLLQGRRLL-----------------QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 289 (311)
T ss_dssp HTTSCCSCC-------CHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHCCCCCCCCC-CHHHHHHHHHcCCCCC-----------------CcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 99888875422 2222333333221110 01123346789999999999999999999999999
Q ss_pred HhHHHhhh
Q 040540 656 KIKVKFLD 663 (669)
Q Consensus 656 ~~~~~~~~ 663 (669)
++...+..
T Consensus 290 ~i~~~~~~ 297 (311)
T d1r0pa_ 290 AIFSTFIG 297 (311)
T ss_dssp HHHHTCCS
T ss_pred HHHHhhhh
Confidence 99876533
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7e-32 Score=266.21 Aligned_cols=188 Identities=22% Similarity=0.318 Sum_probs=148.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.|.+|+.++++++||||++++|+|..+ ..++|||||++|++.+.+..+...+++..+..++.|+++||.|||. .
T Consensus 56 ~~~~~Ei~~l~~l~H~nIv~~~g~~~~~-~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~----~ 130 (273)
T d1u46a_ 56 DDFIREVNAMHSLDHRNLIRLYGVVLTP-PMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES----K 130 (273)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSS-SCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEEeec-chheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhh----C
Confidence 4678899999999999999999999764 5689999999999999988766679999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+.. ......|+..|+|||++.+..++.++|||||||++|||+|
T Consensus 131 ~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~ 210 (273)
T d1u46a_ 131 RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY 210 (273)
T ss_dssp TEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred CEeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhC
Confidence 79999999541 0111247789999999999999999999999999999998
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+..++.... .+ .+.+...+..+.+++.+||..||++||||.||.+.|++.
T Consensus 211 G~~Pf~~~~--~~~~~~~i~~~~-~~---------------~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~ 272 (273)
T d1u46a_ 211 GQEPWIGLN--GSQILHKIDKEG-ER---------------LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 272 (273)
T ss_dssp SCCTTTTCC--HHHHHHHHHTSC-CC---------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCcC--HHHHHHHHHhCC-CC---------------CCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 899987532 222223332211 00 011123345678999999999999999999999998875
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-31 Score=270.29 Aligned_cols=188 Identities=19% Similarity=0.324 Sum_probs=150.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.|.+|+.++++++|||||+++++|... ..++++||+.+|+|.+++......+++..+.+|+.|+++||+|||. .
T Consensus 56 ~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~----~ 130 (317)
T d1xkka_ 56 KEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED----R 130 (317)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHH----c
Confidence 4677899999999999999999999764 4578899999999999998877889999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+|+|||+|+.. ......||+.|||||++.++.|+.|+|||||||++|||+| |
T Consensus 131 ~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g 210 (317)
T d1xkka_ 131 RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 210 (317)
T ss_dssp TCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CcccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCC
Confidence 79999999540 0112248999999999999999999999999999999999 7
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+...... +.+..++..+.+++.+||+.||.+||||.||++.|..+.
T Consensus 211 ~~p~~~~~--~~~~~~~i~~~~~~-----------------~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~ 271 (317)
T d1xkka_ 211 SKPYDGIP--ASEISSILEKGERL-----------------PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 271 (317)
T ss_dssp CCTTTTSC--GGGHHHHHHHTCCC-----------------CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHHcCCCC-----------------CCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHH
Confidence 88887643 22333333332211 112233456789999999999999999999999988775
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.5e-31 Score=269.23 Aligned_cols=206 Identities=20% Similarity=0.240 Sum_probs=148.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+.+|+.+++.++|||||+++++|..+...++|||||++|+|.+++.+. ..+++.....++.|+++||+|||+. .
T Consensus 49 ~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~~~-~~l~~~~~~~~~~qil~aL~yLH~~---~ 124 (322)
T d1s9ja_ 49 NQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREK---H 124 (322)
T ss_dssp HHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHh---C
Confidence 35678999999999999999999999999999999999999999999854 4589999999999999999999952 3
Q ss_pred CeeecCCCCc-----------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 527 PIIHCEGEDS-----------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 527 ~i~h~d~~~~-----------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+|+|||+|+. ....+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.
T Consensus 125 ~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~ 204 (322)
T d1s9ja_ 125 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP 204 (322)
T ss_dssp CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSS
T ss_pred CEEccccCHHHeeECCCCCEEEeeCCCccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence 6999999964 12234579999999999999999999999999999999999999997
Q ss_pred cCCCCCccHHHH--HHHhC---C--------------------CCccccccccccchhhhhhhhHHHHHHHHHHHhhccc
Q 040540 584 EMFTGEMSLRRW--VKESL---P--------------------HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCM 638 (669)
Q Consensus 584 ~~~~~~~~l~~~--~~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~ 638 (669)
............ ..... + ....+..+.......+..+ ....+.++.+++.+|++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~dli~~~L~ 283 (322)
T d1s9ja_ 205 PPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLP-SGVFSLEFQDFVNKCLI 283 (322)
T ss_dssp CCCTTHHHHHC------------------------------CCCCHHHHHHHHHTSCCCCCC-BTTBCHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCccCc-cccCCHHHHHHHHHHcC
Confidence 532221100000 00000 0 0000000000000000000 01123568899999999
Q ss_pred CCCCCCCCHHHHHH--HHHHh
Q 040540 639 ESPDKRMHMTDAAA--KLKKI 657 (669)
Q Consensus 639 ~~P~~Rps~~~v~~--~l~~~ 657 (669)
.||.+|||++|+++ .+++.
T Consensus 284 ~dP~~R~ta~e~L~Hpf~~~~ 304 (322)
T d1s9ja_ 284 KNPAERADLKQLMVHAFIKRS 304 (322)
T ss_dssp SSTTTSCCHHHHHTSHHHHHH
T ss_pred CChhHCcCHHHHhhCHhhCcC
Confidence 99999999999987 45543
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.5e-31 Score=266.69 Aligned_cols=192 Identities=25% Similarity=0.409 Sum_probs=151.1
Q ss_pred cccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcC---------------CCccCHHHHHHHH
Q 040540 446 FRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---------------NYFLDILERLNIM 509 (669)
Q Consensus 446 ~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---------------~~~l~~~~~~~i~ 509 (669)
.+.|.+|+.++.++ +||||++++++|...+..++||||+++|+|.++++.. ...+++..+..++
T Consensus 54 ~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 133 (309)
T d1fvra_ 54 HRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFA 133 (309)
T ss_dssp -CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHH
Confidence 34678899999998 7999999999999999999999999999999999753 3568999999999
Q ss_pred HhHHhhhhhhhcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccc
Q 040540 510 IDVGSALEYLRHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDV 565 (669)
Q Consensus 510 ~~i~~~l~~lh~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv 565 (669)
.|+|+|+.|+|. .+|+|||+|+.. ......||..|+|||.+.+..|+.++||
T Consensus 134 ~qia~gl~~lH~----~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDv 209 (309)
T d1fvra_ 134 ADVARGMDYLSQ----KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDV 209 (309)
T ss_dssp HHHHHHHHHHHH----TTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHH
T ss_pred HHHHHHHHhhhc----CCccccccccceEEEcCCCceEEccccccccccccccccceecCCcccchHHhccCCCCcccee
Confidence 999999999995 489999999541 1112358999999999999999999999
Q ss_pred hhhHHHHHHHHhCCC-CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 566 YSYGVLLMETFTRKR-PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 566 ~s~Gvil~el~tg~~-p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|||||++|||++|.. ||... ....+...+..... .+.+...+..+.+++.+||+.||++|
T Consensus 210 wSfGvil~ell~~~~~p~~~~--~~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~li~~cl~~dP~~R 270 (309)
T d1fvra_ 210 WSYGVLLWEIVSLGGTPYCGM--TCAELYEKLPQGYR-----------------LEKPLNCDDEVYDLMRQCWREKPYER 270 (309)
T ss_dssp HHHHHHHHHHHTTSCCTTTTC--CHHHHHHHGGGTCC-----------------CCCCTTBCHHHHHHHHHHTCSSGGGS
T ss_pred ehhHHHHHHHHhcCCCCCCCC--CHHHHHHHHHhcCC-----------------CCCCccCCHHHHHHHHHHcCCChhHC
Confidence 999999999999765 56442 12222222221110 01122334568899999999999999
Q ss_pred CCHHHHHHHHHHhHHH
Q 040540 645 MHMTDAAAKLKKIKVK 660 (669)
Q Consensus 645 ps~~~v~~~l~~~~~~ 660 (669)
|||+||++.|+++.+.
T Consensus 271 Ps~~eil~~L~~i~~~ 286 (309)
T d1fvra_ 271 PSFAQILVSLNRMLEE 286 (309)
T ss_dssp CCHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998754
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.9e-31 Score=263.72 Aligned_cols=190 Identities=24% Similarity=0.389 Sum_probs=150.7
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
..+..|...+.++ +|||||+++++|..+...++|||||++|+|.++++... ..+++.++..++.
T Consensus 63 ~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 142 (299)
T d1fgka_ 63 SDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAY 142 (299)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHH
Confidence 4566777788777 79999999999999999999999999999999997542 3489999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
|+++|++|||. .+|+|||+|+.. ......||+.|+|||.+.++.|+.|+
T Consensus 143 qi~~al~ylH~----~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~ 218 (299)
T d1fgka_ 143 QVARGMEYLAS----KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQS 218 (299)
T ss_dssp HHHHHHHHHHH----TTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHH
T ss_pred HHHHHHHHhhh----CCEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchh
Confidence 99999999995 479999999541 01123588999999999999999999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||+| |+.||.... ...+.+.+........ +...+..+.+++.+||+.||+
T Consensus 219 DiwS~Gvvl~ell~~g~~p~~~~~--~~~~~~~i~~~~~~~~-----------------p~~~~~~l~~li~~cl~~dP~ 279 (299)
T d1fgka_ 219 DVWSFGVLLWEIFTLGGSPYPGVP--VEELFKLLKEGHRMDK-----------------PSNCTNELYMMMRDCWHAVPS 279 (299)
T ss_dssp HHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHHHHTTCCCCC-----------------CSSCCHHHHHHHHHHTCSSGG
T ss_pred hhHHhHHHHHHhccCCCCCCCCCC--HHHHHHHHHcCCCCCC-----------------CccchHHHHHHHHHHccCCHh
Confidence 99999999999998 688876532 2223333332221111 112334678999999999999
Q ss_pred CCCCHHHHHHHHHHhHH
Q 040540 643 KRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~ 659 (669)
+||||.||+++|+++..
T Consensus 280 ~Rps~~eil~~L~~i~a 296 (299)
T d1fgka_ 280 QRPTFKQLVEDLDRIVA 296 (299)
T ss_dssp GSCCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHhh
Confidence 99999999999998854
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.9e-31 Score=261.88 Aligned_cols=189 Identities=23% Similarity=0.361 Sum_probs=147.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.|..|+..+.+++|+|||+++++|.. +..++|||||++|++..++... ...++|.++..|+.|+++|++|||.
T Consensus 57 ~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~---- 131 (285)
T d1fmka3 57 EAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---- 131 (285)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcccCCEeEEEEEEec-CCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhh----
Confidence 457789999999999999999999864 5578999999999999998753 3468999999999999999999995
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|+|||+|+.. ......||+.|+|||++.+..++.|+|||||||++|||+||+
T Consensus 132 ~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~ 211 (285)
T d1fmka3 132 MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG 211 (285)
T ss_dssp TTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred hheecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCC
Confidence 479999999531 111234889999999999999999999999999999999977
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
.|+.... ....+...+........ +..++..+.+++.+||+.||++||+|.+|+++|++..
T Consensus 212 ~p~~~~~-~~~~~~~~i~~~~~~~~-----------------~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~ 272 (285)
T d1fmka3 212 RVPYPGM-VNREVLDQVERGYRMPC-----------------PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 272 (285)
T ss_dssp CCSSTTC-CHHHHHHHHHTTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred CCCCCCC-CHHHHHHHHHhcCCCCC-----------------CcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhh
Confidence 7664422 22223333333221111 1223446789999999999999999999999998764
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=6.4e-31 Score=263.89 Aligned_cols=189 Identities=22% Similarity=0.370 Sum_probs=150.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-----------------------CCccCHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-----------------------NYFLDIL 503 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-----------------------~~~l~~~ 503 (669)
+.|.+|+.+++.++|||+++++++|......+++|||+++|+|.++++.. ...+++.
T Consensus 61 ~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (301)
T d1lufa_ 61 ADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCA 140 (301)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHH
T ss_pred HHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHH
Confidence 46788999999999999999999999999999999999999999999642 1247889
Q ss_pred HHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccC
Q 040540 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 504 ~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
.+..|+.|+++|++|||. .+++|||+|+.. ...+..||+.|||||.+.+
T Consensus 141 ~~~~i~~qi~~gl~ylH~----~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~ 216 (301)
T d1lufa_ 141 EQLCIARQVAAGMAYLSE----RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFY 216 (301)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccc----CCeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHcc
Confidence 999999999999999994 479999999530 1122358899999999999
Q ss_pred CCcCccccchhhHHHHHHHHhCC-CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 GIVSAKCDVYSYGVLLMETFTRK-RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~tg~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..|+.|+|||||||++|||++|. .||... ....+...+....... .+.+++.++.+++.+
T Consensus 217 ~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~--~~~e~~~~v~~~~~~~-----------------~p~~~~~~~~~li~~ 277 (301)
T d1lufa_ 217 NRYTTESDVWAYGVVLWEIFSYGLQPYYGM--AHEEVIYYVRDGNILA-----------------CPENCPLELYNLMRL 277 (301)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--CHHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHH
T ss_pred CCCChhhhhccchhhHHHHHccCCCCCCCC--CHHHHHHHHHcCCCCC-----------------CCccchHHHHHHHHH
Confidence 99999999999999999999996 566543 2222333333221110 122334567899999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhH
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
||+.||++||||.||+++|++++
T Consensus 278 cl~~~P~~RPt~~ev~~~L~~i~ 300 (301)
T d1lufa_ 278 CWSKLPADRPSFCSIHRILQRMC 300 (301)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHTT
T ss_pred HcCCChhHCcCHHHHHHHHHHhc
Confidence 99999999999999999999875
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7e-31 Score=262.53 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=146.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++..+...++|||||++|+|.+++... ..+++.....++.|++.||+|||. .
T Consensus 58 ~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~~-~~l~~~~~~~~~~qi~~al~yLH~----~ 132 (293)
T d1jksa_ 58 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-ESLTEEEATEFLKQILNGVYYLHS----L 132 (293)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCccccchhccc-cccchhHHHHHHHHHHHHHHhhhh----c
Confidence 45678999999999999999999999999999999999999999999754 468999999999999999999995 4
Q ss_pred CeeecCCCCc----------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDS----------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|||+|+. ....+..||+.|||||++.+..++.++|||||||++|||+||
T Consensus 133 ~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g 212 (293)
T d1jksa_ 133 QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 212 (293)
T ss_dssp TEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHS
T ss_pred ceeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcC
Confidence 7999999943 011223589999999999998899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ......+..... . .. ...+...+..+.+++.+||+.||++|||++|+++
T Consensus 213 ~~Pf~~~~~--~~~~~~i~~~~~-~--------~~-----~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 270 (293)
T d1jksa_ 213 ASPFLGDTK--QETLANVSAVNY-E--------FE-----DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 270 (293)
T ss_dssp SCSSCCSSH--HHHHHHHHTTCC-C--------CC-----HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCCCCCH--HHHHHHHHhcCC-C--------CC-----chhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 999975321 111111111100 0 00 0112234556789999999999999999999975
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.96 E-value=1.2e-30 Score=266.12 Aligned_cols=186 Identities=19% Similarity=0.200 Sum_probs=148.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.++..++|||||++++++...+..++|||||++|+|.+++.+....+++.....|+.|++.||+|||. .
T Consensus 68 ~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~----~ 143 (350)
T d1koaa2 68 ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHE----N 143 (350)
T ss_dssp HHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh----c
Confidence 346689999999999999999999999999999999999999999997666679999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|||+|+.. ...+..||+.|||||++.+..|+.++||||+||++|||+||+.
T Consensus 144 ~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~ 223 (350)
T d1koaa2 144 NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLS 223 (350)
T ss_dssp TEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCC
Confidence 89999999541 1112358999999999999999999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... ...+..-+...... .. .. .....+..+.+++.+||+.||++|||++|+++
T Consensus 224 Pf~~~~--~~~~~~~i~~~~~~-~~----~~---------~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 279 (350)
T d1koaa2 224 PFGGEN--DDETLRNVKSCDWN-MD----DS---------AFSGISEDGKDFIRKLLLADPNTRMTIHQALE 279 (350)
T ss_dssp SSCCSS--HHHHHHHHHHTCCC-SC----CG---------GGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred CCCCCC--HHHHHHHHHhCCCC-CC----cc---------cccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 996532 11122212111100 00 00 11223456789999999999999999999976
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=4.4e-31 Score=264.70 Aligned_cols=183 Identities=21% Similarity=0.209 Sum_probs=143.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++..++..++|||||++|++..++.. +..+++.++..|+.|++.||.|||. .
