Citrus Sinensis ID: 040562
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | 2.2.26 [Sep-21-2011] | |||||||
| Q6XBF8 | 437 | Aspartic proteinase CDR1 | yes | no | 0.925 | 0.903 | 0.530 | 1e-110 | |
| Q3EBM5 | 447 | Probable aspartic proteas | no | no | 0.964 | 0.921 | 0.472 | 1e-94 | |
| Q766C3 | 437 | Aspartic proteinase nepen | N/A | no | 0.894 | 0.874 | 0.369 | 5e-60 | |
| Q766C2 | 438 | Aspartic proteinase nepen | N/A | no | 0.882 | 0.860 | 0.334 | 1e-53 | |
| Q9LHE3 | 470 | Protein ASPARTIC PROTEASE | no | no | 0.899 | 0.817 | 0.334 | 3e-43 | |
| Q9LS40 | 500 | Protein ASPARTIC PROTEASE | no | no | 0.754 | 0.644 | 0.349 | 9e-39 | |
| Q9S9K4 | 475 | Aspartic proteinase-like | no | no | 0.819 | 0.736 | 0.295 | 9e-37 | |
| Q9LZL3 | 453 | Aspartic proteinase PCS1 | no | no | 0.730 | 0.688 | 0.272 | 2e-22 | |
| Q9LX20 | 528 | Aspartic proteinase-like | no | no | 0.953 | 0.770 | 0.266 | 9e-22 | |
| A2ZC67 | 410 | Aspartic proteinase Asp1 | N/A | no | 0.756 | 0.787 | 0.244 | 4e-13 |
| >sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust.
Identities = 219/413 (53%), Positives = 285/413 (69%), Gaps = 18/413 (4%)
Query: 27 VGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQADIIP 86
+GF+ +LIHRDSPKSPFYNP ET QRLRNA++RS NR+ HF + + ++ D+
Sbjct: 29 LGFTADLIHRDSPKSPFYNPMETSSQRLRNAIHRSVNRVFHFTEKDNTPQPQI---DLTS 85
Query: 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYL 146
N GEYL+ +SIGTPP I+A+ADTGSDL+WTQC PC CY Q +PLFDP+ SSTYK +
Sbjct: 86 NSGEYLMNVSIGTPPFPIMAIADTGSDLLWTQCAPC--DDCYTQVDPLFDPKTSSTYKDV 143
Query: 147 SCSSSQC-APPIKDSCSAEGN-CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
SCSSSQC A + SCS N C YS+SYGD+S++ G++A +T+T+GS+ + + L I+
Sbjct: 144 SCSSSQCTALENQASCSTNDNTCSYSLSYGDNSYTKGNIAVDTLTLGSSDTRPMQLKNII 203
Query: 205 FGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLV-----QQSSTKINFG 259
GCG N G FN K GIVGLGGG SLI Q+ +I GKFSYCLV + ++KINFG
Sbjct: 204 IGCGHNNAGTFNKKGSGIVGLGGGPVSLIKQLGDSIDGKFSYCLVPLTSKKDQTSKINFG 263
Query: 260 TNGIVSGSGVVSTPLLAK-NPKTFYSLTLDAISVGDQRL--GVISGSNPGGDIVIDSGTT 316
TN IVSGSGVVSTPL+AK + +TFY LTL +ISVG +++ + G+I+IDSGTT
Sbjct: 264 TNAIVSGSGVVSTPLIAKASQETFYYLTLKSISVGSKQIQYSGSDSESSEGNIIIDSGTT 323
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSISSRPRFPEVTIHFRDADVKLST 373
LT LP + S+L ++S I A+ + P LCYS + + P +T+HF ADVKL +
Sbjct: 324 LTLLPTEFYSELEDAVASSIDAEKKQDPQSGLSLCYSATGDLKVPVITMHFDGADVKLDS 383
Query: 374 SNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426
SN F+ +SEDLVC F +YGN+ Q NFL+GYD +TVSFKPTDC+K
Sbjct: 384 SNAFVQVSEDLVCFAFRGSPSFSIYGNVAQMNFLVGYDTVSKTVSFKPTDCAK 436
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Involved in salicylic acid-dependent inducible resistance responses. May release an endogenous peptide elicitor required for the activation of inducible resistance mechanisms. Possesses protease activity in vitro. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: - |
| >sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 210/444 (47%), Positives = 269/444 (60%), Gaps = 32/444 (7%)
Query: 9 FILFFLCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHF 68
+ FFL SV + FSVELIHRDSP SP YNP T RL A RS +R R F
Sbjct: 6 LLCFFLFFSVTLSSSGHPKNFSVELIHRDSPLSPIYNPQITVTDRLNAAFLRSVSRSRRF 65
Query: 69 NKNSSVSSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCY 128
N S + Q+ +I GE+ + I+IGTPP+++ A+ADTGSDL W QC+PC QCY
Sbjct: 66 NHQLSQTDL---QSGLIGADGEFFMSITIGTPPIKVFAIADTGSDLTWVQCKPC--QQCY 120
Query: 129 KQDNPLFDPQRSSTYKYLSCSSSQCAP--PIKDSCSAEGN-CRYSVSYGDDSFSNGDLAT 185
K++ P+FD ++SSTYK C S C + C N C+Y SYGD SFS GD+AT
Sbjct: 121 KENGPIFDKKKSSTYKSEPCDSRNCQALSSTERGCDESNNICKYRYSYGDQSFSKGDVAT 180
Query: 186 ETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFS 245
ETV++ S SG V+ P VFGCG NGG F+ GI+GLGGG SLISQ+ ++I+ KFS
Sbjct: 181 ETVSIDSASGSPVSFPGTVFGCGYNNGGTFDETGSGIIGLGGGHLSLISQLGSSISKKFS 240
Query: 246 YCLVQQSSTK-----INFGTNGIVSG----SGVVSTPLLAKNPKTFYSLTLDAISVGDQR 296
YCL +S+T IN GTN I S SGVVSTPL+ K P T+Y LTL+AISVG ++
Sbjct: 241 YCLSHKSATTNGTSVINLGTNSIPSSLSKDSGVVSTPLVDKEPLTYYYLTLEAISVGKKK 300
Query: 297 LGVISGS-NPG---------GDIVIDSGTTLTYLPPAYASKLLS-VMSSMIAAQPVEGPY 345
+ S NP G+I+IDSGTTLT L + K S V S+ A+ V P
Sbjct: 301 IPYTGSSYNPNDDGILSETSGNIIIDSGTTLTLLEAGFFDKFSSAVEESVTGAKRVSDPQ 360
Query: 346 DL---CY-SISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNI 401
L C+ S S+ PE+T+HF ADV+LS N F+ +SED+VC ++ +YGN
Sbjct: 361 GLLSHCFKSGSAEIGLPEITVHFTGADVRLSPINAFVKLSEDMVCLSMVPTTEVAIYGNF 420
Query: 402 MQTNFLIGYDIEGRTVSFKPTDCS 425
Q +FL+GYD+E RTVSF+ DCS
Sbjct: 421 AQMDFLVGYDLETRTVSFQHMDCS 444
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: - EC: . EC: - |
| >sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 155/420 (36%), Positives = 219/420 (52%), Gaps = 38/420 (9%)
Query: 23 EAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQA 82
EA+ GF + L H DS K N T +Q L A+ R + RL+ + ++ +
Sbjct: 35 EAKVTGFQIMLEHVDSGK------NLTKFQLLERAIERGSRRLQRLE--AMLNGPSGVET 86
Query: 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSST 142
+ GEYL+ +SIGTP A+ DTGSDLIWTQCQPC +QC+ Q P+F+PQ SS+
Sbjct: 87 SVYAGDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPC--TQCFNQSTPIFNPQGSSS 144
Query: 143 YKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPE 202
+ L CSS C +CS C+Y+ YGD S + G + TET+T GS V++P
Sbjct: 145 FSTLPCSSQLCQALSSPTCS-NNFCQYTYGYGDGSETQGSMGTETLTFGS-----VSIPN 198
Query: 203 IVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQ-QSSTKINF--- 258
I FGCG N G G+VG+G G SL SQ+ T KFSYC+ SST N
Sbjct: 199 ITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVT---KFSYCMTPIGSSTPSNLLLG 255
Query: 259 -GTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGV------ISGSNPGGDIVI 311
N + +GS +T + + TFY +TL+ +SVG RL + ++ +N G I+I
Sbjct: 256 SLANSVTAGS-PNTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIII 314
Query: 312 DSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSISSRP---RFPEVTIHFR 365
DSGTTLTY + S I V G +DLC+ S P + P +HF
Sbjct: 315 DSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFD 374
Query: 366 DADVKLSTSNVFMNISEDLVC-SVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424
D++L + N F++ S L+C ++ ++ + ++GNI Q N L+ YD VSF C
Sbjct: 375 GGDLELPSENYFISPSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434
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Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake. Nepenthes gracilis (taxid: 150966) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 3 EC: . EC: 1 EC: 2 |
| >sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 212/415 (51%), Gaps = 38/415 (9%)
Query: 28 GFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQADIIPN 87
G V+L DS K N T Y+ ++ A+ R R+R N + + SS + +
Sbjct: 41 GLRVDLEQVDSGK------NLTKYELIKRAIKRGERRMRSIN--AMLQSSSGIETPVYAG 92
Query: 88 VGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLS 147
GEYL+ ++IGTP A+ DTGSDLIWTQC+PC +QC+ Q P+F+PQ SS++ L
Sbjct: 93 DGEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPC--TQCFSQPTPIFNPQDSSSFSTLP 150
Query: 148 CSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGC 207
C S C ++C+ C+Y+ YGD S + G +ATET T ++S +P I FGC
Sbjct: 151 CESQYCQDLPSETCN-NNECQYTYGYGDGSTTQGYMATETFTFETSS-----VPNIAFGC 204
Query: 208 GTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTK-----INFGTNG 262
G N G G++G+G G SL SQ+ G+FSYC+ S+ + +G
Sbjct: 205 GEDNQGFGQGNGAGLIGMGWGPLSLPSQLG---VGQFSYCMTSYGSSSPSTLALGSAASG 261
Query: 263 IVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS-----NPGGDIVIDSGTTL 317
+ GS + + NP T+Y +TL I+VG LG+ S + + G ++IDSGTTL
Sbjct: 262 VPEGSPSTTLIHSSLNP-TYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTL 320
Query: 318 TYLPPAYASKLLSVMSSMIAAQPVE---GPYDLCY---SISSRPRFPEVTIHFRDADVKL 371
TYLP + + + I V+ C+ S S + PE+++ F + L
Sbjct: 321 TYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGVLNL 380
Query: 372 STSNVFMNISEDLVCSVFNARDD--IPLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424
N+ ++ +E ++C + I ++GNI Q + YD++ VSF PT C
Sbjct: 381 GEQNILISPAEGVICLAMGSSSQLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435
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Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake. Nepenthes gracilis (taxid: 150966) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 3 EC: . EC: 1 EC: 2 |
| >sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 210/424 (49%), Gaps = 40/424 (9%)
Query: 29 FSVELIHRDS-PKSPFYNPNETPYQRLRNALNRSANRLRHFNKN---SSVSSSKVSQ--A 82
+++ L+HRD P + N + + R+R +R + LR + SS S +V+ +
Sbjct: 59 YTLRLLHRDRFPSVTYRNHHHRLHARMRRDTDRVSAILRRISGKVIPSSDSRYEVNDFGS 118
Query: 83 DIIPNV----GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQ 138
DI+ + GEY +RI +G+PP + V D+GSD++W QCQPC CYKQ +P+FDP
Sbjct: 119 DIVSGMDQGSGEYFVRIGVGSPPRDQYMVIDSGSDMVWVQCQPC--KLCYKQSDPVFDPA 176
Query: 139 RSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAV 198
+S +Y +SC SS C I++S G CRY V YGD S++ G LA ET+T T + V
Sbjct: 177 KSGSYTGVSCGSSVCD-RIENSGCHSGGCRYEVMYGDGSYTKGTLALETLTFAKTVVRNV 235
Query: 199 ALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQ---SSTK 255
A+ GCG +N G F ++G+GGG S + Q+ G F YCLV + S+
Sbjct: 236 AM-----GCGHRNRGMFIGAAG-LLGIGGGSMSFVGQLSGQTGGAFGYCLVSRGTDSTGS 289
Query: 256 INFGTNGIVSGSGVVSTPLLAKNPK--TFYSLTLDAISVGDQRL----GVISGSNPG-GD 308
+ FG + G+ V L +NP+ +FY + L + VG R+ GV + G G
Sbjct: 290 LVFGREALPVGASWVP---LVRNPRAPSFYYVGLKGLGVGGVRIPLPDGVFDLTETGDGG 346
Query: 309 IVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSISS--RPRFPEVTIH 363
+V+D+GT +T LP A S A P +D CY +S R P V+ +
Sbjct: 347 VVMDTGTAVTRLPTAAYVAFRDGFKSQTANLPRASGVSIFDTCYDLSGFVSVRVPTVSFY 406
Query: 364 FRDADV-KLSTSNVFMNISED-LVCSVFNAR-DDIPLYGNIMQTNFLIGYDIEGRTVSFK 420
F + V L N M + + C F A + + GNI Q + +D V F
Sbjct: 407 FTEGPVLTLPARNFLMPVDDSGTYCFAFAASPTGLSIIGNIQQEGIQVSFDGANGFVGFG 466
Query: 421 PTDC 424
P C
Sbjct: 467 PNVC 470
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Aspartic protease that may be involved in drought avoidance through abscisic acid signaling. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 3 EC: . EC: - |
| >sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 177/355 (49%), Gaps = 33/355 (9%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
GEY RI +GTP E+ V DTGSD+ W QC+PC + CY+Q +P+F+P SSTYK L+C
Sbjct: 160 GEYFSRIGVGTPAKEMYLVLDTGSDVNWIQCEPC--ADCYQQSDPVFNPTSSSTYKSLTC 217
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
S+ QC+ +C + C Y VSYGD SF+ G+LAT+TVT G+ SG+ + + GCG
Sbjct: 218 SAPQCSLLETSACRSN-KCLYQVSYGDGSFTVGELATDTVTFGN-SGK---INNVALGCG 272
Query: 209 TKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTK---INFGTNGIVS 265
N G F + GG S+ +QMK T FSYCLV + S K ++F N +
Sbjct: 273 HDNEGLFTGAAGLLGLGGGV-LSITNQMKAT---SFSYCLVDRDSGKSSSLDF--NSVQL 326
Query: 266 GSGVVSTPLLA-KNPKTFYSLTLDAISVGDQRLGV------ISGSNPGGDIVIDSGTTLT 318
G G + PLL K TFY + L SVG +++ + + S GG +++D GT +T
Sbjct: 327 GGGDATAPLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGG-VILDCGTAVT 385
Query: 319 YL-PPAYAS---KLLSVMSSMIAAQPVEGPYDLCYSISSRP--RFPEVTIHFRDAD-VKL 371
L AY S L + ++ +D CY SS + P V HF + L
Sbjct: 386 RLQTQAYNSLRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDL 445
Query: 372 STSNVFMNISED-LVCSVFN-ARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424
N + + + C F + + GN+ Q I YD+ + C
Sbjct: 446 PAKNYLIPVDDSGTFCFAFAPTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGNKC 500
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Aspartic protease involved in drought avoidance through abscisic acid signaling. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 3 EC: . EC: - |
| >sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 191/399 (47%), Gaps = 49/399 (12%)
Query: 65 LRHFNKNSSVSSSKVSQADIIP--------NVGEYLIRISIGTPPVEILAVADTGSDLIW 116
L HF + + S++ + +P +VG Y +I +G+PP E DTGSD++W
Sbjct: 40 LEHFKSHDTRRHSRMLASIDLPLGGDSRVDSVGLYFTKIKLGSPPKEYHVQVDTGSDILW 99
Query: 117 TQCQPCPPSQCYKQDN-----PLFDPQRSSTYKYLSCSSSQCA-PPIKDSCSAEGNCRYS 170
C+PCP +C + N LFD SST K + C C+ DSC C Y
Sbjct: 100 INCKPCP--KCPTKTNLNFRLSLFDMNASSTSKKVGCDDDFCSFISQSDSCQPALGCSYH 157
Query: 171 VSYGDDSFSNGDLATETVTVGSTSGQAVALP---EIVFGCGTKNGGKF---NSKTDGIVG 224
+ Y D+S S+G + +T+ +G P E+VFGCG+ G+ +S DG++G
Sbjct: 158 IVYADESTSDGKFIRDMLTLEQVTGDLKTGPLGQEVVFGCGSDQSGQLGNGDSAVDGVMG 217
Query: 225 LGGGDASLISQMKTTIAGK--FSYCLVQQSSTKINFGTNGIVSGSGVVSTPLLAKNPKTF 282
G + S++SQ+ T K FS+CL I F G+V V +TP++ +
Sbjct: 218 FGQSNTSVLSQLAATGDAKRVFSHCLDNVKGGGI-FAV-GVVDSPKVKTTPMVPN--QMH 273
Query: 283 YSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQP-- 340
Y++ L + V L + G ++DSGTTL Y P S++ +++A QP
Sbjct: 274 YNVMLMGMDVDGTSLDLPRSIVRNGGTIVDSGTTLAYFPKVLYD---SLIETILARQPVK 330
Query: 341 ---VEGPYDLCYSISSR--PRFPEVTIHFRDADVKLST--SNVFMNISEDLVCSVFNA-- 391
VE + C+S S+ FP V+ F D+ VKL+ + + E+L C + A
Sbjct: 331 LHIVEETFQ-CFSFSTNVDEAFPPVSFEFEDS-VKLTVYPHDYLFTLEEELYCFGWQAGG 388
Query: 392 -----RDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425
R ++ L G+++ +N L+ YD++ + + +CS
Sbjct: 389 LTTDERSEVILLGDLVLSNKLVVYDLDNEVIGWADHNCS 427
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 3 EC: . EC: - |
| >sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 164/374 (43%), Gaps = 62/374 (16%)
Query: 100 PPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPL--FDPQRSSTYKYLSCSSSQCAPPI 157
PP I V DTGS+L W +C NP+ FDP RSS+Y + CSS C
Sbjct: 82 PPQNISMVIDTGSELSWLRCNRS------SNPNPVNNFDPTRSSSYSPIPCSSPTCRTRT 135
Query: 158 KD-----SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGC-GTKN 211
+D SC ++ C ++SY D S S G+LA E G+++ + ++FGC G+ +
Sbjct: 136 RDFLIPASCDSDKLCHATLSYADASSSEGNLAAEIFHFGNSTNDS----NLIFGCMGSVS 191
Query: 212 GG--KFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCL--VQQSSTKINFGTNGIVSGS 267
G + ++KT G++G+ G S ISQM KFSYC+ + G + +
Sbjct: 192 GSDPEEDTKTTGLLGMNRGSLSFISQMGFP---KFSYCISGTDDFPGFLLLGDSNFTWLT 248
Query: 268 GVVSTPL------LAKNPKTFYSLTLDAISVGDQRLGV-----ISGSNPGGDIVIDSGTT 316
+ TPL L + Y++ L I V + L + + G ++DSGT
Sbjct: 249 PLNYTPLIRISTPLPYFDRVAYTVQLTGIKVNGKLLPIPKSVLVPDHTGAGQTMVDSGTQ 308
Query: 317 LTY-LPPAYA---SKLLSVMSSMIAAQP-----VEGPYDLCYSISS-------RPRFPEV 360
T+ L P Y S L+ + ++ +G DLCY IS R P V
Sbjct: 309 FTFLLGPVYTALRSHFLNRTNGILTVYEDPDFVFQGTMDLCYRISPVRIRSGILHRLPTV 368
Query: 361 TIHFRDADVKLSTSNVFMNI------SEDLVCSVFNARD----DIPLYGNIMQTNFLIGY 410
++ F A++ +S + + ++ + C F D + + G+ Q N I +
Sbjct: 369 SLVFEGAEIAVSGQPLLYRVPHLTVGNDSVYCFTFGNSDLMGMEAYVIGHHHQQNMWIEF 428
Query: 411 DIEGRTVSFKPTDC 424
D++ + P +C
Sbjct: 429 DLQRSRIGLAPVEC 442
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Embryo-specific aspartic protease that limits programmed cell death during reproductive development. Possesses peptidase activity toward casein in vitro. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 3 EC: . EC: - |
| >sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 123/462 (26%), Positives = 191/462 (41%), Gaps = 55/462 (11%)
Query: 8 AFILFFLCLSVLSPAEAQTVGFSVELIHR---------DSPKSPFYNPNETPYQRLRNAL 58
AF+LF C+ L+ E FS LIHR +P S PN+ + R L
Sbjct: 6 AFLLF--CVLFLATEETLASLFSSRLIHRFSDEGRASIKTPSSSDSLPNKQSLEYYR-LL 62
Query: 59 NRSANRLRHFNKNSSVSSSKVSQADIIPNVGE-----YLIRISIGTPPVEILAVADTGSD 113
S R + N + V S S+ + G + I IGTP V L DTGS+
Sbjct: 63 AESDFRRQRMNLGAKVQSLVPSEGSKTISSGNDFGWLHYTWIDIGTPSVSFLVALDTGSN 122
Query: 114 LIWTQCQ--PCPP------SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEG 165
L+W C C P S +D ++P SST K CS C D S +
Sbjct: 123 LLWIPCNCVQCAPLTSTYYSSLATKDLNEYNPSSSSTSKVFLCSHKLCD-SASDCESPKE 181
Query: 166 NCRYSVSYGDDSFSNGDLATETVTVGS-------TSGQAVALPEIVFGCGTKNGGKF--N 216
C Y+V+Y + S+ L E + + +G + +V GCG K G +
Sbjct: 182 QCPYTVNYLSGNTSSSGLLVEDILHLTYNTNNRLMNGSSSVKARVVIGCGKKQSGDYLDG 241
Query: 217 SKTDGIVGLGGGDASLISQMKTT--IAGKFSYCLVQQSSTKINFGTNGIVSGSGVVSTPL 274
DG++GLG + S+ S + + FS C ++ S +I FG G S STP
Sbjct: 242 VAPDGLMGLGPAEISVPSFLSKAGLMRNSFSLCFDEEDSGRIYFGDMG---PSIQQSTPF 298
Query: 275 LA--KNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVM 332
L N + Y + ++A +G+ L S + IDSG + TYLP K+ +
Sbjct: 299 LQLDNNKYSGYIVGVEACCIGNSCLKQTSFTT-----FIDSGQSFTYLPEEIYRKVALEI 353
Query: 333 SSMIAA--QPVEG-PYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFM-NISEDLVCSV 388
I A + EG ++ CY S+ P+ P + + F + + +F+ S+ LV
Sbjct: 354 DRHINATSKNFEGVSWEYCYESSAEPKVPAIKLKFSHNNTFVIHKPLFVFQQSQGLVQFC 413
Query: 389 F----NARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426
+ ++ I G + + +D E + + P+ C +
Sbjct: 414 LPISPSGQEGIGSIGQNYMRGYRMVFDRENMKLGWSPSKCQE 455
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 3 EC: . EC: - |
| >sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 156/380 (41%), Gaps = 57/380 (15%)
Query: 88 VGEYLIRISIGTPPVEILAVADTGSDLIWTQCQ-PCPPSQCYKQDNPLFDPQRSSTYKYL 146
+G + + ++IG P DTGS L W QC PC C K + L+ P+ K
Sbjct: 35 IGHFFVTMNIGDPAKPYFLDIDTGSTLTWLQCDYPC--INCNKVPHGLYKPELKYAVK-- 90
Query: 147 SCSSSQCAPPIKD-----SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALP 201
C+ +CA D C + C Y + Y S S G L ++ ++ +++G
Sbjct: 91 -CTEQRCADLYADLRKPMKCGPKNQCHYGIQYVGGS-SIGVLIVDSFSLPASNGTNPT-- 146
Query: 202 EIVFGCGT---KNGGKFNSKTDGIVGLGGGDASLISQMKT---TIAGKFSYCLVQQSSTK 255
I FGCG KN + +GI+GLG G +L+SQ+K+ +C+ +
Sbjct: 147 SIAFGCGYNQGKNNHNVPTPVNGILGLGRGKVTLLSQLKSQGVITKHVLGHCISSKGKGF 206
Query: 256 INFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGT 315
+ FG + V SGV +P+ YS + + S +++ DSG
Sbjct: 207 LFFG-DAKVPTSGVTWSPM--NREHKHYSPRQGTLQFNSNSKPI---SAAPMEVIFDSGA 260
Query: 316 TLTY--LPPAYASKLLSVMSSMIAAQ--------PVEGPYDLCYSISSRPR--------F 357
T TY L P +A+ LSV+ S ++ + + +C+ + R F
Sbjct: 261 TYTYFALQPYHAT--LSVVKSTLSKECKFLTEVKEKDRALTVCWKGKDKIRTIDEVKKCF 318
Query: 358 PEVTIHFRDADVKLSTS---NVFMNIS-EDLVC-SVFNARDDIP------LYGNIMQTNF 406
+++ F D D K + ++ IS E VC + + + P L G I +
Sbjct: 319 RSLSLKFADGDKKATLEIPPEHYLIISQEGHVCLGILDGSKEHPSLAGTNLIGGITMLDQ 378
Query: 407 LIGYDIEGRTVSFKPTDCSK 426
++ YD E + + C +
Sbjct: 379 MVIYDSERSLLGWVNYQCDR 398
|
Possesses protease activity in vitro. Oryza sativa subsp. indica (taxid: 39946) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| 255566010 | 439 | Aspartic proteinase nepenthesin-1 precur | 0.985 | 0.958 | 0.534 | 1e-118 | |
| 224126551 | 440 | predicted protein [Populus trichocarpa] | 0.962 | 0.934 | 0.495 | 1e-111 | |
| 297805038 | 440 | predicted protein [Arabidopsis lyrata su | 0.948 | 0.920 | 0.546 | 1e-111 | |
| 224130878 | 440 | predicted protein [Populus trichocarpa] | 0.981 | 0.952 | 0.485 | 1e-110 | |
| 15242803 | 437 | aspartyl protease family protein [Arabid | 0.925 | 0.903 | 0.530 | 1e-108 | |
| 116831531 | 438 | unknown [Arabidopsis thaliana] | 0.925 | 0.901 | 0.530 | 1e-108 | |
| 15217764 | 431 | aspartyl protease-like protein [Arabidop | 0.922 | 0.914 | 0.523 | 1e-107 | |
| 225427550 | 439 | PREDICTED: probable aspartic protease At | 0.985 | 0.958 | 0.472 | 1e-106 | |
| 449454654 | 434 | PREDICTED: probable aspartic protease At | 0.955 | 0.940 | 0.491 | 1e-106 | |
| 224074591 | 443 | predicted protein [Populus trichocarpa] | 0.978 | 0.943 | 0.483 | 1e-105 |
| >gi|255566010|ref|XP_002523993.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223536720|gb|EEF38361.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/443 (53%), Positives = 315/443 (71%), Gaps = 22/443 (4%)
Query: 1 METFLSCAFILFFLCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNR 60
M +S I+ + L P +A GF+VELI+RDSPKSPFYNP ETP QR+ +A+ R
Sbjct: 1 MAASVSLLAIVTLIFSGTLVPIDAAKDGFTVELINRDSPKSPFYNPRETPTQRIVSAVRR 60
Query: 61 SANRLRHFN--KNSSVSSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQ 118
S +R+ HF+ KNS + + +Q+++I N GEYL++ S+GTP +ILA+ADTGSDLIWTQ
Sbjct: 61 SMSRVHHFSPTKNSDIFT-DTAQSEMISNQGEYLMKFSLGTPAFDILAIADTGSDLIWTQ 119
Query: 119 CQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD--SCSAEGN--CRYSVSYG 174
C+PC QCY+QD PLFDP+ SSTY+ +SCS+ QC +K+ SCS EGN C YS SYG
Sbjct: 120 CKPC--DQCYEQDAPLFDPKSSSTYRDISCSTKQC-DLLKEGASCSGEGNKTCHYSYSYG 176
Query: 175 DDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLIS 234
D SF++G++A +T+T+GSTSG+ V LP+ + GCG NGG F K GIVGLGGG SLIS
Sbjct: 177 DRSFTSGNVAADTITLGSTSGRPVLLPKAIIGCGHNNGGSFTEKGSGIVGLGGGPISLIS 236
Query: 235 QMKTTIAGKFSYCLVQQS-----STKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDA 289
Q+ +TI GKFSYCLV S S+K+NFG+NGIVSG GV STPL++K+P TFY LTL+A
Sbjct: 237 QLGSTIDGKFSYCLVPLSSNATNSSKLNFGSNGIVSGGGVQSTPLISKDPDTFYFLTLEA 296
Query: 290 ISVGDQRLGVISGSNPG---GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP-- 344
+SVG +R+ GS+ G G+I+IDSGTTLT P + S+L S + +A PVE P
Sbjct: 297 VSVGSERIK-FPGSSFGTSEGNIIIDSGTTLTLFPEDFFSELSSAVQDAVAGTPVEDPSG 355
Query: 345 -YDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQ 403
LCYSI + +FP +T HF ADVKL+ N F+ +S+ ++C FN + ++GN+ Q
Sbjct: 356 ILSLCYSIDADLKFPSITAHFDGADVKLNPLNTFVQVSDTVLCFAFNPINSGAIFGNLAQ 415
Query: 404 TNFLIGYDIEGRTVSFKPTDCSK 426
NFL+GYD+EG+TVSFKPTDC++
Sbjct: 416 MNFLVGYDLEGKTVSFKPTDCTQ 438
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126551|ref|XP_002329582.1| predicted protein [Populus trichocarpa] gi|222870291|gb|EEF07422.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/426 (49%), Positives = 285/426 (66%), Gaps = 15/426 (3%)
Query: 14 LCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSS 73
LC++ A GF+ EL+HRDSPKSP YN +T QR A+ RS +R+ HF + ++
Sbjct: 16 LCVASFGCIYAHNAGFTTELVHRDSPKSPLYNSQQTHLQRWNKAMRRSVSRVHHFQRTAA 75
Query: 74 VSSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNP 133
S K +++II N GEYL+ +S+GTPP EILA+ADTGSDLIWTQC PC +CYKQ P
Sbjct: 76 TVSPKEVESEIIANGGEYLMSLSLGTPPFEILAIADTGSDLIWTQCTPC--DKCYKQIAP 133
Query: 134 LFDPQRSSTYKYLSCSSSQCAPPIK-DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGS 192
LFDP+ S TY+ LSC + QC + SCS+E C+YS YGD SF+NG+LA +TVT+ S
Sbjct: 134 LFDPKSSKTYRDLSCDTRQCQNLGESSSCSSEQLCQYSYYYGDRSFTNGNLAVDTVTLPS 193
Query: 193 TSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQS 252
T+G V P+ V GCG +N G F+ K GI+GLGGG SLISQM +++ GKFSYCLV S
Sbjct: 194 TNGGPVYFPKTVIGCGRRNNGTFDKKDSGIIGLGGGPMSLISQMGSSVGGKFSYCLVPFS 253
Query: 253 ------STKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRL--GVISGSN 304
S+K++FG N +VSGSGV STPL++KNP TFY LTL+A+SVGD+++ G S
Sbjct: 254 SESAGNSSKLHFGRNAVVSGSGVQSTPLISKNPDTFYYLTLEAMSVGDKKIEFGGSSFGG 313
Query: 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMI----AAQPVEGPYDLCYSISSRPRFPEV 360
G+I+IDSGT+LT P + ++ + + + + Q G CY + + P +
Sbjct: 314 SEGNIIIDSGTSLTLFPVNFFTEFATAVENAVINGERTQDASGLLSHCYRPTPDLKVPVI 373
Query: 361 TIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFK 420
T HF ADV L T N F+ IS+D++C FN+ ++GN+ Q NFLIGYDI+G++VSFK
Sbjct: 374 TAHFNGADVVLQTLNTFILISDDVLCLAFNSTQSGAIFGNVAQMNFLIGYDIQGKSVSFK 433
Query: 421 PTDCSK 426
PTDC++
Sbjct: 434 PTDCTQ 439
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805038|ref|XP_002870403.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316239|gb|EFH46662.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 231/423 (54%), Positives = 292/423 (69%), Gaps = 18/423 (4%)
Query: 19 LSPAEAQT-VGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSS 77
LS A A++ +GF+ +LIHRDSPKSPFYNP ET QRLRNA++RS +R+ HF S +S
Sbjct: 20 LSNANAKSKLGFTADLIHRDSPKSPFYNPTETSSQRLRNAIHRSVSRVFHFTDISQKDAS 79
Query: 78 -KVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFD 136
Q D+ N GEYL+ IS+GTPP I+A+ADTGSDL+WTQC+PC CY Q +PLFD
Sbjct: 80 DNAPQIDLTSNSGEYLMNISLGTPPFPIMAIADTGSDLLWTQCKPC--DDCYTQVDPLFD 137
Query: 137 PQRSSTYKYLSCSSSQC-APPIKDSCSAEGN-CRYSVSYGDDSFSNGDLATETVTVGSTS 194
P+ SSTYK +SCSSSQC A + SCS E N C YS SYGD S++ G++A +T+T+GST
Sbjct: 138 PKASSTYKDVSCSSSQCTALENQASCSTEDNTCSYSTSYGDRSYTKGNIAVDTLTLGSTD 197
Query: 195 GQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSS- 253
+ V L I+ GCG N G FN K GIVGLGGG SLI+Q+ +I GKFSYCLV +S
Sbjct: 198 TRPVQLKNIIIGCGHNNAGTFNKKGSGIVGLGGGAVSLITQLGDSIDGKFSYCLVPLTSE 257
Query: 254 ----TKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRL---GVISGSNPG 306
+KINFGTN +VSG+GVVSTPL+AK+ +TFY LTL +ISVG + + G SGS
Sbjct: 258 NDRTSKINFGTNAVVSGTGVVSTPLIAKSQETFYYLTLKSISVGSKEVQYPGSDSGSGE- 316
Query: 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSISSRPRFPEVTIH 363
G+I+IDSGTTLT LP + S+L ++S I A+ + P LCYS + + P +T+H
Sbjct: 317 GNIIIDSGTTLTLLPTEFYSELEDAVASSIDAEKKQDPQTGLSLCYSATGDLKVPAITMH 376
Query: 364 FRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423
F ADV L SN F+ ISEDLVC F +YGN+ Q NFL+GYD +TVSFKPTD
Sbjct: 377 FDGADVNLKPSNCFVQISEDLVCFAFRGSPSFSIYGNVAQMNFLVGYDTVSKTVSFKPTD 436
Query: 424 CSK 426
C+K
Sbjct: 437 CAK 439
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130878|ref|XP_002320947.1| predicted protein [Populus trichocarpa] gi|222861720|gb|EEE99262.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/437 (48%), Positives = 299/437 (68%), Gaps = 18/437 (4%)
Query: 5 LSCAFILFFLCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANR 64
LS A + LC+S A+ VGF+V+LIHRDSP SPFYN ET QR+ NAL RS +R
Sbjct: 8 LSFALAIALLCVSGFGCIYARKVGFTVDLIHRDSPLSPFYNSEETDLQRINNALRRSISR 67
Query: 65 LRHFNKNSSVS-SSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP 123
+ HF+ ++ S S K +++D+ N GEYL+ +S+GTPP +I+ +ADTGSDLIWTQC+PC
Sbjct: 68 VHHFDPIAAASVSPKAAESDVTSNRGEYLMSLSLGTPPFKIMGIADTGSDLIWTQCKPC- 126
Query: 124 PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGN-CRYSVSYGDDSFSNGD 182
+CYKQ +PLFDP+ S TY+ SC + QC+ + +CS GN C+Y SYGD S++ G+
Sbjct: 127 -ERCYKQVDPLFDPKSSKTYRDFSCDARQCSLLDQSTCS--GNICQYQYSYGDRSYTMGN 183
Query: 183 LATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAG 242
+A++T+T+ ST+G V+ P+ V GCG +N G F+ K GIVGLG G SLISQM +++ G
Sbjct: 184 VASDTITLDSTTGSPVSFPKTVIGCGHENDGTFSDKGSGIVGLGAGPLSLISQMGSSVGG 243
Query: 243 KFSYCLVQQS-----STKINFGTNGIVSGSGVVSTPLL-AKNPKTFYSLTLDAISVGDQR 296
KFSYCLV S S+K+NFG+N +VSG GV STPLL ++ +FY LTL+A+SVG++R
Sbjct: 244 KFSYCLVPLSSRAGNSSKLNFGSNAVVSGPGVQSTPLLSSETMSSFYFLTLEAMSVGNER 303
Query: 297 L--GVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSI 351
+ G S G+I+IDSGTTLT +P + S L + + + + + E P +CYS
Sbjct: 304 IKFGDSSLGTGEGNIIIDSGTTLTIVPDDFFSNLSTAVGNQVEGRRAEDPSGFLSVCYSA 363
Query: 352 SSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVF-NARDDIPLYGNIMQTNFLIGY 410
+S + P +T HF ADVKL N F+ +S+D+VC F + I +YGN+ Q NFL+ Y
Sbjct: 364 TSDLKVPAITAHFTGADVKLKPINTFVQVSDDVVCLAFASTTSGISIYGNVAQMNFLVEY 423
Query: 411 DIEGRTVSFKPTDCSKQ 427
+I+G+++SFKPTDC+K+
Sbjct: 424 NIQGKSLSFKPTDCTKK 440
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242803|ref|NP_198319.1| aspartyl protease family protein [Arabidopsis thaliana] gi|75130158|sp|Q6XBF8.1|CDR1_ARATH RecName: Full=Aspartic proteinase CDR1; AltName: Full=Protein CONSTITUTIVE DISEASE RESISTANCE 1; Flags: Precursor gi|37935737|gb|AAP72988.1| CDR1 [Arabidopsis thaliana] gi|91806924|gb|ABE66189.1| aspartyl protease family protein [Arabidopsis thaliana] gi|109946613|gb|ABG48485.1| At5g33340 [Arabidopsis thaliana] gi|332006513|gb|AED93896.1| aspartyl protease family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/413 (53%), Positives = 285/413 (69%), Gaps = 18/413 (4%)
Query: 27 VGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQADIIP 86
+GF+ +LIHRDSPKSPFYNP ET QRLRNA++RS NR+ HF + + ++ D+
Sbjct: 29 LGFTADLIHRDSPKSPFYNPMETSSQRLRNAIHRSVNRVFHFTEKDNTPQPQI---DLTS 85
Query: 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYL 146
N GEYL+ +SIGTPP I+A+ADTGSDL+WTQC PC CY Q +PLFDP+ SSTYK +
Sbjct: 86 NSGEYLMNVSIGTPPFPIMAIADTGSDLLWTQCAPC--DDCYTQVDPLFDPKTSSTYKDV 143
Query: 147 SCSSSQC-APPIKDSCSAEGN-CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
SCSSSQC A + SCS N C YS+SYGD+S++ G++A +T+T+GS+ + + L I+
Sbjct: 144 SCSSSQCTALENQASCSTNDNTCSYSLSYGDNSYTKGNIAVDTLTLGSSDTRPMQLKNII 203
Query: 205 FGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLV-----QQSSTKINFG 259
GCG N G FN K GIVGLGGG SLI Q+ +I GKFSYCLV + ++KINFG
Sbjct: 204 IGCGHNNAGTFNKKGSGIVGLGGGPVSLIKQLGDSIDGKFSYCLVPLTSKKDQTSKINFG 263
Query: 260 TNGIVSGSGVVSTPLLAK-NPKTFYSLTLDAISVGDQRL--GVISGSNPGGDIVIDSGTT 316
TN IVSGSGVVSTPL+AK + +TFY LTL +ISVG +++ + G+I+IDSGTT
Sbjct: 264 TNAIVSGSGVVSTPLIAKASQETFYYLTLKSISVGSKQIQYSGSDSESSEGNIIIDSGTT 323
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSISSRPRFPEVTIHFRDADVKLST 373
LT LP + S+L ++S I A+ + P LCYS + + P +T+HF ADVKL +
Sbjct: 324 LTLLPTEFYSELEDAVASSIDAEKKQDPQSGLSLCYSATGDLKVPVITMHFDGADVKLDS 383
Query: 374 SNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426
SN F+ +SEDLVC F +YGN+ Q NFL+GYD +TVSFKPTDC+K
Sbjct: 384 SNAFVQVSEDLVCFAFRGSPSFSIYGNVAQMNFLVGYDTVSKTVSFKPTDCAK 436
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116831531|gb|ABK28718.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/413 (53%), Positives = 285/413 (69%), Gaps = 18/413 (4%)
Query: 27 VGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQADIIP 86
+GF+ +LIHRDSPKSPFYNP ET QRLRNA++RS NR+ HF + + ++ D+
Sbjct: 29 LGFTADLIHRDSPKSPFYNPMETSSQRLRNAIHRSVNRVFHFTEKDNTPQPQI---DLTS 85
Query: 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYL 146
N GEYL+ +SIGTPP I+A+ADTGSDL+WTQC PC CY Q +PLFDP+ SSTYK +
Sbjct: 86 NSGEYLMNVSIGTPPFPIMAIADTGSDLLWTQCAPC--DDCYTQVDPLFDPKTSSTYKDV 143
Query: 147 SCSSSQC-APPIKDSCSAEGN-CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
SCSSSQC A + SCS N C YS+SYGD+S++ G++A +T+T+GS+ + + L I+
Sbjct: 144 SCSSSQCTALENQASCSTNDNTCSYSLSYGDNSYTKGNIAVDTLTLGSSDTRPMQLKNII 203
Query: 205 FGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLV-----QQSSTKINFG 259
GCG N G FN K GIVGLGGG SLI Q+ +I GKFSYCLV + ++KINFG
Sbjct: 204 IGCGHNNAGTFNKKGSGIVGLGGGPVSLIKQLGDSIDGKFSYCLVPLTSKKDQTSKINFG 263
Query: 260 TNGIVSGSGVVSTPLLAK-NPKTFYSLTLDAISVGDQRL--GVISGSNPGGDIVIDSGTT 316
TN IVSGSGVVSTPL+AK + +TFY LTL +ISVG +++ + G+I+IDSGTT
Sbjct: 264 TNAIVSGSGVVSTPLIAKASQETFYYLTLKSISVGSKQIQYSGSDSESSEGNIIIDSGTT 323
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSISSRPRFPEVTIHFRDADVKLST 373
LT LP + S+L ++S I A+ + P LCYS + + P +T+HF ADVKL +
Sbjct: 324 LTLLPTEFYSELEDAVASSIDAEKKQDPQSGLSLCYSATGDLKVPVITMHFDGADVKLDS 383
Query: 374 SNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426
SN F+ +SEDLVC F +YGN+ Q NFL+GYD +TVSFKPTDC+K
Sbjct: 384 SNAFVQVSEDLVCFAFRGSPSFSIYGNVAQMNFLVGYDTVSKTVSFKPTDCAK 436
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15217764|ref|NP_176663.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|5042418|gb|AAD38257.1|AC006193_13 Hypothetical Protein [Arabidopsis thaliana] gi|332196174|gb|AEE34295.1| aspartyl protease-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 215/411 (52%), Positives = 287/411 (69%), Gaps = 17/411 (4%)
Query: 28 GFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQADIIPN 87
GF+++LIHRDSPKSPFYN ET QR+RNA+ RSA F+ + + +S Q+ I N
Sbjct: 25 GFTIDLIHRDSPKSPFYNSAETSSQRMRNAIRRSARSTLQFSNDDASPNSP--QSFITSN 82
Query: 88 VGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLS 147
GEYL+ ISIGTPPV ILA+ADTGSDLIWTQC PC CY+Q +PLFDP+ SSTY+ +S
Sbjct: 83 RGEYLMNISIGTPPVPILAIADTGSDLIWTQCNPC--EDCYQQTSPLFDPKESSTYRKVS 140
Query: 148 CSSSQCAPPIKDSCSAEGN-CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFG 206
CSSSQC SCS + N C Y+++YGD+S++ GD+A +TVT+GS+ + V+L ++ G
Sbjct: 141 CSSSQCRALEDASCSTDENTCSYTITYGDNSYTKGDVAVDTVTMGSSGRRPVSLRNMIIG 200
Query: 207 CGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSS-----TKINFGTN 261
CG +N G F+ GI+GLGGG SL+SQ++ +I GKFSYCLV +S +KINFGTN
Sbjct: 201 CGHENTGTFDPAGSGIIGLGGGSTSLVSQLRKSINGKFSYCLVPFTSETGLTSKINFGTN 260
Query: 262 GIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRL---GVISGSNPGGDIVIDSGTTLT 318
GIVSG GVVST ++ K+P T+Y L L+AISVG +++ I G+ G+IVIDSGTTLT
Sbjct: 261 GIVSGDGVVSTSMVKKDPATYYFLNLEAISVGSKKIQFTSTIFGTGE-GNIVIDSGTTLT 319
Query: 319 YLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSISSRPRFPEVTIHFRDADVKLSTSN 375
LP + +L SV++S I A+ V+ P LCY SS + P++T+HF+ DVKL N
Sbjct: 320 LLPSNFYYELESVVASTIKAERVQDPDGILSLCYRDSSSFKVPDITVHFKGGDVKLGNLN 379
Query: 376 VFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426
F+ +SED+ C F A + + ++GN+ Q NFL+GYD TVSFK TDCS+
Sbjct: 380 TFVAVSEDVSCFAFAANEQLTIFGNLAQMNFLVGYDTVSGTVSFKKTDCSQ 430
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225427550|ref|XP_002266461.1| PREDICTED: probable aspartic protease At2g35615 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/440 (47%), Positives = 284/440 (64%), Gaps = 19/440 (4%)
Query: 1 METFLSCAFILFFLCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNR 60
++ F + + F L L A A+ GFSV+LIHRDSP SPF++P++T +RL +A R
Sbjct: 6 VKIFFNVVVVGFLFQL--LEVALARGGGFSVDLIHRDSPHSPFFDPSKTQAERLTDAFRR 63
Query: 61 SANRLRHFNKNSSVSSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQ 120
S +R+ F + S Q+ I+P+ GEYL+ + IGTPPV ++A+ DTGSDL WTQC+
Sbjct: 64 SVSRVGRFRPTAMTSDG--IQSRIVPSAGEYLMNLYIGTPPVPVIAIVDTGSDLTWTQCR 121
Query: 121 PCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD-SCSAEGNCRYSVSYGDDSFS 179
PC + CYKQ PLFDP+ SSTY+ SC +S C KD SCS E C + SY D SF+
Sbjct: 122 PC--THCYKQVVPLFDPKNSSTYRDSSCGTSFCLALGKDRSCSKEKKCTFRYSYADGSFT 179
Query: 180 NGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTT 239
G+LA+ET+TV ST+G+ V+ P FGCG +GG F+ + GIVGLGGG+ SLISQ+K+T
Sbjct: 180 GGNLASETLTVDSTAGKPVSFPGFAFGCGHSSGGIFDKSSSGIVGLGGGELSLISQLKST 239
Query: 240 IAGKFSYCLVQQS-----STKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGD 294
I G FSYCL+ S S++INFG +G VSG G VSTPL+ K+P TFY LTL+ ISVG
Sbjct: 240 INGLFSYCLLPVSTDSSISSRINFGASGRVSGYGTVSTPLVQKSPDTFYYLTLEGISVGK 299
Query: 295 QRLGVISGSNPG----GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP---YDL 347
+RL S G+I++DSGTT T+LP + SKL +++ I + V P + L
Sbjct: 300 KRLPYKGYSKKTEVEEGNIIVDSGTTYTFLPQEFYSKLEKSVANSIKGKRVRDPNGIFSL 359
Query: 348 CYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFL 407
CY+ ++ P +T HF+DA+V+L N FM + EDLVC DI + GN+ Q NFL
Sbjct: 360 CYNTTAEINAPIITAHFKDANVELQPLNTFMRMQEDLVCFTVAPTSDIGVLGNLAQVNFL 419
Query: 408 IGYDIEGRTVSFKPTDCSKQ 427
+G+D+ + VSFK DC++
Sbjct: 420 VGFDLRKKRVSFKAADCTQH 439
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454654|ref|XP_004145069.1| PREDICTED: probable aspartic protease At2g35615-like [Cucumis sativus] gi|449470632|ref|XP_004153020.1| PREDICTED: probable aspartic protease At2g35615-like [Cucumis sativus] gi|449499016|ref|XP_004160697.1| PREDICTED: probable aspartic protease At2g35615-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/435 (49%), Positives = 282/435 (64%), Gaps = 27/435 (6%)
Query: 9 FILFFL--CLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLR 66
F L FL SV S A+ GF+VELIHRDSPKSP YN +ET + R+ NAL RS++R
Sbjct: 5 FSLLFLISTASVFSAVTARDYGFTVELIHRDSPKSPMYNSSETHFDRIVNALRRSSHR-- 62
Query: 67 HFNKNSSVSSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQ 126
N+ V S ++A I N GEYL+ IS+GTPP I+AVADTGSD+IWTQC+PC S
Sbjct: 63 ----NTVVLESDTAEAPIFNNGGEYLVEISVGTPPFSIVAVADTGSDVIWTQCKPC--SN 116
Query: 127 CYKQDNPLFDPQRSSTYKYLSCSSSQCA-PPIKDSCSAEGNCRYSVSYGDDSFSNGDLAT 185
CY+Q+ P+FDP +S+TYK ++CSS C+ SCS + C YS++YGDDS S G+LA
Sbjct: 117 CYQQNAPMFDPSKSTTYKNVACSSPVCSYSGDGSSCSDDSECLYSIAYGDDSHSQGNLAV 176
Query: 186 ETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFS 245
+TVT+ STSG+ VA P V GCG N G FN+ GIVGLG G ASL++Q+ GKFS
Sbjct: 177 DTVTMQSTSGRPVAFPRTVIGCGHDNAGTFNANVSGIVGLGRGPASLVTQLGPATGGKFS 236
Query: 246 YCLV------QQSSTKINFGTNGIVSGSGVVSTPLLAKNP-KTFYSLTLDAISVGDQRLG 298
YCL+ STK+NFG+N VSGSG VSTP+ + KTFYSL L+A+SVGD +
Sbjct: 237 YCLIPIGTGSTNDSTKLNFGSNANVSGSGTVSTPIYSSAQYKTFYSLKLEAVSVGDTKFN 296
Query: 299 VISGSNPGG---DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSIS 352
G++ G +I+IDSGTTLTYLP A + S +S ++ + P D C++ +
Sbjct: 297 FPEGASKLGGESNIIIDSGTTLTYLPSALLNSFGSAISQSMSLPHAQDPSEFLDYCFATT 356
Query: 353 SRP-RFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNA--RDDIPLYGNIMQTNFLIG 409
+ P VT+HF ADV L N+F+ +S+D +C F + D+I +YGNI Q+NFL+G
Sbjct: 357 TDDYEMPPVTMHFEGADVPLQRENLFVRLSDDTICLAFGSFPDDNIFIYGNIAQSNFLVG 416
Query: 410 YDIEGRTVSFKPTDC 424
YDI+ VSF+P C
Sbjct: 417 YDIKNLAVSFQPAHC 431
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074591|ref|XP_002304395.1| predicted protein [Populus trichocarpa] gi|222841827|gb|EEE79374.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/443 (48%), Positives = 297/443 (67%), Gaps = 25/443 (5%)
Query: 6 SCAFILFFLCLSVLSP------AEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALN 59
S +F+ +C LSP A + GFS+ LIHRDSP SP YNPN T + RLRNA +
Sbjct: 5 SFSFVTIVICFISLSPFPLLGAAASPDPGFSLNLIHRDSPLSPLYNPNHTDFDRLRNAFS 64
Query: 60 RSANRLRHFNKNSSVSSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQC 119
RS +R+ F K +V + Q D++PN GEY +++SIGTP VE++ +ADTGSDL W QC
Sbjct: 65 RSISRVNVF-KTKAVDINSF-QNDLVPNGGEYFMKMSIGTPLVEVIVIADTGSDLTWVQC 122
Query: 120 QPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQC-APPIKD-SCSAEGN-CRYSVSYGDD 176
PC P CY+Q +PLFDP RSS+Y+++ C S C A + + +C+ + N C Y SYGD
Sbjct: 123 LPCDP--CYRQKSPLFDPSRSSSYRHMLCGSRFCNALDVSEQACTMDTNICEYHYSYGDK 180
Query: 177 SFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQM 236
S++NG+LATE T+GSTS + V L IVFGCGT NGG F+ GIVGLGGG SL+SQ+
Sbjct: 181 SYTNGNLATEKFTIGSTSSRPVHLSPIVFGCGTGNGGTFDELGSGIVGLGGGALSLVSQL 240
Query: 237 KTTIAGKFSYCLV---QQS--STKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAIS 291
+ I GKFSYCLV +QS ++KI FGT+ ++SG VVSTPL++K P T+Y +TL+AIS
Sbjct: 241 SSIIKGKFSYCLVPLSEQSNVTSKIKFGTDSVISGPQVVSTPLVSKQPDTYYYVTLEAIS 300
Query: 292 VGDQRL----GVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP--- 344
VG++RL G+++G+ G+++IDSGTTLT+L + ++L V+ + A+ V P
Sbjct: 301 VGNKRLPYTNGLLNGNVEKGNVIIDSGTTLTFLDSEFFTELERVLEETVKAERVSDPRGL 360
Query: 345 YDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQT 404
+ +C+ + P + +HF DADVKL N F+ EDL+C + + I ++GN+ Q
Sbjct: 361 FSVCFRSAGDIDLPVIAVHFNDADVKLQPLNTFVKADEDLLCFTMISSNQIGIFGNLAQM 420
Query: 405 NFLIGYDIEGRTVSFKPTDCSKQ 427
+FL+GYD+E RTVSFKPTDC+K
Sbjct: 421 DFLVGYDLEKRTVSFKPTDCTKH 443
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| TAIR|locus:2145954 | 437 | CDR1 "CONSTITUTIVE DISEASE RES | 0.962 | 0.940 | 0.491 | 4.4e-100 | |
| TAIR|locus:2010786 | 431 | AT1G64830 [Arabidopsis thalian | 0.969 | 0.960 | 0.472 | 7.4e-98 | |
| TAIR|locus:2206184 | 445 | AT1G31450 [Arabidopsis thalian | 0.676 | 0.649 | 0.419 | 4.4e-90 | |
| TAIR|locus:2046228 | 395 | AT2G28040 [Arabidopsis thalian | 0.770 | 0.832 | 0.410 | 1.4e-64 | |
| TAIR|locus:2062809 | 756 | AT2G28220 [Arabidopsis thalian | 0.768 | 0.433 | 0.397 | 6.1e-64 | |
| TAIR|locus:2046158 | 392 | AT2G28030 [Arabidopsis thalian | 0.765 | 0.834 | 0.401 | 3.3e-63 | |
| TAIR|locus:504955954 | 447 | AT2G35615 [Arabidopsis thalian | 0.695 | 0.664 | 0.438 | 4.8e-62 | |
| TAIR|locus:2057831 | 396 | AT2G28010 [Arabidopsis thalian | 0.686 | 0.739 | 0.387 | 2e-51 | |
| TAIR|locus:2183715 | 464 | AT5G10760 [Arabidopsis thalian | 0.758 | 0.698 | 0.360 | 6.7e-49 | |
| TAIR|locus:2035297 | 485 | AT1G01300 [Arabidopsis thalian | 0.761 | 0.670 | 0.354 | 6.2e-46 |
| TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
Identities = 214/435 (49%), Positives = 274/435 (62%)
Query: 10 ILFFLCL--SV-LSPAEAQT-VGFSVELIHRDSPKSPFYNPNETPYQXXXXXXXXXXXXX 65
+L LCL S+ LS A A+ +GF+ +LIHRDSPKSPFYNP ET Q
Sbjct: 8 VLLSLCLLSSLFLSNANAKPKLGFTADLIHRDSPKSPFYNPMETSSQRLRNAIHRSVNRV 67
Query: 66 XHFXXXXXXXXXXXXQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPS 125
HF Q D+ N GEYL+ +SIGTPP I+A+ADTGSDL+WTQC PC
Sbjct: 68 FHFTEKDNTPQP---QIDLTSNSGEYLMNVSIGTPPFPIMAIADTGSDLLWTQCAPC--D 122
Query: 126 QCYKQDNPLFDPQRXXXXXXXXXXXXQC-APPIKDSCSAEGN-CRYSVSYGDDSFSNGDL 183
CY Q +PLFDP+ QC A + SCS N C YS+SYGD+S++ G++
Sbjct: 123 DCYTQVDPLFDPKTSSTYKDVSCSSSQCTALENQASCSTNDNTCSYSLSYGDNSYTKGNI 182
Query: 184 ATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGK 243
A +T+T+GS+ + + L I+ GCG N G FN K GIVGLGGG SLI Q+ +I GK
Sbjct: 183 AVDTLTLGSSDTRPMQLKNIIIGCGHNNAGTFNKKGSGIVGLGGGPVSLIKQLGDSIDGK 242
Query: 244 FSYCLVQQSS-----TKINFGTNGIVSGSGVVSTPLLAK-NPKTFYSLTLDAISVGDQRL 297
FSYCLV +S +KINFGTN IVSGSGVVSTPL+AK + +TFY LTL +ISVG +++
Sbjct: 243 FSYCLVPLTSKKDQTSKINFGTNAIVSGSGVVSTPLIAKASQETFYYLTLKSISVGSKQI 302
Query: 298 GVISGSNPG---GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYD---LCYSI 351
SGS+ G+I+IDSGTTLT LP + S+L ++S I A+ + P LCYS
Sbjct: 303 QY-SGSDSESSEGNIIIDSGTTLTLLPTEFYSELEDAVASSIDAEKKQDPQSGLSLCYSA 361
Query: 352 SSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYD 411
+ + P +T+HF ADVKL +SN F+ +SEDLVC F +YGN+ Q NFL+GYD
Sbjct: 362 TGDLKVPVITMHFDGADVKLDSSNAFVQVSEDLVCFAFRGSPSFSIYGNVAQMNFLVGYD 421
Query: 412 IEGRTVSFKPTDCSK 426
+TVSFKPTDC+K
Sbjct: 422 TVSKTVSFKPTDCAK 436
|
|
| TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
Identities = 205/434 (47%), Positives = 272/434 (62%)
Query: 8 AFILF--FLCLSVLSPAEAQTV-GFSVELIHRDSPKSPFYNPNETPYQXXXXXXXXXXXX 64
A ++F L L +LS A GF+++LIHRDSPKSPFYN ET Q
Sbjct: 2 ASLIFATLLSLLLLSNVNAYPKDGFTIDLIHRDSPKSPFYNSAETSSQRMRNAIRRSARS 61
Query: 65 XXHFXXXXXXXXXXXXQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP 124
F Q+ I N GEYL+ ISIGTPPV ILA+ADTGSDLIWTQC PC
Sbjct: 62 TLQFSNDDASPNSP--QSFITSNRGEYLMNISIGTPPVPILAIADTGSDLIWTQCNPC-- 117
Query: 125 SQCYKQDNPLFDPQRXXXXXXXXXXXXQCAPPIKDSCSAEGN-CRYSVSYGDDSFSNGDL 183
CY+Q +PLFDP+ QC SCS + N C Y+++YGD+S++ GD+
Sbjct: 118 EDCYQQTSPLFDPKESSTYRKVSCSSSQCRALEDASCSTDENTCSYTITYGDNSYTKGDV 177
Query: 184 ATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGK 243
A +TVT+GS+ + V+L ++ GCG +N G F+ GI+GLGGG SL+SQ++ +I GK
Sbjct: 178 AVDTVTMGSSGRRPVSLRNMIIGCGHENTGTFDPAGSGIIGLGGGSTSLVSQLRKSINGK 237
Query: 244 FSYCLVQQSS-----TKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRL- 297
FSYCLV +S +KINFGTNGIVSG GVVST ++ K+P T+Y L L+AISVG +++
Sbjct: 238 FSYCLVPFTSETGLTSKINFGTNGIVSGDGVVSTSMVKKDPATYYFLNLEAISVGSKKIQ 297
Query: 298 --GVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSIS 352
I G+ G +IVIDSGTTLT LP + +L SV++S I A+ V+ P LCY S
Sbjct: 298 FTSTIFGTGEG-NIVIDSGTTLTLLPSNFYYELESVVASTIKAERVQDPDGILSLCYRDS 356
Query: 353 SRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDI 412
S + P++T+HF+ DVKL N F+ +SED+ C F A + + ++GN+ Q NFL+GYD
Sbjct: 357 SSFKVPDITVHFKGGDVKLGNLNTFVAVSEDVSCFAFAANEQLTIFGNLAQMNFLVGYDT 416
Query: 413 EGRTVSFKPTDCSK 426
TVSFK TDCS+
Sbjct: 417 VSGTVSFKKTDCSQ 430
|
|
| TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 132/315 (41%), Positives = 178/315 (56%)
Query: 2 ETFLSCAF--ILFFLCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQXXXXXXX 59
+TFL C+ I FF S + A +VELIHRDSP SP YNP+ T
Sbjct: 4 KTFLYCSLLAISFFFA----SNSSANRENLTVELIHRDSPHSPLYNPHHTVSDRLNAAFL 59
Query: 60 XXXXXXXHFXXXXXXXXXXXXQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQC 119
F Q+ +I N GEY + ISIGTPP ++ A+ADTGSDL W QC
Sbjct: 60 RSISRSRRFTTKTDL------QSGLISNGGEYFMSISIGTPPSKVFAIADTGSDLTWVQC 113
Query: 120 QPCPPSQCYKQDNPLFDPQRXXXXXXXXXXXXQCAP--PIKDSCSAEGN-CRYSVSYGDD 176
+PC QCYKQ++PLFD ++ C ++ C + C+Y SYGD+
Sbjct: 114 KPC--QQCYKQNSPLFDKKKSSTYKTESCDSKTCQALSEHEEGCDESKDICKYRYSYGDN 171
Query: 177 SFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQM 236
SF+ GD+ATET+++ S+SG +V+ P VFGCG NGG F GI+GLGGG SL+SQ+
Sbjct: 172 SFTKGDVATETISIDSSSGSSVSFPGTVFGCGYNNGGTFEETGSGIIGLGGGPLSLVSQL 231
Query: 237 KTTIAGKFSYCLVQQSSTK-----INFGTNGIVSG----SGVVSTPLLAKNPKTFYSLTL 287
++I KFSYCL ++T IN GTN I S S ++TPL+ K+P+T+Y LTL
Sbjct: 232 GSSIGKKFSYCLSHTAATTNGTSVINLGTNSIPSNPSKDSATLTTPLIQKDPETYYFLTL 291
Query: 288 DAISVGDQRLGVISG 302
+A++VG +L G
Sbjct: 292 EAVTVGKTKLPYTGG 306
|
|
| TAIR|locus:2046228 AT2G28040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 144/351 (41%), Positives = 198/351 (56%)
Query: 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXX 141
AD + + EYL+++ IGTPP EI AV DTGS+ IWTQC PC CY Q P+FDP +
Sbjct: 56 ADTVFDTYEYLMKLQIGTPPFEIEAVLDTGSEHIWTQCLPCV--HCYNQTAPIFDPSKSS 113
Query: 142 XXXXXXXXXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALP 201
+C D+ + +C Y + YG S++ G L TETVT+ STSGQ +P
Sbjct: 114 TFKEI-----RC-----DT--HDHSCPYELVYGGKSYTKGTLVTETVTIHSTSGQPFVMP 161
Query: 202 EIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN 261
E + GCG N G F G+VGL G SLI+QM G SYC + ++KINFG N
Sbjct: 162 ETIIGCGRNNSG-FKPGFAGVVGLDRGPKSLITQMGGEYPGLMSYCFAGKGTSKINFGAN 220
Query: 262 GIVSGSGVVSTPLLAKNPKT-FYSLTLDAISVGDQRLGVISGSNPG--GDIVIDSGTTLT 318
IV+G GVVST + K K FY L LDA+SVG+ R+ + G+IVIDSG+TLT
Sbjct: 221 AIVAGDGVVSTTVFVKTAKPGFYYLNLDAVSVGNTRIETVGTPFHALKGNIVIDSGSTLT 280
Query: 319 YLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRD-ADVKLSTSNVF 377
Y P +Y + + + ++ A LCY + FP +T+HF AD+ L N++
Sbjct: 281 YFPESYCNLVRKAVEQVVTAVRFPRSDILCYYSKTIDIFPVITMHFSGGADLVLDKYNMY 340
Query: 378 M-NISEDLVCS--VFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425
+ + + + C + N+ + ++GN Q NFL+GYD VSFKPT+CS
Sbjct: 341 VASNTGGVFCLAIICNSPIEEAIFGNRAQNNFLVGYDSSSLLVSFKPTNCS 391
|
|
| TAIR|locus:2062809 AT2G28220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 142/357 (39%), Positives = 193/357 (54%)
Query: 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXX 141
AD + + YL+++ +GTPP EI+A DTGSD+IWTQC PCP CY Q P+FDP +
Sbjct: 412 ADTLYDYSIYLMKLQVGTPPFEIVAEIDTGSDIIWTQCMPCP--NCYSQFAPIFDPSKSS 469
Query: 142 XXXXXXXXXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALP 201
+ C+ +C Y + Y D ++S G LATETVT+ STSG+ +
Sbjct: 470 TFR-------------EQRCNGN-SCHYEIIYADKTYSKGILATETVTIPSTSGEPFVMA 515
Query: 202 EIVFGCGTKNGGK----FNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKIN 257
E GCG N F S + GIVGL G SLISQM G SYC Q ++KIN
Sbjct: 516 ETKIGCGLDNTNLQYSGFASSSSGIVGLNMGPLSLISQMDLPYPGLISYCFSGQGTSKIN 575
Query: 258 FGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS--NPGGDIVIDSGT 315
FGTN IV+G G V+ + K FY L LDA+SV D + + G+I IDSGT
Sbjct: 576 FGTNAIVAGDGTVAADMFIKKDNPFYYLNLDAVSVEDNLIATLGTPFHAEDGNIFIDSGT 635
Query: 316 TLTYLPPAYASKLLSVMSSMIAAQPVE--GPYDL-CYSISSRPRFPEVTIHFRD-ADVKL 371
TLTY P +Y + + + ++ A V G +L CY + FP +T+HF AD+ L
Sbjct: 636 TLTYFPMSYCNLVREAVEQVVTAVKVPDMGSDNLLCYYSDTIDIFPVITMHFSGGADLVL 695
Query: 372 STSNVFMN-ISEDLVCSVFNARD-DIP-LYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425
N+++ I+ + C D +P ++GN Q NFL+GYD +SF PT+CS
Sbjct: 696 DKYNMYLETITGGIFCLAIGCNDPSMPAVFGNRAQNNFLVGYDPSSNVISFSPTNCS 752
|
|
| TAIR|locus:2046158 AT2G28030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 142/354 (40%), Positives = 190/354 (53%)
Query: 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXX 141
AD + + YL+++ +GTPP EI A DTGSDLIWTQC PC + CY Q P+FDP
Sbjct: 52 ADTLFDYNIYLMKLQVGTPPFEIEAEIDTGSDLIWTQCMPC--TNCYSQYAPIFDPSNSS 109
Query: 142 XXXXXXXXXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALP 201
+ C+ +C Y + Y D ++S G LATETVT+ STSG+ +P
Sbjct: 110 TFK-------------EKRCNGN-SCHYKIIYADTTYSKGTLATETVTIHSTSGEPFVMP 155
Query: 202 EIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN 261
E GCG N F G+VGL G +SLI+QM G SYC Q ++KINFGTN
Sbjct: 156 ETTIGCG-HNSSWFKPTFSGMVGLSWGPSSLITQMGGEYPGLMSYCFASQGTSKINFGTN 214
Query: 262 GIVSGSGVVSTPLLAKNPKT-FYSLTLDAISVGDQRLGVISGSNPG--GDIVIDSGTTLT 318
IV+G GVVST + K Y L LDA+SVGD + + + G+I+IDSGTTLT
Sbjct: 215 AIVAGDGVVSTTMFLTTAKPGLYYLNLDAVSVGDTHVETMGTTFHALEGNIIIDSGTTLT 274
Query: 319 YLPPAYASKLLSVMSSMIAAQPVEGPYD---LCYSISSRPRFPEVTIHFRD-ADVKLSTS 374
Y P +Y + + + + A P LCY + FP +T+HF AD+ L
Sbjct: 275 YFPVSYCNLVREAVDHYVTAVRTADPTGNDMLCYYTDTIDIFPVITMHFSGGADLVLDKY 334
Query: 375 NVFMN-ISEDLVCS--VFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425
N+++ I+ C + N ++GN Q NFL+GYD VSF PT+CS
Sbjct: 335 NMYIETITRGTFCLAIICNNPPQDAIFGNRAQNNFLVGYDSSSLLVSFSPTNCS 388
|
|
| TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 138/315 (43%), Positives = 177/315 (56%)
Query: 10 ILFFLCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQXXXXXXXXXXXXXXHFX 69
+ FFL SV + FSVELIHRDSP SP YNP T F
Sbjct: 7 LCFFLFFSVTLSSSGHPKNFSVELIHRDSPLSPIYNPQITVTDRLNAAFLRSVSRSRRFN 66
Query: 70 XXXXXXXXXXXQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYK 129
Q+ +I GE+ + I+IGTPP+++ A+ADTGSDL W QC+PC QCYK
Sbjct: 67 HQLSQTDL---QSGLIGADGEFFMSITIGTPPIKVFAIADTGSDLTWVQCKPC--QQCYK 121
Query: 130 QDNPLFDPQRXXXXXXXXXXXXQCAP--PIKDSCSAEGN-CRYSVSYGDDSFSNGDLATE 186
++ P+FD ++ C + C N C+Y SYGD SFS GD+ATE
Sbjct: 122 ENGPIFDKKKSSTYKSEPCDSRNCQALSSTERGCDESNNICKYRYSYGDQSFSKGDVATE 181
Query: 187 TVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSY 246
TV++ S SG V+ P VFGCG NGG F+ GI+GLGGG SLISQ+ ++I+ KFSY
Sbjct: 182 TVSIDSASGSPVSFPGTVFGCGYNNGGTFDETGSGIIGLGGGHLSLISQLGSSISKKFSY 241
Query: 247 CLVQQSSTK-----INFGTNGIVSG----SGVVSTPLLAKNPKTFYSLTLDAISVGDQRL 297
CL +S+T IN GTN I S SGVVSTPL+ K P T+Y LTL+AISVG +++
Sbjct: 242 CLSHKSATTNGTSVINLGTNSIPSSLSKDSGVVSTPLVDKEPLTYYYLTLEAISVGKKKI 301
Query: 298 GVISGS-NPGGDIVI 311
S NP D ++
Sbjct: 302 PYTGSSYNPNDDGIL 316
|
|
| TAIR|locus:2057831 AT2G28010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 124/320 (38%), Positives = 172/320 (53%)
Query: 117 TQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXXXXQCAPPIKDSCSAEGNCRYSVSYGDD 176
T Q P CY+Q+ P+FDP + + C +C Y V Y D
Sbjct: 89 TWTQCLPCVHCYEQNAPIFDPSKSSTFK-------------EKRCDGH-SCPYEVDYFDH 134
Query: 177 SFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQM 236
+++ G LATET+T+ STSG+ +PE + GCG N F G+VGL G +SLI+QM
Sbjct: 135 TYTMGTLATETITLHSTSGEPFVMPETIIGCGHNNSW-FKPSFSGMVGLNWGPSSLITQM 193
Query: 237 KTTIAGKFSYCLVQQSSTKINFGTNGIVSGSGVVSTPLLAKNPKT-FYSLTLDAISVGDQ 295
G SYC Q ++KINFG N IV+G GVVST + K FY L LDA+SVG+
Sbjct: 194 GGEYPGLMSYCFSGQGTSKINFGANAIVAGDGVVSTTMFMTTAKPGFYYLNLDAVSVGNT 253
Query: 296 RLGVISGSNPG--GDIVIDSGTTLTYLPPAYASKLLS----VMSSMIAAQPVEGPYDLCY 349
R+ + + G+IVIDSGTTLTY P +Y + + V++++ AA P G LCY
Sbjct: 254 RIETMGTTFHALEGNIVIDSGTTLTYFPVSYCNLVRQAVEHVVTAVRAADPT-GNDMLCY 312
Query: 350 SISSRPRFPEVTIHFRDA-DVKLSTSNVFMNISEDLV-CS--VFNARDDIPLYGNIMQTN 405
+ + FP +T+HF D+ L N++M + V C + N+ ++GN Q N
Sbjct: 313 NSDTIDIFPVITMHFSGGVDLVLDKYNMYMESNNGGVFCLAIICNSPTQEAIFGNRAQNN 372
Query: 406 FLIGYDIEGRTVSFKPTDCS 425
FL+GYD VSF PT+CS
Sbjct: 373 FLVGYDSSSLLVSFSPTNCS 392
|
|
| TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 125/347 (36%), Positives = 172/347 (49%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXX 148
G Y++ I IGTP ++ V DTGSDL WTQC+PC S CY Q P F+P
Sbjct: 130 GNYIVTIGIGTPKHDLSLVFDTGSDLTWTQCEPCLGS-CYSQKEPKFNPSSSSTYQNVSC 188
Query: 149 XXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
C +SCSA NC YS+ YGD SF+ G LA E T+ ++ L ++ FGCG
Sbjct: 189 SSPMCEDA--ESCSAS-NCVYSIVYGDKSFTQGFLAKEKFTLTNSD----VLEDVYFGCG 241
Query: 209 TKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCL---VQQSSTKINFGTNGIVS 265
N G F+ G++GLG G SL +Q TT FSYCL S+ + FG+ GI
Sbjct: 242 ENNQGLFDGVA-GLLGLGPGKLSLPAQTTTTYNNIFSYCLPSFTSNSTGHLTFGSAGI-- 298
Query: 266 GSGVVSTPLLAKNPKTF-YSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAY 324
V TP+ + P F Y + + ISVGD+ L + S +IDSGT T LP
Sbjct: 299 SESVKFTPI-SSFPSAFNYGIDIIGISVGDKELAITPNSFSTEGAIIDSGTVFTRLPTKV 357
Query: 325 ASKLLSVMSSMIAAQPVE---GPYDLCYSISSRPR--FPEVTIHFRDADV-KLSTSNVFM 378
++L SV +++ G +D CY + +P + F + V +L S + +
Sbjct: 358 YAELRSVFKEKMSSYKSTSGYGLFDTCYDFTGLDTVTYPTIAFSFAGSTVVELDGSGISL 417
Query: 379 NISEDLVCSVFNARDDIP-LYGNIMQTNFLIGYDIEGRTVSFKPTDC 424
I VC F DD+P ++GN+ QT + YD+ G V F P C
Sbjct: 418 PIKISQVCLAFAGNDDLPAIFGNVQQTTLDVVYDVAGGRVGFAPNGC 464
|
|
| TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 127/358 (35%), Positives = 177/358 (49%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXX 148
GEY R+ +GTP + V DTGSD++W QC PC +CY Q +P+FDP++
Sbjct: 140 GEYFTRLGVGTPARYVYMVLDTGSDIVWLQCAPC--RRCYSQSDPIFDPRKSKTYATIPC 197
Query: 149 XXXQCAPPIKDSCSAEGN-CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGC 207
C C+ C Y VSYGD SF+ GD +TET+T + VAL GC
Sbjct: 198 SSPHCRRLDSAGCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRNRVKGVAL-----GC 252
Query: 208 GTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTNGIVSGS 267
G N G F G++GLG G S Q KFSYCLV +S++ + +V G+
Sbjct: 253 GHDNEGLFVGAA-GLLGLGKGKLSFPGQTGHRFNQKFSYCLVDRSASS---KPSSVVFGN 308
Query: 268 GVVS-----TPLLAKNPK--TFYSLTLDAISVGDQRLGVISGS-----NPG-GDIVIDSG 314
VS TPLL+ NPK TFY + L ISVG R+ ++ S G G ++IDSG
Sbjct: 309 AAVSRIARFTPLLS-NPKLDTFYYVGLLGISVGGTRVPGVTASLFKLDQIGNGGVIIDSG 367
Query: 315 TTLTYL-PPAYASK--LLSVMSSMIAAQPVEGPYDLCYSISS--RPRFPEVTIHFRDADV 369
T++T L PAY + V + + P +D C+ +S+ + P V +HFR ADV
Sbjct: 368 TSVTRLIRPAYIAMRDAFRVGAKTLKRAPDFSLFDTCFDLSNMNEVKVPTVVLHFRGADV 427
Query: 370 KLSTSNVFMNISED-LVCSVF-NARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425
L +N + + + C F + + GNI Q F + YD+ V F P C+
Sbjct: 428 SLPATNYLIPVDTNGKFCFAFAGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGCA 485
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6XBF8 | CDR1_ARATH | 3, ., 4, ., 2, 3, ., - | 0.5302 | 0.9250 | 0.9038 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.23 | 0.766 |
| 3rd Layer | 3.4.23.12 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 427 | |||
| PLN03146 | 431 | PLN03146, PLN03146, aspartyl protease family prote | 0.0 | |
| cd05476 | 265 | cd05476, pepsin_A_like_plant, Chroloplast Nucleoid | 4e-81 | |
| cd05472 | 299 | cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin | 5e-65 | |
| cd05471 | 283 | cd05471, pepsin_like, Pepsin-like aspartic proteas | 3e-49 | |
| cd05475 | 273 | cd05475, nucellin_like, Nucellins, plant aspartic | 3e-25 | |
| pfam00026 | 316 | pfam00026, Asp, Eukaryotic aspartyl protease | 4e-25 | |
| cd06096 | 326 | cd06096, Plasmepsin_5, Plasmepsins are a class of | 8e-17 | |
| cd05470 | 109 | cd05470, pepsin_retropepsin_like, Cellular and ret | 1e-16 | |
| cd06097 | 278 | cd06097, Aspergillopepsin_like, Aspergillopepsin_l | 3e-14 | |
| cd05478 | 317 | cd05478, pepsin_A, Pepsin A, aspartic protease pro | 2e-12 | |
| cd05489 | 362 | cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit | 9e-12 | |
| cd05477 | 318 | cd05477, gastricsin, Gastricsins, asparate proteas | 1e-10 | |
| cd05488 | 320 | cd05488, Proteinase_A_fungi, Fungal Proteinase A , | 1e-09 | |
| cd05474 | 295 | cd05474, SAP_like, SAPs, pepsin-like proteinases s | 3e-09 | |
| cd05485 | 329 | cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi | 6e-09 | |
| cd05487 | 326 | cd05487, renin_like, Renin stimulates production o | 4e-08 | |
| cd05486 | 316 | cd05486, Cathespin_E, Cathepsin E, non-lysosomal a | 6e-07 | |
| cd05490 | 325 | cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family | 1e-06 | |
| PTZ00165 | 482 | PTZ00165, PTZ00165, aspartyl protease; Provisional | 2e-05 | |
| cd06098 | 317 | cd06098, phytepsin, Phytepsin, a plant homolog of | 3e-05 |
| >gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional | Back alignment and domain information |
|---|
Score = 568 bits (1466), Expect = 0.0
Identities = 251/434 (57%), Positives = 301/434 (69%), Gaps = 16/434 (3%)
Query: 6 SCAFILFFLCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRL 65
S L S LS AEA GF+V+LIHRDSPKSPFYNP+ETP QRLRNA RS +R+
Sbjct: 2 SVLLALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRV 61
Query: 66 RHFNKNSSVSSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPS 125
HF + S Q+D+I N GEYL+ ISIGTPPV ILA+ADTGSDLIWTQC+PC
Sbjct: 62 NHFRPTDA--SPNDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD-- 117
Query: 126 QCYKQDNPLFDPQRSSTYKYLSCSSSQC-APPIKDSCSAEGNCRYSVSYGDDSFSNGDLA 184
CYKQ +PLFDP++SSTYK +SC SSQC A + SCS E C YS SYGD SF+ G+LA
Sbjct: 118 DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTKGNLA 177
Query: 185 TETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKF 244
ET+T+GSTSG+ V+ P IVFGCG NGG F+ K GIVGLGGG SLISQ+ ++I GKF
Sbjct: 178 VETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKF 237
Query: 245 SYCLVQQSST-----KINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGV 299
SYCLV SS KINFGTN IVSGSGVVSTPL++K+P TFY LTL+AISVG ++L
Sbjct: 238 SYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPY 297
Query: 300 ISGSNPG---GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP---YDLCYSISS 353
S G G+I+IDSGTTLT LP + S+L S + I + V P LCYS +S
Sbjct: 298 TGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS 357
Query: 354 RPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIE 413
+ P +T HF ADVKL N F+ +SEDLVC I ++GN+ Q NFL+GYD+E
Sbjct: 358 DIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPTSSIAIFGNLAQMNFLVGYDLE 417
Query: 414 GRTVSFKPTDCSKQ 427
+TVSFKPTDC+K
Sbjct: 418 SKTVSFKPTDCTKM 431
|
Length = 431 |
| >gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 4e-81
Identities = 124/349 (35%), Positives = 164/349 (46%), Gaps = 98/349 (28%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
EYL+ +SIGTPP + DTGSDL WTQC
Sbjct: 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------ 30
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
C Y SYGD S ++G LATET T G +S V++P + FGCGT
Sbjct: 31 -----------------CSYEYSYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGT 70
Query: 210 KNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLV----QQSSTKINFGTNGIVS 265
N G DGI+GLG G SL+SQ+ +T KFSYCLV S+ + G +
Sbjct: 71 DNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVPHDDTGGSSPLILGDAADLG 129
Query: 266 GSGVVSTPLLAKNPK--TFYSLTLDAISVGDQRL-----GVISGSNPGGDIVIDSGTTLT 318
GSGVV TPL+ KNP T+Y + L+ ISVG +RL S+ G +IDSGTTLT
Sbjct: 130 GSGVVYTPLV-KNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLT 188
Query: 319 YLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRD-ADVKLSTSNVF 377
YLP +P++T+HF AD++L N F
Sbjct: 189 YLPDPA--------------------------------YPDLTLHFDGGADLELPPENYF 216
Query: 378 MNISEDLVCSVF--NARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424
+++ E +VC ++ + + GNI Q NFL+ YD+E + F P DC
Sbjct: 217 VDVGEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265
|
This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265 |
| >gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 5e-65
Identities = 121/351 (34%), Positives = 166/351 (47%), Gaps = 68/351 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
EY++ + +GTP + + DTGSDL W QCQPC
Sbjct: 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
C Y VSYGD S++ GDLAT+T+T+GS+ +P FGCG
Sbjct: 34 -----------------CLYQVSYGDGSYTTGDLATDTLTLGSSD----VVPGFAFGCGH 72
Query: 210 KNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTK---INFGTNGIVSG 266
N G F G++GLG G SL SQ ++ G FSYCL +SS+ ++FG
Sbjct: 73 DNEGLF-GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFG-AAASVP 130
Query: 267 SGVVSTPLLAKNPK--TFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPP-A 323
+G TP+L NP+ TFY + L ISVG +RL + S G ++IDSGT +T LPP A
Sbjct: 131 AGASFTPML-SNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSA 189
Query: 324 YA---SKLLSVMSSMIAAQPVEGPYDLCYSISSRP--RFPEVTIHFRD-ADVKLSTSNVF 377
YA + M++ A D CY +S P V++HF+ ADV+L S V
Sbjct: 190 YAALRDAFRAAMAAYPRAPGF-SILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVL 248
Query: 378 MNIS-EDLVCSVFNARDD---IPLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424
+ VC F D + + GN+ Q F + YD+ G + F P C
Sbjct: 249 YPVDDSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299
|
Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299 |
| >gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-49
Identities = 89/346 (25%), Positives = 137/346 (39%), Gaps = 78/346 (22%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSS 150
Y I+IGTPP + + DTGS L+W C C K +D +SSTYK C+
Sbjct: 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTGCT- 59
Query: 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK 210
+S++YGD S + G L T+TVT+G + +P FGC T
Sbjct: 60 ------------------FSITYGDGSVT-GGLGTDTVTIGGLT-----IPNQTFGCATS 95
Query: 211 NGGKF-NSKTDGIVGLGGGDA------SLISQMKTT---IAGKFSYCLVQQSSTK----I 256
G F +S DGI+GLG S Q+K+ + FS+ L + +
Sbjct: 96 ESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGEL 155
Query: 257 NFG-TNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGT 315
FG + + TP++ N ++ + LD ISVG + + SG GG ++DSGT
Sbjct: 156 TFGGIDPSKYTGDLTYTPVV-SNGPGYWQVPLDGISVGGKSVISSSG---GGGAIVDSGT 211
Query: 316 TLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSN 375
+L YLP + +L + A S P++T F
Sbjct: 212 SLIYLPSSVYDAILK----ALGAAVSSSDGGYGVDCSPCDTLPDITFTF----------- 256
Query: 376 VFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ G++ N+ +D++ + F P
Sbjct: 257 ----------LWIL---------GDVFLRNYYTVFDLDNNRIGFAP 283
|
Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283 |
| >gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 75/242 (30%), Positives = 100/242 (41%), Gaps = 52/242 (21%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
G Y + I+IG PP DTGSDL W QC D P C
Sbjct: 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQC-----------DAP--------------C 35
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
+ QC Y + Y D S G L T+ ++ T+G + A P I FGCG
Sbjct: 36 TGCQC--------------DYEIEYADGGSSMGVLVTDIFSLKLTNG-SRAKPRIAFGCG 80
Query: 209 TKNGG---KFNSKTDGIVGLGGGDASLISQMKT--TIAGKFSYCLVQQSSTKINFGTNGI 263
G TDGI+GLG G SL SQ+ + I +CL + FG + +
Sbjct: 81 YDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFG-DDL 139
Query: 264 VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPP- 322
V SGV TP+ ++ K YS ++ Q G G ++V DSG++ TY
Sbjct: 140 VPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG-----GKGLEVVFDSGSSYTYFNAQ 194
Query: 323 AY 324
AY
Sbjct: 195 AY 196
|
Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. Length = 273 |
| >gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-25
Identities = 101/363 (27%), Positives = 152/363 (41%), Gaps = 79/363 (21%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIW---TQCQPCPPSQCYKQDNPLFDPQRSSTYKYL 146
EY ISIGTPP + V DTGS +W C C FDP +SSTYK L
Sbjct: 1 EYYGTISIGTPPQKFTVVFDTGSSDLWVPSVYCTSS--YACKSHG--TFDPSKSSTYKSL 56
Query: 147 SCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFG 206
+ +S+SYGD S ++G L +TVTVG + + FG
Sbjct: 57 GTT-------------------FSISYGDGSSASGFLGQDTVTVGGIT-----VTNQQFG 92
Query: 207 CGTKNGGKFN--SKTDGIVGLG------GGDAS-----LISQ--MKTTIAGKFSYCLVQQ 251
TK G F + DGI+GLG G + L SQ + + FS L
Sbjct: 93 LATKEPGSFFATAVFDGILGLGFPSIEAVGTYTPVFDNLKSQGLIDSPA---FSVYLNSD 149
Query: 252 SST--KINFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305
+ +I FG G+ +GS + P+ + + ++ +TLD+I+VG + +
Sbjct: 150 DAGGGEIIFG--GVDPSKYTGS-LTWVPVTS---QGYWQITLDSITVGGS----ATFCSS 199
Query: 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFR 365
G ++D+GT+L Y P + SK+ + A+ G Y + S P+VT
Sbjct: 200 GCQAILDTGTSLLYGPTSIVSKIAKAVG---ASLSEYGGYVV--DCDSISSLPDVTFFIG 254
Query: 366 DADVKLSTSN-VFMNISEDL-VCSV-FNARDDIPLYGNIMQTNFL----IGYDIEGRTVS 418
A + + S+ V S C F + PL+ I+ FL + +D + +
Sbjct: 255 GAKITVPPSDYVLQPSSGGSSTCLSGFQSSPGGPLW--ILGDVFLRSAYVVFDRDNNRIG 312
Query: 419 FKP 421
F P
Sbjct: 313 FAP 315
|
Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases. Length = 316 |
| >gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 8e-17
Identities = 63/264 (23%), Positives = 106/264 (40%), Gaps = 34/264 (12%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
Y I I IG PP + + DTGS + C C C P ++ S T L C
Sbjct: 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK--NCGIHMEPPYNLNNSITSSILYC 59
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGS---TSGQAVALPEIVF 205
++C C YS+SY + S +G ++ V+ S ++ + + + +F
Sbjct: 60 DCNKC---CYCLSCLNNKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESF-KKIF 115
Query: 206 GCGTKNGGKFNS-KTDGIVGLGGGDAS--------LISQMKTTIAGK-FSYCLV------ 249
GC T F + + GI+GL + L ++ K FS CL
Sbjct: 116 GCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSEDGGEL 175
Query: 250 ---QQSSTKINFGTNGIVSG-SGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305
++ + S +V TP+ K +Y + L+ +SV SG+
Sbjct: 176 TIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKY---YYYVKLEGLSVYGTTSN--SGNTK 230
Query: 306 GGDIVIDSGTTLTYLPPAYASKLL 329
G +++DSG+TL++ P +K+
Sbjct: 231 GLGMLVDSGSTLSHFPEDLYNKIN 254
|
The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. There are four types of plasmepsins, closely related but varying in the specificity of cleavage site. The name plasmepsin may come from plasmodium (the organism) and pepsin (a common aspartic acid protease with similar molecular structure). This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326 |
| >gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-16
Identities = 42/135 (31%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 93 IRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQ 152
I I IGTPP + DTGS +W C Y + DP SSTY
Sbjct: 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYD-DPSASSTYS-------- 51
Query: 153 CAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNG 212
+ C +S++YG S S G L+T+TV++G + FGC T
Sbjct: 52 -----------DNGCTFSITYGTGSLS-GGLSTDTVSIGDIE-----VVGQAFGCATDEP 94
Query: 213 GKF--NSKTDGIVGL 225
G + DGI+GL
Sbjct: 95 GATFLPALFDGILGL 109
|
This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site ASP residues with each N- and C-terminal lobe contributing one residue. While the fungal and mammalian pepsins are bilobal proteins, retropepsins function as dimers and the monomer resembles structure of the N- or C-terminal domains of eukaryotic enzyme. The active site motif (Asp-Thr/Ser-Gly-Ser) is conserved between the retroviral and eukaryotic proteases and between the N-and C-terminal of eukaryotic pepsin-like proteases. The retropepsin-like family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements; as well as eukaryotic DNA-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. Retropepsin is synthesized as part of the POL polyprotein that contains an aspartyl-protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A) and A2 (retropepsin family). Length = 109 |
| >gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 63/247 (25%), Positives = 97/247 (39%), Gaps = 46/247 (18%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSS 150
YL + IGTPP + DTGS +W P + + L+DP +SST K L
Sbjct: 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--AAQQGGHKLYDPSKSSTAKLLP--- 55
Query: 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS--GQAVALPEIVFGCG 208
+S+SYGD S ++G + T+TV++G QA+ L V
Sbjct: 56 ---------------GATWSISYGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASF 100
Query: 209 TKNGGKFNSKTDGIVGLGGGDASLISQ----------MKTTIAGKFSYCLVQQSSTKINF 258
+ +DG++GL + + + + A F+ L + + F
Sbjct: 101 FSDTA-----SDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFTADLRKAAPGFYTF 155
Query: 259 G--TNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
G G + TP+ N F+ T + +VG S G + D+GTT
Sbjct: 156 GYIDESKYKGE-ISWTPV--DNSSGFWQFTSTSYTVGGDA----PWSRSGFSAIADTGTT 208
Query: 317 LTYLPPA 323
L LP A
Sbjct: 209 LILLPDA 215
|
The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-site cleft capable of interacting with multiple residues of a substrate. Although members of the aspartic protease family of enzymes have very similar three-dimensional structures and catalytic mechanisms, each has unique substrate specificity. The members of this family has an optimal acidic pH (5.5) and cleaves protein substrates with similar specificity to that of porcine pepsin A, preferring hydrophobic residues at P1 and P1' in the cleave site. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 278 |
| >gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 75/295 (25%), Positives = 120/295 (40%), Gaps = 67/295 (22%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
EY ISIGTPP + + DTGS +W C C ++ F+P++SSTY+
Sbjct: 10 EYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC--SNHNRFNPRQSSTYQ----- 62
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
S+ YG S + G L +TV VG ++ +FG
Sbjct: 63 --------------STGQPLSIQYGTGSMT-GILGYDTVQVGG-----ISDTNQIFGLSE 102
Query: 210 KNGGKFN--SKTDGIVGLG---------------GGDASLISQMKTTIAGKFSYCLVQ-- 250
G F + DGI+GL L+SQ FS L
Sbjct: 103 TEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQ------DLFSVYLSSNG 156
Query: 251 QSSTKINFGTNGIVSGSGVVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309
Q + + FG +G ++ P+ A +T++ +T+D++++ Q + G
Sbjct: 157 QQGSVVTFGGIDPSYYTGSLNWVPVTA---ETYWQITVDSVTINGQVVACSGGCQA---- 209
Query: 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRPRFPEVTIH 363
++D+GT+L P S + ++ S + A+Q G + C SISS P+V
Sbjct: 210 IVDTGTSLLVGPS---SDIANIQSDIGASQNQNGEMVVNCSSISS---MPDVVFT 258
|
Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317 |
| >gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 74/379 (19%), Positives = 127/379 (33%), Gaps = 71/379 (18%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSS 150
Y I G P+ V D L+W+ C D SSTY+ + CSS
Sbjct: 1 YTITPLKGAVPL----VLDLAGPLLWSTC----------------DAGHSSTYQTVPCSS 40
Query: 151 SQCA------PPIKDSCSAEGNCRYSV--SYGDDSFSN----GDLATETVTVGSTSGQAV 198
S C+ P + C + ++ + + GDL + ++ +T G
Sbjct: 41 SVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNP 100
Query: 199 ALPEI---VFGCGTKNGGK-FNSKTDGIVGLGGGDASLISQM--KTTIAGKFSYCLVQQS 252
L I VF C K G+ GLG SL +Q+ +A KF+ CL
Sbjct: 101 LLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPSSP 160
Query: 253 STK---------INFGTNGIVSGSGVVSTPLLAKNPK-TFYSLTLDAISVGDQRLGV--- 299
I + TPLL K Y + + +I+V + +
Sbjct: 161 GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPT 220
Query: 300 --ISGSNPGGDIVIDSGTTLTYLPP----AYASKLLSVMSSMIAAQPVEGPYDLCYSIS- 352
+ G + + + T L A+ + + +LCY S
Sbjct: 221 LSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASA 280
Query: 353 ---SR--PRFPEVTIHFRDADV--KLSTSNVFMNISEDLVCSVF-----NARDDIPLYGN 400
+R P + + V + +N + + + C F R + + G+
Sbjct: 281 LGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGH 340
Query: 401 IMQTNFLIGYDIEGRTVSF 419
M+ + L+ +D+E + F
Sbjct: 341 QME-DNLLVFDLEKSRLGF 358
|
Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability of tight binding and inhibition with subnanomolar affinity and indicates the importance of the C-terminal end for the differences in xylanase specificity among different TAXI-type inhibitors. This family also contains pepsin-like aspartic proteinases homologous to TAXI-I. Unlike TAXI-I, they have active site aspartates and are functionally active. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 362 |
| >gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-10
Identities = 77/282 (27%), Positives = 117/282 (41%), Gaps = 54/282 (19%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSS 150
Y ISIGTPP L + DTGS +W C C ++ F+P +SSTY
Sbjct: 4 YYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQAC--TNHTKFNPSQSSTY------- 54
Query: 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK 210
S G +S+ YG S + G +TVTV Q + + FG
Sbjct: 55 -----------STNGE-TFSLQYGSGSLT-GIFGYDTVTV-----QGIIITNQEFGLSET 96
Query: 211 NGGK--FNSKTDGIVGLG------GGDASLISQMKTT---IAGKFSYCLVQQSSTK---I 256
G ++ DGI+GL GG +++ M A FS+ L Q + +
Sbjct: 97 EPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGEL 156
Query: 257 NFG--TNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSG 314
FG N + +G + TP+ + +T++ + + + Q G S G ++D+G
Sbjct: 157 VFGGVDNNLYTGQ-IYWTPVTS---ETYWQIGIQGFQINGQATGWCS---QGCQAIVDTG 209
Query: 315 TTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRP 355
T+L P S L M S+ A Q G Y + C +I + P
Sbjct: 210 TSLLTAPQQVMSTL---MQSIGAQQDQYGQYVVNCNNIQNLP 248
|
Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 318 |
| >gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 76/354 (21%), Positives = 129/354 (36%), Gaps = 65/354 (18%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
+Y I++GTPP + + DTGS +W C C+ +D SSTYK
Sbjct: 10 QYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSK--YDSSASSTYK----- 62
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPEI 203
A G + + YG S G ++ +T+++G + +A + P +
Sbjct: 63 -------------ANGT-EFKIQYGSGSLE-GFVSQDTLSIGDLTIKKQDFAEATSEPGL 107
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDASL---------ISQMKTTIAGKFSYCLVQQSST 254
F G K DGI+GL S+ + FS+ L
Sbjct: 108 AFAFG---------KFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEED 158
Query: 255 KINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSG 314
GI L K ++ + L+ I +GD+ L + + ID+G
Sbjct: 159 GGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTG-----AAIDTG 213
Query: 315 TTLTYLPPAYASKLLSVMSSMIAAQPV-EGPYDLCYSISSRPRFPEVTIHFRDADVKLST 373
T+L LP S L ++++ I A+ G Y + S P++T +F + L
Sbjct: 214 TSLIALP----SDLAEMLNAEIGAKKSWNGQYTV--DCSKVDSLPDLTFNFDGYNFTLGP 267
Query: 374 SNVFMNISEDLVCSVFNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ + +S + S F D + + G+ + YD+ V
Sbjct: 268 FDYTLEVSGSCI-SAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320
|
Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 320 |
| >gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 61/290 (21%), Positives = 111/290 (38%), Gaps = 68/290 (23%)
Query: 169 YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGG 228
+S+SYGD + ++G T+TV++G + + + F S G++G+G
Sbjct: 32 FSISYGDGTSASGTWGTDTVSIGGAT-----VKNLQFAVANST-----SSDVGVLGIG-- 79
Query: 229 DASLISQMKTTIAGKFSY-----CLVQQSSTKIN-----------------FGTNGI--- 263
+ + T ++Y L +Q K N FG G+
Sbjct: 80 ----LPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFG--GVDTA 133
Query: 264 -VSGSGVVSTPLLAKNPKTFY---SLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTY 319
SG +V+ P++ N + S+TL +ISV G + + ++DSGTTLTY
Sbjct: 134 KYSGD-LVTLPIVNDNGGSEPSELSVTLSSISVNGSS-GNTTLLSKNLPALLDSGTTLTY 191
Query: 320 LPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMN 379
LP + + + C + +T +F A + + S++ +
Sbjct: 192 LPSDIVDAIAKQLGATY-DSDEGLYVVDCDAKDDG----SLTFNFGGATISVPLSDLVLP 246
Query: 380 ISE----DLVC--SVFNARDDIPLYGNIMQTNFL----IGYDIEGRTVSF 419
S D C + + D + G+ FL + YD++ +S
Sbjct: 247 ASTDDGGDGACYLGIQPSTSDYNILGD----TFLRSAYVVYDLDNNEISL 292
|
SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). The overall structure of Sap protein conforms to the classical aspartic proteinase fold typified by pepsin. SAP is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 295 |
| >gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 6e-09
Identities = 79/290 (27%), Positives = 122/290 (42%), Gaps = 67/290 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQ--CYKQDNPLFDPQRSSTYKYLS 147
+Y I+IGTPP V DTGS +W + C + C + +D +SSTYK
Sbjct: 11 QYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNK--YDSTKSSTYK--- 65
Query: 148 CSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGS------TSGQAVALP 201
G +++ YG S S G L+T+TV+VG T +A+ P
Sbjct: 66 ---------------KNGT-EFAIQYGSGSLS-GFLSTDTVSVGGVSVKGQTFAEAINEP 108
Query: 202 EIVFGCGTKNGGKFNSKTDGIVGLGGGDAS----------LISQMKTTIAGKFSYCLVQQ 251
+ F +K DGI+G+G S +++Q K A FS+ L +
Sbjct: 109 GLTF---------VAAKFDGILGMGYSSISVDGVVPVFYNMVNQ-KLVDAPVFSFYLNRD 158
Query: 252 SSTKINFGTNGIVSGSG----VVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307
S K G I+ GS + L K ++ +D++SVG+ + G
Sbjct: 159 PSAKE--GGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF-----CSGGC 211
Query: 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPV-EGPYDL-CYSISSRP 355
+ D+GT+L P KL ++ I A+P+ G Y + C +I S P
Sbjct: 212 QAIADTGTSLIAGPVDEIEKL----NNAIGAKPIIGGEYMVNCSAIPSLP 257
|
Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 329 |
| >gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 80/352 (22%), Positives = 134/352 (38%), Gaps = 74/352 (21%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLS 147
+Y I IGTPP V DTGS +W C P + C + L+D SSTYK
Sbjct: 8 QYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHN--LYDASDSSTYK--- 62
Query: 148 CSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVG-----STSGQAVALPE 202
E +++ Y + G L+ + VTVG G+ ALP
Sbjct: 63 ----------------ENGTEFTIHYASGTVK-GFLSQDIVTVGGIPVTQMFGEVTALPA 105
Query: 203 IVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQS------STKI 256
I F +K DG++G+G Q + F + Q S
Sbjct: 106 IPFML---------AKFDGVLGMG-----YPKQAIGGVTPVFDNIMSQGVLKEDVFSVYY 151
Query: 257 NFGTNGIVSGSGVV--STP--------LLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306
+ ++ + G V+ S P + + F+ + + +SVG G
Sbjct: 152 SRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSS----TLLCEDG 207
Query: 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRD 366
V+D+G + P + +S + + A+ G Y + + P P+++ H
Sbjct: 208 CTAVVDTGASFISGP----TSSISKLMEALGAKERLGDYVV--KCNEVPTLPDISFHLGG 261
Query: 367 ADVKLSTSNVFMNISE--DLVCSV-FNARDDIPLYGN--IMQTNFLIGYDIE 413
+ LS+S+ + S+ D +C+V F+A D P G ++ F+ + E
Sbjct: 262 KEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTE 313
|
Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326 |
| >gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 6e-07
Identities = 68/279 (24%), Positives = 107/279 (38%), Gaps = 49/279 (17%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSS 150
Y +ISIGTPP + DTGS +W C C K + F P SSTY +
Sbjct: 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNR--FQPSESSTYVSNGEA- 57
Query: 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK 210
+S+ YG S + G + + VTV + Q E V ++
Sbjct: 58 ------------------FSIQYGTGSLT-GIIGIDQVTVEGITVQNQQFAESV----SE 94
Query: 211 NGGKF-NSKTDGIVGLG------GGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTNGI 263
G F +S+ DGI+GL G + M + V S N G
Sbjct: 95 PGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNP-NSADGGE 153
Query: 264 VSGSGVVSTPLLAK------NPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTL 317
+ G ++ + + ++ + LD I VG G + + G ++D+GT+L
Sbjct: 154 LVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVG----GTVIFCSDGCQAIVDTGTSL 209
Query: 318 TYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRP 355
P S + + + I A +G Y + C ++S P
Sbjct: 210 ITGP----SGDIKQLQNYIGATATDGEYGVDCSTLSLMP 244
|
Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. The aspartic acid residues act together to allow a water molecule to attack the peptide bond. One aspartic acid residue (in its deprotonated form) activates the attacking water molecule, whereas the other aspartic acid residue (in its protonated form) polarizes the peptide carbonyl, increasing its susceptibility to attack. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 316 |
| >gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 71/333 (21%), Positives = 124/333 (37%), Gaps = 70/333 (21%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
+Y I IGTPP V DTGS +W C + ++ +SSTY
Sbjct: 6 QYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTY------ 59
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPEI 203
+ +++ YG S S G L+ +TV++G G+AV P I
Sbjct: 60 -------------VKNGTEFAIQYGSGSLS-GYLSQDTVSIGGLQVEGQLFGEAVKQPGI 105
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDASL---------ISQMKTTIAGKFSYCLVQQSST 254
F +K DGI+G+ S+ I K FS+ L +
Sbjct: 106 TF---------IAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDA 156
Query: 255 KINFGTNGIVSG------SGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGD 308
+ G ++ G +G + + K ++ + +D + VG ++ G +
Sbjct: 157 QP--GGELMLGGTDPKYYTGDLH--YVNVTRKAYWQIHMDQVDVGSG----LTLCKGGCE 208
Query: 309 IVIDSGTTLTYLPPAYASKLLSVMSSMIAAQP-VEGPYDL-CYSISSRPRFPEVTIHFRD 366
++D+GT+L P + + + I A P ++G Y + C I + P ++
Sbjct: 209 AIVDTGTSLITGP----VEEVRALQKAIGAVPLIQGEYMIDCEKIPT---LPVISFSLGG 261
Query: 367 ADVKLSTSNVFMNIS---EDLVCSVFNARDDIP 396
L+ + + +S + S F D P
Sbjct: 262 KVYPLTGEDYILKVSQRGTTICLSGFMGLDIPP 294
|
Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 325 |
| >gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 49/232 (21%), Positives = 81/232 (34%), Gaps = 48/232 (20%)
Query: 24 AQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQAD 83
S +L ++ + K + +R +N+ +R+ +K Q
Sbjct: 50 GYPRMLSNQLFNKPAHKVELHRFALLKKKRKKNSEKGYISRVLTKHKYLETKDPNGLQ-- 107
Query: 84 IIPNVGEYLI---------RISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPL 134
+ + L+ I +GTPP + V DTGS +W + C C
Sbjct: 108 ---YLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRK-- 162
Query: 135 FDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYS-----VSYGDDSFSNGDLATETVT 189
FDP++SSTY SAE +Y ++ G D+ G L + +
Sbjct: 163 FDPKKSSTYT----------KLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQS 212
Query: 190 VGSTSGQAVALPEIV--FGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTT 239
+G +A+ E + F + DG+VGLG D K
Sbjct: 213 IG------LAIEESLHPFA---------DLPFDGLVGLGFPDKDFKESKKAL 249
|
Length = 482 |
| >gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 48/147 (32%), Positives = 63/147 (42%), Gaps = 44/147 (29%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQ----RSSTYKY 145
+Y I IGTPP + + DTGS +W P S+CY F + +SSTYK
Sbjct: 10 QYFGEIGIGTPPQKFTVIFDTGSSNLWV-----PSSKCYFSIACYFHSKYKSSKSSTYK- 63
Query: 146 LSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVF 205
K+ SA S+ YG S S G + ++VTVG + + VF
Sbjct: 64 ------------KNGTSA------SIQYGTGSIS-GFFSQDSVTVGD-----LVVKNQVF 99
Query: 206 GCGTKNGG------KFNSKTDGIVGLG 226
TK G KF DGI+GLG
Sbjct: 100 IEATKEPGLTFLLAKF----DGILGLG 122
|
Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| PLN03146 | 431 | aspartyl protease family protein; Provisional | 100.0 | |
| PTZ00165 | 482 | aspartyl protease; Provisional | 100.0 | |
| cd05478 | 317 | pepsin_A Pepsin A, aspartic protease produced in g | 100.0 | |
| cd05490 | 325 | Cathepsin_D2 Cathepsin_D2, pepsin family of protei | 100.0 | |
| KOG1339 | 398 | consensus Aspartyl protease [Posttranslational mod | 100.0 | |
| cd05486 | 316 | Cathespin_E Cathepsin E, non-lysosomal aspartic pr | 100.0 | |
| cd06096 | 326 | Plasmepsin_5 Plasmepsins are a class of aspartic p | 100.0 | |
| cd06098 | 317 | phytepsin Phytepsin, a plant homolog of mammalian | 100.0 | |
| cd05477 | 318 | gastricsin Gastricsins, asparate proteases produce | 100.0 | |
| cd05487 | 326 | renin_like Renin stimulates production of angioten | 100.0 | |
| PTZ00147 | 453 | plasmepsin-1; Provisional | 100.0 | |
| cd05488 | 320 | Proteinase_A_fungi Fungal Proteinase A , aspartic | 100.0 | |
| cd05472 | 299 | cnd41_like Chloroplast Nucleoids DNA-binding Prote | 100.0 | |
| cd05485 | 329 | Cathepsin_D_like Cathepsin_D_like, pepsin family o | 100.0 | |
| PTZ00013 | 450 | plasmepsin 4 (PM4); Provisional | 100.0 | |
| cd05473 | 364 | beta_secretase_like Beta-secretase, aspartic-acid | 100.0 | |
| cd05489 | 362 | xylanase_inhibitor_I_like TAXI-I inhibits degradat | 100.0 | |
| cd05475 | 273 | nucellin_like Nucellins, plant aspartic proteases | 100.0 | |
| cd06097 | 278 | Aspergillopepsin_like Aspergillopepsin_like, aspar | 100.0 | |
| cd05476 | 265 | pepsin_A_like_plant Chroloplast Nucleoids DNA-bind | 100.0 | |
| PF00026 | 317 | Asp: Eukaryotic aspartyl protease The Prosite entr | 100.0 | |
| cd05474 | 295 | SAP_like SAPs, pepsin-like proteinases secreted fr | 100.0 | |
| cd05471 | 283 | pepsin_like Pepsin-like aspartic proteases, biloba | 100.0 | |
| PF14543 | 164 | TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A | 99.97 | |
| PF14541 | 161 | TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D | 99.92 | |
| cd05470 | 109 | pepsin_retropepsin_like Cellular and retroviral pe | 99.91 | |
| cd05483 | 96 | retropepsin_like_bacteria Bacterial aspartate prot | 98.22 | |
| TIGR02281 | 121 | clan_AA_DTGA clan AA aspartic protease, TIGR02281 | 97.01 | |
| PF13650 | 90 | Asp_protease_2: Aspartyl protease | 96.82 | |
| cd05479 | 124 | RP_DDI RP_DDI; retropepsin-like domain of DNA dama | 95.67 | |
| PF11925 | 370 | DUF3443: Protein of unknown function (DUF3443); In | 95.59 | |
| cd05479 | 124 | RP_DDI RP_DDI; retropepsin-like domain of DNA dama | 94.97 | |
| PF08284 | 135 | RVP_2: Retroviral aspartyl protease; InterPro: IPR | 92.52 | |
| cd05484 | 91 | retropepsin_like_LTR_2 Retropepsins_like_LTR, peps | 92.09 | |
| cd06095 | 86 | RP_RTVL_H_like Retropepsin of the RTVL_H family of | 89.71 | |
| PF13975 | 72 | gag-asp_proteas: gag-polyprotein putative aspartyl | 89.68 | |
| TIGR03698 | 107 | clan_AA_DTGF clan AA aspartic protease, AF_0612 fa | 88.04 | |
| TIGR02281 | 121 | clan_AA_DTGA clan AA aspartic protease, TIGR02281 | 86.16 | |
| COG3577 | 215 | Predicted aspartyl protease [General function pred | 84.88 | |
| PF00077 | 100 | RVP: Retroviral aspartyl protease The Prosite entr | 84.38 | |
| PF02160 | 201 | Peptidase_A3: Cauliflower mosaic virus peptidase ( | 82.55 |
| >PLN03146 aspartyl protease family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=578.79 Aligned_cols=410 Identities=60% Similarity=1.004 Sum_probs=346.2
Q ss_pred HHHhhccccccCCCceEEEEeccCCCCCCCCCCCCChHHHHHHHHHhhHHhHhhhhcccCCCCCCcccceeecCCccEEE
Q 040562 14 LCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQADIIPNVGEYLI 93 (427)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 93 (427)
+.+..+....++..+++++|+||+++++|++.+.....++++++++|+.+|.+++.++... ...+..+...++++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~Y~v 87 (431)
T PLN03146 10 FSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS--PNDPQSDLISNGGEYLM 87 (431)
T ss_pred HHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc--CCccccCcccCCccEEE
Confidence 4455566666788899999999999999988777778899999999999999887543221 23344455667889999
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCCCCCCCCCCceeeee
Q 040562 94 RISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIKDSCSAEGNCRYSVS 172 (427)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~~~c~~~~~~~~~~~ 172 (427)
+|.||||||++.|++||||+++||+|.+|. .|..+.++.|||++|+||+.++|.++.|+. .....|...+.|.|.+.