T Consensus 60 ~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~~~~-~~~l~e~~~~~i~~qi~~aL~yLH~----~ 134 (309)
T d1u5ra_ 60 QDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHS----H 134 (309)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 4577899999999999999999999999999999999999999877654 4568999999999999999999995 4
Q ss_pred CeeecCCCCc---------------------ccccccccccccCccccccC---CCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDS---------------------VTQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~---------------------~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|||+|+. .......||+.|||||++.+ ..|+.|+|||||||++|||++|+.||
T Consensus 135 ~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf 214 (309)
T d1u5ra_ 135 NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 214 (309)
T ss_dssp TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEeccCCCcceEEECCCCCEEEeecccccccCCCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCC
Confidence 7999999954 11233469999999999854 45899999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.+.... ..+........+. +. +...+..+.+++.+||+.||++|||+.|+++
T Consensus 215 ~~~~~~-~~~~~i~~~~~~~---------~~--------~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 266 (309)
T d1u5ra_ 215 FNMNAM-SALYHIAQNESPA---------LQ--------SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 266 (309)
T ss_dssp TTSCHH-HHHHHHHHSCCCC---------CS--------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCHH-HHHHHHHhCCCCC---------CC--------CCCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence 753211 1111111111110 00 1122346789999999999999999999975
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-30 Score=261.58 Aligned_cols=191 Identities=20% Similarity=0.309 Sum_probs=151.1
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC-----------------CccCHHHHHHHH
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-----------------YFLDILERLNIM 509 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------------~~l~~~~~~~i~ 509 (669)
.+.+|+.++..+ +|||||+++++|......++|||||++|+|.++++... ..+++..+..|+
T Consensus 72 ~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (311)
T d1t46a_ 72 ALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFS 151 (311)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHH
Confidence 567788899888 69999999999999999999999999999999997532 258899999999
Q ss_pred HhHHhhhhhhhcCCCCCCeeecCCCCc---------------------------ccccccccccccCccccccCCCcCcc
Q 040540 510 IDVGSALEYLRHGHSSAPIIHCEGEDS---------------------------VTQTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 510 ~~i~~~l~~lh~~~~~~~i~h~d~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.|+++|++|||. .+++|||+|+. .......||+.|+|||++.+..++.+
T Consensus 152 ~qi~~gl~~LH~----~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~ 227 (311)
T d1t46a_ 152 YQVAKGMAFLAS----KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE 227 (311)
T ss_dssp HHHHHHHHHHHH----TTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHh----CCeeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCc
Confidence 999999999995 47999999853 01122358999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
+|||||||++|||+|+..|+.........+...+....+... +...+..+.+++.+||+.||.
T Consensus 228 ~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~~~~~l~~Li~~cl~~dP~ 290 (311)
T d1t46a_ 228 SDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLS-----------------PEHAPAEMYDIMKTCWDADPL 290 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGG
T ss_pred ccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCC-----------------cccccHHHHHHHHHHcCCChh
Confidence 999999999999999555543322233334444544432211 112234678999999999999
Q ss_pred CCCCHHHHHHHHHHhHH
Q 040540 643 KRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~ 659 (669)
+||||.+|+++|+++..
T Consensus 291 ~RPs~~~il~~L~~~i~ 307 (311)
T d1t46a_ 291 KRPTFKQIVQLIEKQIS 307 (311)
T ss_dssp GSCCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHhhc
Confidence 99999999999998654
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7e-30 Score=255.97 Aligned_cols=201 Identities=17% Similarity=0.204 Sum_probs=146.5
Q ss_pred hhhhhhccccccccceecccccccc----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC---
Q 040540 451 SECEVLRNVRHRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH--- 523 (669)
Q Consensus 451 ~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--- 523 (669)
.|+..+..++||||++++++|...+ ..++|||||++|+|.+++++. .++|..+..++.++|+|++|+|...
T Consensus 46 ~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~--~l~~~~~~~~~~~ia~gl~~lH~~~~~~ 123 (303)
T d1vjya_ 46 AEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGT 123 (303)
T ss_dssp HHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCST
T ss_pred HHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3555666789999999999997643 468999999999999999863 5899999999999999999999531
Q ss_pred -CCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC------CcCccccchh
Q 040540 524 -SSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG------IVSAKCDVYS 567 (669)
Q Consensus 524 -~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s 567 (669)
..++|+|||+|+.. ......||+.|||||++.+. .++.|+||||
T Consensus 124 ~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S 203 (303)
T d1vjya_ 124 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYA 203 (303)
T ss_dssp TCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHH
T ss_pred ccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhh
Confidence 14689999999530 11223589999999987653 2678999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCC----------ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcc
Q 040540 568 YGVLLMETFTRKRPTDEMFTGE----------MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCC 637 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~ 637 (669)
|||++|||+||..|+....... ............. ..++.+... ....+.+..+.+++.+||
T Consensus 204 ~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~----~~~~~~~~~l~~li~~cl 275 (303)
T d1vjya_ 204 MGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ----KLRPNIPNR----WQSCEALRVMAKIMRECW 275 (303)
T ss_dssp HHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS----CCCCCCCGG----GGGCHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhcc----ccCCCCCcc----cCChHHHHHHHHHHHHHc
Confidence 9999999999998874321111 1111111111111 111222111 123356677889999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 638 MESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 638 ~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
+.||++||||.||++.|+++.+..
T Consensus 276 ~~dp~~Rps~~ei~~~L~~i~~~~ 299 (303)
T d1vjya_ 276 YANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp CSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ccCHhHCcCHHHHHHHHHHHHHhc
Confidence 999999999999999999987653
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=6e-30 Score=259.20 Aligned_cols=249 Identities=31% Similarity=0.464 Sum_probs=223.3
Q ss_pred CCCCEEeCCCCcCcc--cCCcccCCCCCCCEEEccC-CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 75 SFLVSLDISENNFHG--HLPKELGQLRRLRVMSLAY-NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
.+++.|||++|.+.| .+|..++++++|++|+|++ |++.|.+|++|++|++|++|+|++|++++..|..+..+.+|+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 468899999999988 5899999999999999996 8999999999999999999999999999999999999999999
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCC-CEEEccCCCCCCCCCccccCCCCCcEEEcccCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNL-KNLDLADNKLSGLIPPTIFNISTMRILTLESNQ 230 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L-~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 230 (669)
++++.|.+.+.+|..++++++|+++++++|.+.+.+|..+..+.++ +.++++.|++++..|..+.++..+ .++++.+.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~ 208 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 9999999999999999999999999999999999999999988876 889999999999999988887655 69999999
Q ss_pred CccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCC
Q 040540 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSS 310 (669)
Q Consensus 231 l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 310 (669)
..+.+|..+. .+++++.+++++|.+.+.+| .+..+++|+.|++++|++.|.+|..|+++++|++|++++|++++.-
T Consensus 209 ~~~~~~~~~~-~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i-- 284 (313)
T d1ogqa_ 209 LEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-- 284 (313)
T ss_dssp EEECCGGGCC-TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC--
T ss_pred cccccccccc-cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC--
Confidence 9888888776 68899999999999987665 5788899999999999999999999999999999999999988531
Q ss_pred CcccccccccCCCCCCCEEECcCCC
Q 040540 311 ADQWSFLSSLTNCRNLSNLALASNP 335 (669)
Q Consensus 311 ~~~~~~~~~l~~l~~L~~L~l~~n~ 335 (669)
+.+..+++|+.+++++|+
T Consensus 285 -------P~~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 285 -------PQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp -------CCSTTGGGSCGGGTCSSS
T ss_pred -------CCcccCCCCCHHHhCCCc
Confidence 234556677777777776
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.2e-31 Score=262.08 Aligned_cols=181 Identities=18% Similarity=0.191 Sum_probs=143.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.++++++||||+++++++...+..++|||||++|+|.+++... ..+++.....++.|++.||+|||. .
T Consensus 53 ~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~~-~~l~e~~~~~~~~qi~~al~ylH~----~ 127 (288)
T d1uu3a_ 53 PYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI-GSFDETCTRFYTAEIVSALEYLHG----K 127 (288)
T ss_dssp HHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHhhhcc-CCCCHHHHHHHHHHHHHHHHhhcc----c
Confidence 35678999999999999999999999999999999999999999998754 468999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ...+.+||+.|||||++.+..|+.++||||+||++|||+||+
T Consensus 128 ~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~ 207 (288)
T d1uu3a_ 128 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL 207 (288)
T ss_dssp TEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred cEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCC
Confidence 89999999530 012235999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+..-+..... . + +...+..+.+++.+||+.||++|||++|+.+
T Consensus 208 ~Pf~~~~--~~~~~~~i~~~~~-~--------~---------p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~ 260 (288)
T d1uu3a_ 208 PPFRAGN--EYLIFQKIIKLEY-D--------F---------PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 260 (288)
T ss_dssp CSSCCSS--HHHHHHHHHTTCC-C--------C---------CTTCCHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred CCCCCcC--HHHHHHHHHcCCC-C--------C---------CccCCHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence 9997532 1111111111100 0 0 1122345789999999999999999999754
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.96 E-value=2.4e-30 Score=264.05 Aligned_cols=185 Identities=21% Similarity=0.251 Sum_probs=147.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.+++.++||||+++++++..++..++|||||++|+|.+++...+..+++.+...|+.|++.||+|||. .+
T Consensus 72 ~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~----~~ 147 (352)
T d1koba_ 72 TVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE----HS 147 (352)
T ss_dssp HHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45679999999999999999999999999999999999999999988766779999999999999999999995 48
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|||+|+.. ......||+.|||||++.+..|+.++||||+||++|||+||+.|
T Consensus 148 iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~P 227 (352)
T d1koba_ 148 IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSP 227 (352)
T ss_dssp EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCS
T ss_pred eeecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCC
Confidence 9999999531 11123589999999999999999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.+.. ...+...+...... .... .+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 228 f~~~~--~~~~~~~i~~~~~~-~~~~-------------~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~ 282 (352)
T d1koba_ 228 FAGED--DLETLQNVKRCDWE-FDED-------------AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 282 (352)
T ss_dssp SCCSS--HHHHHHHHHHCCCC-CCSS-------------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCCCC--HHHHHHHHHhCCCC-CCcc-------------cccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 97532 11222222221111 0000 01223456789999999999999999999976
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.96 E-value=2.7e-30 Score=256.25 Aligned_cols=191 Identities=18% Similarity=0.275 Sum_probs=143.9
Q ss_pred ccCchhhhhhccccccccceecccccccc----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+.+.+|+.+++.++|||++++++++.... ..++||||+++|+|.+++... ..+++.+...|+.|+++|++|||.
T Consensus 52 ~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~-~~l~~~~~~~i~~qi~~al~~lH~- 129 (277)
T d1o6ya_ 52 LRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALNFSHQ- 129 (277)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhccc-CCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 45778999999999999999999886543 368999999999999998754 468999999999999999999995
Q ss_pred CCCCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHH
Q 040540 523 HSSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLME 574 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~e 574 (669)
.+|+|||+|+.. .....+||+.|||||++.+..|+.++||||+||++||
T Consensus 130 ---~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilye 206 (277)
T d1o6ya_ 130 ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYE 206 (277)
T ss_dssp ---TTEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ---CCccCccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHH
Confidence 489999999541 1122359999999999998889999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-CHHHHHHH
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-HMTDAAAK 653 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-s~~~v~~~ 653 (669)
|+||+.||...... ..+...++.... .... ...+.+..+.+++.+|++.||++|| |+++++..
T Consensus 207 lltG~~Pf~~~~~~-~~~~~~~~~~~~--~~~~-------------~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~ 270 (277)
T d1o6ya_ 207 VLTGEPPFTGDSPV-SVAYQHVREDPI--PPSA-------------RHEGLSADLDAVVLKALAKNPENRYQTAAEMRAD 270 (277)
T ss_dssp HHHSSCSCCCSSHH-HHHHHHHHCCCC--CGGG-------------TSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHH
T ss_pred HHhCCCCCCCcCHH-HHHHHHHhcCCC--CCch-------------hccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHH
Confidence 99999999753211 111111111110 0000 1123345678999999999999999 89999999
Q ss_pred HHHhH
Q 040540 654 LKKIK 658 (669)
Q Consensus 654 l~~~~ 658 (669)
|.++.
T Consensus 271 l~r~~ 275 (277)
T d1o6ya_ 271 LVRVH 275 (277)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88875
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.1e-30 Score=259.03 Aligned_cols=192 Identities=23% Similarity=0.381 Sum_probs=146.0
Q ss_pred ccCchhhhhhccc-cccccceeccccccc-cccceeeccCCCCChHHhhhcC---------------CCccCHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNP-DFKALVLEFMPNGSLEKWLYSH---------------NYFLDILERLNIM 509 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~---------------~~~l~~~~~~~i~ 509 (669)
+.+..|...+.++ +|+|++.+++++..+ ...++|||||++|+|.++++.. ...+++.++..|+
T Consensus 61 ~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 140 (299)
T d1ywna1 61 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 140 (299)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHH
Confidence 3455566666665 689999999987664 4578999999999999999753 2348899999999
Q ss_pred HhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCcc
Q 040540 510 IDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 510 ~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.|+++|++|||. .+|+|||+|+.. ......||+.|||||++.+..++.+
T Consensus 141 ~qi~~gl~ylH~----~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~ 216 (299)
T d1ywna1 141 FQVAKGMEFLAS----RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQ 216 (299)
T ss_dssp HHHHHHHHHHHH----TTCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHh----CCCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcc
Confidence 999999999995 479999999530 1122358999999999999999999
Q ss_pred ccchhhHHHHHHHHhCC-CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 563 CDVYSYGVLLMETFTRK-RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
+|||||||++|||+||. .||.... ....+...+........ +...+.++.+++.+||+.||
T Consensus 217 sDiwS~Gvil~ellt~~~~p~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~cl~~dP 278 (299)
T d1ywna1 217 SDVWSFGVLLWEIFSLGASPYPGVK-IDEEFCRRLKEGTRMRA-----------------PDYTTPEMYQTMLDCWHGEP 278 (299)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSTTCC-CSHHHHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSG
T ss_pred cceeehHHHHHHHHhCCCCCCCCCC-HHHHHHHHHhcCCCCCC-----------------CccCCHHHHHHHHHHcCCCh
Confidence 99999999999999975 5665432 22223333333321111 12234467899999999999
Q ss_pred CCCCCHHHHHHHHHHhHHH
Q 040540 642 DKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 642 ~~Rps~~~v~~~l~~~~~~ 660 (669)
++||||.||++.|+++.+.
T Consensus 279 ~~Rpt~~eil~~L~~ilq~ 297 (299)
T d1ywna1 279 SQRPTFSELVEHLGNLLQA 297 (299)
T ss_dssp GGSCCHHHHHHHHHHHHHH
T ss_pred hHCcCHHHHHHHHHHHHhC
Confidence 9999999999999998653
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.3e-30 Score=258.65 Aligned_cols=188 Identities=19% Similarity=0.226 Sum_probs=141.7
Q ss_pred Cchhhhhhccc-cccccceecccccc----ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+.+|+.++.++ +|||++++++++.. ....++|||||++|+|.+++.+.+ ..+++.+...|+.|++.|++|||.
T Consensus 51 ~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~- 129 (335)
T d2ozaa1 51 ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS- 129 (335)
T ss_dssp HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHH-
Confidence 45688876554 89999999998754 466799999999999999998643 468999999999999999999995
Q ss_pred CCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 523 HSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.+|+|||+|+.. ......||+.|||||++.+..|+.++||||+||++|||
T Consensus 130 ---~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~l 206 (335)
T d2ozaa1 130 ---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL 206 (335)
T ss_dssp ---TTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHH
T ss_pred ---cCCccccccccccccccccccccccccccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHH
Confidence 489999999530 11223599999999999998999999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+||+.||.+..... ....+....... . .... .+.+...+..+.+++.+|++.||++|||+.|+++
T Consensus 207 ltg~~Pf~~~~~~~--~~~~~~~~i~~~--~---~~~~-----~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 271 (335)
T d2ozaa1 207 LCGYPPFYSNHGLA--ISPGMKTRIRMG--Q---YEFP-----NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 271 (335)
T ss_dssp TTSSCSCEETTCC----------CCCSC--S---SSCC-----TTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hhCCCCCCCCCHHH--HHHHHHHHHhcC--C---CCCC-----CcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 99999996532211 111111110000 0 0000 1123455677899999999999999999999976
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=9.5e-30 Score=255.82 Aligned_cols=196 Identities=19% Similarity=0.329 Sum_probs=152.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC---------CCccCHHHHHHHHHhHHhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---------NYFLDILERLNIMIDVGSALE 517 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---------~~~l~~~~~~~i~~~i~~~l~ 517 (669)
..|.+|+.++.+++|||++++++.|......++|||||++|+|.+++... ...+++..+.+|+.++++||.
T Consensus 68 ~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~ 147 (308)
T d1p4oa_ 68 IEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMA 147 (308)
T ss_dssp HHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999989999999999999999998642 134688999999999999999
Q ss_pred hhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHH
Q 040540 518 YLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGV 570 (669)
Q Consensus 518 ~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv 570 (669)
|||. .+|+|||+|+.. ......||+.|+|||.+.+..++.++|||||||
T Consensus 148 ~LH~----~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~ 223 (308)
T d1p4oa_ 148 YLNA----NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGV 223 (308)
T ss_dssp HHHH----TTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred HHhh----CCeeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHH
Confidence 9995 479999999530 011225899999999999999999999999999
Q ss_pred HHHHHHhCC-CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 571 LLMETFTRK-RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 571 il~el~tg~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
++|||+||+ .||.... .......+.... . .+.+..++..+.+++.+||+.||++||||++
T Consensus 224 il~El~t~~~~p~~~~~--~~~~~~~i~~~~---~--------------~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~ 284 (308)
T d1p4oa_ 224 VLWEIATLAEQPYQGLS--NEQVLRFVMEGG---L--------------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLE 284 (308)
T ss_dssp HHHHHHHTSCCTTTTSC--HHHHHHHHHTTC---C--------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred HHHHHHhCCCCCCCCCC--HHHHHHHHHhCC---C--------------CCCcccchHHHHHHHHHHcCCChhHCcCHHH
Confidence 999999995 6665421 111222221111 0 0012233456889999999999999999999
Q ss_pred HHHHHHHhHHHhhhhh
Q 040540 650 AAAKLKKIKVKFLDDV 665 (669)
Q Consensus 650 v~~~l~~~~~~~~~~~ 665 (669)
|+++|++..+....++
T Consensus 285 il~~L~~~~~~~~~~~ 300 (308)
T d1p4oa_ 285 IISSIKEEMEPGFREV 300 (308)
T ss_dssp HHHHHGGGSCTTHHHH
T ss_pred HHHHHHHhcCCCCcCC
Confidence 9999998766554443
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.8e-29 Score=254.78 Aligned_cols=185 Identities=19% Similarity=0.244 Sum_probs=147.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.++..++||||+++++++...+..++|||||++|+|.+++...+..+++.+...|+.|+++|++|||. .+
T Consensus 47 ~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~----~~ 122 (321)
T d1tkia_ 47 LVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHS----HN 122 (321)
T ss_dssp HHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----cC
Confidence 35679999999999999999999999999999999999999999998766679999999999999999999995 48
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|||+|+.. ......||+.|+|||...+..|+.++||||+||++|||++|+.|
T Consensus 123 iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~P 202 (321)
T d1tkia_ 123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINP 202 (321)
T ss_dssp EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCT
T ss_pred CCcccccccceeecCCCceEEEEcccchhhccccCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCC
Confidence 9999999531 01123489999999999998999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..... ..+..-+.... ..... ..+.+.+..+.+++.+|++.||.+|||+.|+++
T Consensus 203 f~~~~~--~~~~~~i~~~~-~~~~~-------------~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~ 257 (321)
T d1tkia_ 203 FLAETN--QQIIENIMNAE-YTFDE-------------EAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp TCCSSH--HHHHHHHHHTC-CCCCH-------------HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCCH--HHHHHHHHhCC-CCCCh-------------hhccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 975321 11111111110 00000 011233456789999999999999999999986
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.7e-29 Score=253.36 Aligned_cols=181 Identities=19% Similarity=0.167 Sum_probs=144.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.+++.++||||+++++++......++|||||++|+|.+++... ..+++.....++.|++.||+|||. .
T Consensus 50 ~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~~-~~~~e~~~~~~~~qil~al~ylH~----~ 124 (337)
T d1o6la_ 50 AHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHS----R 124 (337)
T ss_dssp HHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeeeccccccccceeccCCCchhhhhhcc-cCCcHHHHHHHHHHHhhhhhhhhh----c
Confidence 34567999999999999999999999999999999999999999999864 457888888999999999999995 4
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+. ......+||+.|||||++.+..|+.++||||+||++|||+||+.|
T Consensus 125 ~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~p 204 (337)
T d1o6la_ 125 DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204 (337)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCS
T ss_pred CccccccCHHHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCC
Confidence 8999999953 112234699999999999999999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
|..... ..+.......... . +...+..+.+++.+|++.||.+||+ ++|+++
T Consensus 205 f~~~~~--~~~~~~i~~~~~~-~-----------------p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~ 260 (337)
T d1o6la_ 205 FYNQDH--ERLFELILMEEIR-F-----------------PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp SCCSSH--HHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred CCCcCH--HHHHHHHhcCCCC-C-----------------CccCCHHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence 976321 1122221111100 0 1123346789999999999999995 677654
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.8e-29 Score=250.82 Aligned_cols=181 Identities=19% Similarity=0.181 Sum_probs=144.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.+++.++||||+++++++..++..++|||||++|++.+++... ..+++.....++.|++.|++|||. .
T Consensus 49 ~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~----~ 123 (316)
T d1fota_ 49 EHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLHS----K 123 (316)
T ss_dssp HHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecCCcccccccccc-ccccccHHHHHHHHHHHhhhhhcc----C
Confidence 34667999999999999999999999999999999999999999999754 457888888899999999999994 5
Q ss_pred CeeecCCCCc----------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 527 PIIHCEGEDS----------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 527 ~i~h~d~~~~----------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
+|+|||+|+. ....+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+
T Consensus 124 ~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~ 203 (316)
T d1fota_ 124 DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYD 203 (316)
T ss_dssp TEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC
T ss_pred cEEccccCchheeEcCCCCEEEecCccceEeccccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCC
Confidence 8999999954 112334699999999999998999999999999999999999999975
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
.. ...+..-+..... .. +...+..+.+++.+|++.||.+|| |++|+++
T Consensus 204 ~~--~~~~~~~i~~~~~-~~-----------------p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~ 256 (316)
T d1fota_ 204 SN--TMKTYEKILNAEL-RF-----------------PPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 256 (316)
T ss_dssp SS--HHHHHHHHHHCCC-CC-----------------CTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred cC--HHHHHHHHHcCCC-CC-----------------CCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence 32 1111111111100 00 112234578999999999999996 8888875
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.4e-28 Score=252.38 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=138.5
Q ss_pred hhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeec
Q 040540 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC 531 (669)
Q Consensus 452 e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~ 531 (669)
++..++.++|||||++++++...+..++|||||++|+|.+++.+. ..+++.....|+.+++.||+|||. .+|+||
T Consensus 57 ~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~aL~ylH~----~~iiHr 131 (364)
T d1omwa3 57 MLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH-GVFSEADMRFYAAEIILGLEHMHN----RFVVYR 131 (364)
T ss_dssp HHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHH----TTEECC
T ss_pred HHHHHhcCCCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHH----CCccce
Confidence 466677788999999999999999999999999999999999754 457888999999999999999995 489999
Q ss_pred CCCCc-----------------------ccccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCCCcCCC
Q 040540 532 EGEDS-----------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFT 587 (669)
Q Consensus 532 d~~~~-----------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~ 587 (669)
|+|+. .......||+.|||||++.. ..|+.++||||+||++|||+||+.||.....
T Consensus 132 DlKP~NILl~~~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~ 211 (364)
T d1omwa3 132 DLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT 211 (364)
T ss_dssp CCSGGGEEECSSSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCS
T ss_pred eeccceeEEcCCCcEEEeeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCH
Confidence 99954 11223469999999999865 5689999999999999999999999976432
Q ss_pred CCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 588 GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 588 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
.. .....+....... . .+...+..+.+++.+||+.||.+||| ++|+++
T Consensus 212 ~~--~~~~~~~~~~~~~------~---------~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~ 264 (364)
T d1omwa3 212 KD--KHEIDRMTLTMAV------E---------LPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 264 (364)
T ss_dssp SC--HHHHHHHSSSCCC------C---------CCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred HH--HHHHHHhcccCCC------C---------CCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence 22 2221221111100 0 01122345789999999999999999 567654
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.95 E-value=1.2e-28 Score=243.04 Aligned_cols=184 Identities=22% Similarity=0.246 Sum_probs=143.7
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+.+|+.++.+++ |||++++++++..++..++|||||++|+|.++++.. ..+++.+...++.|+++||+|||. .
T Consensus 55 ~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~-~~l~e~~~~~~~~qi~~al~~lH~----~ 129 (277)
T d1phka_ 55 ATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK-VTLSEKETRKIMRALLEVICALHK----L 129 (277)
T ss_dssp HHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeecccCcceEEEEEcCCCchHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----c
Confidence 4667999999997 999999999999999999999999999999999854 468999999999999999999995 4
Q ss_pred CeeecCCCCc------------------------ccccccccccccCccccccC------CCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSE------GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~s~Gvil~el~ 576 (669)
+|+|||+|+. .......||+.|+|||++.+ ..++.++||||+||++|||+
T Consensus 130 ~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml 209 (277)
T d1phka_ 130 NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLL 209 (277)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHH
T ss_pred CCcccccccceEEEcCCCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhc
Confidence 7999999953 01223358999999998752 34788999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||+.||.+... ......+...... .. .+.....+..+.+++.+||+.||++|||+.||++
T Consensus 210 ~g~~Pf~~~~~--~~~~~~i~~~~~~-~~-------------~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~ 269 (277)
T d1phka_ 210 AGSPPFWHRKQ--MLMLRMIMSGNYQ-FG-------------SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 269 (277)
T ss_dssp HSSCSSCCSSH--HHHHHHHHHTCCC-CC-------------TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cCCCCCCCCCH--HHHHHHHHhCCCC-CC-------------CcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 99999976321 1121111111110 00 0012234456889999999999999999999864
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.3e-29 Score=251.66 Aligned_cols=178 Identities=21% Similarity=0.216 Sum_probs=139.5
Q ss_pred Cchhhhhhc-cccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLR-NVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~-~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|...+. .++||||+++++++..++..++|||||++|+|.++++.. ..+++.+...++.|++.||+|||. .+
T Consensus 49 ~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~~-~~~~e~~~~~~~~qi~~al~ylH~----~~ 123 (320)
T d1xjda_ 49 TMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC-HKFDLSRATFYAAEIILGLQFLHS----KG 123 (320)
T ss_dssp HHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 344555554 689999999999999999999999999999999999753 458888999999999999999995 47
Q ss_pred eeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+. .......||+.|+|||++.+..|+.++||||+||++|||+||+.||
T Consensus 124 iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF 203 (320)
T d1xjda_ 124 IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF 203 (320)
T ss_dssp CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred eeeccCcccceeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCC
Confidence 999999953 1122335999999999999999999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH-HHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT-DAA 651 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~-~v~ 651 (669)
.+.. ...+..-+....+. . +...+..+.+++.+||+.||++||++. |++
T Consensus 204 ~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~ 253 (320)
T d1xjda_ 204 HGQD--EEELFHSIRMDNPF-Y-----------------PRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 253 (320)
T ss_dssp CCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred CCCC--HHHHHHHHHcCCCC-C-----------------CccCCHHHHHHHHHhcccCCCCCcCHHHHHH
Confidence 7532 11222222211111 0 112234578999999999999999985 664
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.7e-28 Score=246.24 Aligned_cols=198 Identities=19% Similarity=0.187 Sum_probs=142.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++...+..++||||++++++..+.. .+..+++.....++.|++.||+|||. .
T Consensus 45 ~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~-~~~~l~~~~~~~~~~qil~aL~~lH~----~ 119 (299)
T d1ua2a_ 45 RTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQ----H 119 (299)
T ss_dssp THHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhhh-cccCCCHHHHHHHHHHHHHHHHHhhc----c
Confidence 346689999999999999999999999999999999999877766654 45568888899999999999999995 4
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|||+|+. ......+||+.|||||++.. ..|+.++|||||||++|||+||+.
T Consensus 120 ~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~ 199 (299)
T d1ua2a_ 120 WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVP 199 (299)
T ss_dssp TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred ceecccCCcceEEecCCCccccccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcC
Confidence 7999999953 01123469999999998865 458999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhC--CC--Cccccc-------cccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESL--PH--RLSEVV-------DTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~--~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
||.... .......+.+.. +. ...... ........ ..........++.+++.+|++.||++|||++|
T Consensus 200 pf~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e 276 (299)
T d1ua2a_ 200 FLPGDS--DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIP-LHHIFSAAGDDLLDLIQGLFLFNPCARITATQ 276 (299)
T ss_dssp SSCCSS--HHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCC-HHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHH
T ss_pred CCCCCC--HHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCC-hHHhcccCCHHHHHHHHHHccCChhhCcCHHH
Confidence 986532 111111111111 00 000000 00000000 00001123456889999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 277 ~L~ 279 (299)
T d1ua2a_ 277 ALK 279 (299)
T ss_dssp HHT
T ss_pred HhC
Confidence 975
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=3.1e-28 Score=248.30 Aligned_cols=180 Identities=17% Similarity=0.087 Sum_probs=144.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.+++.++||||+++++++......++||||+.+|++.+++.+. ..+++.....|+.|+++||.|||. .+
T Consensus 87 ~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~~~-~~l~e~~~~~i~~qi~~aL~yLH~----~~ 161 (350)
T d1rdqe_ 87 HTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHS----LD 161 (350)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHcCCCcEeecccccccccccccccccccccchhhhHhhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4567999999999999999999999999999999999999999999754 458999999999999999999995 47
Q ss_pred eeecCCCCc----------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDS----------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~----------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
|+|||+|+. ....+..||+.|||||++.+..|+.++||||+||++|||+||+.||...
T Consensus 162 iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~ 241 (350)
T d1rdqe_ 162 LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD 241 (350)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred EecCcCCHHHcccCCCCCEEeeeceeeeecccccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc
Confidence 999999954 1122346999999999999999999999999999999999999999753
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
. ...+...+....+. .+...+.++.+++.+|++.||.+|+ |++|+++
T Consensus 242 ~--~~~~~~~i~~~~~~------------------~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~ 293 (350)
T d1rdqe_ 242 Q--PIQIYEKIVSGKVR------------------FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp S--HHHHHHHHHHCCCC------------------CCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred C--HHHHHHHHhcCCCC------------------CCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence 2 11222222111111 0112334678999999999999994 8888875
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=1.2e-24 Score=226.56 Aligned_cols=340 Identities=26% Similarity=0.354 Sum_probs=237.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|+++++++... ..+..+++|++|||++|++++.. .++++++|++|++++|++.+.. .++++++|+.|++
T Consensus 44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~ 117 (384)
T d2omza2 44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL 117 (384)
T ss_dssp TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccccc
Confidence 3578889988888642 35778888999999999888643 3888889999999988887532 3788888899988
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.+++..+ ......+..+....|.+....+.................. ...+...+.........|...
T Consensus 118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-- 188 (384)
T d2omza2 118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLDISSNKVS-- 188 (384)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEECCSSCCC--
T ss_pred cccccccccc--ccccccccccccccccccccccccccccccccccccccch-----hhhhccccccccccccccccc--
Confidence 8888875433 3445566677766666554333322222222222221111 122344445555555555543
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
....+..+++++.+++++|.+++..|.. ..++|++|++++|.+.. ...+..+++|+.+++++|.+.+..+ +..
T Consensus 189 ~~~~~~~l~~~~~l~l~~n~i~~~~~~~---~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 261 (384)
T d2omza2 189 DISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSG 261 (384)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGGGG---GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cccccccccccceeeccCCccCCCCccc---ccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--ccc
Confidence 3455667778888888888877544422 35678888888887764 2356777888888888888775433 677
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 370 (669)
+++|+.|+++.|++++. ..+..++.++.+.+..|.+.+... ...+..++.+++++|.+++..
T Consensus 262 ~~~L~~L~l~~~~l~~~----------~~~~~~~~l~~l~~~~n~l~~~~~------~~~~~~l~~L~ls~n~l~~l~-- 323 (384)
T d2omza2 262 LTKLTELKLGANQISNI----------SPLAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDIS-- 323 (384)
T ss_dssp CTTCSEEECCSSCCCCC----------GGGTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCG--
T ss_pred cccCCEeeccCcccCCC----------Cccccccccccccccccccccccc------cchhcccCeEECCCCCCCCCc--
Confidence 78888888888877654 235567778888888888775321 123567888888888888653
Q ss_pred cccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCC
Q 040540 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSN 434 (669)
Q Consensus 371 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N 434 (669)
.+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++++..| ++.+++|+.|++++|
T Consensus 324 ~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 324 PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 37788999999999999875 33 58889999999999999986544 788999999999987
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9.2e-28 Score=241.83 Aligned_cols=199 Identities=20% Similarity=0.196 Sum_probs=139.5
Q ss_pred cCchhhhhhccc---cccccceecccccc-----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhh
Q 040540 448 SFDSECEVLRNV---RHRNLIKIISSCSN-----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 448 ~~~~e~~~l~~l---~h~niv~l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
.+.+|+.+++.+ +|||+++++++|.. ....+++|||++++.+..........+++.....|+.|++.||+||
T Consensus 53 ~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL 132 (305)
T d1blxa_ 53 STIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFL 132 (305)
T ss_dssp THHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344677766655 79999999998853 3467899999998877666655566789999999999999999999
Q ss_pred hcCCCCCCeeecCCCCc------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
|. .+|+|||+|+. .......||+.|||||++.+..|+.++||||+||++|||
T Consensus 133 H~----~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~el 208 (305)
T d1blxa_ 133 HS----HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEM 208 (305)
T ss_dssp HH----TTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred Hh----CCEEecCCCccEEEEcCCCCeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHH
Confidence 95 47999999954 112234699999999999999999999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhC-CCC--cc------ccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESL-PHR--LS------EVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~-~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
+||+.||..... ...+........ +.. +. .......... +...........+.+++.+|++.||++|||
T Consensus 209 l~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~dli~~mL~~dP~~R~s 286 (305)
T d1blxa_ 209 FRRKPLFRGSSD-VDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQ-PIEKFVTDIDELGKDLLLKCLTFNPAKRIS 286 (305)
T ss_dssp HHSSCSCCCSSH-HHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCC-CGGGTCCSCCHHHHHHHHHHSCSSTTTSCC
T ss_pred HHCCCCCCCCCH-HHHHHHHHHhhCCCchhcccccccchhhhhcccccc-chhhccccCCHHHHHHHHHHCcCChhHCcC
Confidence 999999975321 111222111111 100 00 0000000000 000112233456789999999999999999
Q ss_pred HHHHHH
Q 040540 647 MTDAAA 652 (669)
Q Consensus 647 ~~~v~~ 652 (669)
+.|+++
T Consensus 287 a~e~L~ 292 (305)
T d1blxa_ 287 AYSALS 292 (305)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999865
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.9e-28 Score=240.52 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=138.1
Q ss_pred cCchhhhhhcccc--ccccceeccccccccccceeeccCCC-CChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVR--HRNLIKIISSCSNPDFKALVLEFMPN-GSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ey~~~-g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|+.++++++ |||++++++++..++..++||||+.+ +++.+++.. ...+++.+...++.|+++||+|||.