T Consensus 88 ~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~--~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 88 NISIGTPPVPILAIADTGSDLIWTQCKPCD--DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS 165 (431)
T ss_pred EEEcCCCCceEEEEECCCCCcceEcCCCCc--ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence 999999999999999999999999999998 898888999999999999999999999987 55446876677999999
Q ss_pred eCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhhhhccCceEEEeecCC
Q 040562 173 YGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQS 252 (427)
Q Consensus 173 Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~~~~ 252 (427)
|++|+.+.|.+++|+|+|++.....+.++++.|||++...+.|....+||||||++..++++|++....++|||||.+..
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~ 245 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLS 245 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCC
Confidence 99999878999999999998644445789999999998877664468999999999999999998665679999996521
Q ss_pred -----CceeeeCCCCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccC---CCCCcEEEccCCccccccHHH
Q 040562 253 -----STKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS---NPGGDIVIDSGTTLTYLPPAY 324 (427)
Q Consensus 253 -----~G~l~fGg~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~---~~~~~~iiDSGt~~~~lp~~~ 324 (427)
.|.|+||+.+++.+.++.|+|++..+.+.+|.|+|++|+||++.+.++... .+..++||||||++++||+++
T Consensus 246 ~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~ 325 (431)
T PLN03146 246 SDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDF 325 (431)
T ss_pred CCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHH
Confidence 299999997667666689999996544679999999999999988764321 234689999999999999999
Q ss_pred HHHHHHHHHhhhccCCCc---CCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEEEEeCCCcceechh
Q 040562 325 ASKLLSVMSSMIAAQPVE---GPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNI 401 (427)
Q Consensus 325 ~~~i~~~l~~~~~~~~~~---~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~i~~~~~~~ilG~~ 401 (427)
|++|.+++.+.+...... ..+++|+.......+|+|+|+|+|+++.|++++|+++..++..|+++.+..+.||||+.
T Consensus 326 y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~ 405 (431)
T PLN03146 326 YSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPTSSIAIFGNL 405 (431)
T ss_pred HHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecCCCceEECee
Confidence 999999998887532221 34678997643357899999999999999999999988777899998776667999999
Q ss_pred hhcceEEEEeCCCCEEEEeeCCCCCC
Q 040562 402 MQTNFLIGYDIEGRTVSFKPTDCSKQ 427 (427)
Q Consensus 402 fl~~~y~vfD~~~~riGfa~~~c~~~ 427 (427)
|||++|++||++++|||||+.+|+++
T Consensus 406 ~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 406 AQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred eEeeEEEEEECCCCEEeeecCCcCcC
Confidence 99999999999999999999999874
|
|
| >PTZ00165 aspartyl protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-59 Score=466.08 Aligned_cols=306 Identities=22% Similarity=0.410 Sum_probs=255.1
Q ss_pred cccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 79 VSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
..+++.++.+.+|+++|+||||||+|.|+|||||+++||+|..|....| +.++.|||++|+||+.+.+..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C--~~~~~yd~s~SSTy~~~~~~~-------- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGC--APHRKFDPKKSSTYTKLKLGD-------- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccc--cccCCCCccccCCcEecCCCC--------
Confidence 4566778899999999999999999999999999999999999985567 678999999999999843110
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh-----
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS----- 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----- 231 (427)
....+.+.|++|+.. |.+++|+|+|++. .++++.||++....+ .| ...+|||||||++..+
T Consensus 179 ------~~~~~~i~YGsGs~~-G~l~~DtV~ig~l-----~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~ 246 (482)
T PTZ00165 179 ------ESAETYIQYGTGECV-LALGKDTVKIGGL-----KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESK 246 (482)
T ss_pred ------ccceEEEEeCCCcEE-EEEEEEEEEECCE-----EEccEEEEEEEeccccccccccccceeecCCCcccccccC
Confidence 002678999999887 9999999999987 999999999998765 45 5678999999998652
Q ss_pred --------hHHhhhhhccCceEEEeecCCC--ceeeeCC-CCccc--CCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 232 --------LISQMKTTIAGKFSYCLVQQSS--TKINFGT-NGIVS--GSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 232 --------l~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg-~~~~~--g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
+.+| +.+.+++||+||.+... |+|+||| +.++. +..+.|+|+.. ..+|.|++++|+|+++.+.
T Consensus 247 ~~~p~~~~l~~q-gli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~---~~yW~i~l~~i~vgg~~~~ 322 (482)
T PTZ00165 247 KALPIVDNIKKQ-NLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS---TDYWEIEVVDILIDGKSLG 322 (482)
T ss_pred CCCCHHHHHHHc-CCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc---cceEEEEeCeEEECCEEee
Confidence 3344 56789999999986533 9999999 55554 44599999986 7899999999999998776
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCc-----EEEecC
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDA-----DVKLST 373 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~-----~~~l~~ 373 (427)
.+ .....+|+||||+++++|++++++|.+++... .+|+... .+|+|+|+|+|. +|.|+|
T Consensus 323 ~~---~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----------~~C~~~~---~lP~itf~f~g~~g~~v~~~l~p 386 (482)
T PTZ00165 323 FC---DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----------EDCSNKD---SLPRISFVLEDVNGRKIKFDMDP 386 (482)
T ss_pred ec---CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc----------ccccccc---cCCceEEEECCCCCceEEEEEch
Confidence 53 23678999999999999999999999887532 3598653 689999999864 899999
Q ss_pred CceEEEe----CCCeEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 374 SNVFMNI----SEDLVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 374 ~~y~~~~----~~~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
++|+++. ..+..|+. |++.+ +.||||++|||++|+|||.+|+|||||+++|+.
T Consensus 387 ~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 387 EDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred HHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 9999974 23468975 77532 579999999999999999999999999999863
|
|
| >cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=435.87 Aligned_cols=297 Identities=26% Similarity=0.438 Sum_probs=252.3
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+.+..+.+|+++|.||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c--~~~~~f~~~~Sst~~~~~--------------- 65 (317)
T cd05478 3 LTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC--SNHNRFNPRQSSTYQSTG--------------- 65 (317)
T ss_pred cccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccc--cccCcCCCCCCcceeeCC---------------
Confidence 445668999999999999999999999999999999999984456 578999999999999865
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh------hHH
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------LIS 234 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------l~~ 234 (427)
+.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+.+ ....+||||||++..+ ++.
T Consensus 66 ----~~~~~~yg~gs~-~G~~~~D~v~ig~~-----~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (317)
T cd05478 66 ----QPLSIQYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFD 135 (317)
T ss_pred ----cEEEEEECCceE-EEEEeeeEEEECCE-----EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHH
Confidence 799999999985 59999999999987 89999999998876644 3458999999987543 444
Q ss_pred hh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCC
Q 040562 235 QM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307 (427)
Q Consensus 235 ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 307 (427)
|| +.|.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. ..+.
T Consensus 136 ~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~v~v~g~~~~~----~~~~ 207 (317)
T cd05478 136 NMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGS-LNWVPVTA---ETYWQITVDSVTINGQVVAC----SGGC 207 (317)
T ss_pred HHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCc-eEEEECCC---CcEEEEEeeEEEECCEEEcc----CCCC
Confidence 43 56778999999998653 9999999 4567776 99999975 68999999999999998765 3367
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEE
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCS 387 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~ 387 (427)
.++|||||+++++|++++++|++++...... ...+..+|+... .+|+|+|+|+|+++.||+++|+.+. +..|+
T Consensus 208 ~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~--~~~~~~~C~~~~---~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C~ 280 (317)
T cd05478 208 QAIVDTGTSLLVGPSSDIANIQSDIGASQNQ--NGEMVVNCSSIS---SMPDVVFTINGVQYPLPPSAYILQD--QGSCT 280 (317)
T ss_pred EEEECCCchhhhCCHHHHHHHHHHhCCcccc--CCcEEeCCcCcc---cCCcEEEEECCEEEEECHHHheecC--CCEEe
Confidence 8999999999999999999999998654321 113556798653 6899999999999999999999875 46898
Q ss_pred E-EEeCC--CcceechhhhcceEEEEeCCCCEEEEee
Q 040562 388 V-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 388 ~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
+ |+..+ +.||||++|||++|+|||++++|||||+
T Consensus 281 ~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 281 SGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 7 87754 6799999999999999999999999996
|
Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which |
| >cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-57 Score=434.89 Aligned_cols=296 Identities=22% Similarity=0.406 Sum_probs=245.7
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 86 PNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
+.+.+|+++|.||||+|+|.|+|||||+++||+|..|.. ..| ..++.|||++|+|++...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~~---------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIAC--WLHHKYNSSKSSTYVKNG---------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccc--cCcCcCCcccCcceeeCC----------------
Confidence 458899999999999999999999999999999999972 256 467899999999998743
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hHHh
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LISQ 235 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~~q 235 (427)
+.|.+.|++|+. .|.+++|+|+|++. .++++.||+++...+ .| ....+||||||++..+ ++++
T Consensus 64 ---~~~~i~Yg~G~~-~G~~~~D~v~~g~~-----~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 64 ---TEFAIQYGSGSL-SGYLSQDTVSIGGL-----QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred ---cEEEEEECCcEE-EEEEeeeEEEECCE-----EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHH
Confidence 899999999986 59999999999987 899999999988765 34 4568999999997654 2333
Q ss_pred h---hhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 236 M---KTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 236 l---~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++|+|+++.... ...
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~-l~~~~~~~---~~~w~v~l~~i~vg~~~~~~----~~~ 206 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGD-LHYVNVTR---KAYWQIHMDQVDVGSGLTLC----KGG 206 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCc-eEEEEcCc---ceEEEEEeeEEEECCeeeec----CCC
Confidence 3 5578899999998642 29999999 4556666 99999975 67999999999998874332 235
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--Ce
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DL 384 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~ 384 (427)
..+||||||+++++|++++++|.+++.+.. ... ..+..+|+... .+|+|+|+|+|++++|+|++|+++... ..
T Consensus 207 ~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~-~~~-~~~~~~C~~~~---~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~ 281 (325)
T cd05490 207 CEAIVDTGTSLITGPVEEVRALQKAIGAVP-LIQ-GEYMIDCEKIP---TLPVISFSLGGKVYPLTGEDYILKVSQRGTT 281 (325)
T ss_pred CEEEECCCCccccCCHHHHHHHHHHhCCcc-ccC-CCEEecccccc---cCCCEEEEECCEEEEEChHHeEEeccCCCCC
Confidence 789999999999999999999999986531 111 14567898653 689999999999999999999987543 35
Q ss_pred EEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEee
Q 040562 385 VCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 385 ~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
.|++ |+.. +..||||++|||++|+|||++++|||||+
T Consensus 282 ~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 282 ICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 7986 7642 25799999999999999999999999996
|
Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank |
| >KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=442.60 Aligned_cols=335 Identities=42% Similarity=0.762 Sum_probs=276.4
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIKDS 160 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~~~ 160 (427)
......+++|+++|+||||||+|.|++||||+++||+|.+|.. .|..+.++.|||++|+||+.+.|.+..|.. .. .
T Consensus 38 ~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~-~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~--~ 114 (398)
T KOG1339|consen 38 SLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS-ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ--S 114 (398)
T ss_pred ccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc-cccccCCCccCccccccccccCCCCcccccccc--C
Confidence 3445577899999999999999999999999999999999973 587655666999999999999999999998 44 3
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-C-CCCceEeecCCCCChhHHhhhh
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-N-SKTDGIVGLGGGDASLISQMKT 238 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~-~~~~GilGLg~~~~sl~~ql~~ 238 (427)
|...+.|.|.+.|++|+.++|++++|+|+|++.+ .+.++++.|||+....+.+ . ..++||||||++.+++.+|+..
T Consensus 115 ~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~ 192 (398)
T KOG1339|consen 115 CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPS 192 (398)
T ss_pred cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCCCccceeeccc
Confidence 7777889999999998777799999999999832 1278889999999997643 2 5689999999999999999876
Q ss_pred hcc--CceEEEeecCC-----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccC--CCCC
Q 040562 239 TIA--GKFSYCLVQQS-----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS--NPGG 307 (427)
Q Consensus 239 i~~--~~Fs~~l~~~~-----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~--~~~~ 307 (427)
... ++||+||.+.. .|.|+||+ ..++.+. +.|+|++.... .+|.|++.+|+|+++. ...... ....
T Consensus 193 ~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~-l~~tPl~~~~~-~~y~v~l~~I~vgg~~-~~~~~~~~~~~~ 269 (398)
T KOG1339|consen 193 FYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGS-LTYTPLLSNPS-TYYQVNLDGISVGGKR-PIGSSLFCTDGG 269 (398)
T ss_pred ccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCc-eEEEeeccCCC-ccEEEEEeEEEECCcc-CCCcceEecCCC
Confidence 533 35999999874 39999999 4445554 99999998643 5999999999999865 222111 2258
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhh--ccCCCcCCCcceeccCCC-CccCeEEEEEe-CcEEEecCCceEEEeCCC
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMI--AAQPVEGPYDLCYSISSR-PRFPEVTIHFR-DADVKLSTSNVFMNISED 383 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~--~~~~~~~~~~~C~~~~~~-~~~P~i~~~f~-g~~~~l~~~~y~~~~~~~ 383 (427)
++|+||||++++||+++|++|.+++.+.+ ..... .+.+.|+..... ..+|+|+|+|+ |+.|.+++++|+++..++
T Consensus 270 ~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~ 348 (398)
T KOG1339|consen 270 GAIIDSGTSLTYLPTSAYNALREAIGAEVSVVGTDG-EYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDG 348 (398)
T ss_pred CEEEECCcceeeccHHHHHHHHHHHHhheeccccCC-ceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECCC
Confidence 99999999999999999999999999864 22111 456789977421 13899999999 799999999999998765
Q ss_pred eE-EEEEE-eCC--CcceechhhhcceEEEEeCC-CCEEEEee--CCCC
Q 040562 384 LV-CSVFN-ARD--DIPLYGNIMQTNFLIGYDIE-GRTVSFKP--TDCS 425 (427)
Q Consensus 384 ~~-C~~i~-~~~--~~~ilG~~fl~~~y~vfD~~-~~riGfa~--~~c~ 425 (427)
.. |+++. ..+ ..||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 349 ~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 349 GGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 44 99944 433 38999999999999999999 99999999 7786
|
|
| >cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-57 Score=431.52 Aligned_cols=289 Identities=26% Similarity=0.434 Sum_probs=243.7
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCceee
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYS 170 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (427)
|+++|+||||||+++|+|||||+++||+|..|....| ..++.|||++|+|++... +.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C--~~~~~y~~~~SsT~~~~~-------------------~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQAC--TKHNRFQPSESSTYVSNG-------------------EAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CccceECCCCCcccccCC-------------------cEEE
Confidence 8999999999999999999999999999999985567 567899999999998865 8999
Q ss_pred eeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh----------hHHhhhh
Q 040562 171 VSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS----------LISQMKT 238 (427)
Q Consensus 171 ~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----------l~~ql~~ 238 (427)
+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ....+||||||++..+ +.+| +.
T Consensus 60 i~Yg~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~q-g~ 132 (316)
T cd05486 60 IQYGTGSL-TGIIGIDQVTVEGI-----TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQ-NL 132 (316)
T ss_pred EEeCCcEE-EEEeeecEEEECCE-----EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhc-CC
Confidence 99999986 59999999999987 899999999887665 34 4578999999997654 2344 55
Q ss_pred hccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEc
Q 040562 239 TIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312 (427)
Q Consensus 239 i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiD 312 (427)
+..++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. .++|.|++++|+|+++.+.. .....++||
T Consensus 133 i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~-l~~~pi~~---~~~w~v~l~~i~v~g~~~~~----~~~~~aiiD 204 (316)
T cd05486 133 VELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQ-LNWVPVTV---QGYWQIQLDNIQVGGTVIFC----SDGCQAIVD 204 (316)
T ss_pred CCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccc-eEEEECCC---ceEEEEEeeEEEEecceEec----CCCCEEEEC
Confidence 67899999998642 29999999 4567776 99999986 78999999999999987654 235789999
Q ss_pred cCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEe--CCCeEEEE-E
Q 040562 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNI--SEDLVCSV-F 389 (427)
Q Consensus 313 SGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~--~~~~~C~~-i 389 (427)
|||+++++|++++++|.+++..... ...+..+|+... .+|+|+|+|+|++++|++++|++.. ..+..|++ |
T Consensus 205 TGTs~~~lP~~~~~~l~~~~~~~~~---~~~~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~ 278 (316)
T cd05486 205 TGTSLITGPSGDIKQLQNYIGATAT---DGEYGVDCSTLS---LMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGF 278 (316)
T ss_pred CCcchhhcCHHHHHHHHHHhCCccc---CCcEEEeccccc---cCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEE
Confidence 9999999999999999888754311 113556898543 6899999999999999999999875 23468986 7
Q ss_pred EeCC------CcceechhhhcceEEEEeCCCCEEEEee
Q 040562 390 NARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 390 ~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
+..+ +.||||++|||++|+|||++++|||||+
T Consensus 279 ~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 279 QGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 6532 4699999999999999999999999996
|
Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt |
| >cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=429.72 Aligned_cols=298 Identities=26% Similarity=0.463 Sum_probs=246.5
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCce
Q 040562 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCR 168 (427)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (427)
++|+++|+||||+|++.|+|||||+++||+|..|. .|..+.++.|||++|+|++.+.|++..|.... .|. .+.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~--~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~--~~~-~~~~~ 76 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK--NCGIHMEPPYNLNNSITSSILYCDCNKCCYCL--SCL-NNKCE 76 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC--CcCCCCCCCcCcccccccccccCCCccccccC--cCC-CCcCc
Confidence 58999999999999999999999999999999998 88777789999999999999999999995421 343 35599
Q ss_pred eeeeeCCCCeEEEEEEEEEEEEcCCCCC--ceecCcEEEEeEeecCCCC-CCCCceEeecCCCCCh--------hHHhhh
Q 040562 169 YSVSYGDDSFSNGDLATETVTVGSTSGQ--AVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDAS--------LISQMK 237 (427)
Q Consensus 169 ~~~~Y~~g~~~~G~~~~D~v~ig~~~~~--~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s--------l~~ql~ 237 (427)
|.+.|++|+.+.|.+++|+|+|++.... .....++.|||+....+.| ....+||||||+...+ +..| .
T Consensus 77 ~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~-~ 155 (326)
T cd06096 77 YSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK-R 155 (326)
T ss_pred EEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh-c
Confidence 9999999987779999999999976211 0012357899999887766 5678999999998643 2233 2
Q ss_pred hhc--cCceEEEeecCCCceeeeCC--CCcccC---------CCeeeeccccCCCCccEEEEeeEEEecceE--eeeecc
Q 040562 238 TTI--AGKFSYCLVQQSSTKINFGT--NGIVSG---------SGVVSTPLLAKNPKTFYSLTLDAISVGDQR--LGVISG 302 (427)
Q Consensus 238 ~i~--~~~Fs~~l~~~~~G~l~fGg--~~~~~g---------~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~--~~~~~~ 302 (427)
.+. .++||+||.+.. |+|+||| +.++.+ .++.|+|+.. ..+|.|++++|+|+++. ...
T Consensus 156 ~~~~~~~~FS~~l~~~~-G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~---~~~y~v~l~~i~vg~~~~~~~~--- 228 (326)
T cd06096 156 PKLKKDKIFSICLSEDG-GELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR---KYYYYVKLEGLSVYGTTSNSGN--- 228 (326)
T ss_pred ccccCCceEEEEEcCCC-eEEEECccChhhhcccccccccccCCceEEeccC---CceEEEEEEEEEEcccccceec---
Confidence 233 499999999754 9999999 344441 3499999986 57999999999999886 222
Q ss_pred CCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEe-CcEEEecCCceEEEeC
Q 040562 303 SNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFR-DADVKLSTSNVFMNIS 381 (427)
Q Consensus 303 ~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~~~y~~~~~ 381 (427)
.....++|||||++++||++++++|.+++ |+|+|+|+ |++++++|++|++...
T Consensus 229 -~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------P~i~~~f~~g~~~~i~p~~y~~~~~ 282 (326)
T cd06096 229 -TKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------PTITIIFENNLKIDWKPSSYLYKKE 282 (326)
T ss_pred -ccCCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------CcEEEEEcCCcEEEECHHHhccccC
Confidence 34788999999999999999999997765 89999998 7999999999999876
Q ss_pred CCeEEEEEEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCC
Q 040562 382 EDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425 (427)
Q Consensus 382 ~~~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~ 425 (427)
+...|+++...++.+|||++|||++|+|||++++|||||+++|.
T Consensus 283 ~~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 283 SFWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred CceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 55555557666678999999999999999999999999999994
|
The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l |
| >cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-56 Score=425.44 Aligned_cols=287 Identities=26% Similarity=0.435 Sum_probs=242.3
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP-PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
+.+..+.+|+++|+||||+|++.|+|||||+++||+|..|. ...| ..++.|||++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 3 LKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIAC--YFHSKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred ccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccc--cccCcCCcccCCCcccCC--------------
Confidence 34667899999999999999999999999999999999996 3468 467899999999998864
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh--------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS-------- 231 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s-------- 231 (427)
..+.+.|++|+.. |.+++|+|+|++. .++++.||++....+ .| ....+||||||++..+
T Consensus 67 -----~~~~i~Yg~G~~~-G~~~~D~v~ig~~-----~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~ 135 (317)
T cd06098 67 -----TSASIQYGTGSIS-GFFSQDSVTVGDL-----VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVW 135 (317)
T ss_pred -----CEEEEEcCCceEE-EEEEeeEEEECCE-----EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHH
Confidence 7899999999865 9999999999987 899999999987755 34 5678999999997654
Q ss_pred --hHHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccC
Q 040562 232 --LISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS 303 (427)
Q Consensus 232 --l~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 303 (427)
+.+| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++|+|+++.+...
T Consensus 136 ~~l~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~--- 207 (317)
T cd06098 136 YNMVEQ-GLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGE-HTYVPVTR---KGYWQFEMGDVLIGGKSTGFC--- 207 (317)
T ss_pred HHHHhc-CCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccc-eEEEecCc---CcEEEEEeCeEEECCEEeeec---
Confidence 2344 5678899999998642 29999999 5667777 99999985 679999999999999887653
Q ss_pred CCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC-
Q 040562 304 NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE- 382 (427)
Q Consensus 304 ~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~- 382 (427)
.....+||||||+++++|++++++|. +..+|+... .+|+|+|+|+|++++|++++|+++..+
T Consensus 208 ~~~~~aivDTGTs~~~lP~~~~~~i~--------------~~~~C~~~~---~~P~i~f~f~g~~~~l~~~~yi~~~~~~ 270 (317)
T cd06098 208 AGGCAAIADSGTSLLAGPTTIVTQIN--------------SAVDCNSLS---SMPNVSFTIGGKTFELTPEQYILKVGEG 270 (317)
T ss_pred CCCcEEEEecCCcceeCCHHHHHhhh--------------ccCCccccc---cCCcEEEEECCEEEEEChHHeEEeecCC
Confidence 23578999999999999999877663 235698653 689999999999999999999987543
Q ss_pred -CeEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEee
Q 040562 383 -DLVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 383 -~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
...|++ |+..+ ..||||++|||++|+|||++++|||||+
T Consensus 271 ~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 271 AAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 358986 76432 4799999999999999999999999995
|
Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro |
| >cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-56 Score=425.98 Aligned_cols=294 Identities=26% Similarity=0.471 Sum_probs=248.2
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCc
Q 040562 88 VGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNC 167 (427)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (427)
|.+|+++|.||||||++.|++||||+++||+|..|....| ..++.|||++|+|++... |
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C--~~~~~f~~~~SsT~~~~~-------------------~ 59 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQAC--TNHTKFNPSQSSTYSTNG-------------------E 59 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccc--cccCCCCcccCCCceECC-------------------c
Confidence 4689999999999999999999999999999999986667 567899999999999865 8
Q ss_pred eeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCCC------hhHHhh---
Q 040562 168 RYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGDA------SLISQM--- 236 (427)
Q Consensus 168 ~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~------sl~~ql--- 236 (427)
.|++.|++|+. .|.+++|+|+|++. .++++.|||+....+. + ....+||||||++.. +++.||
T Consensus 60 ~~~~~Yg~Gs~-~G~~~~D~i~~g~~-----~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 60 TFSLQYGSGSL-TGIFGYDTVTVQGI-----IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred EEEEEECCcEE-EEEEEeeEEEECCE-----EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 99999999986 49999999999987 8999999999987652 3 456799999998643 355554
Q ss_pred hhhccCceEEEeecCC---CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEE
Q 040562 237 KTTIAGKFSYCLVQQS---STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVI 311 (427)
Q Consensus 237 ~~i~~~~Fs~~l~~~~---~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ii 311 (427)
+.|.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++|+|+++.+... ..+..+||
T Consensus 134 g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~---~~~~~~ii 206 (318)
T cd05477 134 NLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQ-IYWTPVTS---ETYWQIGIQGFQINGQATGWC---SQGCQAIV 206 (318)
T ss_pred CCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCc-eEEEecCC---ceEEEEEeeEEEECCEEeccc---CCCceeeE
Confidence 4577899999998752 29999999 4567666 99999976 679999999999999887543 23567999
Q ss_pred ccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEE-EE
Q 040562 312 DSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSV-FN 390 (427)
Q Consensus 312 DSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~-i~ 390 (427)
||||+++++|++++++|++.+....... ..+..+|+... .+|+|+|+|+|+++.|++++|+... ...|+. |+
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~~~--~~~~~~C~~~~---~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~~~i~ 279 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQDQY--GQYVVNCNNIQ---NLPTLTFTINGVSFPLPPSAYILQN--NGYCTVGIE 279 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCccccC--CCEEEeCCccc---cCCcEEEEECCEEEEECHHHeEecC--CCeEEEEEE
Confidence 9999999999999999999987653321 14567798653 6899999999999999999999875 457974 86
Q ss_pred eC------C-CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 391 AR------D-DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 391 ~~------~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
+. + ..||||++|||++|++||++++|||||++
T Consensus 280 ~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 280 PTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 43 1 46999999999999999999999999985
|
Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten |
| >cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-56 Score=426.26 Aligned_cols=295 Identities=26% Similarity=0.450 Sum_probs=248.9
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+..+.+|+++|+||||+|+++|++||||+++||++..|.. ..| ..++.|||++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTAC--VTHNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhh--cccCcCCCCCCeeeeECC---------------
Confidence 4568899999999999999999999999999999998872 246 567899999999999865
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh---------
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS--------- 231 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s--------- 231 (427)
|.|++.|++|++ .|.+++|+|+|++. .+ ++.||++..... .+ ....+||||||++..+
T Consensus 66 ----~~~~~~Yg~g~~-~G~~~~D~v~~g~~-----~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 134 (326)
T cd05487 66 ----TEFTIHYASGTV-KGFLSQDIVTVGGI-----PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFD 134 (326)
T ss_pred ----EEEEEEeCCceE-EEEEeeeEEEECCE-----Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHH
Confidence 899999999985 59999999999986 55 478999987653 34 4568999999997654
Q ss_pred -hHHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 232 -LISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 232 -l~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
|.+| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++++|+++.+.. .
T Consensus 135 ~L~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~-l~~~~~~~---~~~w~v~l~~i~vg~~~~~~----~ 205 (326)
T cd05487 135 NIMSQ-GVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGD-FHYINTSK---TGFWQIQMKGVSVGSSTLLC----E 205 (326)
T ss_pred HHHhc-CCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCc-eEEEECCc---CceEEEEecEEEECCEEEec----C
Confidence 5666 7788999999998753 29999999 5567776 99999875 67999999999999987754 2
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE-- 382 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~-- 382 (427)
.+..++|||||+++++|++++++|++++.+... ...+..+|+... .+|+|+|+|+|.+++|++++|+++..+
T Consensus 206 ~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~---~~~y~~~C~~~~---~~P~i~f~fgg~~~~v~~~~yi~~~~~~~ 279 (326)
T cd05487 206 DGCTAVVDTGASFISGPTSSISKLMEALGAKER---LGDYVVKCNEVP---TLPDISFHLGGKEYTLSSSDYVLQDSDFS 279 (326)
T ss_pred CCCEEEECCCccchhCcHHHHHHHHHHhCCccc---CCCEEEeccccC---CCCCEEEEECCEEEEeCHHHhEEeccCCC
Confidence 357899999999999999999999999865432 124567898653 689999999999999999999998643
Q ss_pred CeEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 383 DLVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 383 ~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
+..|+. |+..+ +.||||++|||++|+|||++++|||||++
T Consensus 280 ~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 280 DKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 568976 77531 47999999999999999999999999985
|
Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r |
| >PTZ00147 plasmepsin-1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-55 Score=431.75 Aligned_cols=299 Identities=20% Similarity=0.347 Sum_probs=246.0
Q ss_pred cccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 79 VSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
...++.+..+.+|+++|+||||||++.|+|||||+++||+|..|....| +.++.|||++|+|++...
T Consensus 128 ~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C--~~~~~yd~s~SsT~~~~~----------- 194 (453)
T PTZ00147 128 DNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGC--ETKNLYDSSKSKTYEKDG----------- 194 (453)
T ss_pred CeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccc--cCCCccCCccCcceEECC-----------
Confidence 3445557788999999999999999999999999999999999985556 678899999999999865
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC---CC-CCCCceEeecCCCCCh---
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG---KF-NSKTDGIVGLGGGDAS--- 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s--- 231 (427)
+.|++.|++|++. |.+++|+|+||+. .++ ..|+++.+..+ .+ ....|||||||++..+
T Consensus 195 --------~~f~i~Yg~Gsvs-G~~~~DtVtiG~~-----~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~ 259 (453)
T PTZ00147 195 --------TKVEMNYVSGTVS-GFFSKDLVTIGNL-----SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGS 259 (453)
T ss_pred --------CEEEEEeCCCCEE-EEEEEEEEEECCE-----EEE-EEEEEEEeccCcccccccccccceecccCCcccccc
Confidence 8999999999865 9999999999986 777 57888876654 12 3578999999998654
Q ss_pred -------hHHhhhhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeee
Q 040562 232 -------LISQMKTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVI 300 (427)
Q Consensus 232 -------l~~ql~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~ 300 (427)
|..| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|.++ +.+++...
T Consensus 260 ~~p~~~~L~~q-g~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~-l~y~pl~~---~~~W~V~l~-~~vg~~~~--- 330 (453)
T PTZ00147 260 VDPYVVELKNQ-NKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGP-LTYEKLNH---DLYWQVDLD-VHFGNVSS--- 330 (453)
T ss_pred CCCHHHHHHHc-CCCCccEEEEEecCCCCCCeEEEECCcChhhcCCc-eEEEEcCC---CceEEEEEE-EEECCEec---
Confidence 2334 5678899999998753 29999999 5567776 99999974 679999998 47766421
Q ss_pred ccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEe
Q 040562 301 SGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNI 380 (427)
Q Consensus 301 ~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~ 380 (427)
....+||||||+++++|++++++|.+++..... .....+..+|+. ..+|+|+|+|+|.+++|+|++|+.+.
T Consensus 331 ----~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~-~~~~~y~~~C~~----~~lP~~~f~f~g~~~~L~p~~yi~~~ 401 (453)
T PTZ00147 331 ----EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV-PFLPLYVTTCNN----TKLPTLEFRSPNKVYTLEPEYYLQPI 401 (453)
T ss_pred ----CceeEEECCCCchhcCCHHHHHHHHHHhCCeec-CCCCeEEEeCCC----CCCCeEEEEECCEEEEECHHHheecc
Confidence 267899999999999999999999999865321 122245668985 26899999999999999999999764
Q ss_pred CC--CeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 381 SE--DLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 381 ~~--~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
.+ ...|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 402 EDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 32 357986 87753 579999999999999999999999999987
|
|
| >cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=423.18 Aligned_cols=295 Identities=24% Similarity=0.427 Sum_probs=247.9
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+.++.+.+|+++|+||||+|++.|+|||||+++||+|..|....| ..++.|+|++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C--~~~~~y~~~~Sst~~~~~--------------- 65 (320)
T cd05488 3 LTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIAC--FLHSKYDSSASSTYKANG--------------- 65 (320)
T ss_pred ccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCccc--CCcceECCCCCcceeeCC---------------
Confidence 345568899999999999999999999999999999999985568 467899999999998754
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCCChh--------
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGDASL-------- 232 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~sl-------- 232 (427)
|.+.+.|++|+. .|.+++|+|+|++. .++++.|||+....+. + ....+||||||++..+.
T Consensus 66 ----~~~~~~y~~g~~-~G~~~~D~v~ig~~-----~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (320)
T cd05488 66 ----TEFKIQYGSGSL-EGFVSQDTLSIGDL-----TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFY 135 (320)
T ss_pred ----CEEEEEECCceE-EEEEEEeEEEECCE-----EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHH
Confidence 899999999986 59999999999987 8999999999877653 3 35689999999987642
Q ss_pred --HHhhhhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 233 --ISQMKTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 233 --~~ql~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
.+| +.|.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++|+||++.+... .
T Consensus 136 ~l~~q-g~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~vg~~~~~~~-----~ 205 (320)
T cd05488 136 NMINQ-GLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGK-ITWLPVRR---KAYWEVELEKIGLGDEELELE-----N 205 (320)
T ss_pred HHHhc-CCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCc-eEEEeCCc---CcEEEEEeCeEEECCEEeccC-----C
Confidence 234 6678899999999752 39999999 4566666 99999986 679999999999999877653 5
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEE
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVC 386 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C 386 (427)
..++|||||+++++|++++++|.+++.+.... ...+..+|+... .+|+|+|+|+|+++.|++++|+++. +..|
T Consensus 206 ~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~~--~~~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~--~g~C 278 (320)
T cd05488 206 TGAAIDTGTSLIALPSDLAEMLNAEIGAKKSW--NGQYTVDCSKVD---SLPDLTFNFDGYNFTLGPFDYTLEV--SGSC 278 (320)
T ss_pred CeEEEcCCcccccCCHHHHHHHHHHhCCcccc--CCcEEeeccccc---cCCCEEEEECCEEEEECHHHheecC--CCeE
Confidence 68999999999999999999999988644221 113556798653 6899999999999999999999864 3479
Q ss_pred EE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEee
Q 040562 387 SV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 387 ~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
++ +...+ ..||||++|||++|+|||++++|||||+
T Consensus 279 ~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 279 ISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 87 66431 4699999999999999999999999996
|
Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro |
| >cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-55 Score=416.44 Aligned_cols=285 Identities=41% Similarity=0.785 Sum_probs=236.7
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCcee
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRY 169 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (427)
+|+++|.||||||++.|+|||||+++||+|.+ | |.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~-----c---------------------------------------~~~ 36 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQP-----C---------------------------------------CLY 36 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCC-----C---------------------------------------Cee
Confidence 69999999999999999999999999997653 3 478
Q ss_pred eeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhhhhccCceEEEee
Q 040562 170 SVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLV 249 (427)
Q Consensus 170 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~ 249 (427)
.+.|++|+.++|.+++|+|+|++.. .++++.|||+....+.+ ...+||||||+...++.+|+....+++||+||.
T Consensus 37 ~i~Yg~Gs~~~G~~~~D~v~ig~~~----~~~~~~Fg~~~~~~~~~-~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~ 111 (299)
T cd05472 37 QVSYGDGSYTTGDLATDTLTLGSSD----VVPGFAFGCGHDNEGLF-GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLP 111 (299)
T ss_pred eeEeCCCceEEEEEEEEEEEeCCCC----ccCCEEEECCccCCCcc-CCCCEEEECCCCcchHHHHhhHhhcCceEEEcc
Confidence 8999999987799999999999741 67899999999887655 478999999999999999987667899999998
Q ss_pred cCC---CceeeeCCCCcccCCCeeeeccccCCC-CccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccHHHH
Q 040562 250 QQS---STKINFGTNGIVSGSGVVSTPLLAKNP-KTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYA 325 (427)
Q Consensus 250 ~~~---~G~l~fGg~~~~~g~~~~~~p~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~ 325 (427)
+.. .|+|+|||.+...|+ +.|+|++..+. ..+|.|+|++|+|+++.+...........++|||||+++++|+++|
T Consensus 112 ~~~~~~~G~l~fGg~d~~~g~-l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~ 190 (299)
T cd05472 112 DRSSSSSGYLSFGAAASVPAG-ASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAY 190 (299)
T ss_pred CCCCCCCceEEeCCccccCCC-ceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHH
Confidence 743 399999993222555 99999997643 4789999999999999876532213457899999999999999999
Q ss_pred HHHHHHHHhhhccCC-Cc--CCCcceeccCC--CCccCeEEEEEe-CcEEEecCCceEEEe-CCCeEEEEEEeCC---Cc
Q 040562 326 SKLLSVMSSMIAAQP-VE--GPYDLCYSISS--RPRFPEVTIHFR-DADVKLSTSNVFMNI-SEDLVCSVFNARD---DI 395 (427)
Q Consensus 326 ~~i~~~l~~~~~~~~-~~--~~~~~C~~~~~--~~~~P~i~~~f~-g~~~~l~~~~y~~~~-~~~~~C~~i~~~~---~~ 395 (427)
++|.+++.+...... .. ..+..|+.... ...+|+|+|+|+ |+++.|++++|+++. ..+..|+++...+ ..
T Consensus 191 ~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~ 270 (299)
T cd05472 191 AALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGL 270 (299)
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCC
Confidence 999999988764221 11 23345986532 237999999998 799999999999843 3467899976542 57
Q ss_pred ceechhhhcceEEEEeCCCCEEEEeeCCC
Q 040562 396 PLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424 (427)
Q Consensus 396 ~ilG~~fl~~~y~vfD~~~~riGfa~~~c 424 (427)
||||+.|||++|+|||++++|||||+++|
T Consensus 271 ~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 271 SIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEEchHHccceEEEEECCCCEEeEecCCC
Confidence 99999999999999999999999999999
|
Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami |
| >cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-55 Score=420.84 Aligned_cols=298 Identities=25% Similarity=0.436 Sum_probs=249.5
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
.+.++.+.+|+++|+||||+|++.|++||||+++||+|..|.. ..| ..++.|||++|+|++...
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~Sst~~~~~------------ 68 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIAC--LLHNKYDSTKSSTYKKNG------------ 68 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccc--cCCCeECCcCCCCeEECC------------
Confidence 4567789999999999999999999999999999999999972 246 457889999999999865
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCChh-----
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDASL----- 232 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~sl----- 232 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ....+||||||++..+.
T Consensus 69 -------~~~~i~Y~~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p 135 (329)
T cd05485 69 -------TEFAIQYGSGSL-SGFLSTDTVSVGGV-----SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVP 135 (329)
T ss_pred -------eEEEEEECCceE-EEEEecCcEEECCE-----EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCC
Confidence 899999999985 59999999999987 889999999987765 34 46689999999986652
Q ss_pred -----HHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 233 -----ISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 233 -----~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
.+| +.+.+++||+||.+.. .|+|+||| +.++.|+ +.|+|+.. ..+|.|++++++|+++.+..
T Consensus 136 ~~~~l~~q-g~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~~~~i~v~~~~~~~-- 208 (329)
T cd05485 136 VFYNMVNQ-KLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGN-FTYLPVTR---KGYWQFKMDSVSVGEGEFCS-- 208 (329)
T ss_pred HHHHHHhC-CCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccc-eEEEEcCC---ceEEEEEeeEEEECCeeecC--
Confidence 334 5677899999998642 29999999 4566666 99999975 78999999999999987642
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS 381 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~ 381 (427)
....+||||||+++++|++++++|.+++...... . ..+..+|+... ++|+|+|+|+|+++.|++++|+++..
T Consensus 209 ---~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~-~-~~~~~~C~~~~---~~p~i~f~fgg~~~~i~~~~yi~~~~ 280 (329)
T cd05485 209 ---GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPII-G-GEYMVNCSAIP---SLPDITFVLGGKSFSLTGKDYVLKVT 280 (329)
T ss_pred ---CCcEEEEccCCcceeCCHHHHHHHHHHhCCcccc-C-CcEEEeccccc---cCCcEEEEECCEEeEEChHHeEEEec
Confidence 3568999999999999999999999988754221 1 14567898643 67999999999999999999999865
Q ss_pred C--CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEee
Q 040562 382 E--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 382 ~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
+ ...|++ |+.. ++.||||+.|||++|+|||++++|||||+
T Consensus 281 ~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 281 QMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 3 458986 7743 24799999999999999999999999985
|
Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an |
| >PTZ00013 plasmepsin 4 (PM4); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=427.06 Aligned_cols=301 Identities=19% Similarity=0.359 Sum_probs=245.4
Q ss_pred CcccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCC
Q 040562 78 KVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPI 157 (427)
Q Consensus 78 ~~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~ 157 (427)
....++.+..+.+|+++|+||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C--~~~~~yd~s~SsT~~~~~---------- 193 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGC--SIKNLYDSSKSKSYEKDG---------- 193 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccc--ccCCCccCccCcccccCC----------
Confidence 44455667788899999999999999999999999999999999985567 577899999999998865
Q ss_pred CCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC---CC-CCCCceEeecCCCCCh--
Q 040562 158 KDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG---KF-NSKTDGIVGLGGGDAS-- 231 (427)
Q Consensus 158 ~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s-- 231 (427)
+.|.+.|++|++ .|.+++|+|+||+. .++ ..|+++.+... .+ ...+|||||||++..+
T Consensus 194 ---------~~~~i~YG~Gsv-~G~~~~Dtv~iG~~-----~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 257 (450)
T PTZ00013 194 ---------TKVDITYGSGTV-KGFFSKDLVTLGHL-----SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIG 257 (450)
T ss_pred ---------cEEEEEECCceE-EEEEEEEEEEECCE-----EEc-cEEEEEEeccccccceecccccceecccCCccccc
Confidence 899999999985 59999999999986 776 57888776542 23 3568999999998654
Q ss_pred ----hHHhh---hhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeee
Q 040562 232 ----LISQM---KTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVI 300 (427)
Q Consensus 232 ----l~~ql---~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~ 300 (427)
++.+| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|+++ +.+|....
T Consensus 258 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~-L~y~pv~~---~~yW~I~l~-v~~G~~~~--- 329 (450)
T PTZ00013 258 SIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGN-ITYEKLNH---DLYWQIDLD-VHFGKQTM--- 329 (450)
T ss_pred cCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccc-eEEEEcCc---CceEEEEEE-EEECceec---
Confidence 33333 5578899999998653 39999999 5667777 99999975 679999998 66664332
Q ss_pred ccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEe
Q 040562 301 SGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNI 380 (427)
Q Consensus 301 ~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~ 380 (427)
....+|+||||+++++|+++++++.+++..... .....+..+|+. ..+|+|+|+|+|.+++|+|++|+.+.
T Consensus 330 ----~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~-~~~~~y~~~C~~----~~lP~i~F~~~g~~~~L~p~~Yi~~~ 400 (450)
T PTZ00013 330 ----QKANVIVDSGTTTITAPSEFLNKFFANLNVIKV-PFLPFYVTTCDN----KEMPTLEFKSANNTYTLEPEYYMNPL 400 (450)
T ss_pred ----cccceEECCCCccccCCHHHHHHHHHHhCCeec-CCCCeEEeecCC----CCCCeEEEEECCEEEEECHHHheehh
Confidence 256799999999999999999999998865322 112245677974 26899999999999999999998753
Q ss_pred C--CCeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 381 S--EDLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 381 ~--~~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
. ++..|+. |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 401 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 401 LDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 2 3468986 77643 579999999999999999999999999986
|
|
| >cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-53 Score=411.60 Aligned_cols=303 Identities=23% Similarity=0.383 Sum_probs=236.7
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCce
Q 040562 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCR 168 (427)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (427)
.+|+++|.||||+|+|.|+|||||+++||+|.+|. +.++.|||++|+|++..+ |.
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~------~~~~~f~~~~SsT~~~~~-------------------~~ 56 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP------FIHTYFHRELSSTYRDLG-------------------KG 56 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc------cccccCCchhCcCcccCC-------------------ce
Confidence 47999999999999999999999999999998774 356789999999999876 89
Q ss_pred eeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCC------------hhHH
Q 040562 169 YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDA------------SLIS 234 (427)
Q Consensus 169 ~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~------------sl~~ 234 (427)
|++.|++|+.. |.+++|+|+|++.... .+ .+.|+++....+.+ ....+||||||++.+ ++++
T Consensus 57 ~~i~Yg~Gs~~-G~~~~D~v~ig~~~~~--~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~ 132 (364)
T cd05473 57 VTVPYTQGSWE-GELGTDLVSIPKGPNV--TF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVK 132 (364)
T ss_pred EEEEECcceEE-EEEEEEEEEECCCCcc--ce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHh
Confidence 99999999874 9999999999863111 11 13455665544433 236799999999865 3556
Q ss_pred hhhhhccCceEEEeec---------C--CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 235 QMKTTIAGKFSYCLVQ---------Q--SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 235 ql~~i~~~~Fs~~l~~---------~--~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
| +.+ .++||++|.. . ..|+|+||| +.++.|+ +.|+|+.. ..+|.|.+++|+|+++.+....
T Consensus 133 q-~~~-~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~-l~~~p~~~---~~~~~v~l~~i~vg~~~~~~~~ 206 (364)
T cd05473 133 Q-TGI-PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGD-IWYTPIRE---EWYYEVIILKLEVGGQSLNLDC 206 (364)
T ss_pred c-cCC-ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCC-ceEEecCc---ceeEEEEEEEEEECCEeccccc
Confidence 6 334 5799998852 1 129999999 4567776 99999986 6799999999999999887532
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeC------cE
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRD------AD 368 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g------~~ 368 (427)
.......+||||||+++++|++++++|.+++.++....... .+..+|+..... ..+|+|+|+|+| .+
T Consensus 207 ~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~ 286 (364)
T cd05473 207 KEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFR 286 (364)
T ss_pred ccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEE
Confidence 21123479999999999999999999999999875422111 224579865321 258999999976 36
Q ss_pred EEecCCceEEEeC---CCeEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 369 VKLSTSNVFMNIS---EDLVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 369 ~~l~~~~y~~~~~---~~~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+.|+|++|+.... .+..|++ +.+..+.||||+.|||++|+|||++++|||||+++|..
T Consensus 287 l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~ 349 (364)
T cd05473 287 ITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAE 349 (364)
T ss_pred EEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccccc
Confidence 8999999988643 2467975 33334679999999999999999999999999999986
|
Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two |
| >cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=399.94 Aligned_cols=309 Identities=21% Similarity=0.364 Sum_probs=245.5
Q ss_pred eCCCCcE-EEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCC-----------CCCCC
Q 040562 97 IGTPPVE-ILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIK-----------DSCSA 163 (427)
Q Consensus 97 iGtP~q~-~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~-----------~~c~~ 163 (427)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|+. ... ..|.+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~----------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~ 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA----------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC----------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC
Confidence 5888777 999999999999997763 357899999999999986 321 13432
Q ss_pred CCCceeeee-eCCCCeEEEEEEEEEEEEcCCCCCc---eecCcEEEEeEeecCC-CCCCCCceEeecCCCCChhHHhhhh
Q 040562 164 EGNCRYSVS-YGDDSFSNGDLATETVTVGSTSGQA---VALPEIVFGCGTKNGG-KFNSKTDGIVGLGGGDASLISQMKT 238 (427)
Q Consensus 164 ~~~~~~~~~-Y~~g~~~~G~~~~D~v~ig~~~~~~---~~~~~~~fg~~~~~~~-~~~~~~~GilGLg~~~~sl~~ql~~ 238 (427)
+.|.|... |++|+...|++++|+|+|+..++.. ..++++.|||+.+... .+...+|||||||++++|+++||..
T Consensus 66 -~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~ 144 (362)
T cd05489 66 -NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLAS 144 (362)
T ss_pred -CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhh
Confidence 35878665 8899888899999999998654332 3688999999988643 2334589999999999999999865
Q ss_pred h--ccCceEEEeecCC--CceeeeCCCC--ccc-----CCCeeeeccccCCC-CccEEEEeeEEEecceEeeeeccC---
Q 040562 239 T--IAGKFSYCLVQQS--STKINFGTNG--IVS-----GSGVVSTPLLAKNP-KTFYSLTLDAISVGDQRLGVISGS--- 303 (427)
Q Consensus 239 i--~~~~Fs~~l~~~~--~G~l~fGg~~--~~~-----g~~~~~~p~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~--- 303 (427)
. .+++||+||.+.. .|+|+||+.+ .+. ...+.|+|++.++. ..+|.|+|++|+||++.+.+++..
T Consensus 145 ~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~ 224 (362)
T cd05489 145 AFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAN 224 (362)
T ss_pred hcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccc
Confidence 3 3589999998752 3999999932 222 13499999997642 579999999999999988764321
Q ss_pred --CCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc----CCCcceeccCC------CCccCeEEEEEeC--cEE
Q 040562 304 --NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE----GPYDLCYSISS------RPRFPEVTIHFRD--ADV 369 (427)
Q Consensus 304 --~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~----~~~~~C~~~~~------~~~~P~i~~~f~g--~~~ 369 (427)
.+..++||||||++++||+++|++|.+++.+++...... ...+.|+.... ...+|+|+|+|+| +++
T Consensus 225 ~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~ 304 (362)
T cd05489 225 DRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNW 304 (362)
T ss_pred cccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEE
Confidence 345789999999999999999999999999876532211 12357987421 2479999999986 999
Q ss_pred EecCCceEEEeCCCeEEEEEEeCC----CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 370 KLSTSNVFMNISEDLVCSVFNARD----DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 370 ~l~~~~y~~~~~~~~~C~~i~~~~----~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.|++++|+++..++..|++|.+.+ ..||||+.|||++|++||++++|||||+.
T Consensus 305 ~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 305 TIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999999987778999988654 46999999999999999999999999975
|
Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability |
| >cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=387.55 Aligned_cols=258 Identities=32% Similarity=0.589 Sum_probs=218.1
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCC-CCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCc
Q 040562 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQ-PCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNC 167 (427)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~-~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (427)
++|+++|.||||||++.|++||||+++||+|. +|. .| . |
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~--~c-------------------~-------------------c 40 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT--GC-------------------Q-------------------C 40 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC--CC-------------------c-------------------C
Confidence 57999999999999999999999999999984 676 55 1 8
Q ss_pred eeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC---CCCCceEeecCCCCChhHHhhhhh--ccC
Q 040562 168 RYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF---NSKTDGIVGLGGGDASLISQMKTT--IAG 242 (427)
Q Consensus 168 ~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GilGLg~~~~sl~~ql~~i--~~~ 242 (427)
.|++.|++|+.+.|.+++|+|+|+..++. ..++++.|||+....+.+ ....+||||||++..++++||... .++
T Consensus 41 ~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~ 119 (273)
T cd05475 41 DYEIEYADGGSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKN 119 (273)
T ss_pred ccEeEeCCCCceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCc
Confidence 99999998877789999999999753222 267899999998766532 357899999999999999998642 278
Q ss_pred ceEEEeecCCCceeeeCCCCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccH
Q 040562 243 KFSYCLVQQSSTKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPP 322 (427)
Q Consensus 243 ~Fs~~l~~~~~G~l~fGg~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~ 322 (427)
+||+||.+...|.|+||+..++.++ +.|+|+..++...+|.|++.+|+||++.+. .....+||||||+++++|+
T Consensus 120 ~Fs~~l~~~~~g~l~~G~~~~~~g~-i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~-----~~~~~~ivDTGTt~t~lp~ 193 (273)
T cd05475 120 VIGHCLSSNGGGFLFFGDDLVPSSG-VTWTPMRRESQKKHYSPGPASLLFNGQPTG-----GKGLEVVFDSGSSYTYFNA 193 (273)
T ss_pred eEEEEccCCCCeEEEECCCCCCCCC-eeecccccCCCCCeEEEeEeEEEECCEECc-----CCCceEEEECCCceEEcCC
Confidence 9999998754599999986566665 999999875445799999999999998543 2367899999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeC----cEEEecCCceEEEeCCCeEEEEEEeCC-----
Q 040562 323 AYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRD----ADVKLSTSNVFMNISEDLVCSVFNARD----- 393 (427)
Q Consensus 323 ~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g----~~~~l~~~~y~~~~~~~~~C~~i~~~~----- 393 (427)
++| +|+|+|+|++ ++++|++++|++...++..|+++....
T Consensus 194 ~~y-------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~ 242 (273)
T cd05475 194 QAY-------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLG 242 (273)
T ss_pred ccc-------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCC
Confidence 876 4899999987 699999999999876677899955321
Q ss_pred CcceechhhhcceEEEEeCCCCEEEEeeCCC
Q 040562 394 DIPLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424 (427)
Q Consensus 394 ~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c 424 (427)
+.||||+.|||++|++||++++|||||+++|
T Consensus 243 ~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 243 NTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 4799999999999999999999999999999
|
Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d |
| >cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=383.79 Aligned_cols=264 Identities=26% Similarity=0.432 Sum_probs=220.3
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCceee
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYS 170 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (427)
|+++|+||||+|++.|+|||||+++||+|..|. .|....++.|||++|+|++... .+.|.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--~~~~~~~~~y~~~~Sst~~~~~------------------~~~~~ 60 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--AAQQGGHKLYDPSKSSTAKLLP------------------GATWS 60 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--chhhccCCcCCCccCccceecC------------------CcEEE
Confidence 899999999999999999999999999999998 7766778889999999998753 17999
Q ss_pred eeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCChh---------HHhhhh-
Q 040562 171 VSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDASL---------ISQMKT- 238 (427)
Q Consensus 171 ~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~sl---------~~ql~~- 238 (427)
+.|++|+.+.|.+++|+|+|++. .++++.||+++...+ .+ ....+||||||++..+. ..+|..
T Consensus 61 i~Y~~G~~~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~ 135 (278)
T cd06097 61 ISYGDGSSASGIVYTDTVSIGGV-----EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSS 135 (278)
T ss_pred EEeCCCCeEEEEEEEEEEEECCE-----EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHh
Confidence 99999986679999999999987 899999999998776 33 56899999999976542 223221
Q ss_pred hccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCc
Q 040562 239 TIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316 (427)
Q Consensus 239 i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~ 316 (427)
..+++||+||.+...|+|+||| ++++.|+ +.|+|+... ..+|.|++++|+|+++.... .....++|||||+
T Consensus 136 ~~~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~-l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~----~~~~~~iiDSGTs 208 (278)
T cd06097 136 LDAPLFTADLRKAAPGFYTFGYIDESKYKGE-ISWTPVDNS--SGFWQFTSTSYTVGGDAPWS----RSGFSAIADTGTT 208 (278)
T ss_pred ccCceEEEEecCCCCcEEEEeccChHHcCCc-eEEEEccCC--CcEEEEEEeeEEECCcceee----cCCceEEeecCCc
Confidence 1268999999875459999999 4567776 999999863 57999999999999874433 3478899999999
Q ss_pred cccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEEEEeCCCcc
Q 040562 317 LTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIP 396 (427)
Q Consensus 317 ~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~i~~~~~~~ 396 (427)
++++|++++++|.+++.+.........+..+|.. .+|+|+|+| .|
T Consensus 209 ~~~lP~~~~~~l~~~l~g~~~~~~~~~~~~~C~~-----~~P~i~f~~------------------------------~~ 253 (278)
T cd06097 209 LILLPDAIVEAYYSQVPGAYYDSEYGGWVFPCDT-----TLPDLSFAV------------------------------FS 253 (278)
T ss_pred hhcCCHHHHHHHHHhCcCCcccCCCCEEEEECCC-----CCCCEEEEE------------------------------EE
Confidence 9999999999999998543222222245677884 379999999 69
Q ss_pred eechhhhcceEEEEeCCCCEEEEee
Q 040562 397 LYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 397 ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
|||++|||++|+|||++|+|||||+
T Consensus 254 ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 254 ILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred EEcchhhCceeEEEcCCCceeeecC
Confidence 9999999999999999999999996
|
The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active- |
| >cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-50 Score=373.26 Aligned_cols=251 Identities=47% Similarity=0.844 Sum_probs=215.8
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCcee
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRY 169 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (427)
+|+++|+||||+|++.|+|||||+++||+| |.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----------------------------------------------~~~ 33 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----------------------------------------------CSY 33 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----------------------------------------------Cce
Confidence 699999999999999999999999999954 257
Q ss_pred eeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhhhhccCceEEEee
Q 040562 170 SVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLV 249 (427)
Q Consensus 170 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~ 249 (427)
.+.|++|+...|.+++|+|.|++.+ ..++++.|||+....+......+||||||+...++++||.... ++||+||.
T Consensus 34 ~~~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~ 109 (265)
T cd05476 34 EYSYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLV 109 (265)
T ss_pred EeEeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-CeeEEEcc
Confidence 7899999888899999999999852 2578999999998876225678999999999999999987544 79999998
Q ss_pred cC----CCceeeeCC-CCcccCCCeeeeccccCC-CCccEEEEeeEEEecceEeeeecc-----CCCCCcEEEccCCccc
Q 040562 250 QQ----SSTKINFGT-NGIVSGSGVVSTPLLAKN-PKTFYSLTLDAISVGDQRLGVISG-----SNPGGDIVIDSGTTLT 318 (427)
Q Consensus 250 ~~----~~G~l~fGg-~~~~~g~~~~~~p~~~~~-~~~~w~v~l~~i~v~~~~~~~~~~-----~~~~~~~iiDSGt~~~ 318 (427)
+. ..|+|+||+ +..+.++ +.|+|++.++ ...+|.|++++|+|+++.+.++.. ......++|||||+++
T Consensus 110 ~~~~~~~~G~l~fGg~d~~~~~~-l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~ 188 (265)
T cd05476 110 PHDDTGGSSPLILGDAADLGGSG-VVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLT 188 (265)
T ss_pred CCCCCCCCCeEEECCcccccCCC-ceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcce
Confidence 74 129999999 4345555 9999999753 257999999999999998763211 1346889999999999
Q ss_pred cccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEe-CcEEEecCCceEEEeCCCeEEEEEEeC--CCc
Q 040562 319 YLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFR-DADVKLSTSNVFMNISEDLVCSVFNAR--DDI 395 (427)
Q Consensus 319 ~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~~~y~~~~~~~~~C~~i~~~--~~~ 395 (427)
++|++++ |+|+|+|+ |.++.+++++|+++..++..|+++... .+.
T Consensus 189 ~lp~~~~--------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~ 236 (265)
T cd05476 189 YLPDPAY--------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSSSGGV 236 (265)
T ss_pred EcCcccc--------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCCCCCc
Confidence 9999886 78999999 799999999999977667899997765 378
Q ss_pred ceechhhhcceEEEEeCCCCEEEEeeCCC
Q 040562 396 PLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424 (427)
Q Consensus 396 ~ilG~~fl~~~y~vfD~~~~riGfa~~~c 424 (427)
||||++|||++|++||++++|||||+++|
T Consensus 237 ~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 237 SILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 99999999999999999999999999999
|
This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which |
| >PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=383.35 Aligned_cols=292 Identities=27% Similarity=0.533 Sum_probs=247.1
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCC-CCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCce
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQC-YKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCR 168 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C-~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (427)
+|+++|+||||+|+++|++||||+++||++..|. .| .......|++++|+|++... +.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~--~~~~~~~~~~y~~~~S~t~~~~~-------------------~~ 59 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCN--SCSSCASSGFYNPSKSSTFSNQG-------------------KP 59 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTEC--SHTHHCTSC-BBGGGSTTEEEEE-------------------EE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccc--cccccccccccccccccccccce-------------------ee
Confidence 6999999999999999999999999999999988 44 33577899999999999876 78
Q ss_pred eeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCC-------ChhHHhh---
Q 040562 169 YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGD-------ASLISQM--- 236 (427)
Q Consensus 169 ~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~-------~sl~~ql--- 236 (427)
+.+.|++|+ ++|.+++|+|+|++. .+.++.||++....+. + ....+||||||++. .+++.+|
T Consensus 60 ~~~~y~~g~-~~G~~~~D~v~ig~~-----~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~ 133 (317)
T PF00026_consen 60 FSISYGDGS-VSGNLVSDTVSIGGL-----TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQ 133 (317)
T ss_dssp EEEEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHT
T ss_pred eeeeccCcc-cccccccceEeeeec-----cccccceeccccccccccccccccccccccCCcccccccCCcceecchhh
Confidence 999999999 669999999999997 8899999999996553 2 57889999999743 2344444
Q ss_pred hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEc
Q 040562 237 KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312 (427)
Q Consensus 237 ~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiD 312 (427)
+.|.+++||++|.+... |.|+||| .+++.|+ +.|+|+.. ..+|.|.+++|.+++..... .....++||
T Consensus 134 g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~-~~~~~~~~---~~~w~v~~~~i~i~~~~~~~----~~~~~~~~D 205 (317)
T PF00026_consen 134 GLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGD-LVWVPLVS---SGYWSVPLDSISIGGESVFS----SSGQQAILD 205 (317)
T ss_dssp TSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESE-EEEEEBSS---TTTTEEEEEEEEETTEEEEE----EEEEEEEEE
T ss_pred ccccccccceeeeecccccchheeeccccccccCc-eeccCccc---cccccccccccccccccccc----ccceeeecc
Confidence 56789999999999863 9999999 6677776 99999995 78999999999999983332 125679999
Q ss_pred cCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCC--eEEEE-E
Q 040562 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED--LVCSV-F 389 (427)
Q Consensus 313 SGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~--~~C~~-i 389 (427)
||++++++|++++++|++++.+.... ..+..+|.... .+|.|+|+|++.+++|++++|+.+.... ..|+. |
T Consensus 206 tgt~~i~lp~~~~~~i~~~l~~~~~~---~~~~~~c~~~~---~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i 279 (317)
T PF00026_consen 206 TGTSYIYLPRSIFDAIIKALGGSYSD---GVYSVPCNSTD---SLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGI 279 (317)
T ss_dssp TTBSSEEEEHHHHHHHHHHHTTEEEC---SEEEEETTGGG---GSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESE
T ss_pred cccccccccchhhHHHHhhhcccccc---eeEEEeccccc---ccceEEEeeCCEEEEecchHhcccccccccceeEeee
Confidence 99999999999999999999877655 24667798653 6899999999999999999999987653 48988 8
Q ss_pred Ee---C--CCcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 390 NA---R--DDIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 390 ~~---~--~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.+ . ...+|||.+|||++|++||++++|||||++
T Consensus 280 ~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 280 QPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 77 2 278999999999999999999999999985
|
; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E .... |
| >cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=367.91 Aligned_cols=267 Identities=25% Similarity=0.416 Sum_probs=225.4
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCcee
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRY 169 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (427)
.|+++|.||||+|++.|++||||+++||+ .|
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------------~~ 32 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------------DF 32 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-------------------------------------------------ee
Confidence 69999999999999999999999999994 24
Q ss_pred eeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCC-----------hhHHhhh-
Q 040562 170 SVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDA-----------SLISQMK- 237 (427)
Q Consensus 170 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~-----------sl~~ql~- 237 (427)
++.|++|+.+.|.+++|+|+|++. .++++.|||++.. ...+||||||++.. +++.||.
T Consensus 33 ~~~Y~~g~~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~-----~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~ 102 (295)
T cd05474 33 SISYGDGTSASGTWGTDTVSIGGA-----TVKNLQFAVANST-----SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKK 102 (295)
T ss_pred EEEeccCCcEEEEEEEEEEEECCe-----EecceEEEEEecC-----CCCcceeeECCCCCcccccCCCcCCCHHHHHHH
Confidence 678999777779999999999987 8899999999984 35789999999876 4667664
Q ss_pred --hhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCC---CccEEEEeeEEEecceEeeeeccCCCCCc
Q 040562 238 --TTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNP---KTFYSLTLDAISVGDQRLGVISGSNPGGD 308 (427)
Q Consensus 238 --~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 308 (427)
.+.+++||+||.+.. .|.|+||| .+++.++ +.|+|+...+. ..+|.|++++|+++++.+..+. ......
T Consensus 103 ~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~-~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~-~~~~~~ 180 (295)
T cd05474 103 QGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGD-LVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL-LSKNLP 180 (295)
T ss_pred CCcccceEEEEEeCCCCCCceeEEEeeeccceeece-eEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc-cCCCcc
Confidence 367899999999853 39999999 4567776 99999997542 2789999999999998764311 145789
Q ss_pred EEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC----CCe
Q 040562 309 IVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS----EDL 384 (427)
Q Consensus 309 ~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~----~~~ 384 (427)
++|||||++++||++++++|++++.+....... .+..+|+... . |+|+|+|+|.+++||+++|+++.. .+.
T Consensus 181 ~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~~~-~~~~~C~~~~---~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~ 255 (295)
T cd05474 181 ALLDSGTTLTYLPSDIVDAIAKQLGATYDSDEG-LYVVDCDAKD---D-GSLTFNFGGATISVPLSDLVLPASTDDGGDG 255 (295)
T ss_pred EEECCCCccEeCCHHHHHHHHHHhCCEEcCCCc-EEEEeCCCCC---C-CEEEEEECCeEEEEEHHHhEeccccCCCCCC
Confidence 999999999999999999999999876543322 4677899754 3 999999999999999999998864 256
Q ss_pred EEE-EEEeCC-CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 385 VCS-VFNARD-DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 385 ~C~-~i~~~~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.|+ +|++.+ +.||||++|||++|++||.+++|||||++
T Consensus 256 ~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 256 ACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 896 488876 78999999999999999999999999986
|
SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases |
| >cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=343.82 Aligned_cols=265 Identities=33% Similarity=0.669 Sum_probs=219.9
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCC--CCCCCCCcceeecCCCCCCCCCCCCCCCCCCCce
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPL--FDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCR 168 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~--y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (427)
|+++|.||||+|++.|++||||+++||+|..|. .|..+.... |++..|+++.... |.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~--~~~~~~~~~~~~~~~~s~~~~~~~-------------------~~ 59 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT--SCSCQKHPRFKYDSSKSSTYKDTG-------------------CT 59 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC--ccccccCCCCccCccCCceeecCC-------------------CE
Confidence 789999999999999999999999999999998 554344444 7888888776643 89
Q ss_pred eeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-CCCCceEeecCCCC------ChhHHhhhh---
Q 040562 169 YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGD------ASLISQMKT--- 238 (427)
Q Consensus 169 ~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~------~sl~~ql~~--- 238 (427)
+++.|++|+.. |.+++|+|+|++. .++++.|||+......+ ....+||||||+.. .+++.||..
T Consensus 60 ~~~~Y~~g~~~-g~~~~D~v~~~~~-----~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 60 FSITYGDGSVT-GGLGTDTVTIGGL-----TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred EEEEECCCeEE-EEEEEeEEEECCE-----EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 99999998776 9999999999997 79999999999988644 57899999999988 677777754
Q ss_pred hccCceEEEeecC----CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEc
Q 040562 239 TIAGKFSYCLVQQ----SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312 (427)
Q Consensus 239 i~~~~Fs~~l~~~----~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiD 312 (427)
|.+++||+||.+. ..|.|+||| ..++.++ +.|+|++.. ...+|.|.+++|.|++...... .....++||
T Consensus 134 i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~-~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~---~~~~~~iiD 208 (283)
T cd05471 134 ISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGD-LTYTPVVSN-GPGYWQVPLDGISVGGKSVISS---SGGGGAIVD 208 (283)
T ss_pred CCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCc-eEEEecCCC-CCCEEEEEeCeEEECCceeeec---CCCcEEEEe
Confidence 5789999999985 339999999 3345555 999999975 2679999999999998741111 457899999
Q ss_pred cCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEEEEeC
Q 040562 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNAR 392 (427)
Q Consensus 313 SGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~i~~~ 392 (427)
|||++++||++++++|++++.+....... .+...|... ..+|+|+|+|
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~---~~~p~i~f~f---------------------------- 256 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAVSSSDG-GYGVDCSPC---DTLPDITFTF---------------------------- 256 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcccccCC-cEEEeCccc---CcCCCEEEEE----------------------------
Confidence 99999999999999999999887654111 223334433 3789999999
Q ss_pred CCcceechhhhcceEEEEeCCCCEEEEee
Q 040562 393 DDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 393 ~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
.+|||++|||++|++||++++|||||+
T Consensus 257 --~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999986
|
Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu |
| >PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=225.68 Aligned_cols=158 Identities=49% Similarity=0.900 Sum_probs=128.5
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCC--CCCCCCCCc
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIK--DSCSAEGNC 167 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~--~~c~~~~~~ 167 (427)
|+++|.||||+|++.|++||||+++|++| ..+.|+|++|+||+.++|.+++|.. +.. ..|..++.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C-----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC-----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC-----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcc
Confidence 89999999999999999999999999977 4578999999999999999999986 432 234445779
Q ss_pred eeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhhhhccCceEEE
Q 040562 168 RYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYC 247 (427)
Q Consensus 168 ~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~ 247 (427)
.|.+.|++++.+.|.+++|+|+++...+....+.++.|||+....+.+ ...+||||||+.++||++||+....++||||
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyC 148 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF-YGADGILGLGRGPLSLPSQLASSSGNKFSYC 148 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS-TTEEEEEE-SSSTTSHHHHHHHH--SEEEEE
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC-cCCCcccccCCCcccHHHHHHHhcCCeEEEE
Confidence 999999999999999999999999875444578899999999998765 5899999999999999999987788999999
Q ss_pred eec-CCC--ceeeeCC
Q 040562 248 LVQ-QSS--TKINFGT 260 (427)
Q Consensus 248 l~~-~~~--G~l~fGg 260 (427)
|.+ ... |.|+||+
T Consensus 149 L~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 149 LPSSSPSSSGFLSFGD 164 (164)
T ss_dssp B-S-SSSSEEEEEECS
T ss_pred CCCCCCCCCEEEEeCc
Confidence 999 222 9999996
|
|
| >PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=187.91 Aligned_cols=140 Identities=36% Similarity=0.724 Sum_probs=114.6
Q ss_pred cEEEEeeEEEecceEeeeeccC----CCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCC----Cc--CCCcceecc
Q 040562 282 FYSLTLDAISVGDQRLGVISGS----NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQP----VE--GPYDLCYSI 351 (427)
Q Consensus 282 ~w~v~l~~i~v~~~~~~~~~~~----~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~----~~--~~~~~C~~~ 351 (427)
+|+|+|.+|+||++++.++... ++..+++|||||++++||+++|+++.+++.+++.... .. ..+..|++.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999999987653 3578999999999999999999999999999886542 11 567789988
Q ss_pred CC------CCccCeEEEEEe-CcEEEecCCceEEEeCCCeEEEEEEeC----CCcceechhhhcceEEEEeCCCCEEEEe
Q 040562 352 SS------RPRFPEVTIHFR-DADVKLSTSNVFMNISEDLVCSVFNAR----DDIPLYGNIMQTNFLIGYDIEGRTVSFK 420 (427)
Q Consensus 352 ~~------~~~~P~i~~~f~-g~~~~l~~~~y~~~~~~~~~C~~i~~~----~~~~ilG~~fl~~~y~vfD~~~~riGfa 420 (427)
.. ...+|+|+|+|. |++++|++++|++...++..|++|.++ ++..|||+.+|++++++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 65 247999999999 689999999999999888999998877 2789999999999999999999999999
Q ss_pred e
Q 040562 421 P 421 (427)
Q Consensus 421 ~ 421 (427)
|
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 7
|
|
| >cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-24 Score=171.90 Aligned_cols=106 Identities=39% Similarity=0.704 Sum_probs=93.8
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCC-CCCCCCcceeecCCCCCCCCCCCCCCCCCCCceeee
Q 040562 93 IRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLF-DPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSV 171 (427)
Q Consensus 93 ~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y-~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~ 171 (427)
++|.||||+|++.|+|||||+++||+|..|. .|..+.++.| +|+.|++++... |.|.+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--~~~~~~~~~~~~~~~sst~~~~~-------------------~~~~~ 59 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--SLAIYSHSSYDDPSASSTYSDNG-------------------CTFSI 59 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--CcccccccccCCcCCCCCCCCCC-------------------cEEEE
Confidence 4799999999999999999999999999998 5654566667 999999998765 89999
Q ss_pred eeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeec
Q 040562 172 SYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGL 225 (427)
Q Consensus 172 ~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGL 225 (427)
.|++|+.. |.++.|+|+|++. .++++.|||+....+.+ ....+|||||
T Consensus 60 ~Y~~g~~~-g~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 60 TYGTGSLS-GGLSTDTVSIGDI-----EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EeCCCeEE-EEEEEEEEEECCE-----EECCEEEEEEEecCCccccccccccccCC
Confidence 99999866 9999999999987 89999999999998753 4678999998
|
This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site |
| >cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.9e-06 Score=64.63 Aligned_cols=93 Identities=11% Similarity=0.159 Sum_probs=67.2
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCcee
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRY 169 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (427)
.|++++.|+ .+++++++|||++.+|+...... .+. . .+.+ ....
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~--~l~--~--~~~~----------------------------~~~~ 45 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE--RLG--L--PLTL----------------------------GGKV 45 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--HcC--C--CccC----------------------------CCcE
Confidence 589999999 79999999999999999664322 120 0 0000 0355
Q ss_pred eeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCC
Q 040562 170 SVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGG 227 (427)
Q Consensus 170 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 227 (427)
.+...+|.........+.+++|+. .++++.+........ ..+||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~ig~~-----~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQIGGI-----TLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEECCc-----EEeccEEEEeCCccc----CCceEeChHH
Confidence 677777876656777899999987 788888887765432 5789999863
|
This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A. |
| >TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0034 Score=51.02 Aligned_cols=95 Identities=12% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCC
Q 040562 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGN 166 (427)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~ 166 (427)
.++.|++++.|. .+++.+++|||++.+-+...--. .. ..++..- .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~--~L------gl~~~~~-------------------------~ 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ--RL------GLDLNRL-------------------------G 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--Hc------CCCcccC-------------------------C
Confidence 478899999998 68999999999999988543221 00 0111110 0
Q ss_pred ceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecC
Q 040562 167 CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLG 226 (427)
Q Consensus 167 ~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 226 (427)
....+.=+.|......+.-|.+++|+. .+.|+.+.++... ...+|+||+.
T Consensus 53 ~~~~~~ta~G~~~~~~~~l~~l~iG~~-----~~~nv~~~v~~~~-----~~~~~LLGm~ 102 (121)
T TIGR02281 53 YTVTVSTANGQIKAARVTLDRVAIGGI-----VVNDVDAMVAEGG-----ALSESLLGMS 102 (121)
T ss_pred ceEEEEeCCCcEEEEEEEeCEEEECCE-----EEeCcEEEEeCCC-----cCCceEcCHH
Confidence 233444455665546668899999997 8889998776432 1237999997
|
This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria). |
| >PF13650 Asp_protease_2: Aspartyl protease | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0093 Score=45.28 Aligned_cols=89 Identities=19% Similarity=0.251 Sum_probs=55.9
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCceeeee
Q 040562 93 IRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVS 172 (427)
Q Consensus 93 ~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~~ 172 (427)
+++.|+ .+++++++|||++.+.+...-+. .. ...+.... ....+.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~--~l------~~~~~~~~-------------------------~~~~~~ 45 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK--KL------GLKPRPKS-------------------------VPISVS 45 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH--Hc------CCCCcCCc-------------------------eeEEEE
Confidence 367787 68999999999998888554332 11 00111000 123334
Q ss_pred eCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecC
Q 040562 173 YGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLG 226 (427)
Q Consensus 173 Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 226 (427)
-.+|.........+.+++++. .+.++.|-+... ....+||||+-
T Consensus 46 ~~~g~~~~~~~~~~~i~ig~~-----~~~~~~~~v~~~-----~~~~~~iLG~d 89 (90)
T PF13650_consen 46 GAGGSVTVYRGRVDSITIGGI-----TLKNVPFLVVDL-----GDPIDGILGMD 89 (90)
T ss_pred eCCCCEEEEEEEEEEEEECCE-----EEEeEEEEEECC-----CCCCEEEeCCc
Confidence 445555546666778999986 777888777661 14678999974
|
|
| >cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.1 Score=42.61 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=57.1
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCc
Q 040562 88 VGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNC 167 (427)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (427)
...+++++.|+ ++++.+++|||++.+++...-+. .+.-. +... .
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~--~lgl~------~~~~--------------------------~ 57 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE--KCGLM------RLID--------------------------K 57 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH--HcCCc------cccC--------------------------c
Confidence 45689999999 78999999999999999654333 22100 0000 1
Q ss_pred eee-eeeC-CCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecC
Q 040562 168 RYS-VSYG-DDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLG 226 (427)
Q Consensus 168 ~~~-~~Y~-~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 226 (427)
.+. ...+ ++....|....+.+.+++. ..+ ..|.+... ...|+|||+-
T Consensus 58 ~~~~~~~g~g~~~~~g~~~~~~l~i~~~-----~~~-~~~~Vl~~------~~~d~ILG~d 106 (124)
T cd05479 58 RFQGIAKGVGTQKILGRIHLAQVKIGNL-----FLP-CSFTVLED------DDVDFLIGLD 106 (124)
T ss_pred ceEEEEecCCCcEEEeEEEEEEEEECCE-----Eee-eEEEEECC------CCcCEEecHH
Confidence 111 1222 2233447777888999986 543 56655532 3678999986
|
The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI. |
| >PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=49.39 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=59.2
Q ss_pred cEEEEEEeCCCC----cEE-EEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCC
Q 040562 90 EYLIRISIGTPP----VEI-LAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAE 164 (427)
Q Consensus 90 ~Y~~~i~iGtP~----q~~-~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~ 164 (427)
.-++.|+|=.|. |++ ++++||||.=+=|..+--. .......-+..+ .-..+. +|
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~-----~~l~~~Lp~~t~-~g~~la------------EC--- 81 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALP-----SSLAGSLPQQTG-GGAPLA------------EC--- 81 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhc-----hhhhccCCcccC-CCcchh------------hh---
Confidence 345666665543 555 7999999998776554221 000011111111 111111 22
Q ss_pred CCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeE----------eecCC--CC-CCCCceEeecCCC
Q 040562 165 GNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG----------TKNGG--KF-NSKTDGIVGLGGG 228 (427)
Q Consensus 165 ~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~----------~~~~~--~~-~~~~~GilGLg~~ 228 (427)
..|++|..| |-+.+-+|+|++.... .++=|.++-. ..-.. .- ....+||||+|.-
T Consensus 82 ------~~F~sgytW-GsVr~AdV~igge~A~--~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 ------AQFASGYTW-GSVRTADVTIGGETAS--SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred ------hhccCcccc-cceEEEEEEEcCeecc--ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 567888888 9999999999987222 3333333221 11110 11 4578999999974
|
This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG. |
| >cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.094 Score=42.77 Aligned_cols=93 Identities=15% Similarity=0.019 Sum_probs=51.7
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhhccC-CC-cCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeE
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQ-PV-EGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLV 385 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~-~~-~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~ 385 (427)
.+++|||++.+.++++..+++--......... .. ......+. .......++++|..+.+ ++
T Consensus 29 ~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~-----g~~~~~~l~i~~~~~~~---~~--------- 91 (124)
T cd05479 29 KAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGVGTQKIL-----GRIHLAQVKIGNLFLPC---SF--------- 91 (124)
T ss_pred EEEEeCCCceEEeCHHHHHHcCCccccCcceEEEEecCCCcEEE-----eEEEEEEEEECCEEeee---EE---------
Confidence 47999999999999999877521110000000 00 00000011 01233444444443221 11
Q ss_pred EEEEEeC-CCcceechhhhcceEEEEeCCCCEEEE
Q 040562 386 CSVFNAR-DDIPLYGNIMQTNFLIGYDIEGRTVSF 419 (427)
Q Consensus 386 C~~i~~~-~~~~ilG~~fl~~~y~vfD~~~~riGf 419 (427)
.+.+. +...|||..||+.+-.+.|+.+++|-|
T Consensus 92 --~Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 92 --TVLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred --EEECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 12222 256899999999999999999998853
|
The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI. |
| >PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.16 Score=42.08 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=55.9
Q ss_pred CCcEEEccCCccccccHHHHHHHHHHHHhhhccCCC--cCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCC
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPV--EGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED 383 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~--~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~ 383 (427)
...++||||++-.++..+...++--.+...-..-.. .+....|. ...+.+.+.++|.++.... ++.+.
T Consensus 32 ~~~vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~~V~~~g~~~~~~-----~~~~~~~~~i~g~~~~~dl--~vl~l--- 101 (135)
T PF08284_consen 32 PASVLIDSGATHSFISSSFAKKLGLPLEPLPRPIVVSAPGGSINCE-----GVCPDVPLSIQGHEFVVDL--LVLDL--- 101 (135)
T ss_pred EEEEEEecCCCcEEccHHHHHhcCCEEEEccCeeEEeccccccccc-----ceeeeEEEEECCeEEEeee--EEecc---
Confidence 345799999999999988766542111100000000 00011111 1234555555554442111 01111
Q ss_pred eEEEEEEeCCCcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 384 LVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 384 ~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.+-..|||..+|+.+..+-|+.+++|-|...
T Consensus 102 --------~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 102 --------GGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred --------cceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 1246899999999999999999999999753
|
These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases. |
| >cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.19 Score=38.43 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=25.9
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCC
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPC 122 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c 122 (427)
|++.+.|+ .+++.+++||||+..++..+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~ 30 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTW 30 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHH
Confidence 57899999 7999999999999999966543
|
Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif |
| >cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements | Back alignment and domain information |
|---|
Probab=89.71 E-value=2.1 Score=32.23 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.3
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeeeCCCCC
Q 040562 94 RISIGTPPVEILAVADTGSDLIWTQCQPCP 123 (427)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (427)
.+.|. ++++++++|||++.+-+......
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~ 29 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP 29 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh
Confidence 45666 68999999999999999665443
|
This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where |
| >PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.63 Score=33.79 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=29.9
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC
Q 040562 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP 123 (427)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (427)
..+.+++++.|| ++.+.+++|||++...|+..-+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 457899999999 69999999999999998766444
|
|
| >TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family | Back alignment and domain information |
|---|
Probab=88.04 E-value=3.3 Score=32.65 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.2
Q ss_pred CcceechhhhcceEEEEeCCCCEE
Q 040562 394 DIPLYGNIMQTNFLIGYDIEGRTV 417 (427)
Q Consensus 394 ~~~ilG~~fl~~~y~vfD~~~~ri 417 (427)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 578999999999999999988753
|
Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria. |
| >TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family | Back alignment and domain information |
|---|
Probab=86.16 E-value=1.5 Score=35.46 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=28.5
Q ss_pred CccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHH
Q 040562 280 KTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 280 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
.++|.++ ++|+|+.+ .++||||.+.+.+++++.+++
T Consensus 9 ~g~~~v~---~~InG~~~----------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV----------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE----------EEEEECCCCcEEcCHHHHHHc
Confidence 5667655 56788744 469999999999999998776
|
This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria). |
| >COG3577 Predicted aspartyl protease [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.88 E-value=4 Score=35.86 Aligned_cols=104 Identities=10% Similarity=0.156 Sum_probs=69.0
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
....+|-|.++..|- +|++..++|||-+.+-+..+... .-.|+.....
T Consensus 99 ak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~--------RlGid~~~l~---------------------- 146 (215)
T COG3577 99 AKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR--------RLGIDLNSLD---------------------- 146 (215)
T ss_pred EecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH--------HhCCCccccC----------------------
Confidence 345688999999998 89999999999999888554322 1123333211
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhh
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMK 237 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~ 237 (427)
.++.+.-.+|...-..+-.|.|.||+. .+.|+.=-++..- ....-+|||+ |+++|+
T Consensus 147 ---y~~~v~TANG~~~AA~V~Ld~v~IG~I-----~~~nV~A~V~~~g-----~L~~sLLGMS-----fL~rL~ 202 (215)
T COG3577 147 ---YTITVSTANGRARAAPVTLDRVQIGGI-----RVKNVDAMVAEDG-----ALDESLLGMS-----FLNRLS 202 (215)
T ss_pred ---CceEEEccCCccccceEEeeeEEEccE-----EEcCchhheecCC-----ccchhhhhHH-----HHhhcc
Confidence 455666678877757788999999987 7776654444322 1223456654 666654
|
|
| >PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=84.38 E-value=1.5 Score=33.86 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.1
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCCCC
Q 040562 92 LIRISIGTPPVEILAVADTGSDLIWTQCQPC 122 (427)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c 122 (427)
+.+|.|. .+++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5678888 6899999999999999976543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A .... |
| >PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=82.55 E-value=1.9 Score=37.91 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=53.0
Q ss_pred CCcEEEccCCccccccHHHH-HHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCe
Q 040562 306 GGDIVIDSGTTLTYLPPAYA-SKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDL 384 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~-~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~ 384 (427)
...++||||.+.-.....+. +.++...........+......=. ...+.+.+.++|..|.+|-- ++.
T Consensus 20 ~~~~~vDTGAt~C~~~~~iiP~e~we~~~~~i~v~~an~~~~~i~-----~~~~~~~i~I~~~~F~IP~i---Yq~---- 87 (201)
T PF02160_consen 20 NYHCYVDTGATICCASKKIIPEEYWEKSKKPIKVKGANGSIIQIN-----KKAKNGKIQIADKIFRIPTI---YQQ---- 87 (201)
T ss_pred EEEEEEeCCCceEEecCCcCCHHHHHhCCCcEEEEEecCCceEEE-----EEecCceEEEccEEEeccEE---EEe----
Confidence 34679999999877655444 222222221111111100000000 13566777777777766633 221
Q ss_pred EEEEEEeCCCcceechhhhcceEEEEeCCCCEEEEee
Q 040562 385 VCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 385 ~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
.++-..|||.+|+|.|+=...++ .+|-|-.
T Consensus 88 ------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 88 ------ESGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred ------cCCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 12467999999999887766665 4677754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 427 | ||||
| 2jxr_A | 329 | Structure Of Yeast Proteinase A Length = 329 | 9e-06 | ||
| 1dp5_A | 329 | The Structure Of Proteinase A Complexed With A Ia3 | 9e-06 | ||
| 1g0v_A | 329 | The Structure Of Proteinase A Complexed With A Ia3 | 1e-05 | ||
| 1htr_B | 329 | Crystal And Molecular Structures Of Human Progastri | 2e-05 | ||
| 4aa9_A | 320 | Camel Chymosin At 1.6a Resolution Length = 320 | 2e-05 | ||
| 1tzs_A | 351 | Crystal Structure Of An Activation Intermediate Of | 2e-05 | ||
| 3vlb_A | 413 | Crystal Structure Of Xeg-Edgp Length = 413 | 3e-05 | ||
| 3vla_A | 413 | Crystal Structure Of Edgp Length = 413 | 3e-05 | ||
| 1uh7_A | 325 | Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt | 4e-05 | ||
| 3cms_A | 323 | Engineering Enzyme Sub-Site Specificity: Preparatio | 5e-05 | ||
| 3apr_E | 325 | Binding Of A Reduced Peptide Inhibitor To The Aspar | 1e-04 | ||
| 1t6e_X | 381 | Crystal Structure Of The Triticum Aestivum Xylanase | 3e-04 | ||
| 1am5_A | 324 | The Crystal Structure And Proposed Amino Acid Seque | 3e-04 | ||
| 2qzx_A | 342 | Secreted Aspartic Proteinase (Sap) 5 From Candida A | 4e-04 | ||
| 1czi_E | 323 | Chymosin Complex With The Inhibitor Cp-113972 Lengt | 4e-04 | ||
| 5pep_A | 326 | X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim | 4e-04 | ||
| 1psa_A | 326 | Structure Of A Pepsin(Slash)renin Inhibitor Complex | 4e-04 | ||
| 1f34_A | 326 | Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou | 6e-04 | ||
| 3psg_A | 370 | The High Resolution Crystal Structure Of Porcine Pe | 6e-04 | ||
| 2psg_A | 370 | Refined Structure Of Porcine Pepsinogen At 1.8 Angs | 6e-04 | ||
| 1j71_A | 334 | Structure Of The Extracellular Aspartic Proteinase | 6e-04 | ||
| 3pep_A | 326 | Revised 2.3 Angstroms Structure Of Porcine Pepsin. | 6e-04 | ||
| 4pep_A | 326 | The Molecular And Crystal Structures Of Monoclinic | 8e-04 |
| >pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 | Back alignment and structure |
|
| >pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 | Back alignment and structure |
|
| >pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 | Back alignment and structure |
|
| >pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 | Back alignment and structure |
|
| >pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 | Back alignment and structure |
|
| >pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351 | Back alignment and structure |
|
| >pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 | Back alignment and structure |
|
| >pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 | Back alignment and structure |
|
| >pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 | Back alignment and structure |
|
| >pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323 | Back alignment and structure |
|
| >pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 | Back alignment and structure |
|
| >pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 | Back alignment and structure |
|
| >pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324 | Back alignment and structure |
|
| >pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans Length = 342 | Back alignment and structure |
|
| >pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323 | Back alignment and structure |
|
| >pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326 | Back alignment and structure |
|
| >pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326 | Back alignment and structure |
|
| >pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326 | Back alignment and structure |
|
| >pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370 | Back alignment and structure |
|
| >pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370 | Back alignment and structure |
|
| >pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From Candida Tropicalis Yeast Length = 334 | Back alignment and structure |
|
| >pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326 | Back alignment and structure |
|
| >pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 3e-81
Identities = 63/395 (15%), Positives = 131/395 (33%), Gaps = 46/395 (11%)
Query: 74 VSSSKVSQADIIP-----NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCY 128
V+ +K ++P + G + + TP +++ + D + +W C+
Sbjct: 1 VTPTKPINLVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ--YSSK 58
Query: 129 KQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETV 188
P + S C S A + C S + G+L + +
Sbjct: 59 TYQAPFCHSTQCSRANTHQCLSCPAAS--RPGCHKNTCGLMSTNPITQQTGLGELGEDVL 116
Query: 189 TVGSTSGQA------VALPEIVFGCGTKNGG--KFNSKTDGIVGLGGGDASLISQMKTT- 239
+ +T G V +P+ +F C T G+ GLG SL +Q+ +
Sbjct: 117 AIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHF 176
Query: 240 -IAGKFSYCLVQQSSTK--INFG--------TNGIVSGSGVVSTPLLAKNPKTFYSLTLD 288
+ +F+ CL + ++K I FG + TPL + Y++ ++
Sbjct: 177 GLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLT-ITLQGEYNVRVN 235
Query: 289 AISVGDQRLGVISGS------NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPV- 341
+I + + ++ + G +I + T L + V + + Q
Sbjct: 236 SIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQV 295
Query: 342 --EGPYDLCYSISSRPRFPEVTIHFR---DADVKLSTSNVFMNISEDLVCSVFNARDDIP 396
P+ LC++ + +P V + ++S ++ + + C P
Sbjct: 296 KSVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQP 355
Query: 397 ----LYGNIMQTNFLIGYDIEGRTVSFKPTDCSKQ 427
G L+ +D+ V F +
Sbjct: 356 RAEITLGARQLEENLVVFDLARSRVGFSTSSLHSH 390
|
| >1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 | Back alignment and structure |
|---|
Score = 230 bits (587), Expect = 5e-72
Identities = 64/381 (16%), Positives = 123/381 (32%), Gaps = 51/381 (13%)
Query: 86 PNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKY 145
P Y I G V D L+W+ C + ++ Y
Sbjct: 11 PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGG--QPPAEIPCSSPTCLLANAYPA 63
Query: 146 LSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSG---QAVALPE 202
C + C + Y + + + G L+ +T G +
Sbjct: 64 PGCPAPSCGS----DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVG 119
Query: 203 IVFGCGTKN-GGKFNSKTDGIVGLGGGDASLISQMKTT--IAGKFSYCLVQQSSTKINFG 259
++ C + G+ GL +L +Q+ + +A +F CL FG
Sbjct: 120 VLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFG 179
Query: 260 TNGIVSG---SGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
+ + TPL+ K + ++ +I VGD R+ V G+ G +++ +
Sbjct: 180 GGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLP 239
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPV-----------EGPYDLCYSISSR------PRFPE 359
L P L+ + +AAQ P+ +CY + P
Sbjct: 240 YVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPN 299
Query: 360 VTIHFRD-ADVKLSTSNVFMNISEDLVCSVF---------NARDDIPLYGNIMQTNFLIG 409
V + +D ++ N +++ + C F + R + G +F++
Sbjct: 300 VQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLD 359
Query: 410 YDIEGRTVSFKP----TDCSK 426
+D+E + + F T C
Sbjct: 360 FDMEKKRLGFSRLPHFTGCGG 380
|
| >3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 | Back alignment and structure |
|---|
Score = 228 bits (582), Expect = 7e-71
Identities = 76/405 (18%), Positives = 137/405 (33%), Gaps = 53/405 (13%)
Query: 72 SSVSSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQD 131
S S+ V + +Y+ I+ TP V V D G +W C
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYV--SSTYR 60
Query: 132 NPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVG 191
+ S ++C P C+ + + ++ + G++A + V+V
Sbjct: 61 PVRCRTSQCSLSGSIACGDCFNGPR--PGCNNNTCGVFPENPVINTATGGEVAEDVVSVE 118
Query: 192 STSGQA----VALPEIVFGCGTKN-GGKFNSKTDGIVGLGGGDASLISQMKTT--IAGKF 244
ST G + V +P +F C + S G+ GLG +L SQ + KF
Sbjct: 119 STDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKF 178
Query: 245 SYCLVQQSSTK---------INFGTNGIVSGSGVVSTPLL-----------AKNPKTFYS 284
+ CL +S+ F N IVS + TPLL P Y
Sbjct: 179 AMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYF 238
Query: 285 LTLDAISVGDQRLGV-----ISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQ 339
+ + +I + + + + S G I + T L + + AA+
Sbjct: 239 IGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAAR 298
Query: 340 PV-----EGPYDLCYSISS------RPRFPEVTIHFR--DADVKLSTSNVFMNISEDLVC 386
+ P+ C+S + P P + + + ++ SN + I++++VC
Sbjct: 299 NITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVC 358
Query: 387 SVFNARDDIP----LYGNIMQTNFLIGYDIEGRTVSFKPTDCSKQ 427
+ G + L+ +D+ V F T +
Sbjct: 359 LGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSR 403
|
| >1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 72/357 (20%), Positives = 131/357 (36%), Gaps = 76/357 (21%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPL-------FDPQRSST 142
Y I +G+ + V DTGS +W Y FDP SS+
Sbjct: 13 SYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSS 72
Query: 143 YKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPE 202
+ L N +S+ YGD + S G +TV G +++
Sbjct: 73 AQNL-------------------NQDFSIEYGDLTSSQGSFYKDTVGFGG-----ISIKN 108
Query: 203 IVFGCGTKNGGKFNSKTDGIVGLG------GGDA------SLISQMKTTIAGKFSYCLVQ 250
F T S GI+G+G G + +L Q +S L
Sbjct: 109 QQFADVTT-----TSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQ-GIINKNAYSLYLNS 162
Query: 251 QSST--KINFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304
+ ++ KI FG G+ +G+ + + P+ + L +I+ +S +
Sbjct: 163 EDASTGKIIFG--GVDNAKYTGT-LTALPVT---SSVELRVHLGSINFDGT---SVSTNA 213
Query: 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHF 364
V+DSGTT+TY + A K ++ A Y + S + +F
Sbjct: 214 DV---VLDSGTTITYFSQSTADKFA----RIVGATWDSRNE--IYRLPSCDLSGDAVFNF 264
Query: 365 RD-ADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNI-MQTNFLIGYDIEGRTVSF 419
+ + S + + S+ +C +R+D + G+ ++ +++ YD++ +T+S
Sbjct: 265 DQGVKITVPLSELILKDSDSSICYFGISRNDANILGDNFLRRAYIV-YDLDDKTISL 320
|
| >3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-24
Identities = 78/357 (21%), Positives = 130/357 (36%), Gaps = 73/357 (20%)
Query: 90 EYLIRISIGTPPVEILAVADTGS-DLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
EY+ +SIGTP + DTGS DL W P S ++ P +SST K +S
Sbjct: 16 EYITSVSIGTPAQVLPLDFDTGSSDL-WVFSSETPKSSATGH--AIYTPSKSSTSKKVSG 72
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS--GQAVALPEIVFG 206
+S +S+SYGD S S+GD+ T+ VT+G S Q
Sbjct: 73 AS------------------WSISYGDGSSSSGDVYTDKVTIGGFSVNTQG-------VE 107
Query: 207 CGTKNGGKF--NSKTDGIVGLGGGDASLISQMKTT--------IAGK-----FSYCLVQQ 251
T+ +F ++ G+VGL +Q++ A F+ L
Sbjct: 108 SATRVSTEFVQDTVISGLVGLA---FDSGNQVRPHPQKTWFSNAASSLAEPLFTADLRHG 164
Query: 252 SSTKINFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307
+ NFG I G V TP+ N + F+ T SVG +L +
Sbjct: 165 QNGSYNFG--YIDTSVAKGP-VAYTPV--DNSQGFWEFTASGYSVGGGKL-----NRNSI 214
Query: 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDA 367
D + D+GTTL L +++ +AQ P + +
Sbjct: 215 DGIADTGTTLLLLDDNVVDAY---YANVQSAQYDNQQEG--VVFDCDEDLPSFSFGVGSS 269
Query: 368 DVKLSTSNVFMNISED---LVCSVFNARDDIPL--YGNIMQTNFLIGYDIEGRTVSF 419
+ + + + E+ + I + +G++ L+ +D+ + +
Sbjct: 270 TITIPGDLLNLTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGW 326
|
| >3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 56/354 (15%), Positives = 102/354 (28%), Gaps = 66/354 (18%)
Query: 55 RNALNRSANRLRHFNKNSSVSSSKVSQADIIPNVG--EYLIRISIGTPPVEILAVADTGS 112
R + S V D + Y + +++G+PP + + DTGS
Sbjct: 38 APLGLRLPRETDEEPEEPGRRGSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGS 97
Query: 113 DLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVS 172
P + + Q SSTY+ L V
Sbjct: 98 SNFAVGAAPH----PFLH--RYYQRQLSSTYRDLRKG-------------------VYVP 132
Query: 173 YGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDA 230
Y + G+L T+ V++ T++ F S +GI+GL +
Sbjct: 133 YTQGKWE-GELGTDLVSIP---HGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEI 188
Query: 231 SLISQMKTT----------IAGKFSYCLVQQSSTKINFGTNGIVSG------------SG 268
+ + FS L V G +G
Sbjct: 189 ARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG 248
Query: 269 VVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASK 327
+ TP+ + +Y + + + + Q L + ++DSGTT LP
Sbjct: 249 SLWYTPI---RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 305
Query: 328 LL-----SVMSSMIAAQPVEGPYDLCYSISSRP--RFPEVTIHFRDADVKLSTS 374
+ + + G +C+ + P FP ++++ S
Sbjct: 306 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFR 359
|
| >3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 70/361 (19%), Positives = 123/361 (34%), Gaps = 79/361 (21%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIW---TQCQPCPPSQCYKQDNPLFDPQRSSTYKYL 146
Y ++S+G+ + + DTGS W + Q C F P SS+YK L
Sbjct: 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSS--GTFTPSSSSSYKNL 70
Query: 147 SCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFG 206
+ +++ YGD S S G +TVT+ S +
Sbjct: 71 GAA-------------------FTIRYGDGSTSQGTWGKDTVTINGVS-----ITGQQIA 106
Query: 207 CGTKNGGKFNSKTDGIVGLG---GGDASLISQMK-TTIAGKFSYCLVQQSSTK------- 255
T+ S GI+G+G S + T L +Q +
Sbjct: 107 DVTQT-----SVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLY 161
Query: 256 ----------INFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301
I FG G+ SG +V+ + +++L ++++ S
Sbjct: 162 LNSPSAETGTIIFG--GVDNAKYSGK-LVAEQV---TSSQALTISLASVNLKGS---SFS 212
Query: 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSI--SSRPRFPE 359
+ ++DSGTTLTY P +A++L A Y I ++
Sbjct: 213 FGDGA---LLDSGTTLTYFPSDFAAQLADKAG---ARLVQVARDQYLYFIDCNTDTSGTT 266
Query: 360 VTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYG-NIMQTNFLIGYDIEGRTVS 418
V A + + + + C D + G N ++ +L+ Y+++ T+S
Sbjct: 267 VFNFGNGAKITVPNTEYVYQNGDG-TCLWGIQPSDDTILGDNFLRHAYLL-YNLDANTIS 324
Query: 419 F 419
Sbjct: 325 I 325
|
| >1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 8e-23
Identities = 63/319 (19%), Positives = 109/319 (34%), Gaps = 59/319 (18%)
Query: 90 EYLIRISIGTPPVEILAVADTGS-DLIWTQCQPCPPSQ-CYKQDNPLFDPQRSSTYKYLS 147
EY I +SIGTP + + DTGS D W + C S+ C + FDP SST+K
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDT-WVPHKGCDNSEGCVGK--RFFDPSSSSTFKETD 75
Query: 148 CSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS--GQAVALPEIVF 205
+ +++YG + G +++TVG + Q +A + V
Sbjct: 76 YN-------------------LNITYGTGGAN-GIYFRDSITVGGATVKQQTLAYVDNVS 115
Query: 206 GCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTK---------- 255
G + DGI G D + + L +Q
Sbjct: 116 GPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNT 175
Query: 256 ------INFGTNGI----VSGSGVVSTPLLAKNPKTFY-SLTLDAISVGDQRLGVISGSN 304
+ FG G+ + G + T +L F+ + + + G+
Sbjct: 176 NDGGGQVVFG--GVNNTLLGGD-IQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQ 232
Query: 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRPRFPEVTIH 363
ID+GT P ++A K++ A + Y + C ++
Sbjct: 233 A---FTIDTGTNFFIAPSSFAEKVVKAAL--PDATESQQGYTVPCSKYQDSK--TTFSLV 285
Query: 364 FRDADVKLSTSNVFMNISE 382
+ + T +V + IS+
Sbjct: 286 LQKSGSSSDTIDVSVPISK 304
|
| >1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-22
Identities = 69/303 (22%), Positives = 107/303 (35%), Gaps = 59/303 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGS-DLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
Y+ + IGTP + DTGS DL W S+ + ++ P +S+T K LS
Sbjct: 16 AYITPVQIGTPAQTLNLDFDTGSSDL-WVFSSETTASEVXQ---TIYTPSKSTTAKLLSG 71
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS--GQAVALPEIVFG 206
++ +S+SYGD S S+GD+ T+TV+VG + GQAV + V
Sbjct: 72 AT------------------WSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSS 113
Query: 207 CGTKNGGKFNSKTDGIVGLG-----GGDASLISQMKTTIAGK-----FSYCLVQQSSTKI 256
DG++GL + F+ L +
Sbjct: 114 -SFTEDSTI----DGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTY 168
Query: 257 NFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312
NFG I +GS + T + + F+ T +VG + D + D
Sbjct: 169 NFG--FIDTTAYTGS-ITYTAV--STKQGFWEWTSTGYAVGSGTF-----KSTSIDGIAD 218
Query: 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLS 372
+GTTL YLP S + ++ Y P T A + +
Sbjct: 219 TGTTLLYLPATVVSAYW----AQVSGAKSSSSVGG-YVFPCSATLPSFTFGVGSARIVIP 273
Query: 373 TSN 375
Sbjct: 274 GDY 276
|
| >2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 5e-22
Identities = 52/317 (16%), Positives = 96/317 (30%), Gaps = 64/317 (20%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
Y + +++G+PP + + DTGS P + + Q SSTY+ L
Sbjct: 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH----PFLH--RYYQRQLSSTYRDLRKG 75
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
V Y + G+L T+ V++ T
Sbjct: 76 -------------------VYVPYTQGKWE-GELGTDLVSIP---HGPNVTVRANIAAIT 112
Query: 210 KNGGKF--NSKTDGIVGLGGGDASLISQMKTT----------IAGKFSYCLVQQSSTKIN 257
++ F S +GI+GL + + + FS L
Sbjct: 113 ESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ 172
Query: 258 FGTNGIVSG------------SGVVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304
V G +G + TP+ + +Y + + + + Q L +
Sbjct: 173 SEVLASVGGSMIIGGIDHSLYTGSLWYTPI---RREWYYEVIIVRVEINGQDLKMDCKEY 229
Query: 305 PGGDIVIDSGTTLTYLPPAYASKLL-----SVMSSMIAAQPVEGPYDLCYSISSRP--RF 357
++DSGTT LP + + + G +C+ + P F
Sbjct: 230 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIF 289
Query: 358 PEVTIHFRDADVKLSTS 374
P ++++ S
Sbjct: 290 PVISLYLMGEVTNQSFR 306
|
| >3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 5e-22
Identities = 58/300 (19%), Positives = 104/300 (34%), Gaps = 71/300 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPL-------FDPQRSST 142
Y I++G+ ++ + DTGS +W Y +DP SS
Sbjct: 13 TYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSA 72
Query: 143 YKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPE 202
+ L+ + + YGD S S G L +TV G S +
Sbjct: 73 SQDLNTP-------------------FKIGYGDGSSSQGTLYKDTVGFGGVS-----IKN 108
Query: 203 IVFGCGTKNGGKFNSKTDGIVGLG-------GGDASLISQMKTTIAGK-----FSYCLVQ 250
V S GI+G+G G ++ +K G +S L
Sbjct: 109 QVLADVDST-----SIDQGILGVGYKTNEAGGSYDNVPVTLKK--QGVIAKNAYSLYLNS 161
Query: 251 QSST--KINFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304
+ +I FG G+ SGS +++ P+ ++L ++ V + + +
Sbjct: 162 PDAATGQIIFG--GVDNAKYSGS-LIALPV---TSDRELRISLGSVEVSGKTI-----NT 210
Query: 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHF 364
D+++DSGTT+TYL A +++ + + + +V +F
Sbjct: 211 DNVDVLLDSGTTITYLQQDLADQII----KAFNGKLTQDSNGNSFYEVDCNLSGDVVFNF 266
|
| >2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 1e-21
Identities = 57/301 (18%), Positives = 105/301 (34%), Gaps = 71/301 (23%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPL-------FDPQRSS 141
Y I++G+ ++ + DTGS +W ++ D + P S
Sbjct: 12 ITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSR 71
Query: 142 TYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALP 201
T + L+ + + YGD S++ G L +TV +G S +
Sbjct: 72 TSQNLNTR-------------------FDIKYGDGSYAKGKLYKDTVGIGGVS-----VR 107
Query: 202 EIVFGCGTKNGGKFNSKTDGIVGLG------GGDA------SLISQMKTTIAGKFSYCLV 249
+ +F S GI+G+G SL +Q +S L
Sbjct: 108 DQLFANVWS-----TSARKGILGIGFQSGEATEFDYDNLPISLRNQ-GIIGKAAYSLYLN 161
Query: 250 QQSST--KINFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS 303
++ +I FG GI SGS +V P+ + ++ L +++V + + +
Sbjct: 162 SAEASTGQIIFG--GIDKAKYSGS-LVDLPI---TSEKKLTVGLRSVNVRGR---NVDAN 212
Query: 304 NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIH 363
++DSGTT++Y + +L I AQ ++ +
Sbjct: 213 TNV---LLDSGTTISYFTRSIVRNIL----YAIGAQMKFDSAGNKVYVADCKTSGTIDFQ 265
Query: 364 F 364
F
Sbjct: 266 F 266
|
| >2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 74/353 (20%), Positives = 132/353 (37%), Gaps = 67/353 (18%)
Query: 90 EYLIRISIGTPPVEILAVADTGS-DLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
EY +++IGTP + DTGS DL W C + +DP +SSTY+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDL-WIASTLCTNCGSGQT---KYDPNQSSTYQADGR 71
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
+ +S+SYGD S ++G LA + V +G + +
Sbjct: 72 T-------------------WSISYGDGSSASGILAKDNVNLGG-----LLIKGQTIELA 107
Query: 209 TKNGGKF-NSKTDGIVGLGGGDASLISQMKTTI----------AGKFSYCLVQQSSTK-- 255
+ F + DG++GLG + + +KT + F L + +
Sbjct: 108 KREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGG 167
Query: 256 -INFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIV 310
FG G GS + + P+ N + ++ +T+D +VG ++ S G +
Sbjct: 168 EYIFG--GYDSTKFKGS-LTTVPI--DNSRGWWGITVDRATVGTS---TVASSFDG---I 216
Query: 311 IDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVK 370
+D+GTTL LP A+ + A+ +G Y + S+ F + A +
Sbjct: 217 LDTGTTLLILPNNIAASVARAYG---ASDNGDGTYTISCDTSA---FKPLVFSINGASFQ 270
Query: 371 LSTSNVFMNISEDLVCSVFNARDDIPL--YGNIMQTNFLIGYDIEGRTVSFKP 421
+S ++ + C + G+ N + ++ V P
Sbjct: 271 VSPDSLVFEEFQG-QCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAP 322
|
| >2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 2e-21
Identities = 68/339 (20%), Positives = 111/339 (32%), Gaps = 59/339 (17%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
Y + + IGTPP ++ + DTGS P Y + FD +RSSTY+
Sbjct: 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPH----SYI--DTYFDTERSSTYRSKGFD 67
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS--GQAVALPEIVFGC 207
+V Y S++ G + + VT+ V + I
Sbjct: 68 -------------------VTVKYTQGSWT-GFVGEDLVTIPKGFNTSFLVNIATIFESE 107
Query: 208 GTKNGGKFNSKTDGIVGLGGGDASLISQMKTT----------IAGKFSYCLVQQSSTKIN 257
K +GI+GL + S T I FS +
Sbjct: 108 NF---FLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAG 164
Query: 258 FGTNG--IVSG-------SGVVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307
GTNG +V G G + TP+ + +Y + + + +G Q L +