T Consensus 53 ~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~~~~~-~~~l~e~~~~~~~~qi~~al~~lH~--- 128 (273)
T d1xwsa_ 53 RVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITE-RGALQEELARSFFWQVLEAVRHCHN--- 128 (273)
T ss_dssp EEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEEEEeccCcchHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 4667999998886 89999999999999999999999975 688888875 3468999999999999999999995
Q ss_pred CCCeeecCCCCc------------------------ccccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCC
Q 040540 525 SAPIIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 525 ~~~i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|+|||+|+. ....+..||+.|||||++.+..+ +.++||||+||++|||+||+
T Consensus 129 -~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~ 207 (273)
T d1xwsa_ 129 -CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGD 207 (273)
T ss_dssp -TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSS
T ss_pred -CCCccccCcccceEEecCCCeEEECccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCC
Confidence 48999999953 11233469999999999887654 67899999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+... ...+ ..+.++.+++.+||+.||++|||++|+++
T Consensus 208 ~Pf~~~~-------~i~~~~~------~~~~-------------~~s~~~~~li~~~L~~dp~~R~s~~eil~ 254 (273)
T d1xwsa_ 208 IPFEHDE-------EIIRGQV------FFRQ-------------RVSSECQHLIRWCLALRPSDRPTFEEIQN 254 (273)
T ss_dssp CSCCSHH-------HHHHCCC------CCSS-------------CCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCch-------HHhhccc------CCCC-------------CCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence 9986421 0111100 0111 12345789999999999999999999976
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8.9e-28 Score=240.53 Aligned_cols=200 Identities=19% Similarity=0.145 Sum_probs=141.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++||||+++++++..+...++||||+.++.+..........+++.....++.|++.||+|||. .
T Consensus 46 ~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~----~ 121 (298)
T d1gz8a_ 46 STAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS----H 121 (298)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhc----C
Confidence 456789999999999999999999999999999999998544443334445679999999999999999999995 4
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCC-cCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|||+|+. .......||+.|+|||...... ++.++||||+||++|||++|+.
T Consensus 122 ~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~ 201 (298)
T d1gz8a_ 122 RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA 201 (298)
T ss_dssp TCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CEEccccCchheeecccCcceeccCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCC
Confidence 7999999954 1122336999999999876654 6889999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHh-CCCC-c-cccc-c-------ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 581 PTDEMFTGEMSLRRWVKES-LPHR-L-SEVV-D-------TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~-~~~~-~-~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
||...... ..+....+.. .+.. . .... . +..... ............+.+++.+|++.||++|||+.|
T Consensus 202 Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~e 279 (298)
T d1gz8a_ 202 LFPGDSEI-DQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQ-DFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKA 279 (298)
T ss_dssp SCCCSSHH-HHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCC-CHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred CCCCCCHH-HHHHHHHHhcCCCchhhcccccccccccccccccccc-chhhhccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence 99753211 1111111111 1110 0 0000 0 000000 000011123457889999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 280 ll~ 282 (298)
T d1gz8a_ 280 ALA 282 (298)
T ss_dssp HHT
T ss_pred HhC
Confidence 976
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=2.3e-26 Score=230.55 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=143.3
Q ss_pred cCchhhhhhccccccccceecccc-ccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSC-SNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..+++.++|++++..+..| ......++||||+. |++.+.+......+++.....++.|+++||+|||. .
T Consensus 48 ~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~----~ 122 (299)
T d1ckia_ 48 QLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHS----K 122 (299)
T ss_dssp CHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-CchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHH----C
Confidence 466799999999888777666555 55667789999995 67777776666679999999999999999999995 4
Q ss_pred CeeecCCCCcc-----------------------------------cccccccccccCccccccCCCcCccccchhhHHH
Q 040540 527 PIIHCEGEDSV-----------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 527 ~i~h~d~~~~~-----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
+|+|||+|+.. ......||+.|||||...+..++.++|||||||+
T Consensus 123 ~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~ 202 (299)
T d1ckia_ 123 NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYV 202 (299)
T ss_dssp TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHH
T ss_pred CeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHH
Confidence 79999999541 0112359999999999999889999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCcc--HHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 572 LMETFTRKRPTDEMFTGEMS--LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
+|||+||+.||......... ...+........ . ......++..+.+++.+||+.+|++||++++
T Consensus 203 l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~ 268 (299)
T d1ckia_ 203 LMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP--------I------EVLCKGYPSEFATYLNFCRSLRFDDKPDYSY 268 (299)
T ss_dssp HHHHHHSSCTTCCCC-------HHHHHHHHHHSC--------H------HHHTTTSCHHHHHHHHHHHHSCTTCCCCHHH
T ss_pred HHHHHhCCCcccccchHHHHHHHHHhhcccCCCC--------h------hHhccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence 99999999999764322211 111111100000 0 0001234466889999999999999999999
Q ss_pred HHHHHHHhHH
Q 040540 650 AAAKLKKIKV 659 (669)
Q Consensus 650 v~~~l~~~~~ 659 (669)
+.+.|+.+..
T Consensus 269 i~~~l~~~~~ 278 (299)
T d1ckia_ 269 LRQLFRNLFH 278 (299)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988743
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.92 E-value=1.9e-26 Score=229.72 Aligned_cols=200 Identities=17% Similarity=0.174 Sum_probs=141.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||++++++++..++..++++||+.++.+..+.. ....+++.....|+.|+++||+|||. .
T Consensus 45 ~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~----~ 119 (286)
T d1ob3a_ 45 STTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHD----R 119 (286)
T ss_dssp HHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHHh-hcCCcchhhhHHHHHHHHHHHHHhcc----C
Confidence 456789999999999999999999999999999999998776666655 45679999999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|||+|+.. ......|++.|+|||.+.+ ..++.++||||+||++|||++|+.
T Consensus 120 ~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~ 199 (286)
T d1ob3a_ 120 RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTP 199 (286)
T ss_dssp TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred cEEecCCCCceeeEcCCCCEEecccccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCC
Confidence 79999999541 1122358999999998876 457899999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhC-CC--Cccccc-----ccccc--chhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESL-PH--RLSEVV-----DTNLV--REEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~-~~--~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
||....... .+....+... +. ...... +.... ...+...........+.+++.+|++.||++|||++|+
T Consensus 200 pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~el 278 (286)
T d1ob3a_ 200 LFPGVSEAD-QLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278 (286)
T ss_dssp SCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred CCCCCCHHH-HHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 997632211 1111111111 10 000000 00000 0000001112334567899999999999999999998
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
++
T Consensus 279 l~ 280 (286)
T d1ob3a_ 279 LE 280 (286)
T ss_dssp HT
T ss_pred hc
Confidence 74
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.2e-26 Score=232.37 Aligned_cols=198 Identities=17% Similarity=0.144 Sum_probs=136.2
Q ss_pred Cchhhhhhccccccccceecccccc------ccccceeeccCCCCChHHhhh--cCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLY--SHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~--~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
..+|+.+++.++|+|++++++++.. ..+.++|||||++|.+..+.. .....+++.++..|+.|+++||+|||
T Consensus 60 ~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH 139 (350)
T d1q5ka_ 60 KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 139 (350)
T ss_dssp CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999988743 234689999998654333322 24557899999999999999999999
Q ss_pred cCCCCCCeeecCCCCc-------------------------ccccccccccccCccccccC-CCcCccccchhhHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLME 574 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~e 574 (669)
. .+|+|||+|+. ....+.+||+.|+|||.+.+ ..|+.++||||+||++||
T Consensus 140 ~----~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~e 215 (350)
T d1q5ka_ 140 S----FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAE 215 (350)
T ss_dssp T----TTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHH
T ss_pred h----cCCcccCCCcceEEEecCCCceeEecccchhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEe
Confidence 4 58999999953 11223468999999998765 568999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHH-----------HhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVK-----------ESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
|++|+.||..... ...+...++ ...+.. .+..-+.................++.+++.+|+..||++
T Consensus 216 l~~g~~pf~~~~~-~~~l~~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~ 293 (350)
T d1q5ka_ 216 LLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQIREMNPNY-TEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTA 293 (350)
T ss_dssp HHHTSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCC----CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGG
T ss_pred hhhCCCCCCCCCH-HHHHHHHHHHhCCChHHhhhhhccch-hhccccccccCchhhhcccCCCHHHHHHHHHHccCChhH
Confidence 9999999965321 111111111 111110 000000000000000011233456789999999999999
Q ss_pred CCCHHHHHH
Q 040540 644 RMHMTDAAA 652 (669)
Q Consensus 644 Rps~~~v~~ 652 (669)
|||+.|+++
T Consensus 294 R~ta~e~L~ 302 (350)
T d1q5ka_ 294 RLTPLEACA 302 (350)
T ss_dssp SCCHHHHHT
T ss_pred CcCHHHHhc
Confidence 999999985
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.92 E-value=1.9e-25 Score=222.52 Aligned_cols=195 Identities=10% Similarity=0.032 Sum_probs=148.6
Q ss_pred cCchhhhhhccccc-cccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRH-RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|...+..+.| ++++.+++++......++||||+ +|+|.+++...+..+++.+...|+.+++.|++|||. .
T Consensus 46 ~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~----~ 120 (293)
T d1csna_ 46 QLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE----K 120 (293)
T ss_dssp CHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH----C
Confidence 45667888888865 89989998888888889999999 589999998777779999999999999999999994 5
Q ss_pred CeeecCCCCcc-------------------------------------cccccccccccCccccccCCCcCccccchhhH
Q 040540 527 PIIHCEGEDSV-------------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G 569 (669)
+|+|||+|+.. .....+||+.|||||++.+..++.++||||||
T Consensus 121 giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG 200 (293)
T d1csna_ 121 SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALG 200 (293)
T ss_dssp TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHH
T ss_pred CceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhh
Confidence 89999999430 01123599999999999998899999999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCcc-HHHHHHHh-CCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMS-LRRWVKES-LPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~-l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|++|||+||+.||......... ....+... ......+ .....+.++.+++..|+..+|++||++
T Consensus 201 ~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~--------------l~~~~p~~l~~ii~~~~~~~~~~rP~y 266 (293)
T d1csna_ 201 HVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRE--------------LCAGFPEEFYKYMHYARNLAFDATPDY 266 (293)
T ss_dssp HHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHH--------------HTTTSCHHHHHHHHHHHHCCTTCCCCH
T ss_pred HHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHH--------------hcCCCCHHHHHHHHHHhcCCcccCcCH
Confidence 9999999999999764322211 11111110 0000000 011233567889999999999999999
Q ss_pred HHHHHHHHHhHHHh
Q 040540 648 TDAAAKLKKIKVKF 661 (669)
Q Consensus 648 ~~v~~~l~~~~~~~ 661 (669)
+.+.+.++++.++.
T Consensus 267 ~~l~~~l~~~~~~~ 280 (293)
T d1csna_ 267 DYLQGLFSKVLERL 280 (293)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888876543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=2.9e-23 Score=208.80 Aligned_cols=270 Identities=23% Similarity=0.323 Sum_probs=207.2
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccC
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 134 (669)
.+|-++++++ .+|..+. +++++|+|++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 14 ~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~ 90 (305)
T d1xkua_ 14 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90 (305)
T ss_dssp EEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence 3455556665 4565553 578999999999886666678899999999999999887778889999999999999999
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCC--cccCCccccCCCCCCEEEccCCCCCCCCC
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNL--QGQIPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l--~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
++. +|..+ ...+..|++..|.+.+..+..+.....+..+....|.. ....+..+..+++|+.+++++|.++. +|
T Consensus 91 l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~ 166 (305)
T d1xkua_ 91 LKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP 166 (305)
T ss_dssp CSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred cCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cC
Confidence 884 55433 35788888888888877666777778888888877754 33445677888899999999998875 34
Q ss_pred ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCC
Q 040540 213 PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 292 (669)
..+ .++|+.|++++|..++..+..+. .++.+++|++++|.+.+..+..+..+++|+.|++++|.++ .+|..|..++
T Consensus 167 ~~~--~~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~ 242 (305)
T d1xkua_ 167 QGL--PPSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 242 (305)
T ss_dssp SSC--CTTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred ccc--CCccCEEECCCCcCCCCChhHhh-ccccccccccccccccccccccccccccceeeeccccccc-cccccccccc
Confidence 433 57889999999988766665554 6888999999999998888888889999999999999887 5677888999
Q ss_pred CCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCc
Q 040540 293 HLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG 337 (669)
Q Consensus 293 ~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 337 (669)
+|++|++++|+++..+... +..........+|+.|++++|++.
T Consensus 243 ~L~~L~Ls~N~i~~i~~~~--f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 243 YIQVVYLHNNNISAIGSND--FCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp SCCEEECCSSCCCCCCTTS--SSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCEEECCCCccCccChhh--ccCcchhcccCCCCEEECCCCcCc
Confidence 9999999999988764321 112233445677888888888764
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=2.3e-23 Score=209.55 Aligned_cols=261 Identities=20% Similarity=0.245 Sum_probs=219.4
Q ss_pred CCCccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccC
Q 040540 38 ICSWAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAY 108 (669)
Q Consensus 38 ~c~~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 108 (669)
-|.|.++.|... +..++.|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus 9 ~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 9 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 367888888652 35689999999999876667899999999999999999988899999999999999999
Q ss_pred CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccc--cccCCcccCCCCCCCEEEcccCCCccc
Q 040540 109 NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNII--GGTIPSRIGNLRKLVNLGLWSCNLQGQ 186 (669)
Q Consensus 109 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l--~~~~p~~~~~L~~L~~L~l~~n~l~~~ 186 (669)
|++. .+|..+ ...|+.|++++|.+.+..+..+.....+..++...|.. ....+..+..+++|+.+++++|.+. .
T Consensus 89 n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~ 164 (305)
T d1xkua_ 89 NQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 164 (305)
T ss_dssp SCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence 9998 456543 35788999999999977777788888899999887753 3455677889999999999999987 4
Q ss_pred CCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccC
Q 040540 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266 (669)
Q Consensus 187 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 266 (669)
+|.. .+++|+.|++++|..++..+..+.+++.+++|++++|.+.+..+. .+..+++|++|+|++|+++ .+|.++..
T Consensus 165 l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~-~~~~l~~L~~L~L~~N~L~-~lp~~l~~ 240 (305)
T d1xkua_ 165 IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV-KVPGGLAD 240 (305)
T ss_dssp CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccc-cccccccceeeeccccccc-cccccccc
Confidence 5544 367999999999999999999999999999999999999854444 4447999999999999987 56889999
Q ss_pred CCCCCEEeCCCCCccccCccc------cCCCCCCCEEEccCCcccc
Q 040540 267 ATKLIGLDLGFNSFSGHIPNT------FGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 267 l~~L~~L~ls~n~l~~~~p~~------~~~l~~L~~L~l~~N~l~~ 306 (669)
+++|+.|++++|+++..-... +..+.+|+.|++++|.+..
T Consensus 241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~ 286 (305)
T d1xkua_ 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286 (305)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence 999999999999998643333 3456889999999998754
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.4e-25 Score=225.96 Aligned_cols=197 Identities=20% Similarity=0.180 Sum_probs=139.3
Q ss_pred ccCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+.+|+.+++.++|||+|+++++|...+ ..++||||+ ++++..+.+. ..+++.....|+.|++.||+|||
T Consensus 62 ~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH 138 (346)
T d1cm8a_ 62 KRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIH 138 (346)
T ss_dssp HHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHHh--ccccHHHHHHHHHHHHHHHHHHH
Confidence 35667999999999999999999987644 468999999 4678887764 35899999999999999999999
Q ss_pred cCCCCCCeeecCCCCc----------------------ccccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 521 HGHSSAPIIHCEGEDS----------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~----------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
. .+|+|||+|+. ...+...||+.|+|||++.+ ..++.++||||+||++|||++
T Consensus 139 ~----~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~ 214 (346)
T d1cm8a_ 139 A----AGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMIT 214 (346)
T ss_dssp H----TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHH
T ss_pred h----CCCcccccCcchhhcccccccccccccceeccCCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHH
Confidence 5 48999999954 12234469999999998876 457899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCC--Cccccc-----------cccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPH--RLSEVV-----------DTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|+.||..... ...+.......... ...... .+....... ..........+.+++.+|+..||++|
T Consensus 215 g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~dli~~mL~~dP~~R 292 (346)
T d1cm8a_ 215 GKTLFKGSDH-LDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDF-ASILTNASPLAVNLLEKMLVLDAEQR 292 (346)
T ss_dssp SSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCG-GGTCTTCCHHHHHHHHHHSCSSTTTS
T ss_pred CcCCCCCCCh-HHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccch-HHhccCCCHHHHHHHHHHCcCChhHC
Confidence 9999975321 11111111111100 000000 000000000 00011234567899999999999999
Q ss_pred CCHHHHHH
Q 040540 645 MHMTDAAA 652 (669)
Q Consensus 645 ps~~~v~~ 652 (669)
||+.|+++
T Consensus 293 ~ta~eiL~ 300 (346)
T d1cm8a_ 293 VTAGEALA 300 (346)
T ss_dssp CCHHHHHH
T ss_pred cCHHHHhc
Confidence 99999986
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.8e-25 Score=224.78 Aligned_cols=199 Identities=18% Similarity=0.182 Sum_probs=136.9
Q ss_pred ccCchhhhhhccccccccceecccccc--------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN--------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~--------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
+.+.+|+.+++.++|+|++++++.+.. ....++||||+.++.+..... ....++......|+.|++.|++|
T Consensus 54 ~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~qil~~l~~ 132 (318)
T d3blha1 54 ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSN-VLVKFTLSEIKRVMQMLLNGLYY 132 (318)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEEEEECCCEEHHHHHTC-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEEEEeccCCCccchhhh-cccccccHHHHHHHHHHHHHHHH
Confidence 345689999999999999999988754 345689999998776655443 45568888899999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC-CcCccccchhh
Q 040540 519 LRHGHSSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSY 568 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~ 568 (669)
||. .+|+|||+|+.. ...+.+||+.|+|||++.+. .|+.|+||||+
T Consensus 133 lH~----~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSl 208 (318)
T d3blha1 133 IHR----NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGA 208 (318)
T ss_dssp HHH----TTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHH
T ss_pred hcc----CCEEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccC
Confidence 994 489999999530 11223589999999998764 58999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCccHHHHHHH---hCCCCcccccc-c----c---cc---chhhhhhhhHHHHHHHHHHHh
Q 040540 569 GVLLMETFTRKRPTDEMFTGEMSLRRWVKE---SLPHRLSEVVD-T----N---LV---REEQAFSAKMDCLLSIMDLAL 634 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~~l~~~~~~---~~~~~~~~~~~-~----~---~~---~~~~~~~~~~~~~~~~~~l~~ 634 (669)
||++|||+||+.||.... ......-+.. ..+.......+ . . .. ...............+++++.