Sbjct: 165 SGTNGGSLVLGGIEPSLYKGDIWYTPI---KEEWYYQIEILKLEIGGQSLNLDCREYNAD 221
Query: 308 DIVIDSGTTLTYLPPAYASKLL-----SVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTI 362
++DSGTTL LP ++ + + + G C++ S P I
Sbjct: 222 KAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKI 281
Query: 363 HFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNI 401
D S S + + + + A + Y
Sbjct: 282 SIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFG 320
|
| >1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 8e-21
Identities = 71/351 (20%), Positives = 126/351 (35%), Gaps = 68/351 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGS-DLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
EY+ ++IG + + DTGS DL W P SQ +++P +
Sbjct: 16 EYITPVTIGGTTLNL--NFDTGSADL-WVFSTELPASQQSGH--SVYNPSATGKEL---- 66
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
+S+SYGD S ++G++ T++VTVG V
Sbjct: 67 ----------------SGYTWSISYGDGSSASGNVFTDSVTVGG-----VTAHGQAVQAA 105
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTT-----IAGK-----FSYCLVQQSSTKI 256
+ +F ++ DG++GL + + T + F+ L Q
Sbjct: 106 QQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVY 165
Query: 257 NFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312
+FG I +GS + T + N + F+S +D+ + G Q S G + D
Sbjct: 166 DFG--FIDSSKYTGS-LTYTGV--DNSQGFWSFNVDSYTAGSQ-------SGDGFSGIAD 213
Query: 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLS 372
+GTTL L + S+ S + AQ Y P+ ++ +
Sbjct: 214 TGTTLLLLDDSVVSQY---YSQVSGAQQDSNAGG--YVFDCSTNLPDFSVSISGYTATVP 268
Query: 373 TSN-VFMNISEDLVC-SVFNARDDIPL--YGNIMQTNFLIGYDIEGRTVSF 419
S + + C + I +G+I + + +D +G + F
Sbjct: 269 GSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGF 319
|
| >2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 74/411 (18%), Positives = 132/411 (32%), Gaps = 91/411 (22%)
Query: 7 CAFILFFLCLSVLSPAEAQ-----------TVGFSVELIHRDSPKSPFYNPNETPYQRLR 55
+ +++ +V + + T+GF VE H K+ +L+
Sbjct: 51 MCGLFYYVYENVWLQRDNEMNEILKNSEHLTIGFKVENAHDRILKT-------IKTHKLK 103
Query: 56 NALNRSANRLRHFNKNSSVSSSKVSQADIIPNVG--EYLIRISIGTPPVEILAVADTGSD 113
N + S N L ++ S +++ + + +G + DTGS
Sbjct: 104 NYIKESVNFLNSGLTKTNYLGSSNDNIELV-DFQNIMFYGDAEVGDNQQPFTFILDTGSA 162
Query: 114 LIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSY 173
+W C + C + L+D +S TY+ ++Y
Sbjct: 163 NLWVPSVKCTTAGCLTK--HLYDSSKSRTYEKDGTK-------------------VEMNY 201
Query: 174 GDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF---NSKTDGIVGLGGGDA 230
+ S G + + VTVG+ ++LP NG + S DGI+GLG D
Sbjct: 202 VSGTVS-GFFSKDLVTVGN-----LSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDL 255
Query: 231 S----------LISQMKTTIAGKFSYCLVQQSST--KINFGTNGI----VSGSGVVSTPL 274
S L +Q F++ L + G GI G + L
Sbjct: 256 SIGSVDPIVVELKNQ-NKIENALFTFYLPVHDKHTGFLTIG--GIEERFYEGP-LTYEKL 311
Query: 275 LAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSS 334
N ++ +TLDA + ++DSGT+ +P + +K+L
Sbjct: 312 ---NHDLYWQITLDAHVGN--------IMLEKANCIVDSGTSAITVPTDFLNKML----Q 356
Query: 335 MIAAQPVEGP--YDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED 383
+ V Y + S P + L +I +
Sbjct: 357 NLDVIKVPFLPFYVTLCNNSK---LPTFEFTSENGKYTLEPEYYLQHIEDV 404
|
| >1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 69/337 (20%), Positives = 120/337 (35%), Gaps = 76/337 (22%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
+Y I++GTPP + DTGS +W C C+ +D + SS+YK
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLH--SKYDHEASSSYK----- 66
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPEI 203
+++ YG S G ++ +T+++G + +A + P +
Sbjct: 67 --------------ANGTEFAIQYGTGSLE-GYISQDTLSIGDLTIPKQDFAEATSEPGL 111
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDAS----------LISQMKTTIAGKFSYCLVQQSS 253
F K DGI+GLG S I Q +F++ L S
Sbjct: 112 TFA---------FGKFDGILGLGYDTISVDKVVPPFYNAIQQ-DLLDEKRFAFYLGDTSK 161
Query: 254 TKINFGTNGIVSG-------SGVVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305
N G G G ++ P+ K ++ + + I +GD+ +
Sbjct: 162 DTENGGE--ATFGGIDESKFKGDITWLPV---RRKAYWEVKFEGIGLGDEYAEL-----E 211
Query: 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPV-EGPYDL-CYSISSRPRFPEVTIH 363
ID+GT+L LP A + + I A+ G Y L C + + P++ +
Sbjct: 212 SHGAAIDTGTSLITLPSGLAEMIN----AEIGAKKGWTGQYTLDCNTRDN---LPDLIFN 264
Query: 364 FRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGN 400
F + + + + +S S D G
Sbjct: 265 FNGYNFTIGPYDYTLEVS-GSCISAITPMDFPEPVGP 300
|
| >3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 2e-20
Identities = 56/407 (13%), Positives = 122/407 (29%), Gaps = 76/407 (18%)
Query: 4 FLSCAFILFFLCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNAL--NRS 61
F+ A + + + + ++ + N + + ++ N
Sbjct: 46 FIVLAGGFSYYIFENFVFQKNRKINHIIKTSKYSTVGFNIENSYDRLMKTIKEHKLKNYI 105
Query: 62 ANRLRHFNKNSSVSSSKVSQADIIP--NVG--EYLIRISIGTPPVEILAVADTGSDLIWT 117
++ FNK + S S+ D + ++ +G + + T S +W
Sbjct: 106 KESVKLFNKGLTKKSYLGSEFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWV 165
Query: 118 QCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDS 177
C C + +D +S TY+ + + ++ +
Sbjct: 166 PSIKCTSESCESK--NHYDSSKSKTYE-------------------KDDTPVKLTSKAGT 204
Query: 178 FSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF---NSKTDGIVGLGGGDAS--- 231
S G + + VT+G +++P G + S DG+ GLG D S
Sbjct: 205 IS-GIFSKDLVTIGK-----LSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGS 258
Query: 232 -------LISQMKTTIAGKFSYCLVQQSST--KINFGTNGI----VSGSGVVSTPLLAKN 278
L +Q +S L ++ + G GI G + L N
Sbjct: 259 IDPYIVELKTQ-NKIEQAVYSIYLPPENKNKGYLTIG--GIEERFFDGP-LNYEKL---N 311
Query: 279 PKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAA 338
+ + LD + S+ ++++DS T++ +P + ++ + +
Sbjct: 312 HDLMWQVDLDVHFG--------NVSSKKANVILDSATSVITVPTEFFNQFV----ESASV 359
Query: 339 QPVEG--PYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED 383
V Y + P + + L +
Sbjct: 360 FKVPFLSLYVTTCGNTK---LPTLEYRSPNKVYTLEPKQYLEPLENI 403
|
| >1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 71/353 (20%), Positives = 124/353 (35%), Gaps = 72/353 (20%)
Query: 90 EYLIRISIGTPPVEILAVADTGS-DLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
EY+ ++++G + + DTGS DL W P S+ + P SS K
Sbjct: 16 EYITQVTVGDDTLGL--DFDTGSADL-WVFSSQTPSSERSGH--DYYTPG-SSAQKIDGA 69
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
+ +S+SYGD S ++GD+ + VTVG V+
Sbjct: 70 T-------------------WSISYGDGSSASGDVYKDKVTVGG-----VSYDSQAVESA 105
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTT--------IAGK-----FSYCLVQQSS 253
K +F ++ DG++GL S I+ ++ T + F+ L +
Sbjct: 106 EKVSSEFTQDTANDGLLGLA---FSSINTVQPTPQKTFFDNVKSSLSEPIFAVALKHNAP 162
Query: 254 TKINFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309
+FG +GS + T + N + F+ T D S+G S S G
Sbjct: 163 GVYDFG--YTDSSKYTGS-ITYTDV--DNSQGFWGFTADGYSIGSD---SSSDSITG--- 211
Query: 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADV 369
+ D+GTTL L + + A Y S P+ ++ D
Sbjct: 212 IADTGTTLLLLDDSIVDAY---YEQVNGASYDSSQGG--YVFPSSASLPDFSVTIGDYTA 266
Query: 370 KLSTSN-VFMNISEDLVCSVFNARDDIPL--YGNIMQTNFLIGYDIEGRTVSF 419
+ F ++ + I +G++ + + +D G + F
Sbjct: 267 TVPGEYISFADVGNGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGF 319
|
| >1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 2e-20
Identities = 72/307 (23%), Positives = 115/307 (37%), Gaps = 66/307 (21%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
EY ISIG+PP + DTGS +W C C F P +SSTY
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTH--SRFQPSQSSTYS----- 76
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
+ +S+ YG S S G + + V+V + + FG
Sbjct: 77 --------------QPGQSFSIQYGTGSLS-GIIGADQVSVEG-----LTVVGQQFGESV 116
Query: 210 KNGGKF--NSKTDGIVGLGGGDAS----------LISQMKTTIAGKFSYCLVQQSSTK-- 255
G+ +++ DGI+GLG + +++Q FS +
Sbjct: 117 TEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQ-NLVDLPMFSVYMSSNPEGGAG 175
Query: 256 --INFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309
+ FG G SGS + P+ + ++ + LD I VG + G
Sbjct: 176 SELIFG--GYDHSHFSGS-LNWVPV---TKQAYWQIALDNIQVGGTVMFCSEGCQ----A 225
Query: 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRPRFPEVTIHFRDAD 368
++D+GT+L P +L + I A PV+G Y + C +++ P+VT
Sbjct: 226 IVDTGTSLITGPSDKIKQLQ----NAIGAAPVDGEYAVECANLNV---MPDVTFTINGVP 278
Query: 369 VKLSTSN 375
LS +
Sbjct: 279 YTLSPTA 285
|
| >1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 77/337 (22%), Positives = 119/337 (35%), Gaps = 76/337 (22%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
Y ISIGTPP L + DTGS +W C C F+P SSTY
Sbjct: 13 AYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSH--SRFNPSESSTYS----- 65
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPEI 203
+S+ YG S + G +T+TV S G + P
Sbjct: 66 --------------TNGQTFSLQYGSGSLT-GFFGYDTLTVQSIQVPNQEFGLSENEPGT 110
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDAS----------LISQMKTTIAGKFSYCLVQQSS 253
F ++ DGI+GL S ++ + + FS L Q
Sbjct: 111 NFV---------YAQFDGIMGLAYPALSVDEATTAMQGMVQE-GALTSPVFSVYLSNQQG 160
Query: 254 TK---INFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306
+ + FG G+ +G + P+ + ++ + ++ +G Q G S G
Sbjct: 161 SSGGAVVFG--GVDSSLYTGQ-IYWAPV---TQELYWQIGIEEFLIGGQASGWCSE---G 211
Query: 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-GPYDL-CYSISSRPRFPEVTIHF 364
++D+GT+L +P Y S LL AQ E G + + C SI + P +T
Sbjct: 212 CQAIVDTGTSLLTVPQQYMSALL----QATGAQEDEYGQFLVNCNSIQN---LPSLTFII 264
Query: 365 RDADVKLSTSNVFMNISEDLVC-SVFNARDDIPLYGN 400
+ L S+ +S + C G
Sbjct: 265 NGVEFPLPPSS--YILSNNGYCTVGVEPTYLSSQNGQ 299
|
| >1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 4e-20
Identities = 64/311 (20%), Positives = 109/311 (35%), Gaps = 62/311 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGS-DLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
EYL +++G + + DTGS DL W P S+ L+ P S+T
Sbjct: 15 EYLTPVTVGKSTLHL--DFDTGSADL-WVFSDELPSSEQTGH--DLYTPSSSATKL---- 65
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
+ +SYGD S ++GD+ +TVTVG V +
Sbjct: 66 ----------------SGYSWDISYGDGSSASGDVYRDTVTVGG-----VTTNKQAVEAA 104
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTT-----IAGK-----FSYCLVQQSSTKI 256
+K +F ++ DG++GL + + T + + F+ L +
Sbjct: 105 SKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQLDSPLFAVQLKHDAPGVY 164
Query: 257 NFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312
+FG I +GS + T + + ++ + D S+GD S S+ G + D
Sbjct: 165 DFG--YIDDSKYTGS-ITYTDA--DSSQGYWGFSTDGYSIGDG-----SSSSSGFSAIAD 214
Query: 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLS 372
+GTTL L S ++ Y S P+ T+ D +
Sbjct: 215 TGTTLILLDDEIVSAYY----EQVSGAQESYEAGG-YVFSCSTDLPDFTVVIGDYKAVVP 269
Query: 373 TSNVFMNISED 383
+
Sbjct: 270 GKYINYAPVST 280
|
| >2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 5e-20
Identities = 65/352 (18%), Positives = 119/352 (33%), Gaps = 74/352 (21%)
Query: 54 LRNAL---NRSANRLRHFNKNSSVSSSKVSQADIIP--NVG--EYLIRISIGTPPVEILA 106
+R +L RL + + + N +Y I IGTPP
Sbjct: 19 IRESLKERGVDMARLGPEWSQPMKRLTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKV 78
Query: 107 VADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGN 166
V DTGS +W C + LFD SS+YK+
Sbjct: 79 VFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE----------------- 121
Query: 167 CRYSVSYGDDSFSNGDLATETVTVGSTS-----GQAVALPEIVFGCGTKNGGKFNSKTDG 221
++ Y + S G L+ + +TVG + G+ +P + F ++ DG
Sbjct: 122 --LTLRYSTGTVS-GFLSQDIITVGGITVTQMFGEVTEMPALPFM---------LAEFDG 169
Query: 222 IVGLGGGDAS----------LISQMKTTIAGKFSYCLVQQSSTKINFGTNGIVSG----- 266
+VG+G + + +ISQ FS+ + S + G ++ G
Sbjct: 170 VVGMGFIEQAIGRVTPIFDNIISQ-GVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQH 228
Query: 267 -SGVVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAY 324
G L + + + +SVG G ++D+G + +
Sbjct: 229 YEGNFHYINL---IKTGVWQIQMKGVSVGSS----TLLCEDGCLALVDTGASYISGSTSS 281
Query: 325 ASKLLSVMSSMIAAQPVEGPYDL-CYSISSRPRFPEVTIHFRDADVKLSTSN 375
KL+ + A+ Y + C + P+++ H + L++++
Sbjct: 282 IEKLM----EALGAKKRLFDYVVKCNEGPT---LPDISFHLGGKEYTLTSAD 326
|
| >1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 5e-20
Identities = 66/293 (22%), Positives = 106/293 (36%), Gaps = 63/293 (21%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
EY ISIGTPP + DTGS +W C C F P++SSTY +
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNH--NKFKPRQSSTYVETGKT 70
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
++YG G L +TV+VG + P G
Sbjct: 71 -------------------VDLTYGTGGMR-GILGQDTVSVGG-----GSDPNQELGESQ 105
Query: 210 KNGGKF--NSKTDGIVGLGGGDAS----------LISQMKTTIAGKFSYCLVQQSST--K 255
G F + DGI+GL + + SQ FS+ L + +
Sbjct: 106 TEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQ-SLVEKDLFSFYLSGGGANGSE 164
Query: 256 INFGTNGIVSG--SGVVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312
+ G G+ + +G + P+ + ++ + LD I+V Q G ++D
Sbjct: 165 VMLG--GVDNSHYTGSIHWIPV---TAEKYWQVALDGITVNGQTAAC-----EGCQAIVD 214
Query: 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRPRFPEVTIHF 364
+GT+ P + + ++ I A +G C S+ S P++T
Sbjct: 215 TGTSKIVAPVSALANIM----KDIGASENQGEMMGNCASVQS---LPDITFTI 260
|
| >3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 6e-20
Identities = 61/309 (19%), Positives = 110/309 (35%), Gaps = 67/309 (21%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
+Y I IGTPP V DTGS +W C + LFD SS+YK+
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE 78
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS-----GQAVALPEIV 204
++ Y + S G L+ + +TVG + G+ +P +
Sbjct: 79 -------------------LTLRYSTGTVS-GFLSQDIITVGGITVTQMFGEVTEMPALP 118
Query: 205 FGCGTKNGGKFNSKTDGIVGLGGGDAS----------LISQMKTTIAGKFSYCLVQQSST 254
F ++ DG+VG+G + + +ISQ FS+ + S
Sbjct: 119 FM---------LAEFDGVVGMGFIEQAIGRVTPIFDNIISQ-GVLKEDVFSFYYNRDSEN 168
Query: 255 KINFGTNGIVSG------SGVVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307
+ G ++ G G L + + + +SVG L G
Sbjct: 169 SQSLGGQIVLGGSDPQHYEGNFHYINL---IKTGVWQIQMKGVSVGSSTL----LCEDGC 221
Query: 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRPRFPEVTIHFRD 366
++D+G + + KL+ + A+ Y + C + P+++ H
Sbjct: 222 LALVDTGASYISGSTSSIEKLM----EALGAKKRLFDYVVKCNEGPT---LPDISFHLGG 274
Query: 367 ADVKLSTSN 375
+ L++++
Sbjct: 275 KEYTLTSAD 283
|
| >3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 9e-19
Identities = 75/366 (20%), Positives = 127/366 (34%), Gaps = 63/366 (17%)
Query: 53 RLRNALNRSANRLRHFNKNSSVSSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGS 112
+L++ L + + + + + + I IGTP + + DTGS
Sbjct: 21 KLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYF-GTIGIGTPAQDFTVIFDTGS 79
Query: 113 DLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVS 172
+W C C F+P SST++ S S++
Sbjct: 80 SNLWVPSVYCSSLACSDH--NQFNPDDSSTFEATSQE-------------------LSIT 118
Query: 173 YGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDA 230
YG S + G L +TV VG ++ +FG G F + DGI+GL
Sbjct: 119 YGTGSMT-GILGYDTVQVGG-----ISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSI 172
Query: 231 S----------LISQMKTTIAGKFSYCLVQQSST--KINFG-TNGIVSGSGVVSTPLLAK 277
S L Q FS L + + G + + P+
Sbjct: 173 SASGATPVFDNLWDQ-GLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPV--- 228
Query: 278 NPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIA 337
+ + ++ +TLD+I++ + + G ++D+GT+L P + + + S I
Sbjct: 229 SVEGYWQITLDSITMDGETIACSGGCQ----AIVDTGTSLLTGPTSAIANIQ----SDIG 280
Query: 338 AQPV-EGPYDL-CYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVC-SVFNARDD 394
A +G + C SI S P++ LS S + +D C S F D
Sbjct: 281 ASENSDGEMVISCSSIDS---LPDIVFTIDGVQYPLSPSA--YILQDDDSCTSGFEGMDV 335
Query: 395 IPLYGN 400
G
Sbjct: 336 PTSSGE 341
|
| >1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 65/306 (21%), Positives = 104/306 (33%), Gaps = 68/306 (22%)
Query: 54 LRNAL--NRSANRLRHFNKNSSVSSSKVSQADIIP--NVG--EYLIRISIGTPPVEILAV 107
RN+ + + + + DI+ N +Y I +GTPP + +
Sbjct: 11 DRNSRVATGLSGGEEQPLLSGANPLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVI 70
Query: 108 ADTGSDLIW---TQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAE 164
DTGS +W +C CY + SSTYK
Sbjct: 71 FDTGSSNLWVPSAKCYFSIA--CYLH--SRYKAGASSTYKKNGKP--------------- 111
Query: 165 GNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPEIVFGCGTKNGGKFNSK 218
++ YG S + G + ++VTVG +A P I F +K
Sbjct: 112 ----AAIQYGTGSIA-GYFSEDSVTVGDLVVKDQEFIEATKEPGITF---------LVAK 157
Query: 219 TDGIVGLG------GGDASLISQMKTTIAGK---FSYCLVQQSSTK----INFG-TNGIV 264
DGI+GLG G + +M FS+ L + I FG +
Sbjct: 158 FDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKH 217
Query: 265 SGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAY 324
P+ K ++ + + VG + G +G G + DSGT+L P A
Sbjct: 218 YVGEHTYVPV---TQKGYWQFDMGDVLVGGKSTGFCAG---GCAAIADSGTSLLAGPTAI 271
Query: 325 ASKLLS 330
+++
Sbjct: 272 ITEINE 277
|
| >3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 65/333 (19%), Positives = 118/333 (35%), Gaps = 75/333 (22%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
+Y +I +GTPP E + DTGS W C + C FDP++SST++ L
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNH--QRFDPRKSSTFQNLGKP 72
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPEI 203
S+ YG S G L +TVTV + G + P
Sbjct: 73 -------------------LSIHYGTGSMQ-GILGYDTVTVSNIVDIQQTVGLSTQEPGD 112
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDAS----------LISQMKTTIAGKFSYCLVQQSS 253
F ++ DGI+G+ + ++++ FS + +
Sbjct: 113 FFT---------YAEFDGILGMAYPSLASEYSIPVFDNMMNR-HLVAQDLFSVYMDRNGQ 162
Query: 254 T-KINFGTNGI----VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGD 308
+ G I +GS + P+ + ++ T+D++++ + G
Sbjct: 163 ESMLTLG--AIDPSYYTGS-LHWVPV---TVQQYWQFTVDSVTISGVVVACEGGCQ---- 212
Query: 309 IVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-GPYDL-CYSISSRPRFPEVTIHFRD 366
++D+GT+ P + + I A + G +D+ C ++S P V
Sbjct: 213 AILDTGTSKLVGPSSDILNIQ----QAIGATQNQYGEFDIDCDNLSY---MPTVVFEING 265
Query: 367 ADVKLSTSNVFMNISEDLVC-SVFNARDDIPLY 398
L+ S + C S F + + +
Sbjct: 266 KMYPLTPSA--YTSQDQGFCTSGFQSENHSQKW 296
|
| >1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 5e-18
Identities = 60/356 (16%), Positives = 111/356 (31%), Gaps = 74/356 (20%)
Query: 53 RLRNALNRSANRLRHFNKNSSVSSSKVSQADIIP--NVG--EYLIRISIGTPPVEILAVA 108
+N N F + S+ D+I +V + +G + + +
Sbjct: 22 SKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIF 81
Query: 109 DTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCR 168
DTGS +W + C S C + L+D +S +Y+
Sbjct: 82 DTGSANLWVPSKKCNSSGCSIK--NLYDSSKSKSYEKDGTK------------------- 120
Query: 169 YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF---NSKTDGIVGL 225
++YG + G + + VT+G +++P + + + + DGI+GL
Sbjct: 121 VDITYGSGTVK-GFFSKDLVTLGH-----LSMPYKFIEVTDTDDLEPIYSSVEFDGILGL 174
Query: 226 GGGDAS----------LISQMKTTIAGKFSYCLVQQSST--KINFGTNGI----VSGSGV 269
G D S L +Q F++ L + G GI G+ +
Sbjct: 175 GWKDLSIGSIDPIVVELKNQ-NKIDNALFTFYLPVHDVHAGYLTIG--GIEEKFYEGN-I 230
Query: 270 VSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLL 329
L N ++ + LD + ++++DSGTT P + +K
Sbjct: 231 TYEKL---NHDLYWQIDLDVH--------FGKQTMEKANVIVDSGTTTITAPSEFLNKFF 279
Query: 330 SVMSSMIAAQPVEGP--YDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED 383
+ + V Y P + + L I E
Sbjct: 280 ----ANLNVIKVPFLPFYVTTCDNKE---MPTLEFKSANNTYTLEPEYYMNPILEV 328
|
| >1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-17
Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 60/261 (22%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQ-CYKQDNPLFDPQRSSTYKYLSC 148
Y I IGTPP + + DTGS ++W C S+ C +++ SSTYK
Sbjct: 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH--SMYESSDSSTYKENGT 71
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPE 202
++ YG S + G + ++VT+G +A +
Sbjct: 72 F-------------------GAIIYGTGSIT-GFFSQDSVTIGDLVVKEQDFIEATDEAD 111
Query: 203 IVFGCGTKNGGKFNSKTDGIVGLGGGDAS------LISQMKTTIAGKFSYCLVQQSSTK- 255
VF + DGI+GL S +++Q +FS+ L + +
Sbjct: 112 NVFL---------HRLFDGILGLSFQTISVPVWYNMLNQ-GLVKERRFSFWLNRNVDEEE 161
Query: 256 ---INFGTNGIVSG--SGVVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309
+ FG G+ G + P+ + ++ + + +GD+ G + G
Sbjct: 162 GGELVFG--GLDPNHFRGDHTYVPV---TYQYYWQFGIGDVLIGDKSTGFCAP---GCQA 213
Query: 310 VIDSGTTLTYLPPAYASKLLS 330
DSGT+L P A +++
Sbjct: 214 FADSGTSLLSGPTAIVTQINH 234
|
| >1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 6e-17
Identities = 51/353 (14%), Positives = 98/353 (27%), Gaps = 68/353 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
+Y IG V D+ S + Q C C + ++ +
Sbjct: 18 QYAGITKIGNQNFLT--VFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISD---- 71
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
+ S G +++T+ + +
Sbjct: 72 ----------------GNVQVKFFDTGSAV-GRGIEDSLTISQ-----LTTSQQDIVLAD 109
Query: 210 KNGGKF-NSKTDGIVGLG-------GGDASLISQMKTT--IAGKFSYCLVQQSSTK---- 255
+ + D +VG+ +++ IA FS + +
Sbjct: 110 ELSQEVCILSADVVVGIAAPGCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGE 169
Query: 256 INFGTNGIVSG--SGVVS-TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312
I FG G G + PL + LD + +GD + + G +ID
Sbjct: 170 IIFG--GSDWKYVDGEFTYVPL---VGDDSWKFRLDGVKIGDTTV-----APAGTQAIID 219
Query: 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSI--SSRPRFPEVTIHFRDADVK 370
+ + P AY + + I + + S P P+VT +
Sbjct: 220 TSKAIIVGPKAYVNPIN----EAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFN 275
Query: 371 LSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGY----DIEGRTVSF 419
+S+ +L S F + + F+ Y + E +T+ F
Sbjct: 276 ISSQYYIQQNG-NLCYSGFQPCGHSDHF--FIGDFFVDHYYSEFNWENKTMGF 325
|
| >1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 56/300 (18%), Positives = 100/300 (33%), Gaps = 77/300 (25%)
Query: 90 EYLIRISIGTPPVEILAVADTGS-DLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
+Y++ + +G+P + DTGS + W + Y + +ST S
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNT-W-----LGADKSYVK---------TSTSSATSD 57
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
SV+YG SFS G T+TVT+GS + +P+ G
Sbjct: 58 K-------------------VSVTYGSGSFS-GTEYTDTVTLGS-----LTIPKQSIGVA 92
Query: 209 TKNGGKFNSKTDGIVGLGGGDASL--ISQMKTTIAGKFSYCLVQQS-------STKINFG 259
+++ G DGI+G+G D ++ +S +T + L Q +
Sbjct: 93 SRDSG--FDGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPT 150
Query: 260 TNGIVSGS-----GVVS---------TPLLAKNP-KTFYSLTLDAISVGDQRLGVISGSN 304
T+ + S TP+ + +P ++ + I S
Sbjct: 151 TSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSST---SILSST 207
Query: 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHF 364
G ++D+GTTLT + +K A L + + +
Sbjct: 208 AG---IVDTGTTLTLIASDAFAKYKKA----TGAVADNNTGLLRLTTAQYANLQSLFFTI 260
|
| >1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-10
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
+Y I IGTPP V DTGS +W C + ++ +SSTY S
Sbjct: 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTS 73
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVG 191
+ + YG S S G L+ +TV+V
Sbjct: 74 -------------------FDIHYGSGSLS-GYLSQDTVSVP 95
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 6e-05
Identities = 53/411 (12%), Positives = 110/411 (26%), Gaps = 122/411 (29%)
Query: 31 VELIHRDSPKSPFYN-PNETPYQRLRNALN--RSANRLR-H----FNKNSSVSSSKVSQA 82
+ ++ D+ YN PY +LR AL R A + K + V+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSY 174
Query: 83 DIIPNVGEYLIRISIG--TPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQR- 139
+ + + +++ P +L +++ P+ + D+ R
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 140 SSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVA 199
S L + P ++ V + V
Sbjct: 228 HSIQAEL--RRLLKSKPYENC--------LLVL--LN---------------------VQ 254
Query: 200 LPEIV----FGC----GTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQ 251
+ C T+ TD + SL T L
Sbjct: 255 NAKAWNAFNLSCKILLTTRF----KQVTDFLSAATTTHISLDHHSMT---------LTPD 301
Query: 252 SSTKINFGTNGIVSGSGVVSTPLLAK--NPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309
+ L K + + L + ++ +RL +I +
Sbjct: 302 EVKSL------------------LLKYLDCRPQ-DLPREVLTTNPRRLSII------AES 336
Query: 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADV 369
+ D T KL +++ S + P + R F +++ F
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEY------RKMFDRLSV-FPP-SA 385
Query: 370 KLSTSNVFMNISEDLVCSVFNA--RDDIPLYGNIMQTNFLIGYDIEGRTVS 418
+I L+ ++ + D+ + N + L+ + T+S
Sbjct: 386 ---------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
|
| >1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 280 KTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQ 339
K ++ + LD + V G + ++D+GT+L P +L ++ A
Sbjct: 98 KAYWQVHLDQVEVASGLTLCKEGC----EAIVDTGTSLMVGPVDEVREL---QKAIGAVP 150
Query: 340 PVEGPYDL-CYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED 383
++G Y + C +S+ P +T+ KLS + + +S+
Sbjct: 151 LIQGEYMIPCEKVST---LPAITLKLGGKGYKLSPEDYTLKVSQA 192
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| 3psg_A | 370 | Pepsinogen; hydrolase(acid proteinase zymogen); 1. | 100.0 | |
| 2x0b_A | 383 | Renin; hydrolase-hormone complex, hydrolase hormon | 100.0 | |
| 1tzs_A | 351 | Cathepsin E; hydrolase, aspartic protease, activat | 100.0 | |
| 3cms_A | 323 | Chymosin B; hydrolase, acid proteinase; 2.00A {Bos | 100.0 | |
| 3vla_A | 413 | EDGP; extracellular, inhibitor, plant protein; HET | 100.0 | |
| 2apr_A | 325 | Rhizopuspepsin; hydrolase (aspartic proteinase); 1 | 100.0 | |
| 3c9x_A | 329 | Trichoderma reesei aspartic protease; aspartic pro | 100.0 | |
| 4aa9_A | 320 | Chymosin; hydrolase, aspartic peptidase, rennet; H | 100.0 | |
| 1oew_A | 329 | Endothiapepsin; hydrolase, aspartic proteinase mec | 100.0 | |
| 1mpp_A | 361 | Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu | 100.0 | |
| 1am5_A | 324 | Pepsin, acid proteinase; aspartyl protease, hydrol | 100.0 | |
| 1j71_A | 334 | Candidapepsin, aspartic proteinase; candida tropic | 100.0 | |
| 1dpj_A | 329 | Proteinase A; proteinase A, hydrolase-hydrolase in | 100.0 | |
| 2qzx_A | 342 | Candidapepsin-5; aspartic proteinase, aspartyl pro | 100.0 | |
| 3fv3_A | 339 | SAPP1P-secreted aspartic protease 1; secreted aspa | 100.0 | |
| 1htr_B | 329 | Gastricsin; aspartyl protease; 1.62A {Homo sapiens | 100.0 | |
| 3k1w_A | 341 | Renin; protease, alternative splicing, aspartyl pr | 100.0 | |
| 1miq_A | 375 | Plasmepsin; aspartic proteinase zymogen, domain op | 100.0 | |
| 3pvk_A | 342 | Candidapepsin-2; hydrolase; 1.27A {Candida albican | 100.0 | |
| 2bju_A | 453 | Plasmepsin II; aspartic proteinase, drug design, m | 100.0 | |
| 1qdm_A | 478 | Prophytepsin; aspartic proteinases, saposin-like d | 100.0 | |
| 3aup_A | 403 | SBG7S, BG, basic 7S globulin; pepsin-like fold, pl | 100.0 | |
| 3qvc_A | 451 | Histo-aspartic protease; HAP, plasmepsin, zymogen, | 100.0 | |
| 1yg9_A | 330 | Aspartic protease BLA G 2; allegren, hydrolase, al | 100.0 | |
| 1ibq_A | 325 | Aspergillopepsin; aspartic proteinase, hydrolase; | 100.0 | |
| 1izd_A | 323 | Aspartic proteinase; sugar binding, acid protease, | 100.0 | |
| 1bxo_A | 323 | Protein (penicillopepsin); hydrolase, phosphonate | 100.0 | |
| 2ewy_A | 383 | Beta-secretase 2; BACE2, aspartic protease, hydrol | 100.0 | |
| 2qp8_A | 395 | Beta-secretase 1; BACE1, protease, alternative spl | 100.0 | |
| 3lpj_A | 455 | Beta-secretase 1; alzheimer'S, aspartyl protease, | 100.0 | |
| 3vf3_A | 402 | Beta-secretase 1; structure-based drug design, hyd | 100.0 | |
| 1t6e_X | 381 | Xylanase inhibitor; two beta-barrel domain structu | 100.0 | |
| 1wkr_A | 340 | Polyporopepsin; hydrolase, hydrolase-hydrolase inh | 100.0 | |
| 1b5f_A | 239 | Protein (cardosin A); hydrolase, aspartic proteina | 100.0 | |
| 1lya_B | 241 | Cathepsin D; lysosomal aspartic protease; HET: NAG | 100.0 | |
| 1lya_A | 97 | Cathepsin D; lysosomal aspartic protease; HET: NAG | 99.9 | |
| 1b5f_B | 87 | Protein (cardosin A); hydrolase, aspartic proteina | 99.73 | |
| 2i1a_A | 148 | DNA damage-inducible protein DDI1; acid protease f | 93.61 | |
| 2i1a_A | 148 | DNA damage-inducible protein DDI1; acid protease f | 93.07 | |
| 3s8i_A | 148 | Protein DDI1 homolog 1; protease, structural genom | 92.01 | |
| 2hs1_A | 99 | HIV-1 protease; ultra-high resolution active site | 87.31 | |
| 1fmb_A | 104 | EIAV protease; hydrolase (acid proteinase), RNA-di | 87.07 | |
| 3ec0_A | 99 | Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 | 84.45 | |
| 3liy_A | 116 | Protease; hydrolase, hydrolase-hydrolase inhibitor | 82.37 | |
| 2hah_A | 116 | Protease, retropepsin; retroviral, aspartyl, hydro | 80.03 |
| >3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-62 Score=474.71 Aligned_cols=300 Identities=25% Similarity=0.416 Sum_probs=256.8
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.++.++.+.+|+++|+||||||+|.|+|||||+++||+|..|....| ..++.|||++|+||+...
T Consensus 48 ~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C--~~~~~y~~~~SsT~~~~~------------- 112 (370)
T 3psg_A 48 EPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNPDDSSTFEATS------------- 112 (370)
T ss_dssp CTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGG--TTSCCBCGGGCTTCEEEE-------------
T ss_pred ecceeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCccc--CCCCCCCCccCcCcEECC-------------
Confidence 45556789999999999999999999999999999999999984456 688999999999999986
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh-------
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ...++||||||++.++
T Consensus 113 ------~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~ 180 (370)
T 3psg_A 113 ------QELSITYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPV 180 (370)
T ss_dssp ------EEEEEESSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCH
T ss_pred ------cEEEEEeCCceE-EEEEEEEEEeeCCc-----ccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCH
Confidence 899999999985 59999999999987 999999999998876 34 5678999999998764
Q ss_pred ---hHHhhhhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 232 ---LISQMKTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 232 ---l~~ql~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. .
T Consensus 181 ~~~l~~q-g~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~----~ 251 (370)
T 3psg_A 181 FDNLWDQ-GLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGS-LNWVPVSV---EGYWQITLDSITMDGETIAC----S 251 (370)
T ss_dssp HHHHHHT-TCSSSSEEEEEEC-----CEEEEETCCCGGGBSSC-CEEEECSE---ETTEEEEECEEESSSSEEEC----T
T ss_pred HHHHHHC-CCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCc-ceeecccc---cceeEEEEeEEEECCEEEec----C
Confidence 3344 5678999999999863 39999999 5567777 99999987 68999999999999987764 3
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCe
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDL 384 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~ 384 (427)
.+..+||||||+++++|++++++|.+++.+... ....+.++|+... .+|+|+|+|+|.+++|++++|+++ .+ .
T Consensus 252 ~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~--~~g~~~v~C~~~~---~lP~i~f~~~g~~~~l~~~~yi~~-~~-~ 324 (370)
T 3psg_A 252 GGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN--SDGEMVISCSSID---SLPDIVFTIDGVQYPLSPSAYILQ-DD-D 324 (370)
T ss_dssp TCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC--TTCCEECCGGGGG---GCCCEEEEETTEEEEECHHHHEEE-CS-S
T ss_pred CCceEEEcCCCCcEECCHHHHHHHHHHhCCccc--CCCcEEEECCCcc---cCCcEEEEECCEEEEECHHHhccc-CC-C
Confidence 478999999999999999999999999876532 1114677898653 789999999999999999999998 33 4
Q ss_pred EEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 385 VCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 385 ~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
.|++ |++.+ ..||||++|||++|+|||++++|||||+++
T Consensus 325 ~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 325 SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 6997 77632 359999999999999999999999999975
|
| >2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=473.63 Aligned_cols=300 Identities=22% Similarity=0.364 Sum_probs=257.1
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
.++.++.+.+|+++|+||||||+|.|+|||||+++||+|..|.. ..| ..++.|||++|+||+...
T Consensus 53 ~~l~n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C--~~~~~y~~~~SsT~~~~~----------- 119 (383)
T 2x0b_A 53 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC--VYHKLFDASDSSSYKHNG----------- 119 (383)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHH--HTSCCBCGGGCTTCEEEE-----------
T ss_pred EeeeecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccc--cCCCCCCCCCCCcEEECC-----------
Confidence 44455689999999999999999999999999999999999962 368 467899999999999976
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh-----
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS----- 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++ +.|||+....+ .| ...+|||||||++.++
T Consensus 120 --------~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~ 184 (383)
T 2x0b_A 120 --------TELTLRYSTGTV-SGFLSQDIITVGGI-----TVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVT 184 (383)
T ss_dssp --------EEEEEECSSCEE-EEEEEEEEEEETTE-----EEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCC
T ss_pred --------cEEEEEcCCccE-EEEEEeeEEEEcCc-----eEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCC
Confidence 899999999985 59999999999986 888 99999999866 34 5688999999998765
Q ss_pred -----hHHhhhhhccCceEEEeecCC------CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 232 -----LISQMKTTIAGKFSYCLVQQS------STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 232 -----l~~ql~~i~~~~Fs~~l~~~~------~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. .++|.|.|++|+|+++.+.
T Consensus 185 ~~~~~l~~q-g~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~-l~~~pv~~---~~~w~v~l~~i~v~~~~~~ 259 (383)
T 2x0b_A 185 PIFDNIISQ-GVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN-FHYINLIK---TGVWQIQMKGVSVGSSTLL 259 (383)
T ss_dssp CHHHHHHTT-TCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEE-EEEEEBSS---TTSCEEEECEEEESSCCCB
T ss_pred cHHHHHHhC-CCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCc-eEEEEcCC---CceEEEEEeEEEeCCceEE
Confidence 3445 6678899999998862 49999999 4567776 99999986 6899999999999998753
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEE
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFM 378 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~ 378 (427)
. ..+..+||||||+++++|++++++|.+++.+.. ....+.++|+... .+|+|+|+|+|.+|+|++++|++
T Consensus 260 ~----~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~---~~g~~~v~C~~~~---~~P~i~f~~~g~~~~l~~~~yi~ 329 (383)
T 2x0b_A 260 C----EDGCLALVDTGASYISGSTSSIEKLMEALGAKK---RLFDYVVKCNEGP---TLPDISFHLGGKEYTLTSADYVF 329 (383)
T ss_dssp S----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE---CSSCEEEEGGGTT---TCCCEEEEETTEEEEECHHHHBC
T ss_pred c----CCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc---cCCcEEEeccccc---cCceEEEEECCEEEEECHHHhEe
Confidence 2 347899999999999999999999999997654 2224567899754 68999999999999999999998
Q ss_pred EeCC--CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 379 NISE--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 379 ~~~~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+..+ +..|++ |++. ++.||||++|||++|+|||++|+|||||+++
T Consensus 330 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 330 QESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp CCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred eccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 8653 458996 8754 2689999999999999999999999999974
|
| >1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-59 Score=457.15 Aligned_cols=302 Identities=25% Similarity=0.408 Sum_probs=255.5
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
.+..+.+|+++|.||||+|++.|+|||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 18 ~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~---------------- 79 (351)
T 1tzs_A 18 INYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPAC--KTHSRFQPSQSSTYSQPG---------------- 79 (351)
T ss_dssp GGGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGG--TTSCCBCGGGCTTCBCCS----------------
T ss_pred eecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccc--CCCCcCCcccCcceEECC----------------
Confidence 34578899999999999999999999999999999999985578 568999999999999865
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCCCh------hHHh
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGDAS------LISQ 235 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s------l~~q 235 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+. | ....+||||||++.++ ++.+
T Consensus 80 ---~~~~i~Yg~Gs~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 150 (351)
T 1tzs_A 80 ---QSFSIQYGTGSL-SGIIGADQVSVEGL-----TVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDN 150 (351)
T ss_dssp ---CEEEEESSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHH
T ss_pred ---CEEEEEeCCCCe-EEEEEEeEEEECCe-----EECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHHH
Confidence 899999999985 59999999999986 8999999999987663 4 5678999999998765 3333
Q ss_pred h---hhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 236 M---KTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 236 l---~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. .++|.|.|++|+|+++.+.. ..+
T Consensus 151 l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~----~~~ 222 (351)
T 1tzs_A 151 MMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGS-LNWVPVTK---QAYWQIALDNIQVGGTVMFC----SEG 222 (351)
T ss_dssp HHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSC-CEEEECSE---ETTEEEEEEEEEETTEEEEC----TTC
T ss_pred HHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCc-eEEEecCC---CceEEEEeCEEEECCceEEc----CCC
Confidence 3 5578899999998863 39999999 4567776 99999986 67999999999999987643 346
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--Ce
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DL 384 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~ 384 (427)
..+||||||+++++|++++++|.+++.+.... ..+..+|+... .+|+|+|+|+|.+++|++++|+++..+ +.
T Consensus 223 ~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~---g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~ 296 (351)
T 1tzs_A 223 CQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD---GEYAVECANLN---VMPDVTFTINGVPYTLSPTAYTLLDFVDGMQ 296 (351)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCEECS---SSEEECGGGGG---GSCCEEEEETTEEEEECTTTSEECC-----C
T ss_pred ceEEeccCCcceeCCHHHHHHHHHHhCCcccC---CeEEEeCCCCc---cCCcEEEEECCEEEEECHHHhEeeccCCCCC
Confidence 88999999999999999999999999765432 24566899653 689999999999999999999987642 35
Q ss_pred EEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 385 VCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 385 ~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
.|++ |++. ++.||||++|||++|+|||++++|||||+++|.+
T Consensus 297 ~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~s 345 (351)
T 1tzs_A 297 FCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPWS 345 (351)
T ss_dssp CEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC---
T ss_pred eEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCccc
Confidence 7997 8764 2689999999999999999999999999999865
|
| >3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-60 Score=453.16 Aligned_cols=301 Identities=21% Similarity=0.365 Sum_probs=256.5
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.++.+..+.+|+++|.||||+|++.|+|||||+++||+|.+|....| ..++.|||++|+|++...
T Consensus 6 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~------------- 70 (323)
T 3cms_A 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC--KNHQRFDPRKSSTFQNLG------------- 70 (323)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHH--HTSCCBCGGGCTTCEEEE-------------
T ss_pred eeeEeccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccc--cCCCCCCCccCCCeEECC-------------
Confidence 34556678999999999999999999999999999999999954478 467899999999999986
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------h
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------L 232 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l 232 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+ .| ....+||||||++.++ +
T Consensus 71 ------~~~~i~Yg~Gs~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~ 138 (323)
T 3cms_A 71 ------KPLSIHYGTGSM-QGILGYDTVTVSNI-----VDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPV 138 (323)
T ss_dssp ------EEEEEEETTEEE-EEEEEEEEEEETTE-----EEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCH
T ss_pred ------cEEEEEeCCCCe-EEEEEEEEEEECCe-----EEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCH
Confidence 899999999985 59999999999986 899999999998766 34 4578999999998654 3
Q ss_pred HHhh---hhhccCceEEEeecCCC-ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 233 ISQM---KTTIAGKFSYCLVQQSS-TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 233 ~~ql---~~i~~~~Fs~~l~~~~~-G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
+.+| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. ..+
T Consensus 139 ~~~l~~q~~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~----~~~ 210 (323)
T 3cms_A 139 FDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGS-LHWVPVTV---QQYWQFTVDSVTISGVVVAC----EGG 210 (323)
T ss_dssp HHHHHHTTCSSSSEEEEECCTTSSCEEEEESCCCGGGEEEE-EEEEECSS---BTTBEEEEEEEEETTEEEES----TTC
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCEEEEECCCChhhccCc-eEEEECcc---CCeEEEEEeeEEECCEEeec----CCC
Confidence 3333 55778999999998733 9999999 4567776 99999986 67999999999999988764 346
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEE
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVC 386 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C 386 (427)
..+||||||+++++|++++++|.+++.+.... ...+..+|+... .+|+|+|+|+|.+++|++++|+++ ++..|
T Consensus 211 ~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~--~g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~--~~~~C 283 (323)
T 3cms_A 211 CQAILDTGTSKLVGPSSDILNIQQAIGATQNQ--YGEFDIDCDNLS---YMPTVVFEINGKMYPLTPSAYTSQ--DQGFC 283 (323)
T ss_dssp EEEEECTTCCSEEECHHHHHHHHHHHTCEEET--TTEEEECTTCTT---TSCCEEEEETTEEEEECHHHHEEE--ETTEE
T ss_pred cEEEEecCCccEeCCHHHHHHHHHHhCCeecC--CCcEEEECCCCc---cCceEEEEECCEEEEECHHHhccC--CCCEE
Confidence 78999999999999999999999998754321 114566798653 689999999999999999999998 34589
Q ss_pred EE-EEeC--CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 387 SV-FNAR--DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 387 ~~-i~~~--~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 284 ~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 284 TSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp EESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 97 8875 3789999999999999999999999999975
|
| >3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=464.06 Aligned_cols=323 Identities=24% Similarity=0.396 Sum_probs=262.8
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCC--C--
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIK--D-- 159 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~--~-- 159 (427)
+..+++|+++|.||||||+|.|+|||||+++||+|.+| .+|+||+.++|.++.|.. +.. .
T Consensus 16 d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c---------------~~Sst~~~v~C~s~~C~~~~~~~~~~c 80 (413)
T 3vla_A 16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN---------------YVSSTYRPVRCRTSQCSLSGSIACGDC 80 (413)
T ss_dssp CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS---------------CCCTTCEECBTTSHHHHHTTCCEEECC
T ss_pred cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC---------------CCCCCcCccCCCcccccccccCCCccc
Confidence 34688999999999999999999999999999998854 378999999999999976 321 1
Q ss_pred ------CCCCCCCceeeeee-CCCCeEEEEEEEEEEEEcCCCCC----ceecCcEEEEeEeecCC-CCCCCCceEeecCC
Q 040562 160 ------SCSAEGNCRYSVSY-GDDSFSNGDLATETVTVGSTSGQ----AVALPEIVFGCGTKNGG-KFNSKTDGIVGLGG 227 (427)
Q Consensus 160 ------~c~~~~~~~~~~~Y-~~g~~~~G~~~~D~v~ig~~~~~----~~~~~~~~fg~~~~~~~-~~~~~~~GilGLg~ 227 (427)
.|. .+.|.|.+.| ++|+.+.|++++|+|+|+..++. .+.++++.|||+..... .+...++||||||+
T Consensus 81 ~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dGIlGLg~ 159 (413)
T 3vla_A 81 FNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGR 159 (413)
T ss_dssp SSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCEEEECSS
T ss_pred ccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcccccccccccCC
Confidence 233 3569999999 48777779999999999854332 35889999999998632 12367899999999
Q ss_pred CCChhHHhhhhh--ccCceEEEeecCC--CceeeeCCCCc-------ccCCCeeeeccccCCC-----------CccEEE
Q 040562 228 GDASLISQMKTT--IAGKFSYCLVQQS--STKINFGTNGI-------VSGSGVVSTPLLAKNP-----------KTFYSL 285 (427)
Q Consensus 228 ~~~sl~~ql~~i--~~~~Fs~~l~~~~--~G~l~fGg~~~-------~~g~~~~~~p~~~~~~-----------~~~w~v 285 (427)
+.+++.+||... .+++||+||.+.. .|+|+||+.+. +.|+.+.|+|++.++. ..+|.|
T Consensus 160 ~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V 239 (413)
T 3vla_A 160 TRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFI 239 (413)
T ss_dssp SSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEE
T ss_pred CCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEE
Confidence 999999998753 2699999999842 29999999322 4454499999998642 279999
Q ss_pred EeeEEEecceEeeeeccC-----CCCCcEEEccCCccccccHHHHHHHHHHHHhhhc---cCCCc--CCCcceeccCCC-
Q 040562 286 TLDAISVGDQRLGVISGS-----NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIA---AQPVE--GPYDLCYSISSR- 354 (427)
Q Consensus 286 ~l~~i~v~~~~~~~~~~~-----~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~---~~~~~--~~~~~C~~~~~~- 354 (427)
+|++|+||++.+..+... .+++++||||||++++||+++|++|.++|.+++. ..... ..++.|+.....
T Consensus 240 ~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 319 (413)
T 3vla_A 240 GVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNIL 319 (413)
T ss_dssp CCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEEECTTCC
T ss_pred EEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCcceeccCCcc
Confidence 999999999998875322 1457899999999999999999999999998764 12111 456789987532
Q ss_pred -----CccCeEEEEEeC--cEEEecCCceEEEeCCCeEEEEEEeCC----CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 355 -----PRFPEVTIHFRD--ADVKLSTSNVFMNISEDLVCSVFNARD----DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 355 -----~~~P~i~~~f~g--~~~~l~~~~y~~~~~~~~~C~~i~~~~----~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
..+|+|+|+|+| ++|+|++++|+++..++..|++|+..+ ..||||+.|||++|+|||++++|||||++.
T Consensus 320 ~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~ 399 (413)
T 3vla_A 320 STRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTL 399 (413)
T ss_dssp EETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETTTTEEEEEEEG
T ss_pred ccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECCCCEEEEEEec
Confidence 268999999998 899999999999877778999976543 579999999999999999999999999863
|
| >2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=444.67 Aligned_cols=302 Identities=22% Similarity=0.349 Sum_probs=256.8
Q ss_pred cccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 79 VSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
.+.......+.+|+++|+||||+|++.|+|||||+++||+|.+|. .| .+.++.|||++|+|++...
T Consensus 5 ~v~~~~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~--~c-~~~~~~y~~~~SsT~~~~~----------- 70 (325)
T 2apr_A 5 TVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT--NC-GSGQTKYDPNQSSTYQADG----------- 70 (325)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCS--SC-CTTSCCBCGGGCTTCEEEE-----------
T ss_pred ceeeeecCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCc--hH-hcCCCCCCcccCCCeeeCC-----------
Confidence 445566788999999999999999999999999999999999998 67 5788999999999999865
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-CCCCceEeecCCCCCh------
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s------ 231 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+....+.| ....+||||||++.++
T Consensus 71 --------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~ 137 (325)
T 2apr_A 71 --------RTWSISYGDGSSASGILAKDNVNLGGL-----LIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVK 137 (325)
T ss_dssp --------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCC
T ss_pred --------CEEEEEECCCCCEEEEEEEEEEEECCE-----EECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCC
Confidence 899999999997779999999999986 89999999999877655 4558999999997653
Q ss_pred -hHHhh---hhhccCceEEEeecC---CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeecc
Q 040562 232 -LISQM---KTTIAGKFSYCLVQQ---SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISG 302 (427)
Q Consensus 232 -l~~ql---~~i~~~~Fs~~l~~~---~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 302 (427)
+++|| +.+.+++||+||.+. ..|+|+||| ++++.|+ +.|+|+... .++|.|.+++|+|++ .+.
T Consensus 138 ~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~~~v~l~~i~vg~-~~~---- 209 (325)
T 2apr_A 138 TPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGS-LTTVPIDNS--RGWWGITVDRATVGT-STV---- 209 (325)
T ss_dssp CHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSC-CEEEECBCT--TSSCEEEECEEEETT-EEE----
T ss_pred CHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCc-eEEEEccCC--CCEEEEEEeEEEECC-Eec----
Confidence 44444 446789999999653 239999999 4577776 999999753 679999999999999 332
Q ss_pred CCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC
Q 040562 303 SNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE 382 (427)
Q Consensus 303 ~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~ 382 (427)
.....+||||||++++||+++|+++++++.+.+... ..+..+|+. ..+|+|+|+|+|.+++||+++|+++..
T Consensus 210 -~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~--g~~~~~C~~----~~~p~i~f~f~g~~~~ip~~~~~~~~~- 281 (325)
T 2apr_A 210 -ASSFDGILDTGTTLLILPNNIAASVARAYGASDNGD--GTYTISCDT----SAFKPLVFSINGASFQVSPDSLVFEEF- 281 (325)
T ss_dssp -ECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSS--SCEEECSCG----GGCCCEEEEETTEEEEECGGGGEEEEE-
T ss_pred -CCCceEEEecCCccEECCHHHHHHHHHHHhcccCCC--CeEEEECCC----CCCCcEEEEECCEEEEECHHHEEEcCC-
Confidence 236799999999999999999999999998765432 245667984 148999999999899999999998765
Q ss_pred CeEEEE-EEeC-CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 383 DLVCSV-FNAR-DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 383 ~~~C~~-i~~~-~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+..|++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 282 ~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 282 QGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp TTEEEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CCeEEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 568998 7765 3789999999999999999999999999975
|
| >3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-59 Score=450.31 Aligned_cols=301 Identities=24% Similarity=0.370 Sum_probs=255.3
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
....+.+|+++|+||||+|++.|+|||||+++||+|.+|. .|..+.++.|||++|+|++.++|
T Consensus 10 ~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~--~~~~~~~~~y~~~~SsT~~~~~~--------------- 72 (329)
T 3c9x_A 10 SDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP--KSSATGHAIYTPSKSSTSKKVSG--------------- 72 (329)
T ss_dssp SSTTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC--HHHHTTSCCBCGGGCTTCEECTT---------------
T ss_pred CCCCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCC--ccccCCCCcCCcccCcCceEcCC---------------
Confidence 4567899999999999999999999999999999999998 77667889999999999998642
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh---------h
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS---------L 232 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s---------l 232 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+....+.+ ....+||||||++..+ +
T Consensus 73 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 144 (329)
T 3c9x_A 73 ---ASWSISYGDGSSSSGDVYTDKVTIGGF-----SVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTW 144 (329)
T ss_dssp ---CBEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCH
T ss_pred ---CeEEEEeCCCCcEEEEEEEEEEEECCE-----EEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCH
Confidence 899999999997779999999999986 89999999999876644 3678999999997654 4
Q ss_pred HHhhh-hhccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcE
Q 040562 233 ISQMK-TTIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309 (427)
Q Consensus 233 ~~ql~-~i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 309 (427)
+++|. .+.+++||+||.+...|+|+||| .+++.|+ +.|+|+... .++|.|.|++|+|+++.+.. ....+
T Consensus 145 ~~~l~~~i~~~~FS~~l~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~~~v~l~~i~v~~~~~~~-----~~~~a 216 (329)
T 3c9x_A 145 FSNAASSLAEPLFTADLRHGQNGSYNFGYIDTSVAKGP-VAYTPVDNS--QGFWEFTASGYSVGGGKLNR-----NSIDG 216 (329)
T ss_dssp HHHHHTTSSSSEEEEECCSSSCEEEEESSCCGGGCSSC-EEEEECBCT--TSSCEEEECCEEETTCCCCS-----CCEEE
T ss_pred HHHHHHhcCCCEEEEEecCCCCcEEEEeCcChhhcccc-eEEEEccCC--CceEEEEEeeEEECCEeccC-----CCceE
Confidence 44543 25689999999886559999999 4567776 999999843 67999999999999987642 36789
Q ss_pred EEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--CeEEE
Q 040562 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DLVCS 387 (427)
Q Consensus 310 iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~~C~ 387 (427)
||||||++++||++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|++...+ ...|+
T Consensus 217 iiDSGTt~~~lp~~~~~~i~~~i~~a~~~~~~~~~~~~C~-----~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~C~ 291 (329)
T 3c9x_A 217 IADTGTTLLLLDDNVVDAYYANVQSAQYDNQQEGVVFDCD-----EDLPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCF 291 (329)
T ss_dssp EECTTCCSEEECHHHHHHHHTTCTTCEEETTTTEEEEETT-----CCCCCEEEEETTEEEEECGGGGEEEESSTTCSEEE
T ss_pred EEECCCCcEeCCHHHHHHHHHhCCCcEEcCCCCEEEEECC-----CCCCcEEEEECCEEEEECHHHeeeeccCCCCCeEE
Confidence 9999999999999999999998855432222223556798 3689999999999999999999987633 36899
Q ss_pred E-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 388 V-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 388 ~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
+ |++.+ +.||||++|||++|+|||++++|||||++
T Consensus 292 ~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 292 GGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp ESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred EEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 8 88754 68999999999999999999999999985
|
| >4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-59 Score=450.28 Aligned_cols=300 Identities=24% Similarity=0.411 Sum_probs=255.1
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
++.++.+.+|+++|+||||||+++|++||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 4 ~l~n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~-------------- 67 (320)
T 4aa9_A 4 PLTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVC--KNHHRFDPRKSSTFRNLG-------------- 67 (320)
T ss_dssp ----CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHH--HTSCCBCGGGCTTCEEEE--------------
T ss_pred cceeccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCcccc--CCCCCCCCCCCcCeEcCC--------------
Confidence 4456678999999999999999999999999999999999984456 567999999999999986
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hH
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LI 233 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~ 233 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+ .+ ....+||||||++..+ ++
T Consensus 68 -----~~~~i~Yg~gs~-~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 136 (320)
T 4aa9_A 68 -----KPLSIHYGTGSM-EGFLGYDTVTVSNI-----VDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVF 136 (320)
T ss_dssp -----EEEEEEETTEEE-EEEEEEEEEEETTE-----EEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHH
T ss_pred -----cEEEEEECCcEE-EEEEEEEEEEECCE-----eecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHH
Confidence 899999999985 69999999999987 999999999998876 34 5678999999987543 33
Q ss_pred Hhh---hhhccCceEEEeecC-CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCC
Q 040562 234 SQM---KTTIAGKFSYCLVQQ-SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307 (427)
Q Consensus 234 ~ql---~~i~~~~Fs~~l~~~-~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 307 (427)
.+| +.+.+++||+||.+. ..|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. ....
T Consensus 137 ~~l~~~g~i~~~~Fs~~l~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~~~~~~~----~~~~ 208 (320)
T 4aa9_A 137 DNMMDRHLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGS-LHWVPVTL---QQYWQFTVDSVTINGVAVAC----VGGC 208 (320)
T ss_dssp HHHHHTTCSSSSEEEEECCSSSSCCEEEETCCCGGGEEEE-EEEEECSS---BTTBEEEECEEEETTEEEES----TTCE
T ss_pred HHHHhCCCCCCceEEEEeCCCCCCeEEEEcccCHHHccCc-eEEEEccc---CCceEEEEeEEEECCEEecc----CCCc
Confidence 333 557889999999986 349999999 5567776 99999986 78999999999999988764 3467
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEE
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCS 387 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~ 387 (427)
.++|||||+++++|++++++|.+++.+.... ...+..+|+... .+|+|+|+|+|.+++|++++|+.+ ++..|+
T Consensus 209 ~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~--~g~~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~--~~~~C~ 281 (320)
T 4aa9_A 209 QAILDTGTSVLFGPSSDILKIQMAIGATENR--YGEFDVNCGNLR---SMPTVVFEINGRDYPLSPSAYTSK--DQGFCT 281 (320)
T ss_dssp EEEECTTCSSEEEEHHHHHHHHHHTTCEECT--TSCEEECGGGGG---GCCCEEEEETTEEEEECHHHHEEE--ETTEEE
T ss_pred EEEEECCCCcEECCHHHHHHHHHHhCCcccC--CCcEEEeCCCCC---cCceEEEEECCEEEEECHHHhccC--CCCeEE
Confidence 8999999999999999999999998654321 124667899653 689999999999999999999977 345899
Q ss_pred E-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 388 V-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 388 ~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+ |++.. +.||||++|||++|+|||++++|||||+++
T Consensus 282 ~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 282 SGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp ESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 7 87643 579999999999999999999999999975
|
| >1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-59 Score=448.75 Aligned_cols=300 Identities=25% Similarity=0.368 Sum_probs=253.2
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
....+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|.. .++.|||++|+|++.+.|
T Consensus 10 ~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~--~~~~-~~~~y~~~~SsT~~~~~~--------------- 71 (329)
T 1oew_A 10 IDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT--ASEV-XQTIYTPSKSTTAKLLSG--------------- 71 (329)
T ss_dssp SSTTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC--GGGC--CCCBCGGGCTTCEEEEE---------------
T ss_pred cCCCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCC--cccc-ccCccCCccCccceecCC---------------
Confidence 4457889999999999999999999999999999999998 6755 788999999999999642
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh---------h
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS---------L 232 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s---------l 232 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+....+.+ ....+||||||++.++ +
T Consensus 72 ---~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 143 (329)
T 1oew_A 72 ---ATWSISYGDGSSSSGDVYTDTVSVGGL-----TVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTF 143 (329)
T ss_dssp ---EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCH
T ss_pred ---CeEEEEeCCCCcEEEEEEEEEEEECCE-----EEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCH
Confidence 899999999997779999999999986 89999999999877644 3678999999997654 4
Q ss_pred HHhhhh-hccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcE
Q 040562 233 ISQMKT-TIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309 (427)
Q Consensus 233 ~~ql~~-i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 309 (427)
+++|.. +.+++||+||.+...|+|+||| .+++.|+ +.|+|+... .++|.|.+++|+|+++.+.. ....+
T Consensus 144 ~~~l~~~i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~~~v~l~~i~v~~~~~~~-----~~~~a 215 (329)
T 1oew_A 144 FDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGS-ITYTAVSTK--QGFWEWTSTGYAVGSGTFKS-----TSIDG 215 (329)
T ss_dssp HHHHTTTSSSSEEEEECCSSSCEEEEESCCCTTSSSSC-CEEEECBCT--TSSCEEEEEEEEETTSCCEE-----EEEEE
T ss_pred HHHHHHhccCcEEEEEccCCCCeEEEEeccChHhcccc-eEEEEccCC--CceEEEEEeeEEECCeeccC-----CCceE
Confidence 455533 5689999999886559999999 5577777 999999843 67999999999999987653 25789
Q ss_pred EEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--CeEEE
Q 040562 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DLVCS 387 (427)
Q Consensus 310 iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~~C~ 387 (427)
||||||+++++|++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|+++..+ ...|+
T Consensus 216 iiDSGTt~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~-----~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~~C~ 290 (329)
T 1oew_A 216 IADTGTTLLYLPATVVSAYWAQVSGAKSSSSVGGYVFPCS-----ATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCF 290 (329)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETT-----CCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEE
T ss_pred EEeCCCCCEECCHHHHHHHHHhCCCcEEcCCCCEEEEECC-----CCCCcEEEEECCEEEEECHHHeeeeecCCCCCeEE
Confidence 9999999999999999999998854432222224556798 2689999999999999999999987632 46899
Q ss_pred E-EEeCC--CcceechhhhcceEEEEeC-CCCEEEEeeC
Q 040562 388 V-FNARD--DIPLYGNIMQTNFLIGYDI-EGRTVSFKPT 422 (427)
Q Consensus 388 ~-i~~~~--~~~ilG~~fl~~~y~vfD~-~~~riGfa~~ 422 (427)
+ |++.+ +.||||++|||++|+|||+ +++|||||++
T Consensus 291 ~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 291 GGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp ESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred EEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 8 88654 6899999999999999999 9999999985
|
| >1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=452.26 Aligned_cols=309 Identities=21% Similarity=0.356 Sum_probs=260.2
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP-PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
++.+..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ...| ..++.|||++|+|++...
T Consensus 11 ~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~------------- 75 (361)
T 1mpp_A 11 GLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGC--VGKRFFDPSSSSTFKETD------------- 75 (361)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTC--CSSCCBCGGGCTTCEEEE-------------
T ss_pred EeecCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccC--CCCCcCCCccCCceEecC-------------
Confidence 344567899999999999999999999999999999999997 5678 457899999999999986
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC------CC-CCCCceEeecCCCCChhH
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG------KF-NSKTDGIVGLGGGDASLI 233 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~------~~-~~~~~GilGLg~~~~sl~ 233 (427)
|.|.+.|++|++ .|.+++|+|+|++. .++++.|||+....+ .| ....+||||||++.+++.
T Consensus 76 ------~~~~i~Yg~Gs~-~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 143 (361)
T 1mpp_A 76 ------YNLNITYGTGGA-NGIYFRDSITVGGA-----TVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAM 143 (361)
T ss_dssp ------EEEEEECSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHH
T ss_pred ------CeEEEEECCceE-EEEEEEEEEEECCE-----EEeceEEEEEEeccCccccccccccCCCCCEEEeCCcccccc
Confidence 899999999995 69999999999986 899999999998765 34 567899999999765432
Q ss_pred ------------Hhh---hhhccCceEEEeecCC-CceeeeCC--CCcccCCCeeeeccccCCC-CccEEEEeeEEEecc
Q 040562 234 ------------SQM---KTTIAGKFSYCLVQQS-STKINFGT--NGIVSGSGVVSTPLLAKNP-KTFYSLTLDAISVGD 294 (427)
Q Consensus 234 ------------~ql---~~i~~~~Fs~~l~~~~-~G~l~fGg--~~~~~g~~~~~~p~~~~~~-~~~w~v~l~~i~v~~ 294 (427)
.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+..... ..+|.|.|++|+|++
T Consensus 144 ~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~~~~~~~~~v~l~~i~v~~ 222 (361)
T 1mpp_A 144 EAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGD-IQYTDVLKSRGGYFFWDAPVTGVKIDG 222 (361)
T ss_dssp HHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCSSSEEEEEESSCCGGGBSSC-CEEEECEEETTEEEEEEEEEEEEEETT
T ss_pred cccccccCCCHHHHHHHcCCCCCcEEEEEecCCCCCcEEEEecCChhhcCCc-eEEEEcccCCCceeEEEEEEeEEEECC
Confidence 233 4567899999999863 39999999 4567776 99999987421 128999999999999
Q ss_pred eEeeeeccCCCCCcEE-EccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCcc-CeEEEEE--e-----
Q 040562 295 QRLGVISGSNPGGDIV-IDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRF-PEVTIHF--R----- 365 (427)
Q Consensus 295 ~~~~~~~~~~~~~~~i-iDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~-P~i~~~f--~----- 365 (427)
+.+... ....+| |||||++++||++++++|++++.+....... .+..+|+... .+ |+|+|+| +
T Consensus 223 ~~~~~~----~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~~~~g-~~~~~C~~~~---~~~p~i~f~f~~g~~~~~ 294 (361)
T 1mpp_A 223 SDAVSF----DGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATESQQ-GYTVPCSKYQ---DSKTTFSLVLQKSGSSSD 294 (361)
T ss_dssp EEEEEE----EEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCEEETT-EEEEEHHHHT---TCCCEEEEEEECTTCSSC
T ss_pred eeeccC----CCCEEEEECCCCCceeCCHHHHHHHHHHhCCcccCCCC-cEEEECCCcc---cCCCcEEEEEEcCCcCCC
Confidence 887532 257899 9999999999999999999999775432111 4567899653 67 9999999 7
Q ss_pred CcEEEecCCceEEEeC-CCeEEEE-EEeC-CCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 366 DADVKLSTSNVFMNIS-EDLVCSV-FNAR-DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 366 g~~~~l~~~~y~~~~~-~~~~C~~-i~~~-~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
|.+++|++++|+++.. ++..|+. |++. ++.||||++|||++|+|||++++|||||+++|+.
T Consensus 295 g~~~~i~~~~y~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~~ 358 (361)
T 1mpp_A 295 TIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGY 358 (361)
T ss_dssp EEEEEEEGGGGEEECSSSSCEEEESEEEESSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTT
T ss_pred CeEEEECHHHhEEecCCCCCeeEEEEEeCCCCCEEEChHHhccEEEEEECCCCEEEEEEcccCC
Confidence 7999999999999875 3468986 8874 4789999999999999999999999999999975
|
| >1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-59 Score=448.09 Aligned_cols=297 Identities=24% Similarity=0.436 Sum_probs=254.9
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+.+..+.+|+++|.||||||++.|+|||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 6 l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~--------------- 68 (324)
T 1am5_A 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQAC--SNHNKFKPRQSSTYVETG--------------- 68 (324)
T ss_dssp EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHH--HTSCCBCGGGCTTCEEEE---------------
T ss_pred eecCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccc--cCCCcCCCccCCCeEeCC---------------
Confidence 445678999999999999999999999999999999999974457 467899999999999976
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hHH
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LIS 234 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~~ 234 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+ .| ....+||||||++..+ ++.
T Consensus 69 ----~~~~i~Yg~Gs~-~G~~~~D~v~~g~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 138 (324)
T 1am5_A 69 ----KTVDLTYGTGGM-RGILGQDTVSVGGG-----SDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFD 138 (324)
T ss_dssp ----EEEEEECSSCEE-EEEEEEEEEESSSS-----CEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHH
T ss_pred ----cEEEEEECCCCe-EEEEEECceeECCc-----EEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHH
Confidence 899999999987 59999999999987 899999999999866 34 5678999999998664 333
Q ss_pred hh---hhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCC
Q 040562 235 QM---KTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307 (427)
Q Consensus 235 ql---~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 307 (427)
+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. . +.
T Consensus 139 ~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~----~-~~ 209 (324)
T 1am5_A 139 NMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGS-IHWIPVTA---EKYWQVALDGITVNGQTAAC----E-GC 209 (324)
T ss_dssp HHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSC-CEEEEEEE---ETTEEEEECEEEETTEECCC----C-CE
T ss_pred hHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCc-eEEEecCC---CcEEEEEEeEEEECCceeec----c-Cc
Confidence 33 4577899999999864 39999999 4567776 99999986 67999999999999987543 2 28
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEE
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCS 387 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~ 387 (427)
.+||||||+++++|++++++|.+++.+. . ....+..+|+... .+|+|+|+|+|.+++|++++|+++. +..|+
T Consensus 210 ~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~--~~g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~--~~~C~ 281 (324)
T 1am5_A 210 QAIVDTGTSKIVAPVSALANIMKDIGAS-E--NQGEMMGNCASVQ---SLPDITFTINGVKQPLPPSAYIEGD--QAFCT 281 (324)
T ss_dssp EEEECTTCSSEEECTTTHHHHHHHHTCE-E--CCCCEECCTTSSS---SSCCEEEEETTEEEEECHHHHEEES--SSCEE
T ss_pred eEEEecCCccEECCHHHHHHHHHHhCCc-c--cCCcEEEeCCCcc---cCCcEEEEECCEEEEECHHHhcccC--CCeEE
Confidence 8999999999999999999999999765 2 1224567898653 6899999999999999999999986 55799
Q ss_pred E-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 388 V-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 388 ~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 282 ~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 282 SGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp ECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred EEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 6 8764 2579999999999999999999999999975
|
| >1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-59 Score=447.96 Aligned_cols=298 Identities=23% Similarity=0.394 Sum_probs=254.6
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCC--CCCC-------CCCCCCCCCCCCCCCCCcceeecCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQ--PCPP-------SQCYKQDNPLFDPQRSSTYKYLSCSS 150 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~--~c~~-------~~C~~~~~~~y~p~~Sst~~~~~c~~ 150 (427)
+..++...+.+|+++|.||||+|++.|+|||||+++||+|. +|.. ..| ..++.|||++|+|++...
T Consensus 3 ~~~~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C--~~~~~y~~~~SsT~~~~~--- 77 (334)
T 1j71_A 3 VPTTLINEGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFC--KQEGTFDPSSSSSAQNLN--- 77 (334)
T ss_dssp EEEEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGG--GSSCCBCGGGCTTCEEEE---
T ss_pred eeEEEecCCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccc--cCCCcCCcccCCCcccCC---
Confidence 34556667899999999999999999999999999999876 6762 246 467899999999999986
Q ss_pred CCCCCCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCC
Q 040562 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDA 230 (427)
Q Consensus 151 ~~C~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~ 230 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+.... ..+||||||++..
T Consensus 78 ----------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~~-----~~~GilGLg~~~~ 131 (334)
T 1j71_A 78 ----------------QDFSIEYGDLTSSQGSFYKDTVGFGGI-----SIKNQQFADVTTTS-----VDQGIMGIGFTAD 131 (334)
T ss_dssp ----------------EEEEEEBTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEES-----SSSCEEECSCGGG
T ss_pred ----------------CceEEEECCCCEEEEEEEEEEEEECCE-----EEccEEEEEEEecC-----CCccEEEEcCCcc
Confidence 899999999998779999999999986 89999999999863 5789999999764
Q ss_pred --------hhHHhh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecce
Q 040562 231 --------SLISQM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQ 295 (427)
Q Consensus 231 --------sl~~ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~ 295 (427)
+++.|| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++
T Consensus 132 ~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~g~ 207 (334)
T 1j71_A 132 EAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGT-LTALPVTS---SVELRVHLGSINFDGT 207 (334)
T ss_dssp SSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEE-EEEEECCC---SSSCEEEEEEEEETTE
T ss_pred cCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCc-eEEEEccC---CCeEEEEEeEEEECCE
Confidence 344444 45678999999987533 9999999 5678776 99999986 5699999999999999
Q ss_pred EeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCC-cceeccCCCCccCeEEEEE-eCcEEEecC
Q 040562 296 RLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPY-DLCYSISSRPRFPEVTIHF-RDADVKLST 373 (427)
Q Consensus 296 ~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~-~~C~~~~~~~~~P~i~~~f-~g~~~~l~~ 373 (427)
.+.. ...+||||||+++++|++++++|++++.+.... ....+. .+|+ .+|+|+|+| +|.+++|++
T Consensus 208 ~~~~------~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~~-~~~~~~~~~C~------~~p~i~f~f~~g~~~~i~~ 274 (334)
T 1j71_A 208 SVST------NADVVLDSGTTITYFSQSTADKFARIVGATWDS-RNEIYRLPSCD------LSGDAVFNFDQGVKITVPL 274 (334)
T ss_dssp EEEE------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEET-TTTEEECSSSC------CCSEEEEEESTTCEEEEEG
T ss_pred eccC------CccEEEeCCCCcEecCHHHHHHHHHHcCCcccC-CCceEEEEcCC------CCCceEEEEcCCcEEEECH
Confidence 8865 568999999999999999999999999876631 111344 7897 479999999 589999999
Q ss_pred CceEEEeCCCeEEEE-EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 374 SNVFMNISEDLVCSV-FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 374 ~~y~~~~~~~~~C~~-i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
++|+++..++..|++ |++. +.||||++|||++|+|||++++|||||+++|.+
T Consensus 275 ~~y~~~~~~~~~C~~~i~~~-~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 327 (334)
T 1j71_A 275 SELILKDSDSSICYFGISRN-DANILGDNFLRRAYIVYDLDDKTISLAQVKYTS 327 (334)
T ss_dssp GGGEEECSSSSCEEESEEEC-TTCEECHHHHTTEEEEEETTTTEEEEEEECCCS
T ss_pred HHheeecCCCCeeEEEEeEC-CCcEEChHhhccEEEEEECCCCEEEEEecCCCC
Confidence 999998765556998 7765 579999999999999999999999999999975
|
| >1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-59 Score=447.25 Aligned_cols=298 Identities=22% Similarity=0.412 Sum_probs=253.0
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
++.+..+.+|+++|+||||+|++.|+|||||+++||+|.+|....| ..++.|||++|+|++...
T Consensus 6 ~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~-------------- 69 (329)
T 1dpj_A 6 PLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLAC--FLHSKYDHEASSSYKANG-------------- 69 (329)
T ss_dssp ECEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHH--HTSCCBCGGGCTTCEEEE--------------
T ss_pred eeeecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCccc--CCcCcCCcccCcCeEECC--------------
Confidence 3445678999999999999999999999999999999999983347 467899999999999876
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh--------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS-------- 231 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s-------- 231 (427)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+ .| ....+||||||++.++
T Consensus 70 -----~~~~i~Yg~Gs-~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~ 138 (329)
T 1dpj_A 70 -----TEFAIQYGTGS-LEGYISQDTLSIGDL-----TIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPF 138 (329)
T ss_dssp -----EEEEEEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHH
T ss_pred -----cEEEEEECCce-EEEEEEEEEEEECCe-----EECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHH
Confidence 89999999995 459999999999986 899999999998765 34 4678999999998765
Q ss_pred --hHHhhhhhccCceEEEeecCC-----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeecc
Q 040562 232 --LISQMKTTIAGKFSYCLVQQS-----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISG 302 (427)
Q Consensus 232 --l~~ql~~i~~~~Fs~~l~~~~-----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 302 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+..
T Consensus 139 ~~l~~q-g~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~--- 210 (329)
T 1dpj_A 139 YNAIQQ-DLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGD-ITWLPVRR---KAYWEVKFEGIGLGDEYAEL--- 210 (329)
T ss_dssp HHHHHT-TCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEE-EEEEECSS---BTTBEEEEEEEEETTEEEEC---
T ss_pred HHHHhc-CCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCc-eEEEEcCC---CceEEEEeeeEEECCeEecC---
Confidence 3344 5577899999997652 39999999 4567776 99999986 67999999999999987753
Q ss_pred CCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC
Q 040562 303 SNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE 382 (427)
Q Consensus 303 ~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~ 382 (427)
.+..+||||||+++++|++++++|.+++.+.. .....+..+|+... .+|+|+|+|+|.+++|++++|+++..
T Consensus 211 --~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~--~~~g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~~- 282 (329)
T 1dpj_A 211 --ESHGAAIDTGTSLITLPSGLAEMINAEIGAKK--GWTGQYTLDCNTRD---NLPDLIFNFNGYNFTIGPYDYTLEVS- 282 (329)
T ss_dssp --SSCEEEECTTCSCEEECHHHHHHHHHHHTCEE--CTTSSEEECGGGGG---GCCCEEEEETTEEEEECTTTSEEEET-
T ss_pred --CCccEEeeCCCCcEECCHHHHHHHHHHhCCcc--CCCCeEEEECCCCC---cCCcEEEEECCEEEEECHHHhEecCC-
Confidence 36789999999999999999999999987541 11114556798653 68999999999999999999999865
Q ss_pred CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 383 DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 383 ~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
..|++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 283 -~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 283 -GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp -TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred -CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 47996 8754 2679999999999999999999999999975
|
| >2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-58 Score=446.45 Aligned_cols=299 Identities=19% Similarity=0.385 Sum_probs=253.8
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCC--CCC-------CCCCCCCCCCCCCCCCCCcceeecCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQ--PCP-------PSQCYKQDNPLFDPQRSSTYKYLSCSS 150 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~--~c~-------~~~C~~~~~~~y~p~~Sst~~~~~c~~ 150 (427)
+..++...+.+|+++|.||||+|++.|+|||||+++||++. +|. ...| ..++.|||++|+|++...
T Consensus 3 v~~~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C--~~~~~y~~~~SsT~~~~~--- 77 (342)
T 2qzx_A 3 VAVTLHNEAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFC--KSAGSYSPASSRTSQNLN--- 77 (342)
T ss_dssp EEEEEEECSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGG--GTTCCBCGGGCTTCEEEE---
T ss_pred eeEEEecCCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccc--cCCCcCCcccCCCcccCC---
Confidence 34455667899999999999999999999999999999866 675 1246 467899999999999986
Q ss_pred CCCCCCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCC
Q 040562 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDA 230 (427)
Q Consensus 151 ~~C~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~ 230 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+.... ..+||||||++..
T Consensus 78 ----------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~-----~~~GilGLg~~~~ 131 (342)
T 2qzx_A 78 ----------------TRFDIKYGDGSYAKGKLYKDTVGIGGV-----SVRDQLFANVWSTS-----ARKGILGIGFQSG 131 (342)
T ss_dssp ----------------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEEC-----SSSCEEECSCGGG
T ss_pred ----------------CcEEEEeCCCCeEEEEEEEEEEEECCE-----EecceEEEEEEecC-----CCcCEEEEccccc
Confidence 899999999998789999999999986 89999999999863 5789999999754
Q ss_pred --------hhHHhh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecce
Q 040562 231 --------SLISQM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQ 295 (427)
Q Consensus 231 --------sl~~ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~ 295 (427)
+++.|| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.|++|+|+++
T Consensus 132 ~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~g~ 207 (342)
T 2qzx_A 132 EATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGS-LVDLPITS---EKKLTVGLRSVNVRGR 207 (342)
T ss_dssp CSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSC-CEEEECCC---SSSCEEEEEEEEETTE
T ss_pred cCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecc-eEEEeccC---CceEEEEEeEEEECCE
Confidence 344444 45678999999987533 9999999 5678887 99999986 5689999999999999
Q ss_pred EeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCC-Cc-CCCcceeccCCCCccCeEEEEE-eCcEEEec
Q 040562 296 RLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQP-VE-GPYDLCYSISSRPRFPEVTIHF-RDADVKLS 372 (427)
Q Consensus 296 ~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~-~~-~~~~~C~~~~~~~~~P~i~~~f-~g~~~~l~ 372 (427)
.+.. ...+||||||++++||++++++|++++.+...... .. .+..+|+ .+|+|+|+| +|.+++|+
T Consensus 208 ~~~~------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~------~~p~i~f~f~~g~~~~i~ 275 (342)
T 2qzx_A 208 NVDA------NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADCK------TSGTIDFQFGNNLKISVP 275 (342)
T ss_dssp EEEE------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECTTSCEEEEECTT------CCCEEEEEETTTEEEEEE
T ss_pred ecCC------CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeeccCCCcEEEEECC------CCCcEEEEECCCcEEEEc
Confidence 8865 56899999999999999999999999987654221 22 3556797 479999999 57999999
Q ss_pred CCceEEEeC-----CCeEEEE-EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 373 TSNVFMNIS-----EDLVCSV-FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 373 ~~~y~~~~~-----~~~~C~~-i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+++|+++.. ++..|++ |++. +.||||++|||++|+|||++++|||||+++|.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~C~~~i~~~-~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 334 (342)
T 2qzx_A 276 VSEFLFQTYYTSGKPFPKCEVRIRES-EDNILGDNFLRSAYVVYNLDDKKISMAPVKYTS 334 (342)
T ss_dssp GGGGEECCBCTTSCBCSSEEESEEEC-SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred HHHhcccccccCCCCCCccEEEEecC-CCcEeChHhhhcEEEEEECCCCEEEEEeeCCCC
Confidence 999998742 2357998 7765 579999999999999999999999999999975
|
| >3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=441.75 Aligned_cols=298 Identities=21% Similarity=0.386 Sum_probs=256.6
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeee-----CCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQ-----CQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCA 154 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~-----~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~ 154 (427)
+..++...+.+|+++|.||||||++.|+|||||+++||+ |.+|. .| ..++.|||++|+|++...
T Consensus 3 i~~~l~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~--~C--~~~~~y~~~~SsT~~~~~------- 71 (339)
T 3fv3_A 3 ISLSLINEGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGV--DC--KSSGTFTPSSSSSYKNLG------- 71 (339)
T ss_dssp EEEEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTC--CT--TTTCCBCGGGCTTCEEEE-------
T ss_pred eeeEEEcCCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCC--CC--CCCCcCCCccCcceeeCC-------
Confidence 456677788999999999999999999999999999998 44444 78 468899999999999987
Q ss_pred CCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCCh---
Q 040562 155 PPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDAS--- 231 (427)
Q Consensus 155 ~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s--- 231 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+ .+||||||++..+
T Consensus 72 ------------~~~~i~Yg~gs~~~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~-----~~GilGLg~~~~~~~~ 129 (339)
T 3fv3_A 72 ------------AAFTIRYGDGSTSQGTWGKDTVTINGV-----SITGQQIADVTQTSV-----DQGILGIGYTSNEAVY 129 (339)
T ss_dssp ------------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEESS-----SSCEEECSCGGGCCCB
T ss_pred ------------ceEEEEECCCceEEEEEEEEEEEECCE-----EECceEEEEEEecCC-----CceeEEecCccccccc
Confidence 899999999987789999999999987 999999999998753 5899999997643
Q ss_pred -------------hHHhh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEE
Q 040562 232 -------------LISQM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAIS 291 (427)
Q Consensus 232 -------------l~~ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~ 291 (427)
++.|| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|++++|+
T Consensus 130 ~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~ 205 (339)
T 3fv3_A 130 DTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGK-LVAEQVTS---SQALTISLASVN 205 (339)
T ss_dssp CTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSC-CEEEEBCC---SSSCEEEEEEEE
T ss_pred cccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecc-eEEEeccc---CccEEEEEEEEE
Confidence 44554 45678999999988643 9999999 6778887 99999987 568999999999
Q ss_pred ecceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccC--CCcCCCcceeccCCCCccCeEEEEEe-CcE
Q 040562 292 VGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQ--PVEGPYDLCYSISSRPRFPEVTIHFR-DAD 368 (427)
Q Consensus 292 v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~--~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~ 368 (427)
|+++.+.. ...++|||||++++||++++++|++++.+..... ....+..+|+. ..+|+|+|+|+ |.+
T Consensus 206 v~g~~~~~------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~----~~~p~i~f~f~~g~~ 275 (339)
T 3fv3_A 206 LKGSSFSF------GDGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQYLYFIDCNT----DTSGTTVFNFGNGAK 275 (339)
T ss_dssp ESSCEEEE------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEEEEEECTTC----CCCSEEEEEETTSCE
T ss_pred ECCEeecC------CccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCceEEEecCC----CCCCcEEEEECCCCE
Confidence 99998876 4689999999999999999999999998765421 11246678985 25899999995 799
Q ss_pred EEecCCceEEEeCCCeEEEE-EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 369 VKLSTSNVFMNISEDLVCSV-FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 369 ~~l~~~~y~~~~~~~~~C~~-i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
++||+++|+++..+ ..|+. |++ ++.||||++|||++|+|||++++|||||+++|++
T Consensus 276 ~~v~~~~~~~~~~~-~~C~~~i~~-~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~ 332 (339)
T 3fv3_A 276 ITVPNTEYVYQNGD-GTCLWGIQP-SDDTILGDNFLRHAYLLYNLDANTISIAQVKYTT 332 (339)
T ss_dssp EEEEGGGGEEECSS-SCEEESEEE-CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred EEECHHHheeeCCC-CeEEEEEEe-CCcEEeChHHHhCEEEEEECCCCEEEEEecCCCC
Confidence 99999999998644 46976 887 5789999999999999999999999999999985
|
| >1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=445.37 Aligned_cols=297 Identities=26% Similarity=0.476 Sum_probs=254.2
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCC
Q 040562 86 PNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEG 165 (427)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~ 165 (427)
..+.+|+++|.||||+|++.|+|||||+++||+|.+|....| ..++.|||++|+|++...
T Consensus 9 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~------------------ 68 (329)
T 1htr_B 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQAC--TSHSRFNPSESSTYSTNG------------------ 68 (329)
T ss_dssp GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHH--HTSCCBCGGGCTTCEEEE------------------
T ss_pred EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CCCCcCCCccCCCeEECC------------------
Confidence 778999999999999999999999999999999999974458 467899999999999976
Q ss_pred CceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hHHhh-
Q 040562 166 NCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LISQM- 236 (427)
Q Consensus 166 ~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~~ql- 236 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+ .| ....+||||||++..+ ++.+|
T Consensus 69 -~~~~i~Yg~gs~-~G~~~~D~v~~g~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~ 141 (329)
T 1htr_B 69 -QTFSLQYGSGSL-TGFFGYDTLTVQSI-----QVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMV 141 (329)
T ss_dssp -EEEEEEETTEEE-EEEEEEEEEEETTE-----EEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHH
T ss_pred -cEEEEEeCCCCe-EEEEEeeeEEEcce-----EECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHH
Confidence 899999999987 59999999999986 899999999998766 34 5678999999998765 33333
Q ss_pred --hhhccCceEEEeecCC---CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcE
Q 040562 237 --KTTIAGKFSYCLVQQS---STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309 (427)
Q Consensus 237 --~~i~~~~Fs~~l~~~~---~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 309 (427)
+.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+... ..+..+
T Consensus 142 ~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~~---~~~~~a 214 (329)
T 1htr_B 142 QEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQ-IYWAPVTQ---ELYWQIGIEEFLIGGQASGWC---SEGCQA 214 (329)
T ss_dssp HTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEE-EEEEEBCS---SSSCEEEECEEEETTEECCTT---TTCEEE
T ss_pred hcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCc-eEEEECCC---CceEEEEEeEEEECCceeeec---CCCceE
Confidence 5577899999999874 39999999 4567776 99999986 679999999999999876411 336789
Q ss_pred EEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEE-
Q 040562 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSV- 388 (427)
Q Consensus 310 iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~- 388 (427)
||||||+++++|++++++|.+++.+.... ...+..+|+... .+|+|+|+|+|.+++|++++|+++.. + .|++
T Consensus 215 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~--~g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~~-g-~C~~~ 287 (329)
T 1htr_B 215 IVDTGTSLLTVPQQYMSALLQATGAQEDE--YGQFLVNCNSIQ---NLPSLTFIINGVEFPLPPSSYILSNN-G-YCTVG 287 (329)
T ss_dssp EECTTCCSEEEEGGGHHHHHHHHTCEECT--TSCEEECGGGGG---GSCCEEEEETTEEEEECHHHHEEECS-S-CEEES
T ss_pred EEecCCccEECCHHHHHHHHHHhCCeecC--CCeEEEeCCCcc---cCCcEEEEECCEEEEECHHHhcccCC-C-EEEEE
Confidence 99999999999999999999998765422 114567899653 68999999999999999999999876 4 8996
Q ss_pred EEeC------CC-cceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 389 FNAR------DD-IPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 389 i~~~------~~-~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
|++. ++ .||||++|||++|+|||++++|||||+++
T Consensus 288 ~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 288 VEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp EEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 8753 24 79999999999999999999999999975
|
| >3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=448.20 Aligned_cols=300 Identities=22% Similarity=0.358 Sum_probs=258.0
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC--CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP--PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~--~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
.++.+..+.+|+++|.||||||+++|++||||+++||+|..|. ...| ..++.|||++|+|++...
T Consensus 10 ~~l~n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~~----------- 76 (341)
T 3k1w_A 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC--VYHKLFDASDSSSYKHNG----------- 76 (341)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHH--HTSCCBCGGGCTTCEEEE-----------
T ss_pred ccceEccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcc--cCCCCCCCCcCcCeeECC-----------
Confidence 4455667999999999999999999999999999999999997 3357 467899999999999876
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCCCh-----
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGDAS----- 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s----- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .+ ++.|||+....+. + ....+||||||++..+
T Consensus 77 --------~~~~i~Yg~gs~-~G~~~~D~v~ig~~-----~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~ 141 (341)
T 3k1w_A 77 --------TELTLRYSTGTV-SGFLSQDIITVGGI-----TV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVT 141 (341)
T ss_dssp --------EEEEEEETTEEE-EEEEEEEEEEETTE-----EE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCC
T ss_pred --------CEEEEEECCcEE-EEEEEEEEEEECCc-----ee-eEEEEEEEEccccccccCCcceEEECCchhhcccCCC
Confidence 899999999984 69999999999987 88 9999999998763 4 5678999999998765
Q ss_pred -----hHHhhhhhccCceEEEeecCC------CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 232 -----LISQMKTTIAGKFSYCLVQQS------STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 232 -----l~~ql~~i~~~~Fs~~l~~~~------~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.
T Consensus 142 ~~~~~l~~q-g~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~~~~~~ 216 (341)
T 3k1w_A 142 PIFDNIISQ-GVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN-FHYINLIK---TGVWQIQMKGVSVGSSTLL 216 (341)
T ss_dssp CHHHHHHHH-TCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEE-EEEEECSS---TTSCEEEECCEEETTEEEE
T ss_pred CHHHHHHHC-CCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCc-eEEEecCC---CCEEEEEEeEEEECCEEee
Confidence 4445 6678999999998874 39999999 5667776 99999986 7899999999999998754
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEE
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFM 378 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~ 378 (427)
. .....++|||||+++++|++++++|++++.+..... .+..+|.... .+|+|+|+|+|.+++|++++|++
T Consensus 217 ~----~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~---g~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~~~~ 286 (341)
T 3k1w_A 217 C----EDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLF---DYVVKCNEGP---TLPDISFHLGGKEYTLTSADYVF 286 (341)
T ss_dssp C----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSS---CEEEEGGGGG---GCCCEEEEETTEEEEECHHHHBC
T ss_pred c----CCCCEEEEECCCChhcCCHHHHHHHHHHcCCeecCC---CeEEeCCCCC---cCCcEEEEECCEEEEECHHHhee
Confidence 4 346889999999999999999999999997654322 2667898653 68999999999999999999998
Q ss_pred EeCC--CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 379 NISE--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 379 ~~~~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+... +..|++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 287 ~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 287 QESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp CSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 7542 578997 8763 2689999999999999999999999999985
|
| >1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-58 Score=448.70 Aligned_cols=295 Identities=19% Similarity=0.365 Sum_probs=253.0
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+.+..+.+|+++|+||||+|++.|+|||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 56 l~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~--------------- 118 (375)
T 1miq_A 56 LDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGC--SIKNLYDSSKSKSYEKDG--------------- 118 (375)
T ss_dssp GGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGG--GGSCCBCGGGCTTCEEEE---------------
T ss_pred cccCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccc--cCCCcCCCccCCceEECC---------------
Confidence 334578899999999999999999999999999999999975578 468999999999999976
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEee----cCCCC-CCCCceEeecCCCCCh------
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK----NGGKF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~----~~~~~-~~~~~GilGLg~~~~s------ 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .+++ .|||+.. .. .| ....+||||||++.++
T Consensus 119 ----~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~v~~-~Fg~~~~~~~~~~-~f~~~~~dGilGLg~~~~s~~~~~~ 186 (375)
T 1miq_A 119 ----TKVDITYGSGTV-KGFFSKDLVTLGHL-----SMPY-KFIEVTDTDDLEP-IYSSVEFDGILGLGWKDLSIGSIDP 186 (375)
T ss_dssp ----EEEEEEETTEEE-EEEEEEEEEEETTE-----EEEE-EEEEEEECGGGTT-HHHHSCCCEEEECSSCCTTCSSCCC
T ss_pred ----cEEEEEeCCCeE-EEEEEEEEEEEcCc-----eECc-EEEEEEecccccc-ccccCCCceEEeCCCCcccccCCCC
Confidence 899999999995 59999999999986 8899 9999998 44 44 4678999999998765
Q ss_pred hHHhh---hhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 232 LISQM---KTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 232 l~~ql---~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
++.+| +.+.+++||+||.+.+ .|+|+||| .+++.|+ +.|+|+.. .++|.|.++ |+|+++.+ .
T Consensus 187 ~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~-i~v~g~~~-~----- 255 (375)
T 1miq_A 187 IVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGN-ITYEKLNH---DLYWQIDLD-VHFGKQTM-E----- 255 (375)
T ss_dssp HHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEE-EEEEEBSS---SSSSEEEEE-EEETTEEE-E-----
T ss_pred HHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCc-eEEEecCC---CceEEEEEE-EEECCEEc-c-----
Confidence 23333 5578899999999874 29999999 4567776 99999986 679999999 99999887 2
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC--C
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS--E 382 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~--~ 382 (427)
+..+||||||+++++|++++++|.+++.+...... ..+..+|+. ..+|+|+|+|+|.+++|++++|+++.. +
T Consensus 256 -~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~~-g~~~~~C~~----~~~P~i~f~f~g~~~~l~~~~yi~~~~~~g 329 (375)
T 1miq_A 256 -KANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFL-PFYVTTCDN----KEMPTLEFKSANNTYTLEPEYYMNPILEVD 329 (375)
T ss_dssp -EEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTS-SCEEEETTC----TTCCCEEEECSSCEEEECGGGSEEESSSSS
T ss_pred -cceEEecCCCccEEcCHHHHHHHHHHhCCcccCCC-CeEEEECCC----CCCCcEEEEECCEEEEECHHHhEeeccCCC
Confidence 67899999999999999999999999976532221 146678986 268999999999999999999999875 2
Q ss_pred CeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 383 DLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 383 ~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
...|+. |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 330 ~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 330 DTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp CSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 458986 88765 689999999999999999999999999975
|
| >3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=442.37 Aligned_cols=300 Identities=22% Similarity=0.396 Sum_probs=254.4
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCC--CC-------CCCCCCCCCCCCCCCCCCcceeecCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQP--CP-------PSQCYKQDNPLFDPQRSSTYKYLSCSS 150 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~--c~-------~~~C~~~~~~~y~p~~Sst~~~~~c~~ 150 (427)
+..++...+.+|+++|.||||||++.|++||||+++||++.. |. ...| ..++.|||++|+|++...
T Consensus 3 v~~~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C--~~~~~y~~~~SsT~~~~~--- 77 (342)
T 3pvk_A 3 VPVTLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFC--KQKGTYDPSGSSASQDLN--- 77 (342)
T ss_dssp EEEEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGG--GTTCCBCGGGCTTCEEEE---
T ss_pred cceEEecCCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCC--CCCCcCCCccCcceeecC---
Confidence 345666788999999999999999999999999999998653 52 2357 467899999999999987
Q ss_pred CCCCCCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCC
Q 040562 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDA 230 (427)
Q Consensus 151 ~~C~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~ 230 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++... ..+||||||++..
T Consensus 78 ----------------~~~~i~Yg~gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~-----~~~GilGLg~~~~ 131 (342)
T 3pvk_A 78 ----------------TPFKIGYGDGSSSQGTLYKDTVGFGGV-----SIKNQVLADVDSTS-----IDQGILGVGYKTN 131 (342)
T ss_dssp ----------------EEEEEECSSSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEES-----SSSCEEECSCGGG
T ss_pred ----------------CeEEEEecCCCeEEEEEEEEEEEECCE-----EecceEEEEEEccC-----CCccEEEecCccc
Confidence 899999999997779999999999987 99999999998864 5789999999863
Q ss_pred -------hhHHhh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceE
Q 040562 231 -------SLISQM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQR 296 (427)
Q Consensus 231 -------sl~~ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~ 296 (427)
+++.|| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.
T Consensus 132 ~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~g~~ 207 (342)
T 3pvk_A 132 EAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGS-LIALPVTS---DRELRISLGSVEVSGKT 207 (342)
T ss_dssp CSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSC-CEEEECCC---SSSCEEEEEEEEETTEE
T ss_pred cccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeee-eEEeecCc---cceEEEEEeEEEECCEE
Confidence 344444 55788999999987643 9999999 6778887 99999987 56899999999999998
Q ss_pred eeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc--CCCcceeccCCCCccCeEEEEEe-CcEEEecC
Q 040562 297 LGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE--GPYDLCYSISSRPRFPEVTIHFR-DADVKLST 373 (427)
Q Consensus 297 ~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~--~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~ 373 (427)
+... +..++|||||++++||++++++|++++.+........ .+..+|+ ..|+|+|+|+ |.+++||+
T Consensus 208 ~~~~-----~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~------~~p~i~f~f~~g~~~~vp~ 276 (342)
T 3pvk_A 208 INTD-----NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCN------LSGDVVFNFSKNAKISVPA 276 (342)
T ss_dssp EEEE-----EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTTSCEEEEECSC------CCSEEEEEESTTCEEEEEG
T ss_pred ecCC-----CceEEEeCCCCCeecCHHHHHHHHHHcCCeecccCCCceEEEEecC------CCCceEEEECCCCEEEEcH
Confidence 8763 4789999999999999999999999998776433221 3677898 4599999998 79999999
Q ss_pred CceEEEeC--CC---eEEEE-EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 374 SNVFMNIS--ED---LVCSV-FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 374 ~~y~~~~~--~~---~~C~~-i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
++|+++.. ++ ..|++ |++. +.||||++|||++|+|||++++|||||+++|++
T Consensus 277 ~~~~~~~~~~~g~~~~~C~~~i~~~-~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~ 334 (342)
T 3pvk_A 277 SEFAASLQGDDGQPYDKCQLLFDVN-DANILGDNFLRSAYIVYDLDDNEISLAQVKYTS 334 (342)
T ss_dssp GGGEEC----------CEEESEEEC-TTCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred HHheeeccccCCCcCCeeEEEEeeC-CCeEeCHHHHhcEEEEEECCCCEEEEEecCCCC
Confidence 99998732 22 67988 7774 789999999999999999999999999999974
|
| >2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-58 Score=458.59 Aligned_cols=297 Identities=20% Similarity=0.358 Sum_probs=252.1
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.++.+..+.+|+++|+||||||++.|++||||+++||+|.+|....| ..++.|||++|+|++...
T Consensus 130 ~~L~n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C--~~~~~ydps~SsT~~~~~------------- 194 (453)
T 2bju_A 130 IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGC--LTKHLYDSSKSRTYEKDG------------- 194 (453)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTG--GGSCCBCGGGCTTCEEEE-------------
T ss_pred eeeEecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCcccc--CCCCcCCCccCCceeECC-------------
Confidence 33445678999999999999999999999999999999999985578 568999999999999976
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecC--CC-C-CCCCceEeecCCCCCh-----
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNG--GK-F-NSKTDGIVGLGGGDAS----- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~--~~-~-~~~~~GilGLg~~~~s----- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++ +.|||+.... +. | ....+||||||++.++
T Consensus 195 ------~~~~i~YgdGs~-~G~~~~Dtv~ig~~-----~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~ 261 (453)
T 2bju_A 195 ------TKVEMNYVSGTV-SGFFSKDLVTVGNL-----SLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVD 261 (453)
T ss_dssp ------EEEEEECSSSEE-EEEEEEEEEEETTE-----EEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCC
T ss_pred ------cEEEEEcCCCCe-EEEEEEEEEEEeCc-----EEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCC
Confidence 899999999995 59999999999986 888 9999999986 43 3 4678999999997654
Q ss_pred -hHHhh---hhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccC
Q 040562 232 -LISQM---KTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS 303 (427)
Q Consensus 232 -l~~ql---~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 303 (427)
++.+| +.+.+++||+||.+.+ .|+|+||| .+++.|+ +.|+|+.. .++|.|.++ |+|+++ +.
T Consensus 262 ~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~-l~~~pv~~---~~~w~V~l~-I~Vgg~-~~----- 330 (453)
T 2bju_A 262 PIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGP-LTYEKLNH---DLYWQITLD-AHVGNI-ML----- 330 (453)
T ss_dssp CHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEE-EEEEEEEE---ETTEEEEEE-EEETTE-EE-----
T ss_pred cHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCc-eEEEecCC---CceEEEEEE-EEECcE-Ee-----
Confidence 23333 5577899999999863 39999999 4567776 99999986 679999999 999994 32
Q ss_pred CCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-CCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC
Q 040562 304 NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-GPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE 382 (427)
Q Consensus 304 ~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~ 382 (427)
.+..+||||||+++++|++++++|.+++.+.. .... .+..+|+. ..+|+|+|+|+|.+++|++++|+++...
T Consensus 331 -~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~--~~~g~~~~v~C~~----~~~P~itf~fgg~~~~l~~~~yi~~~~~ 403 (453)
T 2bju_A 331 -EKANCIVDSGTSAITVPTDFLNKMLQNLDVIK--VPFLPFYVTLCNN----SKLPTFEFTSENGKYTLEPEYYLQHIED 403 (453)
T ss_dssp -EEEEEEECTTCCSEEECHHHHHHHTTTSSCEE--CTTSSCEEEETTC----TTCCCEEEECSSCEEEECHHHHEEECTT
T ss_pred -ccccEEEcCCCCeEecCHHHHHHHHHHhCCcc--cCCCceEEEecCC----CCCCcEEEEECCEEEEECHHHhEeeccc
Confidence 26789999999999999999999999886542 1121 35678985 2689999999999999999999998753
Q ss_pred --CeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 383 --DLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 383 --~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+..|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 404 ~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 404 VGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp TSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 468996 88765 489999999999999999999999999986
|
| >1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-58 Score=459.64 Aligned_cols=305 Identities=24% Similarity=0.389 Sum_probs=253.1
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP-PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
.++.+..+.+|+++|+||||||+|.|+|||||+++||+|..|. ...|. .++.|||++|+||+...
T Consensus 44 ~~l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------ 109 (478)
T 1qdm_A 44 VALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACY--LHSRYKAGASSTYKKNG------------ 109 (478)
T ss_dssp GGGCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGG--GSCCBCGGGCTTCBCCC------------
T ss_pred EEeEeccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCcccc--CCCCCCcccCCCeeeCC------------
Confidence 3444557889999999999999999999999999999999996 34684 57899999999999865
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------ 231 (427)
+.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ...++||||||++.++
T Consensus 110 -------~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p 176 (478)
T 1qdm_A 110 -------KPAAIQYGTGSI-AGYFSEDSVTVGDL-----VVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVP 176 (478)
T ss_dssp -------CEEEEEETTEEE-EEEEEEEEEEETTE-----EEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCC
T ss_pred -------cEEEEEcCCCCe-EEEEEEEEEEECCe-----EECCEEEEEEEecCCcccccccccceecccccccccCCCCc
Confidence 899999999985 59999999999986 899999999998765 34 5678999999998765
Q ss_pred ----hHHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 232 ----LISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 232 ----l~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
+++| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. .++|.|.+++|+|+++.+...
T Consensus 177 ~~~~l~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~- 250 (478)
T 1qdm_A 177 VWYKMIEQ-GLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGE-HTYVPVTQ---KGYWQFDMGDVLVGGKSTGFC- 250 (478)
T ss_dssp HHHHHTTT-TCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEE-EEEEEEEE---ETTEEEEECCEEETTEECSTT-
T ss_pred HHHHHHHC-CCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCC-ceEEeccC---CCeEEEEEeEEEECCEEEeec-
Confidence 3344 5577899999998752 39999999 5567776 99999986 679999999999999876543
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhc--------------------------------------------
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIA-------------------------------------------- 337 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~-------------------------------------------- 337 (427)
..+..+||||||+++++|++++++|.+++.+...
T Consensus 251 --~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~~~~~~ 328 (478)
T 1qdm_A 251 --AGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGV 328 (478)
T ss_dssp --TTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC--------
T ss_pred --CCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccCccccc
Confidence 2468899999999999999999999998864210
Q ss_pred ---------------------------------------------------------cCC-CcCCCcceeccCCCCccCe
Q 040562 338 ---------------------------------------------------------AQP-VEGPYDLCYSISSRPRFPE 359 (427)
Q Consensus 338 ---------------------------------------------------------~~~-~~~~~~~C~~~~~~~~~P~ 359 (427)
.+. ...+.++|.... .+|+
T Consensus 329 ~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~---~lP~ 405 (478)
T 1qdm_A 329 SAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLG---SMPD 405 (478)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGT---TCCC
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccccc---cccc
Confidence 000 013445676543 6899
Q ss_pred EEEEEeCcEEEecCCceEEEeCC--CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 360 VTIHFRDADVKLSTSNVFMNISE--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 360 i~~~f~g~~~~l~~~~y~~~~~~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
|+|+|+|++|+|+|++|+++..+ +..|++ |+.. ++.||||+.|||++|+|||++++|||||++.
T Consensus 406 i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~ 478 (478)
T 1qdm_A 406 IEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478 (478)
T ss_dssp EEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence 99999999999999999998754 358998 7743 2579999999999999999999999999863
|
| >3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-57 Score=448.77 Aligned_cols=325 Identities=19% Similarity=0.375 Sum_probs=254.0
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCC-----
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIK----- 158 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~----- 158 (427)
+..+++|+++|.||||||++.|+|||||+++||+|.+| .+|+|++.++|.++.|.. +..
T Consensus 17 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~---------------~~Sst~~~~~C~s~~C~~~~~~~c~~c 81 (403)
T 3aup_A 17 DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ---------------YSSKTYQAPFCHSTQCSRANTHQCLSC 81 (403)
T ss_dssp CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC---------------CCCSSCBCCCTTBHHHHHTTCCCEEEC
T ss_pred CCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC---------------CCCCCCCccCCCCccccCccccCcccc
Confidence 45789999999999999999999999999999998743 368899999999888875 321
Q ss_pred -----CCCCCCCCceeeeeeC-CCCeEEEEEEEEEEEEcCCCCCc------eecCcEEEEeEeecCCC-C-CCCCceEee
Q 040562 159 -----DSCSAEGNCRYSVSYG-DDSFSNGDLATETVTVGSTSGQA------VALPEIVFGCGTKNGGK-F-NSKTDGIVG 224 (427)
Q Consensus 159 -----~~c~~~~~~~~~~~Y~-~g~~~~G~~~~D~v~ig~~~~~~------~~~~~~~fg~~~~~~~~-~-~~~~~GilG 224 (427)
..|. .+.|.|.+.|+ +|+.+.|.+++|+|+|++.++.. +.++++.|||+...... + ....+||||
T Consensus 82 ~~~~~s~~~-~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlG 160 (403)
T 3aup_A 82 PAASRPGCH-KNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAG 160 (403)
T ss_dssp SSSCBTTBC-SSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEE
T ss_pred CCCCCCCCC-CCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEE
Confidence 1232 24699999998 78878899999999999843322 58899999999987543 3 467899999
Q ss_pred cCCCCChhHHhhhh--hccCceEEEeecC--CCceeeeCC-CCcc--c-C----CCeeeeccccCCCCccEEEEeeEEEe
Q 040562 225 LGGGDASLISQMKT--TIAGKFSYCLVQQ--SSTKINFGT-NGIV--S-G----SGVVSTPLLAKNPKTFYSLTLDAISV 292 (427)
Q Consensus 225 Lg~~~~sl~~ql~~--i~~~~Fs~~l~~~--~~G~l~fGg-~~~~--~-g----~~~~~~p~~~~~~~~~w~v~l~~i~v 292 (427)
||++.+++.+|++. +.+++||+||.+. ..|+|+||| ..++ . | ..+.|+|++..+ .++|.|+|++|+|
T Consensus 161 Lg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGgd~~~~~~~~G~~~~~~l~~~Pl~~~~-~~~y~v~l~~i~v 239 (403)
T 3aup_A 161 LGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITL-QGEYNVRVNSIRI 239 (403)
T ss_dssp CSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESCHHHHC--CTTCCTTTTEEEEECEECT-TSCEEECEEEEEE
T ss_pred CCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECCCchhccccccccccCceeecccccCC-CCcceEEEEEEEE
Confidence 99999999998865 5679999999884 239999999 3344 3 4 249999999854 3799999999999
Q ss_pred cceEe-eeeccC-----CCCCcEEEccCCccccccHHHHHHHHHHHHhhhcc-CCC--cCCCcceeccCCCCccCeEEEE
Q 040562 293 GDQRL-GVISGS-----NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAA-QPV--EGPYDLCYSISSRPRFPEVTIH 363 (427)
Q Consensus 293 ~~~~~-~~~~~~-----~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~-~~~--~~~~~~C~~~~~~~~~P~i~~~ 363 (427)
+++.+ .++... .+..++||||||++++||+++|++|+++|.+++.. ... ......|+.-.....+|+|+|+
T Consensus 240 ~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~~c~~~~~~P~i~f~ 319 (403)
T 3aup_A 240 NQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINAYPSVDLV 319 (403)
T ss_dssp TTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEECGGGCCCCCCEEEE
T ss_pred CCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceEECCCcCcCCcEEEE
Confidence 99988 543211 22457999999999999999999999999765532 110 0122345533222268999999
Q ss_pred EeCc---EEEecCCceEEEeCCCeEEEEEEeCC----CcceechhhhcceEEEEeCCCCEEEE-------eeCCCCC
Q 040562 364 FRDA---DVKLSTSNVFMNISEDLVCSVFNARD----DIPLYGNIMQTNFLIGYDIEGRTVSF-------KPTDCSK 426 (427)
Q Consensus 364 f~g~---~~~l~~~~y~~~~~~~~~C~~i~~~~----~~~ilG~~fl~~~y~vfD~~~~riGf-------a~~~c~~ 426 (427)
|+|. +++|++++|+++..++..|++|++.+ +.||||+.|||++|+|||++++|||| ++++|++
T Consensus 320 f~g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~~~~~~~~~C~~ 396 (403)
T 3aup_A 320 MDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCAD 396 (403)
T ss_dssp ESSTTCCEEEECHHHHEEEC---CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEESSCGGGGTCCGGG
T ss_pred EcCCCceEEEEcccceEEEcCCCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEecccccccCCCccc
Confidence 9985 99999999999876667899988754 57999999999999999999999999 7778865
|
| >3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=453.14 Aligned_cols=296 Identities=17% Similarity=0.279 Sum_probs=254.1
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.++.+..+.+|+++|+||||||++.|++||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 129 ~pL~n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C--~~~~~ydps~SsT~~~~~------------- 193 (451)
T 3qvc_A 129 VELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESC--ESKNHYDSSKSKTYEKDD------------- 193 (451)
T ss_dssp CCGGGGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGG--TTSCCBCGGGCTTCEEEE-------------
T ss_pred cceeecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCcccc--CCCCCCCCCCCcccccCC-------------
Confidence 34445678899999999999999999999999999999999975578 578999999999999876
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEee----cCCCC-CCCCceEeecCCCCCh----
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK----NGGKF-NSKTDGIVGLGGGDAS---- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~----~~~~~-~~~~~GilGLg~~~~s---- 231 (427)
+.|.+.|++|+ +.|.+++|+|+|++. .++ +.|||+.. ..+ | ....+||||||++..+
T Consensus 194 ------~~f~i~YgdGs-~~G~~~~Dtv~igg~-----~v~-~~Fg~a~~t~~~~~~-f~~~~~dGILGLg~~~~s~~~~ 259 (451)
T 3qvc_A 194 ------TPVKLTSKAGT-ISGIFSKDLVTIGKL-----SVP-YKFIEMTEIVGFEPF-YSESDVDGVFGLGWKDLSIGSI 259 (451)
T ss_dssp ------EEEEEECSSEE-EEEEEEEEEEEETTE-----EEE-EEEEEEEEEEECTTH-HHHSCCCEEEECSSBCSSSSCC
T ss_pred ------CEEEEEECCCE-EEEEEEEEEEEECCE-----EEE-EEEEEEEeccccCCC-ccCCCCCEEEecCCCcccccCC
Confidence 89999999999 569999999999987 888 99999998 655 5 4578999999997654
Q ss_pred ------hHHhhhhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 232 ------LISQMKTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 232 ------l~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
+.+| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. .++|.|.++ |+|+++ .