T Consensus 209 Gvil~el~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~ 286 (318)
T d3blha1 209 GCIMAEMWTRSPIMQGNT--EQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLID 286 (318)
T ss_dssp HHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHH
T ss_pred CceeeeHhhCCCCCCCCC--HHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHH
Confidence 999999999999997532 1111111111 11111100000 0 0 00 000000001123446789999
Q ss_pred hcccCCCCCCCCHHHHHH
Q 040540 635 DCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 635 ~c~~~~P~~Rps~~~v~~ 652 (669)
+|++.||++|||++|+++
T Consensus 287 ~mL~~dP~~R~sa~elL~ 304 (318)
T d3blha1 287 KLLVLDPAQRIDSDDALN 304 (318)
T ss_dssp HHSCSSTTTSCCHHHHHH
T ss_pred HHCcCChhHCcCHHHHHc
Confidence 999999999999999975
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.6e-25 Score=224.17 Aligned_cols=185 Identities=21% Similarity=0.186 Sum_probs=140.3
Q ss_pred ccCchhhhhhccccc-cccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRH-RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++.+++| |||+++++++......+++||||.+|+|.+++... ..+.......++.|++.|++|+|.
T Consensus 73 ~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~-~~~~e~~~~~~~~Qi~~al~~lH~---- 147 (322)
T d1vzoa_ 73 EHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR-ERFTEHEVQIYVGEIVLALEHLHK---- 147 (322)
T ss_dssp GGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhccCCCeEEEeeeeeccCCceeeeeecccccHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHhhc----
Confidence 457789999999977 79999999999899999999999999999999754 346778888899999999999995
Q ss_pred CCeeecCCCCc--------------------------ccccccccccccCccccccCC--CcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDS--------------------------VTQTTTMATIGYMAPEYGSEG--IVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gvil~el~t 577 (669)
.+|+|||+|+. ....+..||+.|+|||.+... .++.|+||||+||++|||+|
T Consensus 148 ~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyellt 227 (322)
T d1vzoa_ 148 LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT 227 (322)
T ss_dssp TTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHH
T ss_pred CCEEeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHh
Confidence 47999999953 011233589999999988653 47889999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
|+.||........ .....+...... + +.+...+..+.+++.+||+.||++||| ++|+++
T Consensus 228 G~~PF~~~~~~~~-~~~i~~~~~~~~------~---------~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~ 291 (322)
T d1vzoa_ 228 GASPFTVDGEKNS-QAEISRRILKSE------P---------PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 291 (322)
T ss_dssp SSCTTSCTTSCCC-HHHHHHHHHHCC------C---------CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred CCCCCCCCCHHHH-HHHHHHhcccCC------C---------CCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence 9999976543322 111111110000 0 011233456789999999999999995 677764
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.91 E-value=1.3e-22 Score=210.97 Aligned_cols=340 Identities=24% Similarity=0.290 Sum_probs=249.0
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
.+++..++.+.+. ...+.+|++|++++|.++. + +.+..+++|++|+|++|++++. | .++++++|++|++++|++
T Consensus 27 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i 100 (384)
T d2omza2 27 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQI 100 (384)
T ss_dssp HHTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred HHhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccc
Confidence 3455555655543 3467789999999998874 3 3578899999999999999854 3 388999999999999999
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTI 215 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 215 (669)
++.. .++++++|+.|++++|.+++..+ ......+..+....|.+....+................ .....+
T Consensus 101 ~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 171 (384)
T d2omza2 101 ADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPL 171 (384)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGG
T ss_pred cccc--ccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhh
Confidence 8543 37888999999988887765433 34456667777766666543332222222222221111 122344
Q ss_pred cCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCC
Q 040540 216 FNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS 295 (669)
Q Consensus 216 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 295 (669)
.............|... ...... .+++++.+++++|.+.+..| +...++|+.|++++|.+.. + ..+..+++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~--~~~~~~-~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 244 (384)
T d2omza2 172 ANLTTLERLDISSNKVS--DISVLA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLT 244 (384)
T ss_dssp TTCTTCCEEECCSSCCC--CCGGGG-GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCS
T ss_pred ccccccccccccccccc--cccccc-cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccc
Confidence 45555566666666543 222333 58899999999999887654 4567899999999999875 3 3678899999
Q ss_pred EEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCcccccc
Q 040540 296 VLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTL 375 (669)
Q Consensus 296 ~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l 375 (669)
.|++++|.+++. ..+..+++|+.|+++++.+.+..+ ...+..+..+.+..|.+.+. ..+..+
T Consensus 245 ~L~l~~n~l~~~----------~~~~~~~~L~~L~l~~~~l~~~~~------~~~~~~l~~l~~~~n~l~~~--~~~~~~ 306 (384)
T d2omza2 245 DLDLANNQISNL----------APLSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDI--SPISNL 306 (384)
T ss_dssp EEECCSSCCCCC----------GGGTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCC--GGGGGC
T ss_pred hhccccCccCCC----------CcccccccCCEeeccCcccCCCCc------cccccccccccccccccccc--cccchh
Confidence 999999988764 336678899999999999886543 12356778889999988763 457888
Q ss_pred CCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceec
Q 040540 376 QQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSS 439 (669)
Q Consensus 376 ~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 439 (669)
..++.+++++|++.+..+ +..+++|+.|++++|++++ ++ .++.+++|++|++++|++++.
T Consensus 307 ~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l 366 (384)
T d2omza2 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL 366 (384)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC
T ss_pred cccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC
Confidence 999999999999997643 7889999999999999975 44 589999999999999999854
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.7e-25 Score=225.29 Aligned_cols=198 Identities=19% Similarity=0.157 Sum_probs=137.6
Q ss_pred ccCchhhhhhccccccccceeccccccccc----cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDF----KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+.+.+|+.++..++|||++++++.+..+.. .+++++|+.+|+|.+++... .+++.....++.|+++||+|||.
T Consensus 51 ~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~~~--~l~~~~i~~i~~qil~al~yLH~- 127 (345)
T d1pmea_ 51 QRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHS- 127 (345)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhhhcC--CCCHHHHHHHHHHHHHHHHHHHH-
Confidence 356679999999999999999999866432 24556777899999999753 58999999999999999999995
Q ss_pred CCCCCeeecCCCCcc----------------------------cccccccccccCccccccC-CCcCccccchhhHHHHH
Q 040540 523 HSSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLM 573 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~ 573 (669)
.+|+|||+|+.. .....+||+.|+|||++.. ..++.++||||+||++|
T Consensus 128 ---~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~ 204 (345)
T d1pmea_ 128 ---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILA 204 (345)
T ss_dssp ---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHH
T ss_pred ---CCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceeh
Confidence 489999999530 1123358999999998854 56789999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCCccc-----------cc--cccccchhhhhhhhHHHHHHHHHHHhhcccCC
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSE-----------VV--DTNLVREEQAFSAKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~ 640 (669)
||++|+.||....... ................ .. .+..... +..........++.+++.+|++.|
T Consensus 205 eml~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~d 282 (345)
T d1pmea_ 205 EMLSNRPIFPGKHYLD-QLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKV-PWNRLFPNADSKALDLLDKMLTFN 282 (345)
T ss_dssp HHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCC-CHHHHCTTSCHHHHHHHHHHSCSS
T ss_pred HHhhCCCCCCCCCHHH-HHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCC-CHHHhCCCCCHHHHHHHHHHccCC
Confidence 9999999996532110 0111111100000000 00 0000000 000001122346789999999999
Q ss_pred CCCCCCHHHHHH
Q 040540 641 PDKRMHMTDAAA 652 (669)
Q Consensus 641 P~~Rps~~~v~~ 652 (669)
|++|||+.|+++
T Consensus 283 P~~R~ta~e~L~ 294 (345)
T d1pmea_ 283 PHKRIEVEQALA 294 (345)
T ss_dssp TTTSCCHHHHHT
T ss_pred hhHCcCHHHHhc
Confidence 999999999986
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.6e-25 Score=224.62 Aligned_cols=194 Identities=19% Similarity=0.134 Sum_probs=136.2
Q ss_pred cCchhhhhhccccccccceecccccc------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+.+|+.+++.++|||++++++++.. ....++|||||.++ +.+.+. ..+++.....++.|++.|++|||.
T Consensus 62 ~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~-l~~~~~---~~~~~~~i~~~~~qil~gl~~LH~ 137 (355)
T d2b1pa1 62 RAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDAN-LCQVIQ---MELDHERMSYLLYQMLCGIKHLHS 137 (355)
T ss_dssp HHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEE-HHHHHT---SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEEeccchH-HHHhhh---cCCCHHHHHHHHHHHHHHHHHhhh
Confidence 45689999999999999999998854 35678999999765 444443 247888999999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||+++||++
T Consensus 138 ----~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~ 213 (355)
T d2b1pa1 138 ----AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVR 213 (355)
T ss_dssp ----TTCCCSCCCGGGEEECTTCCEEECCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred ----cccccccCCccccccccccceeeechhhhhccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhh
Confidence 489999999641 1122358999999999999899999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHH----------------------HHhCCCC---ccccccccccchhhhhhhhHHHHHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWV----------------------KESLPHR---LSEVVDTNLVREEQAFSAKMDCLLSIMDL 632 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~----------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 632 (669)
|+.||...... ....... ....+.. ........... .........+..+.++
T Consensus 214 g~~pF~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~dl 290 (355)
T d2b1pa1 214 HKILFPGRDYI-DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFP--ADSEHNKLKASQARDL 290 (355)
T ss_dssp SSCSSCCSSHH-HHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSC--CSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHH-HHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccccccccccccccccc--ccccccccCCHHHHHH
Confidence 99998643210 0011110 0000000 00000000000 0112244567788999
Q ss_pred HhhcccCCCCCCCCHHHHHH
Q 040540 633 ALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 633 ~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.+|+..||++|||++||++
T Consensus 291 l~~mL~~dP~~R~ta~elL~ 310 (355)
T d2b1pa1 291 LSKMLVIDPAKRISVDDALQ 310 (355)
T ss_dssp HHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHCcCChhHCcCHHHHhc
Confidence 99999999999999999975
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.9e-23 Score=205.38 Aligned_cols=223 Identities=21% Similarity=0.203 Sum_probs=139.9
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc-ccC
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD-YNN 134 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n~ 134 (669)
++.+++++. .+|..+. +.+++|+|++|+|+...+..|.++++|++|++++|++.+..+..+.++..++.+... .|.
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 456666665 4554442 567888888888887666778888888888888888877777777777777777654 445
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCcc
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPT 214 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 214 (669)
++...|..+.++++|++|++++|.+....+..+..+.+|+.+++++|.+++..+..|..+++|++|++++|.+++..+..
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~ 172 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence 55444555666666666666666555444455555555555555555555444444555555555555555554443433
Q ss_pred ccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCC
Q 040540 215 IFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHL 294 (669)
Q Consensus 215 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 294 (669)
|. .+++|+++++++|++.+..|..|..+++|+.|++++|.+.+..+..|.++++|
T Consensus 173 f~-------------------------~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L 227 (284)
T d1ozna_ 173 FR-------------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (284)
T ss_dssp TT-------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred hc-------------------------cccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccccc
Confidence 33 45555555555555555556666666666666666666666666666666677
Q ss_pred CEEEccCCcccc
Q 040540 295 SVLNVMMNNLTT 306 (669)
Q Consensus 295 ~~L~l~~N~l~~ 306 (669)
+.|++++|.+..
T Consensus 228 ~~L~l~~N~l~C 239 (284)
T d1ozna_ 228 QYLRLNDNPWVC 239 (284)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEecCCCCCC
Confidence 777777666553
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.90 E-value=6.4e-25 Score=223.08 Aligned_cols=198 Identities=16% Similarity=0.178 Sum_probs=139.0
Q ss_pred ccCchhhhhhcccc-ccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVR-HRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+.+|+.++..++ |||++++++++.. ....++|||||++|+|.++.+ .+++.....|+.|+++||+|||.
T Consensus 74 ~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~----~l~e~~i~~i~~qil~aL~~LH~-- 147 (328)
T d3bqca1 74 KKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHS-- 147 (328)
T ss_dssp HHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTTT----SCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHhc----CCCHHHHHHHHHHHHHHHHHHhh--
Confidence 35667999999985 9999999998864 345789999999999987753 48889999999999999999995
Q ss_pred CCCCeeecCCCCc-------------------------ccccccccccccCccccccCC-CcCccccchhhHHHHHHHHh
Q 040540 524 SSAPIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 524 ~~~~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~t 577 (669)
.+|+|||+|+. ......+||+.|+|||.+.+. .++.++||||+||++|||++
T Consensus 148 --~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~ 225 (328)
T d3bqca1 148 --MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF 225 (328)
T ss_dssp --TTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred --cccccccccccceEEcCCCCeeeecccccceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhcc
Confidence 48999999953 112233589999999997764 47999999999999999999
Q ss_pred CCCCCCcCCCCCccH------------HHHHHHhCCCC---cccccccccc---chhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 578 RKRPTDEMFTGEMSL------------RRWVKESLPHR---LSEVVDTNLV---REEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 578 g~~p~~~~~~~~~~l------------~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
|+.||.......... ..|........ .......... ..............++.+++.+|++.
T Consensus 226 g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~ 305 (328)
T d3bqca1 226 RKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRY 305 (328)
T ss_dssp TCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCS
T ss_pred CCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccC
Confidence 999986532211111 11111111000 0000000000 00001111223445688999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
||.+|||++|+++
T Consensus 306 dP~~R~ta~e~L~ 318 (328)
T d3bqca1 306 DHQSRLTAREAME 318 (328)
T ss_dssp SGGGSCCHHHHHT
T ss_pred ChhHCcCHHHHhc
Confidence 9999999999975
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.3e-24 Score=217.33 Aligned_cols=201 Identities=16% Similarity=0.136 Sum_probs=142.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+.+|+.+++.++|||++++++++......++++||+.++++..++.. ...+++..+..++.|+++||+|||. .
T Consensus 46 ~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~q~~~aL~~lH~----~ 120 (292)
T d1unla_ 46 SSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHS----R 120 (292)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeecccccccccccc-ccccchhHHHHHHHHHHHHHHHhhc----C
Confidence 4567899999999999999999999999999999999999999888764 4567889999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCC-cCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|||+|+.. ......+++.|+|||.+.... ++.++||||+||++|||++|+.
T Consensus 121 ~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~ 200 (292)
T d1unla_ 121 NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGR 200 (292)
T ss_dssp TEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSC
T ss_pred CEeeecccCcccccccCCceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCC
Confidence 89999999541 111224778899999887654 7899999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhC-C-CC-cc---ccc---c-ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESL-P-HR-LS---EVV---D-TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~-~-~~-~~---~~~---~-~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
||.........+........ + .. .. ... . +..................+.+++.+|++.||.+|||++||
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~ 280 (292)
T d1unla_ 201 PLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280 (292)
T ss_dssp CSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred CCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 97542221111111111111 0 00 00 000 0 00000000001112334567899999999999999999998
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
++
T Consensus 281 L~ 282 (292)
T d1unla_ 281 LQ 282 (292)
T ss_dssp TT
T ss_pred hc
Confidence 65
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.2e-22 Score=201.79 Aligned_cols=226 Identities=23% Similarity=0.244 Sum_probs=156.4
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccc
Q 040540 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI 158 (669)
Q Consensus 79 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (669)
.++.++++++ .+|..+. +.+++|+|++|+|+...+..|.++++|++|++++|++....+..+..+..+..+....
T Consensus 15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~-- 89 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD-- 89 (284)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--
T ss_pred EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccc--
Confidence 3455666665 4555443 4567777777777655555667777777777777766655555555555555544321
Q ss_pred ccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchh
Q 040540 159 IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPST 238 (669)
Q Consensus 159 l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 238 (669)
.+.++...|..|..+++|++|++++|.+....+..+....+|+.+++++|.++ .+|..
T Consensus 90 ---------------------~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~ 147 (284)
T d1ozna_ 90 ---------------------NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147 (284)
T ss_dssp ---------------------CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred ---------------------ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChh
Confidence 23333334445555555566666665555555555555556666666666665 34443
Q ss_pred hhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCccccccc
Q 040540 239 IGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLS 318 (669)
Q Consensus 239 ~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 318 (669)
.+..+++|++|++++|++.+..+..|..+++|+.+++++|.+.+..|..|.++++|+.|+++.|++.+.+. .
T Consensus 148 ~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~--------~ 219 (284)
T d1ozna_ 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT--------E 219 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH--------H
T ss_pred HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc--------c
Confidence 34467788888888888888888899999999999999999999999999999999999999999987532 3
Q ss_pred ccCCCCCCCEEECcCCCCccc
Q 040540 319 SLTNCRNLSNLALASNPLGGI 339 (669)
Q Consensus 319 ~l~~l~~L~~L~l~~n~l~~~ 339 (669)
.+..+++|+.|++++|++...
T Consensus 220 ~~~~~~~L~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 220 ALAPLRALQYLRLNDNPWVCD 240 (284)
T ss_dssp HHTTCTTCCEEECCSSCEECS
T ss_pred ccccccccCEEEecCCCCCCC
Confidence 467889999999999998864
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.7e-24 Score=222.01 Aligned_cols=196 Identities=18% Similarity=0.171 Sum_probs=138.0
Q ss_pred cCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+.+|+.+++.++|+|++++++++... ...+++++|+.+|+|.+++.. ..+++.+...|+.|++.||+|||.
T Consensus 63 ~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~--~~l~e~~~~~i~~qil~aL~~LH~- 139 (348)
T d2gfsa1 63 RTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIHS- 139 (348)
T ss_dssp HHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhccc--ccccHHHHHHHHHHHHHHHHHHHh-
Confidence 456799999999999999999887543 234677888899999999964 358999999999999999999995
Q ss_pred CCCCCeeecCCCCc----------------------ccccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCC
Q 040540 523 HSSAPIIHCEGEDS----------------------VTQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 523 ~~~~~i~h~d~~~~----------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|+|||+|+. ....+..||+.|+|||...+. .++.++||||+||++|||++|+
T Consensus 140 ---~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~ 216 (348)
T d2gfsa1 140 ---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216 (348)
T ss_dssp ---TTCCCCCCCGGGEEECTTCCEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSS
T ss_pred ---CCCcccccCCccccccccccccccccchhcccCcccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCC
Confidence 48999999954 112234589999999986664 4689999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccc---c-----------ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVV---D-----------TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
.||.... .......+.........+.. . ....... ...........+.+++.+|++.||.+||
T Consensus 217 ~pF~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~dli~~mL~~dP~~R~ 293 (348)
T d2gfsa1 217 TLFPGTD--HIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN-FANVFIGANPLAVDLLEKMLVLDSDKRI 293 (348)
T ss_dssp CSCCCSS--HHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCC-HHHHSTTCCHHHHHHHHHHSCSSGGGSC
T ss_pred CCCCCCC--HHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcc-hhhhcCCCCHHHHHHHHHHCcCChhhCc
Confidence 9996532 11111111111000000000 0 0000000 0000112345678999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
|++|+++
T Consensus 294 ta~elL~ 300 (348)
T d2gfsa1 294 TAAQALA 300 (348)
T ss_dssp CHHHHHT
T ss_pred CHHHHhc
Confidence 9999986
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.1e-22 Score=197.83 Aligned_cols=194 Identities=23% Similarity=0.246 Sum_probs=143.2
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
...|.++++++. +|+.+. ++|++|+|++|.|++..+..|.++++|++|+|++|+++. +| .++.+++|++|+|++|
T Consensus 13 ~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N 87 (266)
T d1p9ag_ 13 LEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHN 87 (266)
T ss_dssp CEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSS
T ss_pred eEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccc
Confidence 345888888874 666553 578999999999987777788899999999999998873 44 3577888999999998
Q ss_pred CccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCc
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPP 213 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 213 (669)
++++ .+..+.++++|+.|++++|.+....+..+..+.++++|++++|.+....+..+..+++|+.|++++|++++..+.
T Consensus 88 ~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~ 166 (266)
T d1p9ag_ 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (266)
T ss_dssp CCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred cccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcc
Confidence 8874 566777788888888888877777777777777777777777777766666667777777777777777766666
Q ss_pred cccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCc
Q 040540 214 TIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255 (669)
Q Consensus 214 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~ 255 (669)
.|..+++|++|++++|+++ .+|..++ .+++|++|+|++|.
T Consensus 167 ~~~~l~~L~~L~Ls~N~L~-~lp~~~~-~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 167 LLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNP 206 (266)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCC
T ss_pred ccccccccceeecccCCCc-ccChhHC-CCCCCCEEEecCCC
Confidence 6666666666666666665 5665555 35555555555554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.4e-21 Score=191.81 Aligned_cols=201 Identities=22% Similarity=0.199 Sum_probs=124.5
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
.+...+.+.|.+++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+++. +| .++.+++|++
T Consensus 7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 81 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT 81 (266)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence 45566777888888887 4676554 578888888888886666778888888888888888873 33 2456666666
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+.+ .+..+.++++|+.|++++|.+.+..+..+..+.++++|++++|.++...+..+..+
T Consensus 82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l------------- 147 (266)
T d1p9ag_ 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT------------- 147 (266)
T ss_dssp EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-------------
T ss_pred cccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceecccccccc-------------
Confidence 6666666653 34455556666666666666555555555555555555555555554444444444
Q ss_pred ccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcc
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l 304 (669)
++++.+++++|++++..+..|..+++|+.|+|++|++. .+|..+..+++|+.|+|++|.+
T Consensus 148 ------------~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 148 ------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp ------------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred ------------ccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence 44555555555555444444555555555555555555 4455555555566666665544
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=9.5e-21 Score=195.02 Aligned_cols=201 Identities=16% Similarity=0.145 Sum_probs=129.1
Q ss_pred Cchhhhhhccc-----------cccccceeccccccc--cccceeeccCCCCChHHh-h-hcCCCccCHHHHHHHHHhHH
Q 040540 449 FDSECEVLRNV-----------RHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKW-L-YSHNYFLDILERLNIMIDVG 513 (669)
Q Consensus 449 ~~~e~~~l~~l-----------~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~-l-~~~~~~l~~~~~~~i~~~i~ 513 (669)
+..|+.+++.+ .|+|++++++++... ...+++|+++..+..... . ......+.+.....++.+++
T Consensus 56 ~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil 135 (362)
T d1q8ya_ 56 AEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLL 135 (362)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHH
Confidence 34566655555 467888888877543 344566666554433222 2 22445678888999999999
Q ss_pred hhhhhhhcCCCCCCeeecCCCCc----------------------------ccccccccccccCccccccCCCcCccccc
Q 040540 514 SALEYLRHGHSSAPIIHCEGEDS----------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDV 565 (669)
Q Consensus 514 ~~l~~lh~~~~~~~i~h~d~~~~----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv 565 (669)
+|++|||+. .+|+|||+|+. ......+||+.|+|||+.....++.++||
T Consensus 136 ~al~~lh~~---~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di 212 (362)
T d1q8ya_ 136 LGLDYMHRR---CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADI 212 (362)
T ss_dssp HHHHHHHHT---TCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHH
T ss_pred HHHHHHhhh---cCcccccCChhHeeeeccCcccccceeeEeecccccccccccccccccccccChhhccccCCCccccc
Confidence 999999963 48999999954 11223358999999999998889999999
Q ss_pred hhhHHHHHHHHhCCCCCCcCCCCC-----ccHHHHHHHh--CCC--------------------Cccccccccccc-hhh
Q 040540 566 YSYGVLLMETFTRKRPTDEMFTGE-----MSLRRWVKES--LPH--------------------RLSEVVDTNLVR-EEQ 617 (669)
Q Consensus 566 ~s~Gvil~el~tg~~p~~~~~~~~-----~~l~~~~~~~--~~~--------------------~~~~~~~~~~~~-~~~ 617 (669)
||+||+++||++|+.||....... ..+...+... .+. .....-...... ...
T Consensus 213 wSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (362)
T d1q8ya_ 213 WSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTE 292 (362)
T ss_dssp HHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHH
T ss_pred cchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhccc
Confidence 999999999999999996532111 1111111110 000 000000000000 001
Q ss_pred hhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 618 AFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 618 ~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...........+.+++.+|+..||.+|||++|+++
T Consensus 293 ~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~ 327 (362)
T d1q8ya_ 293 KYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 327 (362)
T ss_dssp TTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred ccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 11224567788999999999999999999999975
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.74 E-value=1e-15 Score=156.09 Aligned_cols=138 Identities=22% Similarity=0.273 Sum_probs=89.3
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
++++|||++++++ .+|+. .++|++|+|++|+|+ .+|..+ .+|+.|++++|+++ .+++. .++|++|+++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence 4678899988886 46642 467888889888887 566543 57888888888876 33321 1358888888
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+|.++ .+|. ++.+++|+.|++++|.+.... . ....+..+.+..+... .+..+..++.++.|++++|....
T Consensus 107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred ccccc-cccc-hhhhccceeeccccccccccc-c---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence 88876 3453 567777777777777664322 1 2344555555544432 23345566666777776666553
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.74 E-value=1.4e-15 Score=154.95 Aligned_cols=304 Identities=23% Similarity=0.298 Sum_probs=205.2
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 75 SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
.++++|||++|.++ .+|+. .++|++|+|++|+|+ .+|+.+ .+|+.|++++|+++. ++. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence 36899999999997 57754 468999999999998 678654 578888999999873 332 1 146999999
Q ss_pred ccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccc
Q 040540 155 EFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGR 234 (669)
Q Consensus 155 ~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (669)
++|.+. .+|. ++.+++|++|+++++.+.... . ....+..+.+..+... .+..+..++.++.+.+++|....
T Consensus 106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~- 176 (353)
T d1jl5a_ 106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK- 176 (353)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS-
T ss_pred cccccc-cccc-hhhhccceeeccccccccccc-c---ccccccchhhcccccc--ccccccccccceecccccccccc-
Confidence 999987 4564 688999999999999987433 2 2456778888776654 34567788899999999998753
Q ss_pred cchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCccc
Q 040540 235 LPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314 (669)
Q Consensus 235 ~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 314 (669)
++.. ....+.+...++.+. ..+ .+..++.|+.+++++|.... ++. ...++..+.+..+.+.....
T Consensus 177 ~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~~----- 241 (353)
T d1jl5a_ 177 LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE----- 241 (353)
T ss_dssp CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC-----
T ss_pred cccc----ccccccccccccccc-ccc-cccccccccccccccccccc-ccc---cccccccccccccccccccc-----
Confidence 3322 223455555555443 333 45678899999999987653 332 34567778887777654322
Q ss_pred ccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCch
Q 040540 315 SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPH 394 (669)
Q Consensus 315 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~ 394 (669)
....+...++..+.+.+... ........++..+.+.+. ...+++|+.|++++|.+.. +|.
T Consensus 242 -------~~~~l~~~~~~~~~~~~l~~--------l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~-lp~ 301 (353)
T d1jl5a_ 242 -------LPQSLTFLDVSENIFSGLSE--------LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIE-LPA 301 (353)
T ss_dssp -------CCTTCCEEECCSSCCSEESC--------CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSC-CCC
T ss_pred -------cccccccccccccccccccc--------ccchhcccccccCccccc----cccCCCCCEEECCCCccCc-ccc
Confidence 12345555555554443211 011223344444444322 2335678888998888873 554
Q ss_pred hhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCc
Q 040540 395 DLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPS 442 (669)
Q Consensus 395 ~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 442 (669)
.+.+|+.|++++|+++ .+|.. +.+|++|++++|++. .+|.
T Consensus 302 ---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~ 341 (353)
T d1jl5a_ 302 ---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD 341 (353)
T ss_dssp ---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred ---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence 3567888899999887 45643 457888999999876 4553
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=7.1e-18 Score=162.75 Aligned_cols=217 Identities=17% Similarity=0.128 Sum_probs=126.1
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccC-CccccCCcccccccccc-
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF-PSWIGVLSKLRILRLDY- 132 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~- 132 (669)
.++.++.++. .+|..+. +++++||+++|.++...+..|.++++|++|++++|.+...+ +..|.+++++++|.+..
T Consensus 12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 4566666665 5665543 57899999999988666667888999999999999887644 45678888888888754
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCC-cccCCCCCCCEEEcccCCCcccCCccccCCC-CCCEEEccCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQ-NLKNLDLADNKLSGL 210 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~ 210 (669)
|++....+..|.++++|+.+++++|.+....+ ..+..+..+..+...++.+....+..|..++ .++.|++++|.++..
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i 168 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 168 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 66766666777777777777777776653322 1223344444444445555444444444432 455555555555432
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
+...++..++..+ +.+++|+++...+..|.++++|+.|++++|.+....+..|.+
T Consensus 169 -~~~~~~~~~l~~~------------------------~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 223 (242)
T d1xwdc1 169 -HNCAFNGTQLDEL------------------------NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 223 (242)
T ss_dssp -CTTTTTTCCEEEE------------------------ECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred -ccccccchhhhcc------------------------ccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence 2222222222222 223444444333334555555555666555555333334555
Q ss_pred CCCCCEEEc
Q 040540 291 LRHLSVLNV 299 (669)
Q Consensus 291 l~~L~~L~l 299 (669)
+++|+.+++
T Consensus 224 l~~L~~l~~ 232 (242)
T d1xwdc1 224 LKKLRARST 232 (242)
T ss_dssp CCEEESSSE
T ss_pred CcccccCcC
Confidence 554444433
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=7.6e-18 Score=155.98 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=72.0
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccC-CcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHL-PKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
.++.++++++ .+|..+. +++++|+|++|.|++.+ +..|..+++|+.|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 4556666665 4454432 46667777777665433 344566666666666666666555566666666666666666
Q ss_pred CccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+++...|.. |.++++|++|+|++|++++..|..|..+++|++|+|++|.+..
T Consensus 89 ~l~~l~~~~------------------------F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 89 KIKEISNKM------------------------FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSS------------------------STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cccccCHHH------------------------HhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence 665444444 4444444455555555554445555555555555555555543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=4.5e-17 Score=155.26 Aligned_cols=202 Identities=17% Similarity=0.279 Sum_probs=99.0
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
++++.+.+.+.. .+..+.+|+.|++++|.++. ++ .+..+++|++|++++|++.+..| +..+++|+++++++|.+
T Consensus 24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (227)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence 444444444432 23455566666666666653 22 35566666666666666653322 55566666666666655
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTI 215 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 215 (669)
+. + +.++.+++|+.++++.+. ..+.. .+...+.++.+.++++.+... ..+
T Consensus 98 ~~-i-~~l~~l~~L~~l~l~~~~------------------------~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~ 147 (227)
T d1h6ua2 98 KN-V-SAIAGLQSIKTLDLTSTQ------------------------ITDVT--PLAGLSNLQVLYLDLNQITNI--SPL 147 (227)
T ss_dssp SC-C-GGGTTCTTCCEEECTTSC------------------------CCCCG--GGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred cc-c-cccccccccccccccccc------------------------ccccc--hhccccchhhhhchhhhhchh--hhh
Confidence 42 2 124444444444444443 32211 123334444444444444322 223
Q ss_pred cCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCC
Q 040540 216 FNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS 295 (669)
Q Consensus 216 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 295 (669)
.+.++|+.|++++|.+.+..+ +. .+++|++|++++|++.+. + .+..+++|+.|++++|+++.. + .+.++++|+
T Consensus 148 ~~~~~L~~L~l~~n~~~~~~~--l~-~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~ 220 (227)
T d1h6ua2 148 AGLTNLQYLSIGNAQVSDLTP--LA-NLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLF 220 (227)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GT-TCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCC
T ss_pred ccccccccccccccccccchh--hc-ccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCC
Confidence 444445555555444432111 22 355555555555555432 2 245556666666666665533 2 256666666
Q ss_pred EEEcc
Q 040540 296 VLNVM 300 (669)
Q Consensus 296 ~L~l~ 300 (669)
+|+++
T Consensus 221 ~L~ls 225 (227)
T d1h6ua2 221 IVTLT 225 (227)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 66664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.6e-17 Score=158.74 Aligned_cols=218 Identities=17% Similarity=0.147 Sum_probs=124.1
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCC-cccCCCCCCCeeeccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIP-NSLFNLSRLEMLRAEF 156 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~ 156 (669)
++++.+++.++ .+|..+. +++++|++++|++....+..|.++++|++|+|++|.+...++ ..|.++++++.+.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 45666666665 4555443 467777777777764444566777777777777776654332 3345555555555432
Q ss_pred -ccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCc-cccCCCCCcEEEcccCCCccc
Q 040540 157 -NIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPP-TIFNISTMRILTLESNQLSGR 234 (669)
Q Consensus 157 -n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~ 234 (669)
|.+.... +..|..+++|++|++++|.++...+. .+..+..+..+..+++.+. .
T Consensus 88 ~n~l~~~~------------------------~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-~ 142 (242)
T d1xwdc1 88 ANNLLYIN------------------------PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-T 142 (242)
T ss_dssp CTTCCEEC------------------------TTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-E
T ss_pred cccccccc------------------------cccccccccccccccchhhhcccccccccccccccccccccccccc-c
Confidence 3344444 44444455555555555544432111 1222333444444444443 3
Q ss_pred cchhhhccC-CCCCeeecccCcccccCCccccCCCCCCEE-eCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCc
Q 040540 235 LPSTIGHSL-RNIEYLALSTNNLIGKIPNSITNATKLIGL-DLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSAD 312 (669)
Q Consensus 235 ~p~~~~~~l-~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L-~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~ 312 (669)
++...+..+ ..++.|++++|++....+.. ....++..+ ++++|.+....+..|.++++|++|++++|+++..+..
T Consensus 143 i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~-- 219 (242)
T d1xwdc1 143 IERNSFVGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-- 219 (242)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS--
T ss_pred ccccccccccccceeeeccccccccccccc-ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHH--
Confidence 333222233 36777888888887544443 445555555 5678888865566789999999999999999876431
Q ss_pred ccccccccCCCCCCCEEECc
Q 040540 313 QWSFLSSLTNCRNLSNLALA 332 (669)
Q Consensus 313 ~~~~~~~l~~l~~L~~L~l~ 332 (669)
.+.++++|+.+++.