T Consensus 260 ~~~~~~L~~q-g~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~-l~~~pv~~---~~~w~v~l~-I~Vgg~-~---- 328 (451)
T 3qvc_A 260 DPYIVELKTQ-NKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGP-LNYEKLNH---DLMWQVDLD-VHFGNV-S---- 328 (451)
T ss_dssp CCHHHHHHHT-TSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEE-EEEEECSS---TTSSEEEEE-EEETTE-E----
T ss_pred CCHHHHHHHc-CCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCc-eEEEEccc---CCeeEEEEE-EEECCc-c----
Confidence 3444 56789999999998753 9999999 5667776 99999986 789999999 999998 2
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS 381 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~ 381 (427)
.....++|||||+++++|++++++|.+++.+..... ...+..+|. . ..+|+|+|+|+|.+++||+++|+++..
T Consensus 329 --~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~~-~g~y~v~C~-~---~~~P~itf~fgg~~i~lp~~~yi~~~~ 401 (451)
T 3qvc_A 329 --SKKANVILDSATSVITVPTEFFNQFVESASVFKVPF-LSLYVTTCG-N---TKLPTLEYRSPNKVYTLEPKQYLEPLE 401 (451)
T ss_dssp --EEEEEEEECTTBSSEEECHHHHHHHHTTTTCEECTT-SSCEEEETT-C---TTCCCEEEEETTEEEEECHHHHEEECT
T ss_pred --CCCceEEEeCCCccccCCHHHHHHHHHHcCCeecCC-CCeEEeeCC-c---CcCCcEEEEECCEEEEEcHHHheeecc
Confidence 226789999999999999999999999987654321 224667898 3 378999999999999999999999865
Q ss_pred --CCeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 382 --EDLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 382 --~~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
++..|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 402 NIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp TTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred cCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 2468987 88764 579999999999999999999999999975
|
| >1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-57 Score=435.06 Aligned_cols=299 Identities=17% Similarity=0.249 Sum_probs=253.3
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
++.+..+.+|+++|+|| +|++.|+|||||+++||+|..|....|....++.|||++| |++...
T Consensus 10 ~l~n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~~-------------- 72 (330)
T 1yg9_A 10 LVHVFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISDG-------------- 72 (330)
T ss_dssp CEEEEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEEE--------------
T ss_pred eeecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEECC--------------
Confidence 44456789999999999 9999999999999999999999755785457789999999 999876
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-CCCCceEeecCCCCCh-------hH
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDAS-------LI 233 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s-------l~ 233 (427)
+.|++.|++|+. .|.+++|+|+|++. .++++.|||+......| ....+||||||++.++ ++
T Consensus 73 -----~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~~~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~ 141 (330)
T 1yg9_A 73 -----NVQVKFFDTGSA-VGRGIEDSLTISQL-----TTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALKGKTVL 141 (330)
T ss_dssp -----EEEEEETTTEEE-EEEEEEEEEEETTE-----EEEEEEEEEEEEECTHHHHTTCSEEEECSCTTSCCTTSCCCHH
T ss_pred -----CEEEEEECCceE-EEEEEEEEEEECCE-----EEcCeEEEEEEEcccccccccCceEEEcCcchhccccCCCCHH
Confidence 899999999988 69999999999986 89999999999884344 4678999999998776 33
Q ss_pred Hhh---hhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 234 SQM---KTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 234 ~ql---~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
++| +.+ +++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. .++|.|++++|+|+++.+. .
T Consensus 142 ~~l~~qg~i-~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~~~~~~-----~ 211 (330)
T 1yg9_A 142 ENFVEENLI-APVFSIHHARFQDGEHFGEIIFGGSDWKYVDGE-FTYVPLVG---DDSWKFRLDGVKIGDTTVA-----P 211 (330)
T ss_dssp HHHHHTTSS-CSEEEEEEEECTTSCEEEEEEETSCCGGGEEEE-EEEEEBSC---TTSCCEECSEEEETTEEEE-----C
T ss_pred HHHHhcCCC-CceEEEEEcCCCCCCCCCEEEECCcCHHHccCc-eEEEECCC---CCEEEEEeCeEEECCEEEc-----C
Confidence 333 557 999999999862 39999999 4567776 99999985 7899999999999998765 2
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCC-CcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCC
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP-YDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED 383 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~-~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~ 383 (427)
.+..+||||||+++++|++++++|++++.+.........+ ..+|+... .+|+|+|+|+|.+++|++++|+++. +
T Consensus 212 ~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~g~~~~~~~~C~~~~---~~p~i~f~fgg~~~~l~~~~y~~~~--~ 286 (330)
T 1yg9_A 212 AGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIP---SLPDVTFVINGRNFNISSQYYIQQN--G 286 (330)
T ss_dssp TTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEECSSCEEEEECGGGGG---GSCCEEEEETTEEEEECHHHHEEEE--T
T ss_pred CCcEEEEecCCccccCCHHHHHHHHHHhCCcccCCCceEEEEEECCCcc---ccCcEEEEECCEEEEECHHHhcccC--C
Confidence 3688999999999999999999999999765322110024 56798643 6899999999999999999999987 4
Q ss_pred eEEEE-EEeC--CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 384 LVCSV-FNAR--DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 384 ~~C~~-i~~~--~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
..|++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 287 ~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 287 NLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp TEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 58997 8764 3689999999999999999999999999975
|
| >1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-57 Score=434.08 Aligned_cols=301 Identities=21% Similarity=0.357 Sum_probs=252.0
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.......+.+|+++|+|| +|++.|+|||||+++||+|.+|. .|..+.++.|||++|+ ++...
T Consensus 6 ~~~~~~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~--~~~c~~~~~y~~~~Ss-~~~~~------------- 67 (325)
T 1ibq_A 6 VTTPQNNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELP--SSEQTGHDLYTPSSSA-TKLSG------------- 67 (325)
T ss_dssp EEEECTTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSC--HHHHTTSCCCBCCSSC-EECTT-------------
T ss_pred EeEEcCCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCC--ccccCCCCCCCchhcC-CccCC-------------
Confidence 334455789999999999 99999999999999999999998 6665788999999998 54322
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh-------
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------- 231 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+....+.+ ....+||||||++.++
T Consensus 68 ------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~ 136 (325)
T 1ibq_A 68 ------YSWDISYGDGSSASGDVYRDTVTVGGV-----TTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQ 136 (325)
T ss_dssp ------CBEEEECSSSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCC
T ss_pred ------CEEEEEeCCCCEEEEEEEEeEEEECCE-----EEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCC
Confidence 899999999997779999999999986 89999999999877644 2578999999997654
Q ss_pred --hHHhhhh-hccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 232 --LISQMKT-TIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 232 --l~~ql~~-i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
+++||.. +.+++||+||.+...|+|+||| .+++.|+ +.|+|+... .++|.|++++|+|+++.+. ...
T Consensus 137 ~~~~~~l~~~i~~~~FS~~l~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~w~v~l~~i~v~~~~~~-----~~~ 208 (325)
T 1ibq_A 137 TTFFDTVKSQLDSPLFAVQLKHDAPGVYDFGYIDDSKYTGS-ITYTDADSS--QGYWGFSTDGYSIGDGSSS-----SSG 208 (325)
T ss_dssp CCHHHHHGGGSSSSEEEEEEETTEEEEEEESSCCGGGBSSC-CEEEECBCT--TSSCEEEECEEEETTSCCB-----SCC
T ss_pred CCHHHHHHHhcCCcEEEEEecCCCCceEEECCcChhhccCc-eEEEEcCCC--CceEEEEECcEEECCeecc-----CCC
Confidence 4566543 6789999999985449999999 4577777 999999843 6799999999999998664 236
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--Ce
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DL 384 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~ 384 (427)
..+||||||+++++|++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|++...+ ..
T Consensus 209 ~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~~~~~g~~~~~C~-----~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~ 283 (325)
T 1ibq_A 209 FSAIADTGTTLILLDDEIVSAYYEQVSGAQESYEAGGYVFSCS-----TDLPDFTVVIGDYKAVVPGKYINYAPVSTGSS 283 (325)
T ss_dssp EEEEECTTCCSEEECHHHHHHHHTTSTTCBCCSSSSSCEEETT-----CCCCCEEEEETTEEEEECHHHHEEEESSTTCS
T ss_pred ceEEEeCCCCcEeCCHHHHHHHHHhCCCceEcCcCCeEEEEcC-----CCCCcEEEEECCEEEEECHHHhcccccCCCCC
Confidence 7899999999999999999999999854432222224566798 2689999999999999999999987633 36
Q ss_pred EEEE-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 385 VCSV-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 385 ~C~~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
.|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 284 ~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 284 TCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp EEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred eEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 8998 87754 689999999999999999999999999874
|
| >1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-57 Score=433.67 Aligned_cols=300 Identities=19% Similarity=0.320 Sum_probs=251.0
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.......+.+|+++|+|| ||++.|+|||||+++||+|.+|. .|..+.++.|||++|+ ++...
T Consensus 7 ~~~~~~~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~--~~~c~~~~~y~~~~Ss-~~~~~------------- 68 (323)
T 1izd_A 7 TTNPTSNDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTP--SSERSGHDYYTPGSSA-QKIDG------------- 68 (323)
T ss_dssp EEEECGGGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSC--HHHHTTCCCBCCCTTC-EEEEE-------------
T ss_pred eeeEcCCCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCC--cccccCCCCCCccccC-CccCC-------------
Confidence 333345788999999999 89999999999999999999998 6655788999999999 66443
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh-------
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------- 231 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+.+ ....+||||||++.++
T Consensus 69 ------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~ 137 (323)
T 1izd_A 69 ------ATWSISYGDGSSASGDVYKDKVTVGGV-----SYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQ 137 (323)
T ss_dssp ------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCC
T ss_pred ------CeEEEEcCCCCeEEEEEEEEEEEECCE-----EECceEEEEEEeccccccccCCCceEEecCcccccccCCCCC
Confidence 899999999997779999999999986 89999999999877644 3678999999997654
Q ss_pred --hHHhhh-hhccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 232 --LISQMK-TTIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 232 --l~~ql~-~i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
++++|. .+.+++||+||.+...|+|+||| ++++.|+ +.|+|+... .++|.|++++|+|++ .+. ...
T Consensus 138 ~~~~~~l~~~i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~w~v~l~~i~v~~-~~~-----~~~ 208 (323)
T 1izd_A 138 KTFFDNVKSSLSEPIFAVALKHNAPGVYDFGYTDSSKYTGS-ITYTDVDNS--QGFWGFTADGYSIGS-DSS-----SDS 208 (323)
T ss_dssp CCHHHHHGGGSSSSEEEEECCTTSCEEEEESSCCTTSEEEE-EEEEECBCT--TSSCEEEESEEEETT-EEE-----CCC
T ss_pred CCHHHHHHHhccCcEEEEEccCCCCCEEEECCcCccccccc-eEEEECCCC--CceEEEEECeEEECC-ccc-----CCC
Confidence 345543 35789999999986559999999 5567776 999999842 679999999999999 543 346
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEE
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVC 386 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C 386 (427)
..+||||||+++++|++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|+++..++..|
T Consensus 209 ~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~~~~~~g~~~~~C~-----~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C 283 (323)
T 1izd_A 209 ITGIADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSS-----ASLPDFSVTIGDYTATVPGEYISFADVGNGQT 283 (323)
T ss_dssp EEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETT-----CCCCCEEEEETTEEEEECHHHHEEEECSTTEE
T ss_pred ceEEEeCCCcceeCCHHHHHHHHHhCCCcEEcCcCCEEEEECC-----CCCceEEEEECCEEEecCHHHeEEecCCCCeE
Confidence 7899999999999999999999999854332222223556798 26899999999999999999999887556789
Q ss_pred EE-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 387 SV-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 387 ~~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
++ |++.+ +.||||++|||++|+|||++++|||||++.
T Consensus 284 ~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 284 FGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp EESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 98 88754 689999999999999999999999999863
|
| >1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-57 Score=432.78 Aligned_cols=300 Identities=21% Similarity=0.375 Sum_probs=250.1
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
+.......+.+|+++|+|| +|++.|+|||||+++||+|.+|. .|..+.++.|||++|+ ++...
T Consensus 6 v~~~~~~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~--~~~c~~~~~y~~~~Ss-~~~~~------------ 68 (323)
T 1bxo_A 6 ATNTPTANDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELP--ASQQSGHSVYNPSATG-KELSG------------ 68 (323)
T ss_dssp EEEEECGGGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSC--HHHHTTSCCBCHHHHC-EEEEE------------
T ss_pred eeeeecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCC--chhccCCCCCCcccCC-cccCC------------
Confidence 3334445788999999999 99999999999999999999998 6665788999999998 66544
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh------
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------ 231 (427)
|.|++.|++|+.+.|.+++|+|+|++. .++++.|||++...+.+ ....+||||||++.++
T Consensus 69 -------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~ 136 (323)
T 1bxo_A 69 -------YTWSISYGDGSSASGNVFTDSVTVGGV-----TAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQS 136 (323)
T ss_dssp -------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSC
T ss_pred -------CeEEEEeCCCCeEEEEEEEEEEEECCE-----EECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCC
Confidence 899999999997779999999999986 89999999999876644 3578999999997544
Q ss_pred ---hHHhhh-hhccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCC
Q 040562 232 ---LISQMK-TTIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305 (427)
Q Consensus 232 ---l~~ql~-~i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 305 (427)
++++|. .+.+++||+||.+...|+|+||| ++++.|+ +.|+|+... .++|.|++++|+|++ . . ..
T Consensus 137 ~~~~~~~l~~~i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~w~v~l~~i~v~~-~-~-----~~ 206 (323)
T 1bxo_A 137 QTTFFDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGS-LTYTGVDNS--QGFWSFNVDSYTAGS-Q-S-----GD 206 (323)
T ss_dssp CCCHHHHHGGGBSSSEEEEECCSSSCEEEEESSCCGGGBSSC-CEEEECBCT--TSSCEEEEEEEEETT-E-E-----EE
T ss_pred CCCHHHHHHHhcCCcEEEEEEeCCCCceEEEeCcChhhccCc-eEEEECCCC--CCeEEEEEeeEEECC-c-c-----CC
Confidence 445543 36789999999886559999999 4567777 999999853 679999999999998 2 2 12
Q ss_pred CCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC-Ce
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE-DL 384 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~-~~ 384 (427)
...+||||||+++++|++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|+++..+ ..
T Consensus 207 ~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~-----~~~P~i~f~fgg~~~~l~~~~~~~~~~~~~~ 281 (323)
T 1bxo_A 207 GFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCS-----TNLPDFSVSISGYTATVPGSLINYGPSGDGS 281 (323)
T ss_dssp EEEEEECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEEECTT-----CCCCCEEEEETTEEEEECHHHHEEEECSSSS
T ss_pred CceEEEeCCCCceeCCHHHHHHHHHhCCCceEcCcCCEEEEECC-----CCCceEEEEECCEEEEECHHHeEEeccCCCC
Confidence 67899999999999999999999999854432222223556798 2689999999999999999999987643 36
Q ss_pred EEEE-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 385 VCSV-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 385 ~C~~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
.|++ |++.+ +.||||++|||++|+|||++++|||||++.
T Consensus 282 ~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 282 TCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp CEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred eEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 8998 88753 689999999999999999999999999874
|
| >2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=431.84 Aligned_cols=309 Identities=21% Similarity=0.348 Sum_probs=250.2
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
.+....+..|+++|+||||+|++.|+|||||+++||+|.+|. .| ++.|||++|+||+...
T Consensus 6 ~l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~--~~----~~~f~~~~SsT~~~~~-------------- 65 (383)
T 2ewy_A 6 NLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHS--YI----DTYFDTERSSTYRSKG-------------- 65 (383)
T ss_dssp CEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBT--TB----SCCCCGGGCTTCEEEE--------------
T ss_pred eccCCCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCC--cc----ccCcccccCccceeCC--------------
Confidence 344445678999999999999999999999999999999887 45 5789999999999986
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceec-CcEEEEeEeecCCCC--CCCCceEeecCCCCC--------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVAL-PEIVFGCGTKNGGKF--NSKTDGIVGLGGGDA-------- 230 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~-~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~-------- 230 (427)
|.|.+.|++|+. .|.+++|+|+|++.. .. ..+.|++.....+.| ....+||||||++.+
T Consensus 66 -----~~~~i~Yg~Gs~-~G~~~~Dtv~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~ 135 (383)
T 2ewy_A 66 -----FDVTVKYTQGSW-TGFVGEDLVTIPKGF----NTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLE 135 (383)
T ss_dssp -----EEEEEECSSCEE-EEEEEEEEEEETTTE----EEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSC
T ss_pred -----ceEEEEECCcEE-EEEEEEEEEEECCCc----cceeEEEEEEEEeecceeeccCcCceEEecCchhccccccccc
Confidence 899999999987 599999999998641 11 135688876655544 356899999999765
Q ss_pred ----hhHHhhhhhccCceEEEeecC---------CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecce
Q 040562 231 ----SLISQMKTTIAGKFSYCLVQQ---------SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQ 295 (427)
Q Consensus 231 ----sl~~ql~~i~~~~Fs~~l~~~---------~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~ 295 (427)
++++| +.+ +++||+||.+. ..|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++
T Consensus 136 ~~~~~l~~q-~~i-~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~g~ 209 (383)
T 2ewy_A 136 TFFDSLVTQ-ANI-PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGD-IWYTPIKE---EWYYQIEILKLEIGGQ 209 (383)
T ss_dssp CHHHHHHHH-HTC-CSCEEEEECCC---------CCEEEEETSCCGGGCCSC-EEEEECSS---BTTBBCCEEEEEETTE
T ss_pred CHHHHHHHc-cCC-CcceEEEeeccccccccCCCCCeEEEeCccchhhccCc-cEEEecCC---CceEEEEEEEEEECCE
Confidence 35666 455 78999999631 229999999 4567776 99999986 6799999999999999
Q ss_pred EeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeCc-
Q 040562 296 RLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRDA- 367 (427)
Q Consensus 296 ~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g~- 367 (427)
.+..+........+||||||+++++|++++++|++++.+........ .+..+|+..... ..+|+|+|+|+|.
T Consensus 210 ~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~ 289 (383)
T 2ewy_A 210 SLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDEN 289 (383)
T ss_dssp ECCCCTTTTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSS
T ss_pred EccccccccCCccEEEEcCCccccCCHHHHHHHHHHHhhhcccccCccccccccccccccCCcccHhhCCcEEEEECCCC
Confidence 88754321224689999999999999999999999999876532211 246789975321 2589999999984
Q ss_pred -----EEEecCCceEEEeC---CCeEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 368 -----DVKLSTSNVFMNIS---EDLVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 368 -----~~~l~~~~y~~~~~---~~~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+++|++++|+++.. .+..|++ +.+.++.||||++|||++|+|||++++|||||+++|+.
T Consensus 290 ~~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 358 (383)
T 2ewy_A 290 SSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAE 358 (383)
T ss_dssp TTEEEEEEECHHHHEEEECCCTTCSEEEEESEEEESSCEEECHHHHTTEEEEEETTTTEEEEEECTTCB
T ss_pred CCceEEEEEChHHheeecccCCCCceeEEEEecCCCCcEEEChHHhCCeeEEEECCCCeEEEEeccCCC
Confidence 79999999998864 3568985 56555789999999999999999999999999999963
|
| >2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-55 Score=430.91 Aligned_cols=306 Identities=20% Similarity=0.336 Sum_probs=248.1
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
....+.+|+++|+||||+|++.|+|||||+++||+|.+|. . .++.|||++|+||+...
T Consensus 16 ~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~--~----~~~~y~~~~SsT~~~~~---------------- 73 (395)
T 2qp8_A 16 RGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP--F----LHRYYQRQLSSTYRDLR---------------- 73 (395)
T ss_dssp EEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCT--T----CSCCCCGGGCTTCEEEE----------------
T ss_pred CCCCCceEEEEEEecCCCceEEEEEecCCCceEEECCCCc--c----ccCCcCcccCCCceeCC----------------
Confidence 3445778999999999999999999999999999999886 3 46889999999999986
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcC-CCCCceecC-cEEEEeEeecCCCC--CCCCceEeecCCCCC---------
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGS-TSGQAVALP-EIVFGCGTKNGGKF--NSKTDGIVGLGGGDA--------- 230 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~-~~~~~~~~~-~~~fg~~~~~~~~~--~~~~~GilGLg~~~~--------- 230 (427)
|.|.+.|++|+. .|.+++|+|+|++ . .+. .+.|++.....+.| ....+||||||++.+
T Consensus 74 ---~~~~i~Yg~Gs~-~G~~~~Dtv~ig~g~-----~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~ 144 (395)
T 2qp8_A 74 ---KGVYVPYTQGKW-EGELGTDLVSIPHGP-----NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEP 144 (395)
T ss_dssp ---EEEEEECSSCEE-EEEEEEEEEECTTSC-----SCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCC
T ss_pred ---ceEEEEECCcEE-EEEEEeEEEEECCCC-----CceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCC
Confidence 899999999987 5999999999984 3 232 36688777655544 357899999999765
Q ss_pred ---hhHHhhhhhccCceEEEeecC------------CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEec
Q 040562 231 ---SLISQMKTTIAGKFSYCLVQQ------------SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVG 293 (427)
Q Consensus 231 ---sl~~ql~~i~~~~Fs~~l~~~------------~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~ 293 (427)
+|.+| +.+. ++||+||.+. ..|+|+||| .+++.|+ +.|+|+.. ..+|.|.|++|+|+
T Consensus 145 ~~~~l~~q-~~i~-~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~ 218 (395)
T 2qp8_A 145 FFDSLVKQ-THVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS-LWYTPIRR---EWYYEVIIVRVEIN 218 (395)
T ss_dssp HHHHHHHH-SCCC-SCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEE-EEEEECCS---BTTBBCCEEEEEET
T ss_pred HHHHHHHc-cCCc-ceEEEEeccccccccccccccCCCcEEEECCcCcccccCc-eEEeccCC---CceEEEEEEEEEEC
Confidence 24555 4454 8999999752 239999999 4567776 99999986 67999999999999
Q ss_pred ceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeC
Q 040562 294 DQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRD 366 (427)
Q Consensus 294 ~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g 366 (427)
++.+..+........+||||||+++++|++++++|++++.+........ .+..+|+..... ..+|+|+|+|+|
T Consensus 219 g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g 298 (395)
T 2qp8_A 219 GQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMG 298 (395)
T ss_dssp TEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEEC
T ss_pred CEEcccCccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCccccccccccccccccchHhhCCcEEEEEcc
Confidence 9987653321124689999999999999999999999999876433211 235789975321 258999999998
Q ss_pred c------EEEecCCceEEEeCC----CeEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 367 A------DVKLSTSNVFMNISE----DLVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 367 ~------~~~l~~~~y~~~~~~----~~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
. +++|++++|+++..+ ...|++ +.+.++.||||++|||++|+|||++++|||||+++|+.
T Consensus 299 ~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 370 (395)
T 2qp8_A 299 EVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 370 (395)
T ss_dssp SSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCC
T ss_pred CCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCCCCcEEEChHHhCCeeEEEECCCCEEEEEeccCCC
Confidence 5 699999999998643 358974 66655789999999999999999999999999999974
|
| >3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-55 Score=438.67 Aligned_cols=307 Identities=19% Similarity=0.325 Sum_probs=249.9
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCC
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAE 164 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~ 164 (427)
...+.+|+++|+||||+|+|+|+|||||+++||+|.+| | ..++.|||++|+||+...
T Consensus 70 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c----c--~~~~~y~~~~SsT~~~~~----------------- 126 (455)
T 3lpj_A 70 GKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH----P--FLHRYYQRQLSSTYRDLR----------------- 126 (455)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC----T--TCSCCCCGGGCTTCEEEE-----------------
T ss_pred CCCCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc----c--ccCCcccCCCCCCcccCC-----------------
Confidence 34567899999999999999999999999999999977 4 467899999999999986
Q ss_pred CCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh-----------
Q 040562 165 GNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS----------- 231 (427)
Q Consensus 165 ~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s----------- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++... +.+ .+.|+++......| ....+||||||++.++
T Consensus 127 --~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~~~--~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~ 200 (455)
T 3lpj_A 127 --KGVYVPYTQGKW-EGELGTDLVSIPHGPN--VTV-RANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFD 200 (455)
T ss_dssp --EEEEEECSSCEE-EEEEEEEEEECTTSCS--CEE-EEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHH
T ss_pred --ccEEEEeCCeEE-EEEEEEEEEEECCCcc--eee-EEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHH
Confidence 899999999998 5999999999985310 122 35788888776655 3678999999997643
Q ss_pred -hHHhhhhhccCceEEEeecC------------CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceE
Q 040562 232 -LISQMKTTIAGKFSYCLVQQ------------SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQR 296 (427)
Q Consensus 232 -l~~ql~~i~~~~Fs~~l~~~------------~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~ 296 (427)
|.+| +.+. ++||+||.+. ..|+|+||| ..++.|+ +.|+|+.. ..+|.|.+++|+|+++.
T Consensus 201 ~L~~q-~~i~-~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~g~~ 274 (455)
T 3lpj_A 201 SLVKQ-THVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS-LWYTPIRR---EWYYEVIIVRVEINGQD 274 (455)
T ss_dssp HHHHH-SCCC-SCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEE-EEEEECCS---BTTBBCCEEEEEETTEE
T ss_pred HHHHc-cCCC-ceeEEEeccccccccccccccCCCceEEECCcCcccccCc-eEEEecCC---CceeEEEEeEEEECCEE
Confidence 3444 4454 8999999742 239999999 5667776 99999986 68999999999999998
Q ss_pred eeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeCc--
Q 040562 297 LGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRDA-- 367 (427)
Q Consensus 297 ~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g~-- 367 (427)
+...........+||||||++++||++++++|++++.+........ .+.++|+..... ..+|+|+|+|+|.
T Consensus 275 ~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~ 354 (455)
T 3lpj_A 275 LKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVT 354 (455)
T ss_dssp CCCCGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSST
T ss_pred ccccccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccCCchhcCCcEEEEEcCCCc
Confidence 8764321135789999999999999999999999999986432211 346789976421 1489999999986
Q ss_pred ----EEEecCCceEEEeCCC----eEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 368 ----DVKLSTSNVFMNISED----LVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 368 ----~~~l~~~~y~~~~~~~----~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+++|++++|+++..+. ..|++ +.+.++.||||++|||++|+|||++++|||||+++|+.
T Consensus 355 ~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 423 (455)
T 3lpj_A 355 NQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 423 (455)
T ss_dssp TEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCC
T ss_pred CceEEEEECHHHheEeccCCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCEEEEEeccccc
Confidence 4999999999987542 58986 44445789999999999999999999999999999975
|
| >3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-54 Score=427.02 Aligned_cols=305 Identities=19% Similarity=0.335 Sum_probs=246.7
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCC
Q 040562 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGN 166 (427)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~ 166 (427)
.+.+|+++|+||||||+++|+|||||+++||+|.+|. ..++.|||++|+||+...
T Consensus 26 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~------~~~~~y~~~~SsT~~~~~------------------- 80 (402)
T 3vf3_A 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP------FLHRYYQRQLSSTYRDLR------------------- 80 (402)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCT------TCSCCCCGGGCTTCEEEE-------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCCC------cccCCcCcccCcccccCC-------------------
Confidence 4568999999999999999999999999999999873 467899999999999986
Q ss_pred ceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecC-cEEEEeEeecCCCC--CCCCceEeecCCCCCh--------hHHh
Q 040562 167 CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALP-EIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS--------LISQ 235 (427)
Q Consensus 167 ~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~-~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s--------l~~q 235 (427)
|.|.+.|++|+. .|.+++|+|+|++.. .+. .+.|+++....+.+ ....+||||||++.++ ++.+
T Consensus 81 ~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~----~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~ 155 (402)
T 3vf3_A 81 KGVYVPYTQGKW-EGELGTDLVSIPHGP----NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDS 155 (402)
T ss_dssp EEEEEECSSCEE-EEEEEEEEEECTTSC----SCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred CEEEEEECcEEE-EEEEEEEEEEECCcc----ccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHH
Confidence 899999999997 599999999998531 233 24578877766544 3578999999997543 3333
Q ss_pred h---hhhccCceEEEeecC------------CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 236 M---KTTIAGKFSYCLVQQ------------SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 236 l---~~i~~~~Fs~~l~~~------------~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
| +.+. ++||+||.+. ..|+|+||| ..++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.
T Consensus 156 L~~q~~i~-~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~g~~~~ 230 (402)
T 3vf3_A 156 LVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS-LWYTPIRR---EWYYEVIIVRVEINGQDLK 230 (402)
T ss_dssp HHHHSCCC-SCEEEEECCCC-------------EEEEESSCCGGGEEEE-EEEEECSS---BTTBEECEEEEEETTEECC
T ss_pred HHHccCCc-cceEEEeecccccccccccccCCCCEEEeCCcCcccccCc-eEEEeCCc---CcEEEEEEeEEEECCEEec
Confidence 3 4454 8999999642 129999999 5567776 99999986 6899999999999999887
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeCc----
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRDA---- 367 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g~---- 367 (427)
..........+||||||++++||++++++|++++.+........ .+.++|+..... ..+|+|+|+|+|.
T Consensus 231 ~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~ 310 (402)
T 3vf3_A 231 MDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ 310 (402)
T ss_dssp CCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTE
T ss_pred ccccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCceEEEEecCCCCc
Confidence 64321135689999999999999999999999999886422111 346789976321 2589999999986
Q ss_pred --EEEecCCceEEEeCCC----eEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 368 --DVKLSTSNVFMNISED----LVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 368 --~~~l~~~~y~~~~~~~----~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+++|++++|+++..+. ..|++ +.+.++.||||++|||++|+|||++++|||||+++|+.
T Consensus 311 ~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 377 (402)
T 3vf3_A 311 SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 377 (402)
T ss_dssp EEEEEECHHHHEEECCCGGGTTEEEEEECEEEESSCEEECHHHHTTEEEEEEGGGTEEEEEEETTCC
T ss_pred eEEEEECHHHheehhccCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCEEEEEecccCc
Confidence 4999999999987542 58986 44445789999999999999999999999999999985
|
| >1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=425.38 Aligned_cols=314 Identities=21% Similarity=0.417 Sum_probs=241.5
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-C--CCCCC
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-P--IKDSC 161 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~--~~~~c 161 (427)
+..+.+|+++|+|||| |+|||||+++||+|.+|. +++.++|.++.|.. + ....|
T Consensus 10 ~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~------------------~~~~~~C~s~~C~~~~~~~~~sc 66 (381)
T 1t6e_X 10 DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ------------------PPAEIPCSSPTCLLANAYPAPGC 66 (381)
T ss_dssp CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC------------------CCCCCBTTSHHHHHHHSSCCTTC
T ss_pred cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC------------------CCCccCCCCchhccccCCCCCCC
Confidence 4678899999999997 999999999999987553 12334444444432 1 01123
Q ss_pred CC--------CCCc-eeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcE----EEEeEeecCC-CCCCCCceEeecCC
Q 040562 162 SA--------EGNC-RYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEI----VFGCGTKNGG-KFNSKTDGIVGLGG 227 (427)
Q Consensus 162 ~~--------~~~~-~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~----~fg~~~~~~~-~~~~~~~GilGLg~ 227 (427)
.. .+.| .|.+.|++|+.+.|++++|+|+|++.++. +.++++ .|||+..... .+....+||||||+
T Consensus 67 ~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~-~~v~~~~~~~~Fg~~~~~~~~~~~~~~dGIlGLg~ 145 (381)
T 1t6e_X 67 PAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGS-KPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLAN 145 (381)
T ss_dssp CCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSS-SEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSS
T ss_pred CCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCC-ccccceeeeeEeecCcccccCCCCCCCceEEEeCC
Confidence 21 1236 59999999998779999999999863211 255554 6799987632 22367899999999
Q ss_pred CCChhHHhhhh--hccCceEEEeecCCCceeeeCCCC----cccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 228 GDASLISQMKT--TIAGKFSYCLVQQSSTKINFGTNG----IVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 228 ~~~sl~~ql~~--i~~~~Fs~~l~~~~~G~l~fGg~~----~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
+.+++++||.. +.+++||+||.+...|+|+|||.+ ++.|+ +.|+|++.++...+|+|+|++|+|+++.+..+.
T Consensus 146 ~~~s~~~ql~~~~~~~~~FS~~L~~~~~G~l~fGg~~~~~~~~~g~-l~~tPl~~~~~~~~y~v~l~~i~vg~~~~~~~~ 224 (381)
T 1t6e_X 146 SGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQS-MPYTPLVTKGGSPAHYISARSIVVGDTRVPVPE 224 (381)
T ss_dssp STTSHHHHHHHHHTCCSEEEEECCSSSCEEEEESCCSCSCHHHHTT-CCEEECBCCTTCCSCEECEEEEEETTEECCCCT
T ss_pred CcchhHHHHhhhcccCceEEEEeCCCCCeeEEeCCcccccccccCc-ceeeccccCCCCcceEEEEEEEEEcCEEecCCH
Confidence 99999999865 457999999988645999999933 35666 999999976433567799999999999887643
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhcc--------CCC---cCCCcceeccCCC------CccCeEEEEE
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAA--------QPV---EGPYDLCYSISSR------PRFPEVTIHF 364 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~--------~~~---~~~~~~C~~~~~~------~~~P~i~~~f 364 (427)
..-..+++||||||++++||+++|++|.+++.+++.. ... ...+++|++.+.. ..+|+|+|+|
T Consensus 225 ~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f 304 (381)
T 1t6e_X 225 GALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGL 304 (381)
T ss_dssp TCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEE
T ss_pred HHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccccCCcCCeEEEEE
Confidence 2111467999999999999999999999999887641 111 1355789976421 2689999999
Q ss_pred eC-cEEEecCCceEEEeCCCeEEEEEEeCC---------CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 365 RD-ADVKLSTSNVFMNISEDLVCSVFNARD---------DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 365 ~g-~~~~l~~~~y~~~~~~~~~C~~i~~~~---------~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+| ++++|++++|+++..++..|++|++.+ +.||||+.|||++|+|||++++|||||+++
T Consensus 305 ~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~ 373 (381)
T 1t6e_X 305 DGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP 373 (381)
T ss_dssp TTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred CCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence 85 999999999999876678999987653 479999999999999999999999999865
|
| >1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-54 Score=417.68 Aligned_cols=292 Identities=19% Similarity=0.331 Sum_probs=239.4
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
.++...+.+|+++|.||||+|++.|+|||||+++||+|. +.|+|++|+++..
T Consensus 5 ~~l~n~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~------------~~y~~s~Ss~~~~---------------- 56 (340)
T 1wkr_A 5 VPATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD------------KSYVKTSTSSATS---------------- 56 (340)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEEEETTCCCCEECSS------------SCCCCCTTCEEEE----------------
T ss_pred EeeeccCcEEEEEEEECCCCcEEEEEEeCCChhheecCC------------CccCCcCCccccC----------------
Confidence 344455779999999999999999999999999999642 4799998886654
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChh---------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASL--------- 232 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl--------- 232 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+ | ...+||||||++.+++
T Consensus 57 -----~~~~i~Yg~Gs~-~G~~~~Dtv~~g~~-----~v~~~~fg~~~~~~~-~-~~~~GilGLg~~~~s~~~~~~~~~~ 123 (340)
T 1wkr_A 57 -----DKVSVTYGSGSF-SGTEYTDTVTLGSL-----TIPKQSIGVASRDSG-F-DGVDGILGVGPVDLTVGTLSPHTST 123 (340)
T ss_dssp -----EEEEEECSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEEEEEES-C-TTCSEEEECSCGGGGTTSEESCTTC
T ss_pred -----ceEEEEECCcEE-EEEEEEEEEEECCE-----EEcceEEEEEEccCC-C-cCCCcEEECCccccccccccccccc
Confidence 899999999984 59999999999986 899999999998755 4 4689999999976543
Q ss_pred -----HHhh---hhhccCceEEEeecCC-----CceeeeCC--CCcccCCCeeeeccccCCC-CccEEEEeeEEEecc-e
Q 040562 233 -----ISQM---KTTIAGKFSYCLVQQS-----STKINFGT--NGIVSGSGVVSTPLLAKNP-KTFYSLTLDAISVGD-Q 295 (427)
Q Consensus 233 -----~~ql---~~i~~~~Fs~~l~~~~-----~G~l~fGg--~~~~~g~~~~~~p~~~~~~-~~~w~v~l~~i~v~~-~ 295 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+...+. ..+|.|. ++|+|++ +
T Consensus 124 ~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~~~~~~~w~v~-~~i~v~~~~ 201 (340)
T 1wkr_A 124 SIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGS-ITYTPITSTSPASAYWGIN-QSIRYGSST 201 (340)
T ss_dssp CCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSC-CEEEECCSSTTGGGSSEEE-EEEEETTTE
T ss_pred cCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccc-eEEEECccCCCCcceEEEE-eeEEECCCe
Confidence 3333 4567899999998641 29999999 4567776 99999997543 6799999 9999998 7
Q ss_pred EeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCc
Q 040562 296 RLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSN 375 (427)
Q Consensus 296 ~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~ 375 (427)
.+.. ...+||||||++++||++++++|.+++.+....... .+..+|.... .+|+|+|+|+|.+++|++++
T Consensus 202 ~l~~------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~~~~g-~~~~~C~~~~---~~p~i~f~f~g~~~~i~~~~ 271 (340)
T 1wkr_A 202 SILS------STAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTG-LLRLTTAQYA---NLQSLFFTIGGQTFELTANA 271 (340)
T ss_dssp EEEE------EEEEEECTTBCSEEECHHHHHHHHHHHTCEECTTTS-SEEECHHHHH---TCCCEEEEETTEEEEECTGG
T ss_pred EccC------CCeEEEeCCcccccCCHHHHHHHHHhhCCEEcCCCC-eEEeeccccc---cCCcEEEEECCEEEEEcHHH
Confidence 7753 458999999999999999999998888765432222 4567798543 67999999999999999999
Q ss_pred eEEEeC-------CCeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 376 VFMNIS-------EDLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 376 y~~~~~-------~~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
|+++.. +...|+. |.+. +..||||++|||++|+|||++++|||||+++|++
T Consensus 272 yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 336 (340)
T 1wkr_A 272 QIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFTT 336 (340)
T ss_dssp GBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTTT
T ss_pred hccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCCC
Confidence 998753 1246765 7652 1469999999999999999999999999999975
|
| >1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=328.13 Aligned_cols=219 Identities=26% Similarity=0.444 Sum_probs=188.0
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP-PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
.++.+..+.+|+++|.||||+|++.|+|||||+++||+|..|. +..|. .++.|||++|+|++...
T Consensus 5 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------ 70 (239)
T 1b5f_A 5 VALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACR--AHSMYESSDSSTYKENG------------ 70 (239)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHH--TSCCBCGGGCTTCEEEE------------
T ss_pred eeeeecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccC--CCCCCCCccCCCeeeCC------------
Confidence 3455678899999999999999999999999999999999996 33574 57899999999999976
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------ 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ....+||||||++.++
T Consensus 71 -------~~~~i~Yg~Gs~-~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~p~~~~ 137 (239)
T 1b5f_A 71 -------TFGAIIYGTGSI-TGFFSQDSVTIGDL-----VVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISVPVWYN 137 (239)
T ss_dssp -------EEEEEECSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSSCCHHHH
T ss_pred -------cEEEEEECCCcE-EEEEEEEEEEECCc-----EEccEEEEEEEeccCccccccCcceEEecCccccccHHHHH
Confidence 899999999985 59999999999986 899999999998765 34 4678999999999876
Q ss_pred hHHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCC
Q 040562 232 LISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305 (427)
Q Consensus 232 l~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 305 (427)
+++| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. .++|.|.|++|+|+++.+... ..
T Consensus 138 l~~q-g~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~~---~~ 209 (239)
T 1b5f_A 138 MLNQ-GLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGD-HTYVPVTY---QYYWQFGIGDVLIGDKSTGFC---AP 209 (239)
T ss_dssp HHHT-TCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEE-EEEEEEEE---ETTEEEEECCEEETTEECCTT---TT
T ss_pred HHHC-CCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCc-eEEEEccc---CCeEEEEeeEEEECCEEeccc---CC
Confidence 4455 6678899999998752 29999999 4567776 99999986 679999999999999887643 23
Q ss_pred CCcEEEccCCccccccHHHHHHHHHHHHh
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSS 334 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~~~l~~ 334 (427)
...+||||||+++++|++++++|.+++.+
T Consensus 210 ~~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 210 GCQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp CEEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred CCEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 67899999999999999999999998754
|
| >1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=291.30 Aligned_cols=213 Identities=22% Similarity=0.372 Sum_probs=176.9
Q ss_pred eecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hHHhh---hhhccCceEEEeecCC----CceeeeCC--
Q 040562 198 VALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LISQM---KTTIAGKFSYCLVQQS----STKINFGT-- 260 (427)
Q Consensus 198 ~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~~ql---~~i~~~~Fs~~l~~~~----~G~l~fGg-- 260 (427)
++++++.|||++...+ .| ....+||||||++.++ ++++| +.+.+++||+||.+.. .|+|+|||
T Consensus 3 ~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d 82 (241)
T 1lya_B 3 VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTD 82 (241)
T ss_dssp EEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCC
T ss_pred eEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcC
Confidence 4889999999999876 35 5678999999998654 33333 4578899999998863 39999999
Q ss_pred CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCC
Q 040562 261 NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQP 340 (427)
Q Consensus 261 ~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~ 340 (427)
++++.|+ +.|+|+.. ..+|.|++++|+|+++.+.. ..+..+||||||+++++|++++++|.+++.+....
T Consensus 83 ~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~----~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~-- 152 (241)
T 1lya_B 83 SKYYKGS-LSYLNVTR---KAYWQVHLDQVEVASGLTLC----KEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLI-- 152 (241)
T ss_dssp GGGEEEE-EEEEECSS---BTTBEEEEEEEEETTSCEES----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEEE--
T ss_pred HHHcCCc-eEEEECcc---ccEEEEEEeEEEECCeeEec----cCCCEEEEECCCccccCCHHHHHHHHHHhCCeecc--
Confidence 4567776 99999986 78999999999999987532 34678999999999999999999999998765432
Q ss_pred CcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--CeEEEE-EEeC------CCcceechhhhcceEEEEe
Q 040562 341 VEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYD 411 (427)
Q Consensus 341 ~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD 411 (427)
...+..+|+... .+|+|+|+|+|.+++|++++|+++..+ +..|++ |++. ++.||||++|||++|+|||
T Consensus 153 ~g~~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD 229 (241)
T 1lya_B 153 QGEYMIPCEKVS---TLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFD 229 (241)
T ss_dssp TTEEEEEGGGGG---GSCCEEEEETTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEEEE
T ss_pred CCcEEEECCCCc---cCCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEEEE
Confidence 114567898653 689999999999999999999998753 468997 8864 3689999999999999999
Q ss_pred CCCCEEEEeeCC
Q 040562 412 IEGRTVSFKPTD 423 (427)
Q Consensus 412 ~~~~riGfa~~~ 423 (427)
++++|||||+++
T Consensus 230 ~~~~~igfA~~~ 241 (241)
T 1lya_B 230 RDNNRVGFAEAA 241 (241)
T ss_dssp TTTTEEEEEEEC
T ss_pred CCCCEEEEEEcC
Confidence 999999999975
|
| >1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-24 Score=165.30 Aligned_cols=90 Identities=30% Similarity=0.464 Sum_probs=80.2
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
.++.+..+.+|+++|.||||||+|.|+|||||+++||+|.+|.. ..| ..++.|||++|+|++...
T Consensus 5 ~~l~n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C--~~~~~y~p~~SsT~~~~~----------- 71 (97)
T 1lya_A 5 EVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIAC--WIHHKYNSDKSSTYVKNG----------- 71 (97)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHH--HTSCCBCGGGCTTCEEEE-----------
T ss_pred EeeEECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCccccc--CCCCCCCchhCCCceeCC-----------
Confidence 34445788999999999999999999999999999999999972 368 357899999999999986
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcC
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGS 192 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~ 192 (427)
|.|.+.|++|++ .|.+++|+|+|++
T Consensus 72 --------~~~~i~Yg~Gs~-~G~~~~Dtv~i~g 96 (97)
T 1lya_A 72 --------TSFDIHYGSGSL-SGYLSQDTVSVPC 96 (97)
T ss_dssp --------EEEEEECSSCEE-EEEEEEEEEEESC
T ss_pred --------CcEEEEECCcEE-EEEEEEEEEEECC
Confidence 899999999995 5999999999986
|
| >1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-18 Score=129.51 Aligned_cols=77 Identities=16% Similarity=0.326 Sum_probs=66.7
Q ss_pred CCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--CeEEEE-EEeC-----CCcceechhhhcceEEEEeCCCC
Q 040562 344 PYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DLVCSV-FNAR-----DDIPLYGNIMQTNFLIGYDIEGR 415 (427)
Q Consensus 344 ~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~~C~~-i~~~-----~~~~ilG~~fl~~~y~vfD~~~~ 415 (427)
+..+|.... .+|+|+|+|+|.+++|++++|+++... +..|++ |++. ++.||||++|||++|+|||++++
T Consensus 3 y~v~C~~~~---~~P~i~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~ 79 (87)
T 1b5f_B 3 LQVDCNTLS---SMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNL 79 (87)
T ss_dssp CEECGGGGG---GCCCEEEEETTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTT
T ss_pred EEEECCCCC---cCCcEEEEECCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCC
Confidence 567898653 689999999999999999999998653 368997 8864 25799999999999999999999
Q ss_pred EEEEeeCC
Q 040562 416 TVSFKPTD 423 (427)
Q Consensus 416 riGfa~~~ 423 (427)
|||||+++
T Consensus 80 riGfA~~~ 87 (87)
T 1b5f_B 80 LVGFAEAA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcC
Confidence 99999874
|
| >2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.18 Score=41.20 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=60.0
Q ss_pred ccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCC----c-CCCcceeccCCCC
Q 040562 281 TFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPV----E-GPYDLCYSISSRP 355 (427)
Q Consensus 281 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~----~-~~~~~C~~~~~~~ 355 (427)
+++.|. +.|+|+.+ .+++|||.+.+.++.+..+++- +......... + .... +. .
T Consensus 25 ~~~~v~---v~InG~~~----------~~LvDTGAs~s~is~~~a~~lg--l~~~~~~~~~~~a~g~g~~~-~~-----~ 83 (148)
T 2i1a_A 25 PMLYIN---IEINNYPV----------KAFVDTGAQTTIMSTRLAKKTG--LSRMIDKRFIGEARGVGTGK-II-----G 83 (148)
T ss_dssp CCCEEE---EEETTEEE----------EEEECTTCSSCEEEHHHHHHHT--GGGGCBCCCC------------C-----E
T ss_pred ceEEEE---EEECCEEE----------EEEEECCCCccccCHHHHHHcC--CCccCCcceEEEEecCCCcc-cc-----c
Confidence 344444 67788744 4699999999999988877651 1111010000 0 0000 00 0
Q ss_pred ccCeEEEEEeCcEEEecCCceEEEeCCCeEEEEEEeCCCcceechhhhcceEEEEeCCCCEEEEe
Q 040562 356 RFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFK 420 (427)
Q Consensus 356 ~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa 420 (427)
......+.+++..+.++ +.+.+.+-..|||..||+++-+..|+.++++-|.
T Consensus 84 ~~~~~~i~ig~~~~~~~--------------~~vl~~~~d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 84 RIHQAQVKIETQYIPCS--------------FTVLDTDIDVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp EEEEEEEEETTEEEEEE--------------EEEECSSCSEEECHHHHHHTTCEEETTTTEEEET
T ss_pred EEEEEEEEECCEEecee--------------EEEecCCCCeEecHHHHhhCCEEEECCCCEEEEc
Confidence 11223455555432211 1122222458999999999999999999999885
|
| >2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.099 Score=42.79 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=27.0
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 040562 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQC 119 (427)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~ 119 (427)
..+.+++++.|+ ++++++++|||++.+-+..
T Consensus 23 ~~~~~~v~v~In--G~~~~~LvDTGAs~s~is~ 53 (148)
T 2i1a_A 23 QVPMLYINIEIN--NYPVKAFVDTGAQTTIMST 53 (148)
T ss_dssp CCCCCEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred ccceEEEEEEEC--CEEEEEEEECCCCccccCH
Confidence 456799999999 7899999999999988854
|
| >3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.18 Score=41.25 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=59.3
Q ss_pred EEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccC---CC-cCCCcceeccCCCCccCeEEEEEe
Q 040562 290 ISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQ---PV-EGPYDLCYSISSRPRFPEVTIHFR 365 (427)
Q Consensus 290 i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~---~~-~~~~~~C~~~~~~~~~P~i~~~f~ 365 (427)
++||++.+ .+++|||++.+.++.+.++++- +....... .. ......+. ...+...++++
T Consensus 29 ~~Ing~~v----------~~LVDTGAs~s~Is~~~A~rlG--L~~~~~~~~~~~a~g~G~~~~~-----g~v~~~~I~Ig 91 (148)
T 3s8i_A 29 CKVNGHPL----------KAFVDSGAQMTIMSQACAERCN--IMRLVDRRWAGVAKGVGTQRII-----GRVHLAQIQIE 91 (148)
T ss_dssp EEETTEEE----------EEEECTTCSSCEEEHHHHHHTT--CGGGEEGGGCEECCC---CEEE-----EEEEEEEEEET
T ss_pred EEECCEEE----------EEEEeCCCCcEeeCHHHHHHcC--CccccCcceeEEEEcCCccEEE-----EEEEEEEEEEC
Confidence 45777744 4799999999999999988771 11110000 00 00000011 01233344444
Q ss_pred CcEEEecCCceEEEeCCCeEEEE-EEeCC-CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 366 DADVKLSTSNVFMNISEDLVCSV-FNARD-DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 366 g~~~~l~~~~y~~~~~~~~~C~~-i~~~~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
+..+ .|-+ +.+.. -..|||..||+.+-.+.|++++++-|...
T Consensus 92 ~~~~---------------~~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~ 135 (148)
T 3s8i_A 92 GDFL---------------QCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTT 135 (148)
T ss_dssp TEEE---------------EEEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTTT
T ss_pred CEEE---------------EEEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEccC
Confidence 4322 1323 33322 46899999999999999999999988653
|
| >2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... | Back alignment and structure |
|---|
Probab=87.31 E-value=0.75 Score=34.61 Aligned_cols=27 Identities=33% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 92 LIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
++.|.|| .|.+.+++|||.+++-+...
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~ 36 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEM 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCC
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEecc
Confidence 5779999 79999999999999999654
|
| >1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* | Back alignment and structure |
|---|
Probab=87.07 E-value=0.61 Score=35.52 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=23.4
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeee
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQ 118 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~ 118 (427)
-++.|.|| .|.+.+++|||.+++-+.
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 46789999 799999999999999996
|
| >3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... | Back alignment and structure |
|---|
Probab=84.45 E-value=1.3 Score=33.32 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=23.8
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 92 LIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
++.|.|| +|.+.+++|||.+++-+...
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCc
Confidence 5779999 79999999999999999544
|
| >3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=1.2 Score=34.25 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=26.4
Q ss_pred EEEEEeC---CCCcEEEEEEEcCCCceeeeCCCCC
Q 040562 92 LIRISIG---TPPVEILAVADTGSDLIWTQCQPCP 123 (427)
Q Consensus 92 ~~~i~iG---tP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (427)
.+.|.|| +|+|.+..++|||.+++-+....+.
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~lP 46 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFS 46 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGSC
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccCC
Confidence 5566676 7899999999999999999776544
|
| >2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A* | Back alignment and structure |
|---|
Probab=80.03 E-value=1.6 Score=33.82 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.1
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
=++ |.|| .|.+.+++|||.+++-+...