T Consensus 220 ------~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 220 ------GLENLKKLRARSTY 233 (242)
T ss_dssp ------SCTTCCEEESSSEE
T ss_pred ------HHcCCcccccCcCC
Confidence 24455555554443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=7e-17 Score=153.86 Aligned_cols=203 Identities=24% Similarity=0.363 Sum_probs=143.3
Q ss_pred EeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccc
Q 040540 80 LDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNII 159 (669)
Q Consensus 80 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 159 (669)
++++.+.+++.. .+..+.+|+.|++.+|.++. ++ .+..+++|++|++++|++++
T Consensus 24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~---------------------- 77 (227)
T d1h6ua2 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD---------------------- 77 (227)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC----------------------
T ss_pred HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeec----------------------
Confidence 445555554432 23445556666666665552 22 35555555555555555542
Q ss_pred cccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhh
Q 040540 160 GGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTI 239 (669)
Q Consensus 160 ~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 239 (669)
.. .+..+.+|+++++++|.++. ++ .+..+++|+.+++++|...+. ..+.....+..+.++++.+....+ +
T Consensus 78 --~~--~l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~ 147 (227)
T d1h6ua2 78 --LA--PLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--L 147 (227)
T ss_dssp --CG--GGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred --cc--cccccccccccccccccccc-cc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--h
Confidence 22 25666677777777776653 33 478899999999999988764 446778899999999998864333 3
Q ss_pred hccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccc
Q 040540 240 GHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319 (669)
Q Consensus 240 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 319 (669)
. .+++|++|++++|.+... ..+.++++|+.|++++|++.+ ++ .+.++++|+.|++++|++++. +.
T Consensus 148 ~-~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i----------~~ 212 (227)
T d1h6ua2 148 A-GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV----------SP 212 (227)
T ss_dssp G-GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC----------GG
T ss_pred c-cccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC----------cc
Confidence 3 578999999999988643 348899999999999999985 33 378899999999999998765 34
Q ss_pred cCCCCCCCEEECcC
Q 040540 320 LTNCRNLSNLALAS 333 (669)
Q Consensus 320 l~~l~~L~~L~l~~ 333 (669)
+.++++|+.|++++
T Consensus 213 l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 213 LANTSNLFIVTLTN 226 (227)
T ss_dssp GTTCTTCCEEEEEE
T ss_pred cccCCCCCEEEeeC
Confidence 67889999999864
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=8.4e-17 Score=151.07 Aligned_cols=179 Identities=24% Similarity=0.312 Sum_probs=95.3
Q ss_pred EcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCcc
Q 040540 57 NLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 57 ~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
++..+.+.+.++. ..+..|+.|++++|.+.+. + .+..+++|++|++++|++++. + .++.+++|++|++++|+++
T Consensus 30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc
Confidence 3444444443332 2455667777777766542 2 256667777777777776642 2 2566677777777777665
Q ss_pred ccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCcccc
Q 040540 137 GPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF 216 (669)
Q Consensus 137 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 216 (669)
+ +| .+.++++|+.|++++|.+.. ...+..+++|+.++++.|.+++. ..+..+++|+++++++|.+++. + .+.
T Consensus 104 ~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~ 175 (210)
T d1h6ta2 104 D-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLA 175 (210)
T ss_dssp C-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGT
T ss_pred c-cc-cccccccccccccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc-c-ccc
Confidence 3 23 35556666666666655432 23355555566666655555432 2344555566666666555542 1 244
Q ss_pred CCCCCcEEEcccCCCccccchhhhccCCCCCeeecc
Q 040540 217 NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALS 252 (669)
Q Consensus 217 ~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls 252 (669)
++++|+.|++++|.++ .+| .+. .+++|++|+|+
T Consensus 176 ~l~~L~~L~Ls~N~i~-~l~-~l~-~l~~L~~L~Ls 208 (210)
T d1h6ta2 176 GLTKLQNLYLSKNHIS-DLR-ALA-GLKNLDVLELF 208 (210)
T ss_dssp TCTTCCEEECCSSCCC-BCG-GGT-TCTTCSEEEEE
T ss_pred CCCCCCEEECCCCCCC-CCh-hhc-CCCCCCEEEcc
Confidence 5555555555555544 233 122 34445544443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.69 E-value=3.4e-17 Score=151.53 Aligned_cols=136 Identities=19% Similarity=0.176 Sum_probs=93.9
Q ss_pred ccccccccccCccccC-CcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEc
Q 040540 124 KLRILRLDYNNFTGPI-PNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDL 202 (669)
Q Consensus 124 ~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 202 (669)
++++|+|++|+|++.+ +..|.++++|+.|++++|.+.+..+..+..+++|++|++++|+++...|..|.++++|++|+|
T Consensus 30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L 109 (192)
T d1w8aa_ 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence 4444445555444322 333445555555555555555566677777888888888888888888889999999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCC
Q 040540 203 ADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIP 261 (669)
Q Consensus 203 ~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p 261 (669)
++|.|++..|..|..+++|+++++++|.+......... ...++.+.+..+.+....|
T Consensus 110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p 166 (192)
T d1w8aa_ 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSS
T ss_pred CCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCC
Confidence 99999998888999999999999999988654333222 1234444555555544334
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=2.2e-16 Score=148.14 Aligned_cols=163 Identities=23% Similarity=0.289 Sum_probs=139.9
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
.++.|+++++.+.... .+..+++|++|++++|.+++.. .++.+++|++|++++|++++ +| .+..+++|+.|+++
T Consensus 47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (210)
T ss_dssp TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence 5889999999997543 3788999999999999998644 37899999999999999984 45 58899999999999
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+|.+.. ...+..+++|+.+++++|.+.. +..+..+++|+++++++|++++. + .++.+++|+.|++++|.++. +
T Consensus 121 ~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l 193 (210)
T d1h6ta2 121 HNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-L 193 (210)
T ss_dssp TSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-C
T ss_pred cccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-C
Confidence 999863 3468899999999999999864 44678899999999999999864 3 38899999999999999985 4
Q ss_pred CccccCCCCCcEEEccc
Q 040540 212 PPTIFNISTMRILTLES 228 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~ 228 (669)
| .+.++++|++|++++
T Consensus 194 ~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 194 R-ALAGLKNLDVLELFS 209 (210)
T ss_dssp G-GGTTCTTCSEEEEEE
T ss_pred h-hhcCCCCCCEEEccC
Confidence 4 689999999999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=2.9e-16 Score=146.07 Aligned_cols=148 Identities=25% Similarity=0.368 Sum_probs=75.7
Q ss_pred CCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCee
Q 040540 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEML 152 (669)
Q Consensus 73 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 152 (669)
.+.+|++|++++|.+.. ++ .+..+++|++|++++|++++..| ++++++|++|++++|.+.. ++ .+.++++|+.|
T Consensus 38 ~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L 111 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL 111 (199)
T ss_dssp HHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred HhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccc
Confidence 44555666666665542 22 25555666666666666553222 5566666666666665542 22 24555555555
Q ss_pred ecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCc
Q 040540 153 RAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 153 ~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
++++|..... ..+..+++|+.|++++|++.. ++ .+..+++|+.|++++|++++. +.+.++++|++|++++|+++
T Consensus 112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS 185 (199)
T ss_dssp ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred cccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence 5555544322 234455555555555555542 22 345555555555555555542 12444555555555555544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=6.3e-16 Score=143.74 Aligned_cols=160 Identities=25% Similarity=0.346 Sum_probs=135.1
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|+++++++.. + ..+..+++|++|++++|.+++..| ++++++|++|++++|.+.. ++ .+.++++|+.|++
T Consensus 40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccccc
Confidence 468899999999874 3 347889999999999999986543 8999999999999999874 34 4889999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.+... ..+..+++|+.|++++|.+.. .+.+..+++|+.|++++|++++.. .++.+++|++|++++|+++..
T Consensus 114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i 187 (199)
T d2omxa2 114 FNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI 187 (199)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred cccccccc--cccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC
Confidence 99998743 458899999999999999864 346889999999999999998643 389999999999999999863
Q ss_pred CCccccCCCCCcEE
Q 040540 211 IPPTIFNISTMRIL 224 (669)
Q Consensus 211 ~p~~~~~l~~L~~L 224 (669)
+.+..+++|+.|
T Consensus 188 --~~l~~L~~L~~L 199 (199)
T d2omxa2 188 --SVLAKLTNLESL 199 (199)
T ss_dssp --GGGGGCTTCSEE
T ss_pred --ccccCCCCCCcC
Confidence 357788888765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.7e-17 Score=174.30 Aligned_cols=382 Identities=18% Similarity=0.156 Sum_probs=215.2
Q ss_pred CEEEEEcCCCCCcccc-cccccCCCCCCEEeCCCCcCcc----cCCcccCCCCCCCEEEccCCcCCcc----CCcccc-C
Q 040540 52 RVTALNLSDMGLGGTI-PLHFGNLSFLVSLDISENNFHG----HLPKELGQLRRLRVMSLAYNKLSGS----FPSWIG-V 121 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~-~ 121 (669)
+++.||++++++++.- ...+..++++++|+|++|.++. .+...+..+++|++|||++|.+... +.+.+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 5889999999997642 3345678899999999998873 3345567889999999999988521 222222 2
Q ss_pred CcccccccccccCcccc----CCcccCCCCCCCeeecccccccccCCccc----C-CCCCCCEEEcccCCCcccC----C
Q 040540 122 LSKLRILRLDYNNFTGP----IPNSLFNLSRLEMLRAEFNIIGGTIPSRI----G-NLRKLVNLGLWSCNLQGQI----P 188 (669)
Q Consensus 122 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~----~-~L~~L~~L~l~~n~l~~~~----p 188 (669)
..+|++|+|++|.++.. ++..+..+++|++|++++|.++..-...+ . ................... -
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35799999999988743 45567788889999988887764321111 1 1122333333333322110 1
Q ss_pred ccccCCCCCCEEEccCCCCCCC----CCccc-cCCCCCcEEEcccCCCccccch---hhhccCCCCCeeecccCccccc-
Q 040540 189 TEIGSLQNLKNLDLADNKLSGL----IPPTI-FNISTMRILTLESNQLSGRLPS---TIGHSLRNIEYLALSTNNLIGK- 259 (669)
Q Consensus 189 ~~~~~l~~L~~L~l~~N~l~~~----~p~~~-~~l~~L~~L~l~~n~l~~~~p~---~~~~~l~~L~~L~ls~n~l~~~- 259 (669)
..+.....++.++++++..... ....+ ........+++..+.+...-.. ........++.+++++|.+...
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 1123345667777766654311 00011 1122445566666554311100 1111345677777777654321
Q ss_pred ----CCccccCCCCCCEEeCCCCCccccC----ccccCCCCCCCEEEccCCccccCCCCCcccccccc-cCCCCCCCEEE
Q 040540 260 ----IPNSITNATKLIGLDLGFNSFSGHI----PNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS-LTNCRNLSNLA 330 (669)
Q Consensus 260 ----~p~~~~~l~~L~~L~ls~n~l~~~~----p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~-l~~l~~L~~L~ 330 (669)
.+........++.+++++|.+.... ...+...+.+..++++.|.+...... .+... ......|+.++
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~----~l~~~l~~~~~~L~~l~ 318 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR----LLCETLLEPGCQLESLW 318 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH----HHHHHHTSTTCCCCEEE
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc----hhhcccccccccccccc
Confidence 1223344566777777777665321 22334566777777777766532100 00011 12234677777
Q ss_pred CcCCCCccccchhHhhhhccccccceEeecCcccCCC----CCcccc-ccCCCcEEecCCCccccc----CchhhcCCCC
Q 040540 331 LASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGT----IPTSIG-TLQQLQGFYVPENNLQGY----VPHDLCHLER 401 (669)
Q Consensus 331 l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~----~~~~~~-~l~~L~~l~l~~n~~~~~----~p~~~~~l~~ 401 (669)
+++|.+.......+.........|+.|++++|.+.+. +...+. ....|+.|++++|.++.. +...+...++
T Consensus 319 l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 398 (460)
T d1z7xw1 319 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398 (460)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred ccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCC
Confidence 8777776554444444333445677777777776532 122222 244577788888777643 2334555677
Q ss_pred CCeeeCcCCccceeCcccc----c-CCCCCCEEECCCCcce
Q 040540 402 LNILNLSGNKLSGHIPPCL----A-SLTSLRELHLGSNKLS 437 (669)
Q Consensus 402 L~~L~ls~n~l~~~~p~~l----~-~l~~L~~L~l~~N~l~ 437 (669)
|+.|++++|.++......+ . ....|+.|++.+|.+.
T Consensus 399 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~ 439 (460)
T d1z7xw1 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439 (460)
T ss_dssp CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence 8888888887764322222 1 2346788888877765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4e-17 Score=172.94 Aligned_cols=359 Identities=20% Similarity=0.195 Sum_probs=233.2
Q ss_pred CCCEEeCCCCcCcccC-CcccCCCCCCCEEEccCCcCCc----cCCccccCCcccccccccccCcccc----CCcccC-C
Q 040540 76 FLVSLDISENNFHGHL-PKELGQLRRLRVMSLAYNKLSG----SFPSWIGVLSKLRILRLDYNNFTGP----IPNSLF-N 145 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~-~ 145 (669)
+|++||+++|++++.. ...++.++++++|+|++|.++. .+...+...++|++|+|++|.++.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 5789999999998642 3346678999999999999873 3455678889999999999998632 222333 2
Q ss_pred CCCCCeeeccccccccc----CCcccCCCCCCCEEEcccCCCcccCCccc----c-CCCCCCEEEccCCCCCCCC----C
Q 040540 146 LSRLEMLRAEFNIIGGT----IPSRIGNLRKLVNLGLWSCNLQGQIPTEI----G-SLQNLKNLDLADNKLSGLI----P 212 (669)
Q Consensus 146 l~~L~~L~l~~n~l~~~----~p~~~~~L~~L~~L~l~~n~l~~~~p~~~----~-~l~~L~~L~l~~N~l~~~~----p 212 (669)
..+|+.|++++|.++.. ++..+..+++|++|++++|.+.......+ . ..............+.... -
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35799999999988643 45667888999999999998864321111 1 1223344444443332110 1
Q ss_pred ccccCCCCCcEEEcccCCCccc----cchhhhccCCCCCeeecccCccccc----CCccccCCCCCCEEeCCCCCccc--
Q 040540 213 PTIFNISTMRILTLESNQLSGR----LPSTIGHSLRNIEYLALSTNNLIGK----IPNSITNATKLIGLDLGFNSFSG-- 282 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~-- 282 (669)
..+.....++.++++++..... +...+...-.....+++..+.+... ....+.....++.+++++|.+..
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 1233456788888888765421 1111122223456677776654321 11234456788999999997643
Q ss_pred ---cCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhh-hhccccccceEe
Q 040540 283 ---HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGN-FSASLQNIYAFE 358 (669)
Q Consensus 283 ---~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~l~~l~~l~ 358 (669)
.....+.....++.+++++|.+..... ......+...+.+..+++++|.+.......+.. .......++.++
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~----~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~ 318 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGC----GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 318 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred cchhhccccccccccccccccccccccccc----ccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence 223345567789999999987754311 112233456788999999999987543333322 122345788899
Q ss_pred ecCcccCCCCCcc----ccccCCCcEEecCCCccccc----Cchhhc-CCCCCCeeeCcCCcccee----CcccccCCCC
Q 040540 359 LGFNDLNGTIPTS----IGTLQQLQGFYVPENNLQGY----VPHDLC-HLERLNILNLSGNKLSGH----IPPCLASLTS 425 (669)
Q Consensus 359 l~~n~l~~~~~~~----~~~l~~L~~l~l~~n~~~~~----~p~~~~-~l~~L~~L~ls~n~l~~~----~p~~l~~l~~ 425 (669)
++++.+....... +.....|+.|++++|.+.+. ++..+. ....|+.|++++|.++.. ++..+..+++
T Consensus 319 l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 398 (460)
T d1z7xw1 319 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398 (460)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred ccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCC
Confidence 9998876543232 34456899999999998653 233332 456799999999999753 3445667799
Q ss_pred CCEEECCCCccee
Q 040540 426 LRELHLGSNKLSS 438 (669)
Q Consensus 426 L~~L~l~~N~l~~ 438 (669)
|++|++++|++..
T Consensus 399 L~~L~Ls~N~i~~ 411 (460)
T d1z7xw1 399 LRELDLSNNCLGD 411 (460)
T ss_dssp CCEEECCSSSCCH
T ss_pred CCEEECCCCcCCH
Confidence 9999999999863
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1e-14 Score=129.99 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=59.1
Q ss_pred cccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCC
Q 040540 70 HFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRL 149 (669)
Q Consensus 70 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 149 (669)
.+.+...+++|||++|+|+. ++..+..+++|++|+|++|+++. ++ .+..+++|++|++++|+++...+..+..+++|
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence 34555666666666666653 34445556666666666666652 32 35566666666666666654333334445555
Q ss_pred CeeecccccccccC-CcccCCCCCCCEEEcccCCC
Q 040540 150 EMLRAEFNIIGGTI-PSRIGNLRKLVNLGLWSCNL 183 (669)
Q Consensus 150 ~~L~l~~n~l~~~~-p~~~~~L~~L~~L~l~~n~l 183 (669)
+.|++++|.+.... -..+..+++|++|++++|.+
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ccceeccccccccccccccccccccchhhcCCCcc
Confidence 55555555543211 02234444444444444444
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=7.4e-14 Score=118.07 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=17.7
Q ss_pred cCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCcc
Q 040540 95 LGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
+..+++|++|++++|+++ .+|+.++.+++|++|++++|.++
T Consensus 16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~ 56 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 56 (124)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc
Confidence 344444444444444443 23333444444444444444443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.4e-14 Score=126.46 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=70.6
Q ss_pred cCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCC
Q 040540 95 LGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLV 174 (669)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~ 174 (669)
+.+..+|+.|+|++|+|+ .+|..+..+++|++|+|++|+++. ++ .+..+++|++|++++|.+..
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~------------- 77 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICR------------- 77 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCE-------------
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccC-------------
Confidence 556677788888888876 446656677777777777777763 22 34555555555555555443
Q ss_pred EEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCC-ccccCCCCCcEEEcccCCCccccch---hhhccCCCCCeee
Q 040540 175 NLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIP-PTIFNISTMRILTLESNQLSGRLPS---TIGHSLRNIEYLA 250 (669)
Q Consensus 175 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~---~~~~~l~~L~~L~ 250 (669)
..+..+..+++|++|++++|+++.... ..+..+++|+++++++|.++ ..|. .+...+++|++||
T Consensus 78 -----------l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 78 -----------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp -----------ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred -----------CCccccccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence 333333444555555555555543211 23445555555555555554 2221 1222466666665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=1.3e-13 Score=116.59 Aligned_cols=102 Identities=29% Similarity=0.325 Sum_probs=61.4
Q ss_pred CEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccC
Q 040540 102 RVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSC 181 (669)
Q Consensus 102 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n 181 (669)
|+|+|++|+++ .++ .++.+++|++|++++|.++ .+|+.++.+++|++|++++|.++.. | .++++++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 57788888886 444 3778888888888888886 4555666666666666666666532 2 3555555555555555
Q ss_pred CCcccC-CccccCCCCCCEEEccCCCCC
Q 040540 182 NLQGQI-PTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 182 ~l~~~~-p~~~~~l~~L~~L~l~~N~l~ 208 (669)
++.... ...++.+++|++|++++|.++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 554322 123444555555555555443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.1e-14 Score=141.18 Aligned_cols=224 Identities=19% Similarity=0.150 Sum_probs=108.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCcc-CCccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGS-FPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~ 132 (669)
+.+||+++.+.......+.. ..+..+.++...+..... ......+|++||++++.+... ++..+.++++|++|+|++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 35677766654332222211 124455555554432222 223445667777766665532 234455666666666666
Q ss_pred cCccccCCcccCCCCCCCeeecccc-ccccc-CCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFN-IIGGT-IPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
+.+++..+..++.+++|+.|+++++ .++.. +.....++++|++|++++|. .++..
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~-----------------------~~~~~ 137 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-----------------------DFTEK 137 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------------TCCHH
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc-----------------------ccccc
Confidence 6665555555555555555555543 22211 11112233444444444432 12210
Q ss_pred -CCccccC-CCCCcEEEcccC--CCccccchhhhccCCCCCeeecccCc-ccccCCccccCCCCCCEEeCCCC-CccccC
Q 040540 211 -IPPTIFN-ISTMRILTLESN--QLSGRLPSTIGHSLRNIEYLALSTNN-LIGKIPNSITNATKLIGLDLGFN-SFSGHI 284 (669)
Q Consensus 211 -~p~~~~~-l~~L~~L~l~~n--~l~~~~p~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~ls~n-~l~~~~ 284 (669)
+...+.. .++|+.|+++++ .++..-...+...+++|++|++++|. +++.....+.++++|+.|+++++ .++...
T Consensus 138 ~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~ 217 (284)
T d2astb2 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 217 (284)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence 1111111 234555555543 12211112222345666667766643 44455555666677777777763 455444
Q ss_pred ccccCCCCCCCEEEccCC
Q 040540 285 PNTFGNLRHLSVLNVMMN 302 (669)
Q Consensus 285 p~~~~~l~~L~~L~l~~N 302 (669)
...+..+++|+.|++.++
T Consensus 218 l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 218 LLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeeeCC
Confidence 455666777777777654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.3e-14 Score=137.65 Aligned_cols=180 Identities=20% Similarity=0.235 Sum_probs=121.7
Q ss_pred CCCCeeeccccccccc-CCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCC-CCCCC-CCccccCCCCCcE
Q 040540 147 SRLEMLRAEFNIIGGT-IPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADN-KLSGL-IPPTIFNISTMRI 223 (669)
Q Consensus 147 ~~L~~L~l~~n~l~~~-~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~ 223 (669)
.+|++|+++++.++.. ++..+..+++|++|++++|.++...+..++.+++|++|++++| .++.. +.....++++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 3455555555444322 3344566777888888888777777777778888888888885 45421 1222456889999
Q ss_pred EEcccC-CCccc-cchhhhccCCCCCeeecccCc--cccc-CCccccCCCCCCEEeCCCC-CccccCccccCCCCCCCEE
Q 040540 224 LTLESN-QLSGR-LPSTIGHSLRNIEYLALSTNN--LIGK-IPNSITNATKLIGLDLGFN-SFSGHIPNTFGNLRHLSVL 297 (669)
Q Consensus 224 L~l~~n-~l~~~-~p~~~~~~l~~L~~L~ls~n~--l~~~-~p~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L 297 (669)
|+++++ .++.. +...+....++|+.|+++++. ++.. +......+++|+.|++++| .+++.....+..+++|++|
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L 205 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence 999986 44422 223333345789999998753 3322 2233467899999999986 5776777788899999999
Q ss_pred EccCC-ccccCCCCCcccccccccCCCCCCCEEECcCC
Q 040540 298 NVMMN-NLTTESSSADQWSFLSSLTNCRNLSNLALASN 334 (669)
Q Consensus 298 ~l~~N-~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 334 (669)
+++++ .+++. .+..+..+++|+.|+++++
T Consensus 206 ~L~~C~~i~~~--------~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 206 SLSRCYDIIPE--------TLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp ECTTCTTCCGG--------GGGGGGGCTTCCEEECTTS
T ss_pred ECCCCCCCChH--------HHHHHhcCCCCCEEeeeCC
Confidence 99984 44432 1244677899999999987
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.38 E-value=2.3e-14 Score=145.45 Aligned_cols=137 Identities=16% Similarity=0.192 Sum_probs=71.7
Q ss_pred CCCCCEEEcccCCCccc----CCccccCCCCCCEEEccCCCCCCC-----CCccccCCCCCcEEEcccCCCccc----cc
Q 040540 170 LRKLVNLGLWSCNLQGQ----IPTEIGSLQNLKNLDLADNKLSGL-----IPPTIFNISTMRILTLESNQLSGR----LP 236 (669)
Q Consensus 170 L~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p 236 (669)
...|+.+.+++|.+... +...+...+.|+.|++++|.++.. +...+...++|+.|++++|.++.. +.
T Consensus 157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~ 236 (344)
T d2ca6a1 157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 236 (344)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence 34555555555554321 122233445566666666665421 122344555666666666665422 12
Q ss_pred hhhhccCCCCCeeecccCcccccCCcc----cc--CCCCCCEEeCCCCCcccc----CccccC-CCCCCCEEEccCCccc
Q 040540 237 STIGHSLRNIEYLALSTNNLIGKIPNS----IT--NATKLIGLDLGFNSFSGH----IPNTFG-NLRHLSVLNVMMNNLT 305 (669)
Q Consensus 237 ~~~~~~l~~L~~L~ls~n~l~~~~p~~----~~--~l~~L~~L~ls~n~l~~~----~p~~~~-~l~~L~~L~l~~N~l~ 305 (669)
..+. ..++|++|++++|.+.+..... +. ....|+.|++++|.+... +...+. +.++|+.|++++|.+.
T Consensus 237 ~~l~-~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 237 IALK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHGG-GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cccc-ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 2222 3566667777766665432111 21 235677788888876542 122232 4567888888888876
Q ss_pred cC
Q 040540 306 TE 307 (669)
Q Consensus 306 ~~ 307 (669)
..
T Consensus 316 ~~ 317 (344)
T d2ca6a1 316 EE 317 (344)
T ss_dssp TT
T ss_pred Cc
Confidence 53
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.33 E-value=7.9e-14 Score=141.38 Aligned_cols=246 Identities=15% Similarity=0.147 Sum_probs=147.1
Q ss_pred ccccCCCCCCEEeCCCCcCccc----CCcccCCCCCCCEEEccCCcCCcc---CC-------ccccCCcccccccccccC
Q 040540 69 LHFGNLSFLVSLDISENNFHGH----LPKELGQLRRLRVMSLAYNKLSGS---FP-------SWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 69 ~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~---~p-------~~~~~l~~L~~L~L~~n~ 134 (669)
..+.....|+.|+|++|.+... +-..+...+.|+.|+++++..... .| ..+...++|+.|+|++|.
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 3456677777888887776432 223355667777777776654311 11 112233444444444444
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccC-------------CccccCCCCCCEEE
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQI-------------PTEIGSLQNLKNLD 201 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~-------------p~~~~~l~~L~~L~ 201 (669)
++..-.. .+...+...++|++|++++|.+...- .......+.|+.++
T Consensus 105 i~~~~~~--------------------~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~ 164 (344)
T d2ca6a1 105 FGPTAQE--------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 164 (344)
T ss_dssp CCTTTHH--------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred ccccccc--------------------chhhhhcccccchheecccccccccccccccccccccccccccccCcccceee
Confidence 4321000 12223334556666666666553210 01123456899999
Q ss_pred ccCCCCCCC----CCccccCCCCCcEEEcccCCCccc-----cchhhhccCCCCCeeecccCccccc----CCccccCCC
Q 040540 202 LADNKLSGL----IPPTIFNISTMRILTLESNQLSGR-----LPSTIGHSLRNIEYLALSTNNLIGK----IPNSITNAT 268 (669)
Q Consensus 202 l~~N~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~-----~p~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~ 268 (669)
+++|.++.. +...+...+.|+.|++++|.+... +...+ ...++|+.|++++|.+... +...+...+
T Consensus 165 l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l-~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~ 243 (344)
T d2ca6a1 165 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243 (344)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred cccccccccccccccchhhhhhhhcccccccccccccccccchhhhh-cchhhhcccccccccccccccccccccccccc
Confidence 999988632 233355678999999999988632 11222 3578899999999987543 334567889
Q ss_pred CCCEEeCCCCCccccCc----cccC--CCCCCCEEEccCCccccCCCCCccccccccc-CCCCCCCEEECcCCCCccc
Q 040540 269 KLIGLDLGFNSFSGHIP----NTFG--NLRHLSVLNVMMNNLTTESSSADQWSFLSSL-TNCRNLSNLALASNPLGGI 339 (669)
Q Consensus 269 ~L~~L~ls~n~l~~~~p----~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~ 339 (669)
+|+.|++++|.+...-. ..+. ....|+.|++++|+++.... ......+ .++++|+.|++++|.+...
T Consensus 244 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~----~~l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV----RTLKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH----HHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred cchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH----HHHHHHHHccCCCCCEEECCCCcCCCc
Confidence 99999999999875422 2222 23679999999998765310 0111223 2567899999999998653
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.23 E-value=4.3e-14 Score=130.46 Aligned_cols=115 Identities=23% Similarity=0.281 Sum_probs=81.2
Q ss_pred ccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCC
Q 040540 67 IPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNL 146 (669)
Q Consensus 67 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 146 (669)
++.++..+++|++|+|++|.|+. ++ .+..+++|+.|+|++|++. .+|..+..+++|++|++++|+++.. ..+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence 44567888888999999888874 44 4778888889999888886 5666666667888888888888742 236667
Q ss_pred CCCCeeecccccccccCC-cccCCCCCCCEEEcccCCCccc
Q 040540 147 SRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQGQ 186 (669)
Q Consensus 147 ~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~~~ 186 (669)
++|++|++++|.++.... ..+..+++|+.|++++|.+...
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 777777777777653221 3456666666666666665543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.22 E-value=5.3e-14 Score=129.80 Aligned_cols=112 Identities=26% Similarity=0.290 Sum_probs=65.1
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCC
Q 040540 91 LPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNL 170 (669)
Q Consensus 91 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L 170 (669)
+|..+..+++|++|+|++|+|+ .++ .+.++++|++|+|++|.++ .+|.....+++|+.|++++|.++.. +.+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence 4556777888888888888877 344 4777888888888888876 3444444445566666666655432 224444
Q ss_pred CCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCCC
Q 040540 171 RKLVNLGLWSCNLQGQIP-TEIGSLQNLKNLDLADNKL 207 (669)
Q Consensus 171 ~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l 207 (669)
++|++|++++|+++.... ..+..+++|+.|++++|.+
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCcc
Confidence 555555555555442211 2344444555555544443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=4.1e-11 Score=105.33 Aligned_cols=104 Identities=18% Similarity=0.148 Sum_probs=80.2
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCC-cCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISEN-NFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
.++.+++++. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+...|..|.++++|++|+|++|
T Consensus 12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 3666666665 35667888899999999766 487766778999999999999999998777888999999999999999
Q ss_pred CccccCCcccCCCCCCCeeeccccccc
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIG 160 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~ 160 (669)
+++. +|.......+|+.|++++|.+.
T Consensus 91 ~l~~-l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 91 ALES-LSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred CCcc-cChhhhccccccccccCCCccc
Confidence 9884 4444444446777777777653
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.6e-10 Score=101.44 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=52.9
Q ss_pred CCEEEccCCcCCccCCccccCCccccccccccc-CccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcc
Q 040540 101 LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN-NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLW 179 (669)
Q Consensus 101 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~ 179 (669)
...++.+++.+. ..|..+..+++|++|++++| .++... +.+|.++++|+.|+++
T Consensus 10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~------------------------~~~f~~l~~L~~L~Ls 64 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLE------------------------LRDLRGLGELRNLTIV 64 (156)
T ss_dssp SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEEC------------------------GGGSCSCCCCSEEECC
T ss_pred CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccC------------------------chhhccccccCcceee
Confidence 344555555554 34445555555555555443 244333 3444555555555555
Q ss_pred cCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 180 SCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 180 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
+|+++...|..|..+++|++|+|++|+++.. |...+...+|+.|++++|.+
T Consensus 65 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l-~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp SSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCCCCEEECCSSCC
T ss_pred ccccCCcccccccccccccceeccCCCCccc-ChhhhccccccccccCCCcc
Confidence 5555555455555555555555555555533 22222233455566665554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.2e-08 Score=88.10 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=19.3
Q ss_pred CCCCCCCEEEccCCcCCcc--CCccccCCcccccccccccCcc
Q 040540 96 GQLRRLRVMSLAYNKLSGS--FPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
..++.|++|+|++|+++.. ++..+..+++|+.|+|++|.++
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~ 104 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 104 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence 3445555555555555432 1233444555555555555544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=9.2e-08 Score=84.03 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=5.0
Q ss_pred cCCCCCeee
Q 040540 242 SLRNIEYLA 250 (669)
Q Consensus 242 ~l~~L~~L~ 250 (669)
.+++|+.||
T Consensus 144 ~~P~L~~LD 152 (162)
T d1koha1 144 RFPKLLRLD 152 (162)
T ss_dssp TSTTCCEET
T ss_pred HCCCCCEEC
Confidence 455666554
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.75 E-value=3.2e-06 Score=76.22 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=52.7
Q ss_pred chhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
..|...+.++.|.+++..+++. ..+++|||++++.+.++ .......++.++++|++|||. .+|+
T Consensus 62 ~~e~~~l~~l~~~~v~~~~~~~----~~~lvme~~~~~~~~~l--------~~~~~~~i~~ql~~~l~~lH~----~gii 125 (191)
T d1zara2 62 RNEFRALQKLQGLAVPKVYAWE----GNAVLMELIDAKELYRV--------RVENPDEVLDMILEEVAKFYH----RGIV 125 (191)
T ss_dssp HHHHHHHHHTTTSSSCCEEEEE----TTEEEEECCCCEEGGGC--------CCSCHHHHHHHHHHHHHHHHH----TTEE
T ss_pred HHHHHHHHHccCCCcceEEEec----CCEEEEEeeccccccch--------hhHHHHHHHHHHHHHHHHHhh----CCEE
Confidence 3567777888888887766543 23689999997655432 223345789999999999995 4899
Q ss_pred ecCCCCc
Q 040540 530 HCEGEDS 536 (669)
Q Consensus 530 h~d~~~~ 536 (669)
|||+|+.
T Consensus 126 HrDiKP~ 132 (191)
T d1zara2 126 HGDLSQY 132 (191)
T ss_dssp CSCCSTT
T ss_pred EccCChh
Confidence 9999976
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.14 E-value=5.3e-05 Score=66.11 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=30.5
Q ss_pred CCCCCCEEeCCCC-cCccc----CCcccCCCCCCCEEEccCCcCCc----cCCccccCCcccccccccccCcc
Q 040540 73 NLSFLVSLDISEN-NFHGH----LPKELGQLRRLRVMSLAYNKLSG----SFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 73 ~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
+-+.|++|+|+++ .+... +-..+...+.|+.|+|++|.+.. .+.+.+...+.|++|+|++|.++
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence 3455666666653 33321 12234455556666666665542 11123333455555555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.94 E-value=0.00013 Score=63.50 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=20.4
Q ss_pred CCCCCCEEEccCC-cCCcc----CCccccCCcccccccccccCcc
Q 040540 97 QLRRLRVMSLAYN-KLSGS----FPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 97 ~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
+.+.|+.|+|+++ .+... +-..+...++|++|+|++|.+.
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~ 57 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 57 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence 4466777777653 34321 1123444455666666665554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.24 E-value=0.00036 Score=60.50 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=31.8
Q ss_pred cCCCCCCEEeCCC-CcCccc----CCcccCCCCCCCEEEccCCcCCcc----CCccccCCcccccccccccCcc
Q 040540 72 GNLSFLVSLDISE-NNFHGH----LPKELGQLRRLRVMSLAYNKLSGS----FPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 72 ~~l~~L~~L~Ls~-N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
.+.+.|++|+|++ +.++.. +-..+...+.|+.|++++|.+... +-+.+...++++.|++++|.++
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 3445666666665 334321 222344555666666666655421 1122334455555555555554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=94.19 E-value=0.014 Score=49.90 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=11.9
Q ss_pred cccCCCCCCEEECCCCcc
Q 040540 419 CLASLTSLRELHLGSNKL 436 (669)
Q Consensus 419 ~l~~l~~L~~L~l~~N~l 436 (669)
.+...++|+.|+++.+..
T Consensus 127 ~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 127 MLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHCSSCCEEECCCSSH
T ss_pred HHHhCCCcCEEeCcCCCC
Confidence 445667788888776543
|