T Consensus 15 P~v-ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 15 EIL-IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EEE-EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred CEE-EEEC--CEEEEEEecCCCCcEEEccc
Confidence 345 9999 79999999999999999653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 427 | ||||
| d1t6ex_ | 381 | b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr | 3e-43 | |
| g1lya.1 | 338 | b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) | 3e-32 | |
| d2apra_ | 325 | b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus | 1e-30 | |
| d1miqa_ | 373 | b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e | 1e-30 | |
| d3cmsa_ | 323 | b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos | 5e-30 | |
| d2qp8a1 | 387 | b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum | 6e-30 | |
| d1dpja_ | 329 | b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha | 8e-30 | |
| g1htr.1 | 372 | b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens | 6e-29 | |
| d1j71a_ | 334 | b.50.1.2 (A:) Acid protease {Yeast (Candida tropic | 2e-28 | |
| d1eaga_ | 342 | b.50.1.2 (A:) Acid protease {Yeast (Candida albica | 5e-28 | |
| g1b5f.1 | 326 | b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin | 1e-26 | |
| d1am5a_ | 324 | b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo | 1e-26 | |
| d1izea_ | 323 | b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o | 2e-26 | |
| d1qdma2 | 337 | b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase | 3e-26 | |
| d3psga_ | 370 | b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI | 8e-26 | |
| d1bxoa_ | 323 | b.50.1.2 (A:) Acid protease {Fungus (Penicillium j | 8e-25 | |
| d1smra_ | 335 | b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu | 2e-24 | |
| d1mppa_ | 357 | b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] | 2e-24 | |
| d2bjua1 | 329 | b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad | 4e-24 | |
| d1oewa_ | 330 | b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung | 7e-24 | |
| d1hrna_ | 337 | b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho | 6e-23 | |
| d1wkra_ | 340 | b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo | 6e-19 |
| >d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Xylanase inhibitor TAXI-I species: Wheat (Triticum aestivum) [TaxId: 4565]
Score = 154 bits (388), Expect = 3e-43
Identities = 66/377 (17%), Positives = 123/377 (32%), Gaps = 51/377 (13%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
Y I G V D L+W+ C P +P ++ Y C
Sbjct: 14 SLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSP--TCLLANAYPAPGC 66
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQA---VALPEIVF 205
+ C + Y + + + G L+ +T G ++
Sbjct: 67 PAPSC----GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLA 122
Query: 206 GCGTKNGGKF-NSKTDGIVGLGGGDASLISQMK--TTIAGKFSYCLVQQSSTKINFGTNG 262
C + G+ GL +L +Q+ +A +F CL FG
Sbjct: 123 ACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGP 182
Query: 263 IVSGSG---VVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTY 319
+ + TPL+ K + ++ +I VGD R+ V G+ G +++ +
Sbjct: 183 VPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVL 242
Query: 320 LPPAYASKLLSVMSSMIAAQPVEG-----------PYDLCYSISSR------PRFPEVTI 362
L P L+ + +AAQ G P+ +CY + P V +
Sbjct: 243 LRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQL 302
Query: 363 HFRD-ADVKLSTSNVFMNISEDLVCSVF---------NARDDIPLYGNIMQTNFLIGYDI 412
+D ++ N +++ + C F + R + G +F++ +D+
Sbjct: 303 GLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDM 362
Query: 413 EGRTVSF----KPTDCS 425
E + + F T C
Sbjct: 363 EKKRLGFSRLPHFTGCG 379
|
| >d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Bread mold (Rhizopus chinensis) [TaxId: 4843]
Score = 118 bits (296), Expect = 1e-30
Identities = 64/350 (18%), Positives = 119/350 (34%), Gaps = 51/350 (14%)
Query: 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYK 144
N EY +++IGTP + DTGS +W C +DP +SSTY+
Sbjct: 11 YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGS---GQTKYDPNQSSTYQ 67
Query: 145 YLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
+ +S+SYGD S ++G LA + V +G + +
Sbjct: 68 ADGRT-------------------WSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAK 108
Query: 205 FGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTNGIV 264
+ G DG++GLG + + +KT + S L+ + + G
Sbjct: 109 REAASFASGPN----DGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNG 164
Query: 265 SGSGVV------------STPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312
G + T + N + ++ +T+D +VG + +D
Sbjct: 165 GGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGI------LD 218
Query: 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLS 372
+GTTL LP A+ + + + F + A ++S
Sbjct: 219 TGTTLLILPNNIAASVARAYGAS------DNGDGTYTISCDTSAFKPLVFSINGASFQVS 272
Query: 373 TSNVFMNISEDLVCSVFNARD-DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
++ + + F + + G+ N + ++ V P
Sbjct: 273 PDSLVFEEFQGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAP 322
|
| >d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plasmepsin (a hemoglobin-degrading enzyme) species: Plasmodium vivax [TaxId: 5855]
Score = 119 bits (298), Expect = 1e-30
Identities = 56/401 (13%), Positives = 116/401 (28%), Gaps = 42/401 (10%)
Query: 26 TVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQADII 85
T+ F +E + K+ + L+N + + N + + S+ ++
Sbjct: 3 TLAFKIERPYDKVLKT-------ISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELD 55
Query: 86 PNVG-EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYK 144
+ +G + + + DTGS +W + C S C L+D +S +Y+
Sbjct: 56 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGC--SIKNLYDSSKSKSYE 113
Query: 145 YLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
G+ + D + G L+ + T E +
Sbjct: 114 KDGTKVDIT----------YGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDD---LEPI 160
Query: 205 FGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTNGIV 264
+ +G D +G + F++ L GI
Sbjct: 161 YSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIE 220
Query: 265 SGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAY 324
+ N ++ + LD + ++++DSGTT P +
Sbjct: 221 EKFYEGNITYEKLNHDLYWQIDLDVHFGKQ--------TMEKANVIVDSGTTTITAPSEF 272
Query: 325 ASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED- 383
+K + ++ + P Y P + + L I E
Sbjct: 273 LNKFFANLN--VIKVPFLPFYVTTCDNKE---MPTLEFKSANNTYTLEPEYYMNPILEVD 327
Query: 384 --LVCSVFNARD---DIPLYGNIMQTNFLIGYDIEGRTVSF 419
L D + + G+ + +D + +V F
Sbjct: 328 DTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGF 368
|
| >d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Chymosin (synonym: renin) species: Cow (Bos taurus) [TaxId: 9913]
Score = 116 bits (290), Expect = 5e-30
Identities = 66/345 (19%), Positives = 122/345 (35%), Gaps = 49/345 (14%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
+Y +I +GTPP E + DTGS W C + C +++ FDP++SST++ L
Sbjct: 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC--KNHQRFDPRKSSTFQNLGK 71
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
S+ YG S G L +TVTV + + G
Sbjct: 72 P-------------------LSIHYGTGSMQ-GILGYDTVTVSNIV-----DIQQTVGLS 106
Query: 209 TKNGGKFNSKTDGIVGLGGGDASLISQMKTT----------IAGKFSYCLVQQSSTKINF 258
T+ G F + + LG SL S+ +A + ++ +
Sbjct: 107 TQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESML 166
Query: 259 GTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLT 318
I S + + ++ T+D++++ GV+ G ++D+GT+
Sbjct: 167 TLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTIS----GVVVACEGGCQAILDTGTSKL 222
Query: 319 YLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFM 378
P + + ++ A Q G +D+ S P V L+ S +
Sbjct: 223 VGPSSDILNI---QQAIGATQNQYGEFDIDCDNLS--YMPTVVFEINGKMYPLTPSA-YT 276
Query: 379 NISEDLVCSVFNARDDIPLY--GNIMQTNFLIGYDIEGRTVSFKP 421
+ + S F + + + G++ + +D V
Sbjct: 277 SQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAK 321
|
| >d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: beta-secretase (memapsin) species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (293), Expect = 6e-30
Identities = 56/378 (14%), Positives = 116/378 (30%), Gaps = 70/378 (18%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
Y + +++G+PP + + DTGS P P ++ + Q SSTY+ L
Sbjct: 14 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP--FLHRY----YQRQLSSTYRDLRK 67
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
V Y + G+L T+ V++ V
Sbjct: 68 G-------------------VYVPYTQGKWE-GELGTDLVSIPHGPNVTV---RANIAAI 104
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTT----------IAGKFSYCLVQQSSTKI 256
T++ F S +GI+GL + + + FS L
Sbjct: 105 TESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLN 164
Query: 257 NFGTNGIVSGSGVVS----------TPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306
V GS ++ + +Y + + + + Q L +
Sbjct: 165 QSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNY 224
Query: 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPV-----EGPYDLCYSISSRPR--FPE 359
++DSGTT LP + + + + + G +C+ + P FP
Sbjct: 225 DKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 284
Query: 360 VTIHF------RDADVKLSTSNVFMNISEDLVCSVF------NARDDIPLYGNIMQTNFL 407
++++ + + + + + + + G ++ F
Sbjct: 285 ISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFY 344
Query: 408 IGYDIEGRTVSFKPTDCS 425
+ +D + + F + C
Sbjct: 345 VVFDRARKRIGFAVSACH 362
|
| >d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
Score = 116 bits (290), Expect = 8e-30
Identities = 60/347 (17%), Positives = 117/347 (33%), Gaps = 46/347 (13%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
+Y I++GTPP + DTGS +W C C+ +D + SS+YK
Sbjct: 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLH--SKYDHEASSSYKANGT 70
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPE 202
+++ YG S G ++ +T+++G + +A + P
Sbjct: 71 E-------------------FAIQYGTGSLE-GYISQDTLSIGDLTIPKQDFAEATSEPG 110
Query: 203 IVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN- 261
+ F G +G V Q +F++ L S N G
Sbjct: 111 LTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEAT 170
Query: 262 --GIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTY 319
GI L K ++ + + I +GD+ + S ID+GT+L
Sbjct: 171 FGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGA-----AIDTGTSLIT 225
Query: 320 LPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMN 379
LP A + + + + ++R P++ +F + + + +
Sbjct: 226 LPSGLAEMINAEIGAKKG-----WTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE 280
Query: 380 ISEDLVCSVF-----NARDDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+S + ++ + + G+ + YD+ V
Sbjct: 281 VSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAK 327
|
| >d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Yeast (Candida tropicalis) [TaxId: 5482]
Score = 111 bits (279), Expect = 2e-28
Identities = 63/354 (17%), Positives = 121/354 (34%), Gaps = 42/354 (11%)
Query: 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYK-------QDNPL 134
+I Y I +G+ + V DTGS +W Y +
Sbjct: 5 TTLINEGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGT 64
Query: 135 FDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS 194
FDP SS+ + L+ +S+ YGD + S G +TV G S
Sbjct: 65 FDPSSSSSAQNLNQD-------------------FSIEYGDLTSSQGSFYKDTVGFGGIS 105
Query: 195 GQAVALPEIVFGCGTK--NGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQS 252
+ ++ + G F + G +L Q +S L +
Sbjct: 106 IKNQQFADVTTTSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIIN-KNAYSLYLNSED 164
Query: 253 STKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312
++ G+ + + L + L +I+ + + D+V+D
Sbjct: 165 ASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSV------STNADVVLD 218
Query: 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHF-RDADVKL 371
SGTT+TY + A K ++ + + Y + S + +F + + +
Sbjct: 219 SGTTITYFSQSTADKFARIVGA------TWDSRNEIYRLPSCDLSGDAVFNFDQGVKITV 272
Query: 372 STSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425
S + + S+ +C +R+D + G+ I YD++ +T+S +
Sbjct: 273 PLSELILKDSDSSICYFGISRNDANILGDNFLRRAYIVYDLDDKTISLAQVKYT 326
|
| >d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Yeast (Candida albicans) [TaxId: 5476]
Score = 111 bits (277), Expect = 5e-28
Identities = 61/360 (16%), Positives = 122/360 (33%), Gaps = 51/360 (14%)
Query: 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNP-------LFD 136
+ Y I++G+ ++ + DTGS +W Y +D
Sbjct: 7 LHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYD 66
Query: 137 PQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQ 196
P SS + L N + + YGD S S G L +TV G S +
Sbjct: 67 PSGSSASQDL-------------------NTPFKIGYGDGSSSQGTLYKDTVGFGGVSIK 107
Query: 197 AVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLV-----QQ 251
L ++ + G G D ++ K + K +Y L
Sbjct: 108 NQVLADVDSTS--IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAA 165
Query: 252 SSTKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVI 311
+ I G + +++ P+ ++L ++ V + + + D+++
Sbjct: 166 TGQIIFGGVDNAKYSGSLIALPV---TSDRELRISLGSVEVSGKTI-----NTDNVDVLL 217
Query: 312 DSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHF-RDADVK 370
DSGTT+TYL A +++ + + + +V +F ++A +
Sbjct: 218 DSGTTITYLQQDLADQII----KAFNGKLTQDSNGNSFYEVDCNLSGDVVFNFSKNAKIS 273
Query: 371 LSTSNVFMNISED-----LVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425
+ S ++ D C + +D + G+ + I YD++ +S +
Sbjct: 274 VPASEFAASLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNEISLAQVKYT 333
|
| >d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin(ogen) species: Atlantic cod (Gadus morhua) [TaxId: 8049]
Score = 106 bits (266), Expect = 1e-26
Identities = 60/337 (17%), Positives = 110/337 (32%), Gaps = 32/337 (9%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
EY ISIGTPP + DTGS +W C C ++ F P++SSTY +
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQAC--SNHNKFKPRQSSTYVETGKT 70
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
G G D+ S G + +G + + P
Sbjct: 71 VDLTY----------GTGGMRGILGQDTVSVGGGSDPNQELGESQTE----PGPFQAAAP 116
Query: 210 KNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTNGIVSGSGV 269
+G + + FS+ L + G+ +
Sbjct: 117 FDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYT 176
Query: 270 VSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLL 329
S + + ++ + LD I+V Q + + G ++D+GT+ P + + ++
Sbjct: 177 GSIHWIPVTAEKYWQVALDGITVNGQ-----TAACEGCQAIVDTGTSKIVAPVSALANIM 231
Query: 330 SVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVF 389
I A +G + +S P++T L S +
Sbjct: 232 ----KDIGASENQGEM--MGNCASVQSLPDITFTINGVKQPLPPSAYIEGDQAFCTSGLG 285
Query: 390 NA-----RDDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
++ ++ ++G++ N+ YD V F P
Sbjct: 286 SSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAP 322
|
| >d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Fungus (Aspergillus oryzae) [TaxId: 5062]
Score = 106 bits (264), Expect = 2e-26
Identities = 57/360 (15%), Positives = 114/360 (31%), Gaps = 52/360 (14%)
Query: 75 SSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPL 134
+++ + N EY+ ++++G + + DTGS +W P + +
Sbjct: 1 AATGSVTTNPTSNDEEYITQVTVGDDTLGL--DFDTGSADLWVFSSQTP--SSERSGHDY 56
Query: 135 FDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS 194
+ P S+ +S+SYGD S ++GD+ + VTVG S
Sbjct: 57 YTPGSSAQKID--------------------GATWSISYGDGSSASGDVYKDKVTVGGVS 96
Query: 195 GQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTI----------AGKF 244
+ A+ ++ DG++GL + + F
Sbjct: 97 YDSQAVESAEKVSSEFTQ---DTANDGLLGLAFSSINTVQPTPQKTFFDNVKSSLSEPIF 153
Query: 245 SYCLVQQSSTKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304
+ L + +FG +G + T N + F+ T D S+G +
Sbjct: 154 AVALKHNAPGVYDFGYTDSSKYTGSI-TYTDVDNSQGFWGFTADGYSIGSDSS------S 206
Query: 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHF 364
+ D+GTTL L + + + Y S P+ ++
Sbjct: 207 DSITGIADTGTTLLLLDDSIVDA----YYEQVNGASYDSSQG-GYVFPSSASLPDFSVTI 261
Query: 365 RDADVKLSTSNVFMNISEDLVC-SVFNARDDIPLY--GNIMQTNFLIGYDIEGRTVSFKP 421
D + + + + I G++ + + +D G + F
Sbjct: 262 GDYTATVPGEYISFADVGNGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAA 321
|
| >d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plant acid proteinase, phytepsin species: Barley (Hordeum vulgare) [TaxId: 4513]
Score = 106 bits (264), Expect = 3e-26
Identities = 69/365 (18%), Positives = 119/365 (32%), Gaps = 56/365 (15%)
Query: 81 QADIIP--NV--GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFD 136
+ DI+ N +Y I +GTPP + + DTGS +W C S + +
Sbjct: 3 EGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIA-CYLHSRYK 61
Query: 137 PQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQ 196
SSTYK ++ YG S + G + ++VTVG +
Sbjct: 62 AGASSTYKKNGKP-------------------AAIQYGTGSIA-GYFSEDSVTVGDLVVK 101
Query: 197 AVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIA---------GKFSYC 247
E G +K DGI+GLG + S+ + FS+
Sbjct: 102 DQEFIEATKEPGITFLV---AKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFW 158
Query: 248 LVQQSSTKI--NFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305
L + G+ V + K ++ + + VG + G +G
Sbjct: 159 LNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCA 218
Query: 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFR 365
+ DSGT+L P A +++ + + A P+ C S+ S P
Sbjct: 219 ---AIADSGTSLLAGPTAIITEINEKIGA--AGSPMGESAVDCGSLGSMPDI---EFTIG 270
Query: 366 DADVKLSTSNVFMNISEDL--VC-------SVFNARDDIPLYGNIMQTNFLIGYDIEGRT 416
L + + E C + R + + G++ + +D
Sbjct: 271 GKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLR 330
Query: 417 VSFKP 421
+ F
Sbjct: 331 IGFAK 335
|
| >d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin(ogen) species: Pig (Sus scrofa) [TaxId: 9823]
Score = 105 bits (262), Expect = 8e-26
Identities = 72/350 (20%), Positives = 124/350 (35%), Gaps = 54/350 (15%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
EY I IGTP + + DTGS +W C S D+ F+P SST++ S
Sbjct: 56 TEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC--SSLACSDHNQFNPDDSSTFEATSQ 113
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
S++YG S + G L +TV VG S +FG
Sbjct: 114 E-------------------LSITYGTGSMT-GILGYDTVQVGGIS-----DTNQIFGLS 148
Query: 209 TKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGK-----------FSYCLVQQSSTKIN 257
G F LG S+ + T + FS L +
Sbjct: 149 ETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSV 208
Query: 258 FGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTL 317
GI S S + + + ++ +TLD+I++ + + + G ++D+GT+L
Sbjct: 209 VLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETI----ACSGGCQAIVDTGTSL 264
Query: 318 TYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRPRFPEVTIHFRDADVKLSTSNV 376
P + + + S + A++ +G + C SI S P++ LS S
Sbjct: 265 LTGPTSAIANI---QSDIGASENSDGEMVISCSSIDS---LPDIVFTIDGVQYPLSPSAY 318
Query: 377 FMNISEDLVCSVF-----NARDDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ + + ++ + G++ + +D V P
Sbjct: 319 ILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 368
|
| >d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]
Score = 102 bits (253), Expect = 8e-25
Identities = 66/363 (18%), Positives = 124/363 (34%), Gaps = 58/363 (15%)
Query: 75 SSSKVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPL 134
++S V+ N EY+ ++IG + + DTGS +W P SQ + +
Sbjct: 1 AASGVATNTPTANDEEYITPVTIGGTTLNL--NFDTGSADLWVFSTELPASQQ--SGHSV 56
Query: 135 FDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS 194
++P + +S+SYGD S ++G++ T++VTVG +
Sbjct: 57 YNPSATGKELS--------------------GYTWSISYGDGSSASGNVFTDSVTVGGVT 96
Query: 195 GQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSST 254
+ +F T+ GL G S I+ ++ F + +
Sbjct: 97 -----AHGQAVQAAQQISAQFQQDTNND-GLLGLAFSSINTVQPQSQTTFFDTVKSSLAQ 150
Query: 255 KINFGTNGIVSGSGVVS------------TPLLAKNPKTFYSLTLDAISVGDQRLGVISG 302
+ T N + F+S +D+ + G Q
Sbjct: 151 PLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGD---- 206
Query: 303 SNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTI 362
G + D+GTTL L + S+ S +S G C + P+ ++
Sbjct: 207 ---GFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCST-----NLPDFSV 258
Query: 363 HFRDADVKLSTSNVFMNISEDLVCSVF----NARDDIPLYGNIMQTNFLIGYDIEGRTVS 418
+ S + S D + N+ ++G+I + + +D +G +
Sbjct: 259 SISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLG 318
Query: 419 FKP 421
F P
Sbjct: 319 FAP 321
|
| >d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Chymosin (synonym: renin) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (251), Expect = 2e-24
Identities = 63/345 (18%), Positives = 111/345 (32%), Gaps = 44/345 (12%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCS 149
+Y I IGTPP + DTGS +W C + L++ SS+Y
Sbjct: 16 QYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENGDD 75
Query: 150 SSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS-----GQAVALPEIV 204
+++ YG G L+ ++VTVG + G+ LP I
Sbjct: 76 -------------------FTIHYGSGRVK-GFLSQDSVTVGGITVTQTFGEVTQLPLIP 115
Query: 205 FGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTNGIV 264
F +G VG I FS + G
Sbjct: 116 FMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGGEVVLGGS 175
Query: 265 SGSGVVSTPLLAK-NPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPA 323
+ + +T+ +SVG L G ++V+D+G++ P +
Sbjct: 176 DPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTL----LCEEGCEVVVDTGSSFISAPTS 231
Query: 324 YASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE- 382
++ + + ++ S S P P+++ + LS+++ +
Sbjct: 232 SLKLIMQALGAKEKRL-----HEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNR 286
Query: 383 -DLVCSVFNARDDIP-------LYGNIMQTNFLIGYDIEGRTVSF 419
D +C+V DIP + G F +D + F
Sbjct: 287 RDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGF 331
|
| >d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin species: Mucor pusillus [TaxId: 4840]
Score = 101 bits (252), Expect = 2e-24
Identities = 68/363 (18%), Positives = 117/363 (32%), Gaps = 53/363 (14%)
Query: 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQ-CYKQDNPLFDPQRSSTYKY 145
++ EY I +SIGTP + + DTGS W + C S+ C + FDP SST+K
Sbjct: 12 DLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGK--RFFDPSSSSTFKE 69
Query: 146 LSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS--GQAVALPEI 203
+ +++YG + G +++TVG + Q +A +
Sbjct: 70 TDYN-------------------LNITYGTGGAN-GIYFRDSITVGGATVKQQTLAYVDN 109
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQ------------ 251
V G + DGI G D + + L +Q
Sbjct: 110 VSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYM 169
Query: 252 -----SSTKINFGTNGIVSGSGVVSTPLLAKNPK-TFYSLTLDAISVGDQRLGVISGSNP 305
+ G N + G + T +L F+ + + + G+
Sbjct: 170 NTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQA 229
Query: 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRF----PEVT 361
ID+GT P ++A K++ S+ F +
Sbjct: 230 ---FTIDTGTNFFIAPSSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSG 286
Query: 362 IHFRDADVKLSTSNVFMNISED-LVCSVFNARDDIPLY--GNIMQTNFLIGYDIEGRTVS 418
DV + S + + + + C D + GN+ F+ YD +
Sbjct: 287 SSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIG 346
Query: 419 FKP 421
F P
Sbjct: 347 FAP 349
|
| >d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plasmepsin (a hemoglobin-degrading enzyme) species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]
Score = 100 bits (248), Expect = 4e-24
Identities = 49/337 (14%), Positives = 93/337 (27%), Gaps = 34/337 (10%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
+ +G + DTGS +W C + C L+D +S TY+
Sbjct: 14 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGC--LTKHLYDSSKSRTYEKDGT 71
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
G S + N L + + V T+G E +
Sbjct: 72 KVEM--------NYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNG-----FEPTYTAS 118
Query: 209 TKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTNGIVSGSG 268
T +G D +G + F++ L GI
Sbjct: 119 TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFY 178
Query: 269 VVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328
N ++ +TLDA + ++DSGT+ +P + +K+
Sbjct: 179 EGPLTYEKLNHDLYWQITLDAHVGN--------IMLEKANCIVDSGTSAITVPTDFLNKM 230
Query: 329 LSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED---LV 385
L + + ++ + + P + L +I + L
Sbjct: 231 LQNLDVIKVPF-----LPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLC 285
Query: 386 CSVFNARD---DIPLYGNIMQTNFLIGYDIEGRTVSF 419
D + G+ + +D + +V
Sbjct: 286 MLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGI 322
|
| >d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Chymosin (synonym: renin) species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.6 bits (239), Expect = 6e-23
Identities = 61/348 (17%), Positives = 109/348 (31%), Gaps = 46/348 (13%)
Query: 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSC 148
+Y I IGTPP V DTGS +W C + LFD SS+YK+
Sbjct: 15 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGT 74
Query: 149 SSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATET-----VTVGSTSGQAVALPEI 203
++ Y + S G L+ + +TV G+ +P +
Sbjct: 75 E-------------------LTLRYSTGTVS-GFLSQDIITVGGITVTQMFGEVTEMPAL 114
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTNGI 263
F +G + +G I FS+ + S + G +
Sbjct: 115 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIV 174
Query: 264 VSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISG---SNPGGDIVIDSGTTLTYL 320
+ G N + + + + V S G ++D+G +
Sbjct: 175 L---GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISG 231
Query: 321 PPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNI 380
+ KL+ A + +D + P P+++ H + L++++
Sbjct: 232 STSSIEKLME------ALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQE 285
Query: 381 SED--LVCSVFNARDDIP-------LYGNIMQTNFLIGYDIEGRTVSF 419
S +C++ DIP G F +D + F
Sbjct: 286 SYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 333
|
| >d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]
Score = 85.4 bits (210), Expect = 6e-19
Identities = 62/376 (16%), Positives = 119/376 (31%), Gaps = 87/376 (23%)
Query: 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTY 143
+ +Y++ + +G+P + DTGS W ++ST
Sbjct: 7 ATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKS--------------YVKTSTS 52
Query: 144 KYLSCSSSQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEI 203
+ + SV+YG SFS G T+TVT+GS + +P+
Sbjct: 53 SAT-------------------SDKVSVTYGSGSFS-GTEYTDTVTLGSLT-----IPKQ 87
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDASL-------ISQMKTTIAGKFSYCLVQQSSTKI 256
G +++ G DGI+G+G D ++ + + T FS + + +
Sbjct: 88 SIGVASRDSG--FDGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAV 145
Query: 257 NFGTNGIVSGSG----------------VVSTPLLAKNPKTFYSLTLDAISVGDQRLGVI 300
+F S + + TP+ + +P + Y +I G
Sbjct: 146 SFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSS----- 200
Query: 301 SGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEV 360
+ ++D+GTTLT + +K A L + + +
Sbjct: 201 TSILSSTAGIVDTGTTLTLIASDAFAKYKKATG----AVADNNTGLLRLTTAQYANLQSL 256
Query: 361 TIHFRDADVKLSTSNVFMNISEDLV-----CSVFNARDDIP---------LYGNIMQTNF 406
+L+ + + + SV+ D+ + G F
Sbjct: 257 FFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERF 316
Query: 407 LIGYDIEGRTVSFKPT 422
YD + + T
Sbjct: 317 YSVYDTTNKRLGLATT 332
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| d3psga_ | 370 | Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | 100.0 | |
| g1htr.1 | 372 | Pepsin(ogen) {Human (Homo sapiens), progastricsin | 100.0 | |
| d1oewa_ | 330 | Endothiapepsin {Chestnut blight fungus (Endothia p | 100.0 | |
| d2apra_ | 325 | Acid protease {Bread mold (Rhizopus chinensis) [Ta | 100.0 | |
| d1j71a_ | 334 | Acid protease {Yeast (Candida tropicalis) [TaxId: | 100.0 | |
| d1dpja_ | 329 | Acid protease {Baker's yeast (Saccharomyces cerevi | 100.0 | |
| d1miqa_ | 373 | Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo | 100.0 | |
| d1smra_ | 335 | Chymosin (synonym: renin) {Mouse (Mus musculus) [T | 100.0 | |
| d1am5a_ | 324 | Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: | 100.0 | |
| d1eaga_ | 342 | Acid protease {Yeast (Candida albicans) [TaxId: 54 | 100.0 | |
| d1mppa_ | 357 | Pepsin {Mucor pusillus [TaxId: 4840]} | 100.0 | |
| d1hrna_ | 337 | Chymosin (synonym: renin) {Human (Homo sapiens) [T | 100.0 | |
| d1izea_ | 323 | Acid protease {Fungus (Aspergillus oryzae) [TaxId: | 100.0 | |
| d2bjua1 | 329 | Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo | 100.0 | |
| d2qp8a1 | 387 | beta-secretase (memapsin) {Human (Homo sapiens) [T | 100.0 | |
| d1bxoa_ | 323 | Acid protease {Fungus (Penicillium janthinellum), | 100.0 | |
| g1lya.1 | 338 | Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wkra_ | 340 | Acid protease {Irpex lacteus (Polyporus tulipifera | 100.0 | |
| d1qdma2 | 337 | Plant acid proteinase, phytepsin {Barley (Hordeum | 100.0 | |
| d3cmsa_ | 323 | Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId | 100.0 | |
| g1b5f.1 | 326 | Plant acid proteinase, phytepsin {Cynara carduncul | 100.0 | |
| d1t6ex_ | 381 | Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu | 100.0 | |
| d2nmza1 | 99 | Human immunodeficiency virus type 1 protease {Huma | 83.97 | |
| d4fiva_ | 113 | Feline immunodeficiency virus (FIV) protease {Feli | 83.02 | |
| d3ecga1 | 99 | Human immunodeficiency virus type 2 (HIV-2) protea | 82.21 | |
| d2fmba_ | 104 | EIAV protease {Equine infectious anemia virus [Tax | 81.52 |
| >d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin(ogen) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=3.5e-58 Score=447.92 Aligned_cols=298 Identities=24% Similarity=0.409 Sum_probs=253.5
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
++.+..+.+|+++|+||||||+|.|+|||||+++||+|..|. .|..+.++.|||++|+|++...
T Consensus 49 ~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~--~~~~~~~~~yd~~~Sst~~~~~-------------- 112 (370)
T d3psga_ 49 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACSDHNQFNPDDSSTFEATS-------------- 112 (370)
T ss_dssp TTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SGGGTTSCCBCGGGCTTCEEEE--------------
T ss_pred ccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCC--CcccccccccCCCcccccccCC--------------
Confidence 445667899999999999999999999999999999999999 7777889999999999999987
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh--------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS-------- 231 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s-------- 231 (427)
|.|.+.|++|+.. |.++.|++.+++. .++++.||++....+.+ ....+||+|||++..+
T Consensus 113 -----~~~~~~Yg~Gs~~-G~~~~d~~~~~~~-----~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~ 181 (370)
T d3psga_ 113 -----QELSITYGTGSMT-GILGYDTVQVGGI-----SDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVF 181 (370)
T ss_dssp -----EEEEEESSSCEEE-EEEEEEEEEETTE-----EEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHH
T ss_pred -----CcEEEEeCCceEE-EEEEEEEEeeece-----eeeeeEEEEEeeccCceecccccccccccccCcccccCCCchh
Confidence 8999999999876 9999999999997 89999999999887744 5678999999986543
Q ss_pred --hHHhhhhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCC
Q 040562 232 --LISQMKTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305 (427)
Q Consensus 232 --l~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 305 (427)
+..| +.+..++||+|+.+... |.|+||| ..++.++ ++|+|+.. ..+|.|.++++.++++.+.. ..
T Consensus 182 ~~l~~~-~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~-l~~~p~~~---~~~w~v~~~~i~v~g~~~~~----~~ 252 (370)
T d3psga_ 182 DNLWDQ-GLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGS-LNWVPVSV---EGYWQITLDSITMDGETIAC----SG 252 (370)
T ss_dssp HHHHHT-TCSSSSEEEEEEC-----CEEEEETCCCGGGBSSC-CEEEECSE---ETTEEEEECEEESSSSEEEC----TT
T ss_pred hhhhhh-cccccceeEEEeecCCCCCceEecCCcCchhcccc-eeEEeecc---cceEEEEEeeEEeCCeEEec----CC
Confidence 3444 66789999999987644 9999999 4456665 99999986 78999999999999988776 34
Q ss_pred CCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeE
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLV 385 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~ 385 (427)
+..++|||||+++++|++++++|++++.+...... .+..+|+... .+|+|+|+|+|+++.|++++|+++.++ .
T Consensus 253 ~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~--~~~~~C~~~~---~~P~l~f~f~g~~~~l~~~~yi~~~~~--~ 325 (370)
T d3psga_ 253 GCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDG--EMVISCSSID---SLPDIVFTIDGVQYPLSPSAYILQDDD--S 325 (370)
T ss_dssp CEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTC--CEECCGGGGG---GCCCEEEEETTEEEEECHHHHEEECSS--C
T ss_pred CccEEEecCCceEeCCHHHHHHHHHHhCCeeecCC--cEEEeccccC---CCceEEEEECCEEEEEChHHeEEEcCC--e
Confidence 78999999999999999999999999876544321 4566798653 689999999999999999999987543 4
Q ss_pred EEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 386 CSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 386 C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
|+. |... ++.||||++|||++|+|||++++||||||+
T Consensus 326 c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~ 369 (370)
T d3psga_ 326 CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV 369 (370)
T ss_dssp EEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred EEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEec
Confidence 765 6532 257999999999999999999999999996
|
| >d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Bread mold (Rhizopus chinensis) [TaxId: 4843]
Probab=100.00 E-value=4.9e-55 Score=418.37 Aligned_cols=295 Identities=23% Similarity=0.379 Sum_probs=249.8
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCC
Q 040562 86 PNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEG 165 (427)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~ 165 (427)
.++.+|+++|.||||||++.|++||||+++||+|++|. .|.. .++.|||++|+|++...
T Consensus 12 ~~d~~Y~~~i~iGtP~Q~~~v~vDTGS~~~Wv~~~~C~--~c~~-~~~~y~~~~SsT~~~~~------------------ 70 (325)
T d2apra_ 12 GNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT--NCGS-GQTKYDPNQSSTYQADG------------------ 70 (325)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCS--SCCT-TSCCBCGGGCTTCEEEE------------------
T ss_pred CCCcEEEEEEEEeCCCEEEEEEEECCCCcEEEeCCCCC--cccc-CCCccCcccCCceeECC------------------
Confidence 35689999999999999999999999999999999998 7753 35689999999999986
Q ss_pred CceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-CCCCceEeecCCCCCh-------hHHhh-
Q 040562 166 NCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDAS-------LISQM- 236 (427)
Q Consensus 166 ~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s-------l~~ql- 236 (427)
|.|.+.|++|+.+.|.+++|++++++. .++++.|+++......+ ....+||+|||+...+ ++.++
T Consensus 71 -~~~~~~y~~g~~~~G~~~~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~GilGlg~~~~~~~~~~~~~~~~l~ 144 (325)
T d2apra_ 71 -RTWSISYGDGSSASGILAKDNVNLGGL-----LIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLI 144 (325)
T ss_dssp -EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHHHHHH
T ss_pred -eEEEEEeCCCCeEEEEEEeeeEEeeee-----eccCcceeeeeeecccccccccCcccccccccccccccCCcchhHHH
Confidence 899999999987789999999999997 89999999999876644 5678999999985432 23322
Q ss_pred --hhhccCceEEEeecCCC---ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcE
Q 040562 237 --KTTIAGKFSYCLVQQSS---TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309 (427)
Q Consensus 237 --~~i~~~~Fs~~l~~~~~---G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 309 (427)
+.+.+++||+||.+... |.|+||| ..++.++ ++|+|+... .++|.|.++++.+++..+.. ...+
T Consensus 145 ~~g~i~~~~fs~~l~~~~~~~~g~l~~Gg~d~~~~~~~-~~~~~~~~~--~~~~~v~l~~i~i~~~~~~~------~~~~ 215 (325)
T d2apra_ 145 SQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGS-LTTVPIDNS--RGWWGITVDRATVGTSTVAS------SFDG 215 (325)
T ss_dssp HTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSC-CEEEECBCT--TSSCEEEECEEEETTEEEEC------CEEE
T ss_pred hhccccceeEEEEeccCCCCCCeEEEecCCCchhhccc-eeeEeecCC--CceEEEEEeeEEECCEeecc------eeee
Confidence 56788999999976532 9999999 4556665 999999864 67999999999999988764 6789
Q ss_pred EEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEE-
Q 040562 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSV- 388 (427)
Q Consensus 310 iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~- 388 (427)
+|||||++++||.+++++|.+.+.+..... ..+..+|+.. .+|+|+|+|+|.++.|++++|+++..++ .|+.
T Consensus 216 iiDSGt~~~~lp~~~~~~l~~~~~~~~~~~--~~~~~~C~~~----~~p~i~f~f~g~~~~i~~~~y~~~~~~~-~C~~~ 288 (325)
T d2apra_ 216 ILDTGTTLLILPNNIAASVARAYGASDNGD--GTYTISCDTS----AFKPLVFSINGASFQVSPDSLVFEEFQG-QCIAG 288 (325)
T ss_dssp EECTTCSSEEEEHHHHHHHHHHHTCEECSS--SCEEECSCGG----GCCCEEEEETTEEEEECGGGGEEEEETT-EEEES
T ss_pred eccCCCccccCCHHHHHHHHHHhCCcccCC--CceeecccCC----CCCcEEEEECCEEEEEChHHeEEecCCC-EEEEE
Confidence 999999999999999999999987543322 1456678642 5799999999999999999999987655 6776
Q ss_pred EEeCC-CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 389 FNARD-DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 389 i~~~~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
|++.+ +.+|||++|||++|+|||++++||||||+.
T Consensus 289 i~~~~~~~~iLG~~flr~~y~vfD~~~~~IGfAp~a 324 (325)
T d2apra_ 289 FGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp EEEESSSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EccCCCCCEEECHHHhCcEEEEEECCCCEEeEEEcC
Confidence 88765 779999999999999999999999999973
|
| >d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=100.00 E-value=1.8e-54 Score=415.84 Aligned_cols=298 Identities=22% Similarity=0.362 Sum_probs=248.8
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCC-------CCCCCCCCCCCCcceeecCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYK-------QDNPLFDPQRSSTYKYLSCSSSQCA 154 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~-------~~~~~y~p~~Sst~~~~~c~~~~C~ 154 (427)
..+...+..|+++|.||||||++.|++||||+++||++..|.+..|.. +.++.|||++|+|++...
T Consensus 5 ~~~~~~~~~Y~~~i~iGtP~q~~~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~c~~~~~y~~~~SsT~~~~~------- 77 (334)
T d1j71a_ 5 TTLINEGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLN------- 77 (334)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEE-------
T ss_pred eeeccCCCEEEEEEEEcCCCeEEEEEEECCCcceEEeeCCCCccccccccCCcccccCCcCCcccCCcccCCC-------
Confidence 344556789999999999999999999999999999876554222211 356789999999999987
Q ss_pred CCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCCh---
Q 040562 155 PPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDAS--- 231 (427)
Q Consensus 155 ~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s--- 231 (427)
|.+.+.|++|....|.++.|+++|++. .++++.||++.... ..+|++|||+...+
T Consensus 78 ------------~~~~~~Y~~g~~~~G~~~~D~~~~g~~-----~~~~~~f~~~~~~~-----~~~GilGlg~~~~~~~~ 135 (334)
T d1j71a_ 78 ------------QDFSIEYGDLTSSQGSFYKDTVGFGGI-----SIKNQQFADVTTTS-----VDQGIMGIGFTADEAGY 135 (334)
T ss_dssp ------------EEEEEEBTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEES-----SSSCEEECSCGGGSSTT
T ss_pred ------------cCEEEEeCCCceEEEEEEeeEEEEeee-----eccCceeeeeeeec-----cccCccccccccccccc
Confidence 899999999888889999999999987 89999999998875 45899999986432
Q ss_pred ---------hHHhhhhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 232 ---------LISQMKTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 232 ---------l~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
+.+| +.+.+++|++|+.+... |+|+||| ..++.++ +.|+|+.. ..+|.|++++|+|++..+.
T Consensus 136 ~~~~~~~~~l~~q-~~i~~~~fs~~l~~~~~~~g~l~lGg~d~~~~~g~-~~~~~~~~---~~~~~v~l~~i~v~g~~~~ 210 (334)
T d1j71a_ 136 NLYDNVPVTLKKQ-GIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGT-LTALPVTS---SVELRVHLGSINFDGTSVS 210 (334)
T ss_dssp CCCCCHHHHHHHT-TSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEE-EEEEECCC---SSSCEEEEEEEEETTEEEE
T ss_pred cccchhhHHHHhc-cccccceEEEEeccCCCCCceEEecccChhhcccc-eeEeeecc---ccceEEeeceEEECCEEec
Confidence 4455 66788999999987654 9999999 5667666 99999986 6789999999999999887
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEe-CcEEEecCCceE
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFR-DADVKLSTSNVF 377 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~~~y~ 377 (427)
. +..++|||||++++||++++++|++++......... .+..+|. ...|+++|+|+ |++++||+++|+
T Consensus 211 ~------~~~aiiDSGt~~~~lp~~~~~~l~~~~~~~~~~~~~-~~~~~~~-----~~~p~i~f~f~~g~~~~i~~~~y~ 278 (334)
T d1j71a_ 211 T------NADVVLDSGTTITYFSQSTADKFARIVGATWDSRNE-IYRLPSC-----DLSGDAVFNFDQGVKITVPLSELI 278 (334)
T ss_dssp E------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEETTTT-EEECSSS-----CCCSEEEEEESTTCEEEEEGGGGE
T ss_pred c------cccccccCCCcceeccHHHHHHHHHHhCCEEcCCCC-eeecccc-----ccCCCceEEeCCCEEEEEChHHeE
Confidence 5 568999999999999999999999998665433222 2222333 25699999996 699999999999
Q ss_pred EEeCCCeEEEE-EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 378 MNISEDLVCSV-FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 378 ~~~~~~~~C~~-i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
++..++..|+. |++. +.||||++|||++|++||++|+|||||+++|++
T Consensus 279 ~~~~~~~~C~~~i~~~-~~~ILG~~fl~~~y~vfD~~n~~iGfA~~~~~~ 327 (334)
T d1j71a_ 279 LKDSDSSICYFGISRN-DANILGDNFLRRAYIVYDLDDKTISLAQVKYTS 327 (334)
T ss_dssp EECSSSSCEEESEEEC-TTCEECHHHHTTEEEEEETTTTEEEEEEECCCS
T ss_pred EecCCCCEEEEEecCC-CCcEECHHhhCcEEEEEECCCCEEEEEECCCCC
Confidence 98777778986 7764 679999999999999999999999999999986
|
| >d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
Probab=100.00 E-value=1.6e-54 Score=415.39 Aligned_cols=297 Identities=23% Similarity=0.413 Sum_probs=250.7
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
++.++.+.+|+++|.||||||++.|++||||+++||+|..|. .|..+.++.|||++|+|++...
T Consensus 6 pl~n~~~~~Y~~~i~iGtP~q~~~~~iDTGSs~~Wv~~~~C~--~~~c~~~~~f~~~~Sst~~~~~-------------- 69 (329)
T d1dpja_ 6 PLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG--SLACFLHSKYDHEASSSYKANG-------------- 69 (329)
T ss_dssp ECEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SHHHHTSCCBCGGGCTTCEEEE--------------
T ss_pred EeEEccCCEEEEEEEEeCCCeEEEEEEECCcccEEEECCCCC--CccccCCCcCCcccCCceeECC--------------
Confidence 344567899999999999999999999999999999999998 6665788999999999999986
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh--------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS-------- 231 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s-------- 231 (427)
|.+.+.|++|+.. |.++.|++++++. .+.++.|+++....+ .+ ....+||+|||++..+
T Consensus 70 -----~~~~~~y~~gs~~-G~~~~D~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~Gi~Glg~~~~~~~~~~~~~ 138 (329)
T d1dpja_ 70 -----TEFAIQYGTGSLE-GYISQDTLSIGDL-----TIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPF 138 (329)
T ss_dssp -----EEEEEEETTEEEE-EEEEEEEEEETTE-----EEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHH
T ss_pred -----eeEEEEccCceEE-EEEEEEEEEecce-----EEeeEEEEEEeeccCccccccccccccccccCccccccCCchh
Confidence 8999999999765 9999999999987 888999999988776 33 5678999999986543
Q ss_pred --hHHhhhhhccCceEEEeecCCC-----ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeecc
Q 040562 232 --LISQMKTTIAGKFSYCLVQQSS-----TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISG 302 (427)
Q Consensus 232 --l~~ql~~i~~~~Fs~~l~~~~~-----G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 302 (427)
+..| +.+..+.||+||.+... |.|+||| ..++.++ +.|+|+.. ..+|.|.+++|.|+++.+...
T Consensus 139 ~~l~~~-~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~~~~~~-~~~~~~~~---~~~~~v~~~~i~v~~~~~~~~-- 211 (329)
T d1dpja_ 139 YNAIQQ-DLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGD-ITWLPVRR---KAYWEVKFEGIGLGDEYAELE-- 211 (329)
T ss_dssp HHHHHT-TCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEE-EEEEECSS---BTTBEEEEEEEEETTEEEECS--
T ss_pred hhHhhc-cCcccceEEEEEEecCCCcCCCCceECCCCchhhccCc-eeEecccc---cceeEEEEeeEEECCeEeeee--
Confidence 3334 66788999999975421 8999999 4566665 99999976 789999999999999987753
Q ss_pred CCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC
Q 040562 303 SNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE 382 (427)
Q Consensus 303 ~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~ 382 (427)
+..++|||||+++++|++++++|.+++....... ..+..+|.... .+|+|+|+|+|.+++|+|++|+++.++
T Consensus 212 ---~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~--~~~~~~c~~~~---~~P~i~f~f~g~~~~l~p~~y~~~~~~ 283 (329)
T d1dpja_ 212 ---SHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWT--GQYTLDCNTRD---NLPDLIFNFNGYNFTIGPYDYTLEVSG 283 (329)
T ss_dssp ---SCEEEECTTCSCEEECHHHHHHHHHHHTCEECTT--SSEEECGGGGG---GCCCEEEEETTEEEEECTTTSEEEETT
T ss_pred ---ecccccCcccceeeCCHHHHHHHHHHhCCccccc--eeEEEeccccC---ccceEEEEECCEEEEECHHHeEEecCC
Confidence 6789999999999999999999999986543221 14556687543 789999999999999999999988653
Q ss_pred CeEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 383 DLVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 383 ~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.|+. |...+ +.+|||++|||++|+|||++++||||||+
T Consensus 284 --~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a 328 (329)
T d1dpja_ 284 --SCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 328 (329)
T ss_dssp --EEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred --cEEEEEEECccCCCCCCcEEEcHHhhCcEEEEEECCCCEEEEEEe
Confidence 5766 76542 45899999999999999999999999996
|
| >d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plasmepsin (a hemoglobin-degrading enzyme) species: Plasmodium vivax [TaxId: 5855]
Probab=100.00 E-value=1.3e-53 Score=416.14 Aligned_cols=297 Identities=18% Similarity=0.322 Sum_probs=246.6
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
.+.+..+.+|+++|+||||||+|.|+|||||+++||+|..|. .|..+.++.|||++|+|++..+
T Consensus 53 ~l~n~~~~~Y~~~I~iGtP~Q~~~v~~DTGSs~lWv~~~~C~--~~~c~~~~~y~~~~SsT~~~~~-------------- 116 (373)
T d1miqa_ 53 ELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SSGCSIKNLYDSSKSKSYEKDG-------------- 116 (373)
T ss_dssp CGGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCC--SSGGGGSCCBCGGGCTTCEEEE--------------
T ss_pred EeeeccCCEEEEEEEECCCCEEEEEEEECCchheEEECCCCC--CccccCCCccCCCCCCceeECC--------------
Confidence 445667899999999999999999999999999999999999 6666788999999999999987
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC--C-CCCCceEeecCCCCCh-------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK--F-NSKTDGIVGLGGGDAS------- 231 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~--~-~~~~~GilGLg~~~~s------- 231 (427)
|.+.+.|++|++. |.+++|+|++++. .++++.|+++...... + ....+|++||+.....
T Consensus 117 -----~~~~~~y~~G~~~-G~~~~D~v~ig~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 185 (373)
T d1miqa_ 117 -----TKVDITYGSGTVK-GFFSKDLVTLGHL-----SMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPI 185 (373)
T ss_dssp -----EEEEEEETTEEEE-EEEEEEEEEETTE-----EEEEEEEEEEECGGGTTHHHHSCCCEEEECSSCCTTCSSCCCH
T ss_pred -----ccEEEEeCCcEEE-EEEEEEEEEEcCc-----ceEeeEEEEEeccccCccccccccccccccccccccCCCccce
Confidence 8999999999765 9999999999997 8899999887765442 2 5678999999986543
Q ss_pred ---hHHhhhhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 232 ---LISQMKTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 232 ---l~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
+..| +.+..++|++|+.+... |.|+||| +.++.++ +.|+|+.. ..+|.|.++ +.+++....
T Consensus 186 ~~~~~~~-~~~~~~~fs~~~~~~~~~~g~l~~Gg~d~~~~~g~-~~~~pv~~---~~~w~i~l~-~~~~~~~~~------ 253 (373)
T d1miqa_ 186 VVELKNQ-NKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGN-ITYEKLNH---DLYWQIDLD-VHFGKQTME------ 253 (373)
T ss_dssp HHHHHHT-TSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEE-EEEEEBSS---SSSSEEEEE-EEETTEEEE------
T ss_pred ehhhhhh-hccccceEEEEeccCCCCCceeeccCCCchhccce-eeEEeccc---cceEEEEEE-EEECcEecC------
Confidence 3334 56788999999988754 8999999 4556666 99999986 789999986 555665443
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC--C
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS--E 382 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~--~ 382 (427)
...++|||||+++++|++++++|++++......... .+.. |... ..+|+|+|+|+|++++|+|++|+.+.. +
T Consensus 254 -~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~-~~~~-~~~~---~~~P~itf~f~g~~~~l~p~~y~~~~~~~~ 327 (373)
T d1miqa_ 254 -KANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLP-FYVT-TCDN---KEMPTLEFKSANNTYTLEPEYYMNPILEVD 327 (373)
T ss_dssp -EEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSS-CEEE-ETTC---TTCCCEEEECSSCEEEECGGGSEEESSSSS
T ss_pred -CcceEeccCCceeccCHHHHHHHHHHhCCeeccCCC-eeEe-cccc---CCCceEEEEECCEEEEECHHHeeEEEEeCC
Confidence 567999999999999999999999999755432221 2333 4433 278999999999999999999998853 3
Q ss_pred CeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 383 DLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 383 ~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+..|+. |++.+ +.||||++|||++|+|||++++|||||++|
T Consensus 328 ~~~C~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~rIGfA~ak 372 (373)
T d1miqa_ 328 DTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 372 (373)
T ss_dssp CSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEEECCCCCCCEEEcHHhhCcEEEEEECCCCEEEEEEcC
Confidence 567876 88764 579999999999999999999999999986
|
| >d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Chymosin (synonym: renin) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-54 Score=414.46 Aligned_cols=303 Identities=20% Similarity=0.334 Sum_probs=246.2
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
++.++.+.+|+++|.||||||++.|++||||+++||+|..|....|....++.|||++|+|++...
T Consensus 8 ~l~n~~~~~Y~~~i~iGtP~Q~~~l~~DTGSs~~Wv~~~~C~~~~~~c~~~~~f~~~~SsT~~~~~-------------- 73 (335)
T d1smra_ 8 VLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENG-------------- 73 (335)
T ss_dssp EEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCGGGGGSCCBCGGGCTTCEEEE--------------
T ss_pred eecccCCCEEEEEEEECCCCeEEEEEEECCcccEEEEcCCCCCccccccCCCcCCCccCcccccCC--------------
Confidence 344567899999999999999999999999999999999998222222567999999999999976
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-CCCCceEeecCCCCCh---------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDAS--------- 231 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s--------- 231 (427)
+.|.+.|++|+.. |.+++|+|++++. ...++.+++.......+ ....+||+|||+....
T Consensus 74 -----~~~~~~Y~~gs~~-G~~~~D~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Gi~glg~~~~~~~~~~~~~~ 142 (335)
T d1smra_ 74 -----DDFTIHYGSGRVK-GFLSQDSVTVGGI-----TVTQTFGEVTQLPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFD 142 (335)
T ss_dssp -----EEEEEEETTEEEE-EEEEEEEEEETTE-----EEEEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHH
T ss_pred -----CcEEEEecCceEE-EEEEEEEEEeccc-----ccccEEEEEEecccccccccccccccccccccccccCCCchHH
Confidence 8999999999765 9999999999986 66655555544443334 5678999999986532
Q ss_pred -hHHhhhhhccCceEEEeecCCC---ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCC
Q 040562 232 -LISQMKTTIAGKFSYCLVQQSS---TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305 (427)
Q Consensus 232 -l~~ql~~i~~~~Fs~~l~~~~~---G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 305 (427)
+.+| +.+..+.|++||.+... |.|+||+ ..++.++ ++|+|+.. ..+|.|.+++|.+++..+.. ..
T Consensus 143 ~l~~~-~~i~~~~fs~~l~~~~~~~~g~l~~G~~d~~~~~~~-~~~~~~~~---~~~~~v~~~~i~~~~~~~~~----~~ 213 (335)
T d1smra_ 143 HILSQ-GVLKEKVFSVYYNRGPHLLGGEVVLGGSDPQHYQGD-FHYVSLSK---TDSWQITMKGVSVGSSTLLC----EE 213 (335)
T ss_dssp HHHHT-TCBSSSEEEEEECCSSSSCCEEEEESSCCGGGEEEE-EEEEECSB---TTTTEEEEEEEEETTSCCBC----TT
T ss_pred HHHHh-cCccccceeEEeccCCCccceeEeccccCcccccCc-eeeeeccc---ccceEEEEeEEEECCeeEec----cC
Confidence 4455 66788999999987633 9999999 5556665 99999976 67899999999999987765 34
Q ss_pred CCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEe--CCC
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNI--SED 383 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~--~~~ 383 (427)
...++|||||+++++|++++++|++++.+...... .+..+|+..+ .+|+|+|+|+|+++.|++++|+++. ..+
T Consensus 214 ~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~--~~~~~c~~~~---~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~ 288 (335)
T d1smra_ 214 GCEVVVDTGSSFISAPTSSLKLIMQALGAKEKRLH--EYVVSCSQVP---TLPDISFNLGGRAYTLSSTDYVLQYPNRRD 288 (335)
T ss_dssp CEEEEECTTBSSEEECHHHHHHHHHHHTCEEEETT--EEEEEGGGGG---GSCCEEEEETTEEEEECHHHHBTT----CC
T ss_pred CceEEEeCCCCcccCCHHHHHHHHHHhCCeeccCC--ceeecccccC---CCCccEEEECCeEEEEChHHeEEEeccCCC
Confidence 67899999999999999999999999865432221 3456687553 7899999999999999999998653 345
Q ss_pred eEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 384 LVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 384 ~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
..|++ |+..+ +.+|||++|||++|+|||++++|||||++|
T Consensus 289 ~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~ak 335 (335)
T d1smra_ 289 KLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALAR 335 (335)
T ss_dssp CEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEEEecCcCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEEcC
Confidence 68987 76532 569999999999999999999999999986
|
| >d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin(ogen) species: Atlantic cod (Gadus morhua) [TaxId: 8049]
Probab=100.00 E-value=6e-53 Score=403.46 Aligned_cols=297 Identities=25% Similarity=0.421 Sum_probs=247.6
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
..+.+..|.+|+++|.||||+|++.|++||||+++||+|.+|. .|..+.++.|||++|+|++...
T Consensus 4 ~~~~n~~d~~Y~~~i~iGtP~q~~~~~~DTGS~~~Wv~~~~C~--~~~~~~~~~f~p~~Sst~~~~~------------- 68 (324)
T d1am5a_ 4 EQMKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS--AQACSNHNKFKPRQSSTYVETG------------- 68 (324)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCC--SHHHHTSCCBCGGGCTTCEEEE-------------
T ss_pred eeeeccCCcEEEEEEEEcCCCeEEEEEEECCCcceEEecCCCC--ccccCCCCCCCcccCCceeECC-------------
Confidence 3455667899999999999999999999999999999999998 6665788999999999999987
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh-------
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------- 231 (427)
|.+.+.|++|+.. |.++.|++++++. ++.++.|+++....+.+ ....+|++|||++..+
T Consensus 69 ------~~~~~~y~~g~~~-G~~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Gi~gLg~~~~~~~~~~~~ 136 (324)
T d1am5a_ 69 ------KTVDLTYGTGGMR-GILGQDTVSVGGG-----SDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPV 136 (324)
T ss_dssp ------EEEEEECSSCEEE-EEEEEEEEESSSS-----CEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCH
T ss_pred ------cceEEEecCCceE-EEEEEeecccCcc-----cceeEEEEEeeeeccceeecccccccccccCcccccCCCCcH
Confidence 8999999999866 9999999999997 88899999999988754 5678999999986432
Q ss_pred ---hHHhhhhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 232 ---LISQMKTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 232 ---l~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
+.+| +.|.++.||+||.+... |.|+||| ..++.++ +.|+|+.. ..+|.|.++++.+++..+..
T Consensus 137 ~~~~~~~-~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~-~~~~p~~~---~~~~~v~~~~~~~~~~~~~~----- 206 (324)
T d1am5a_ 137 FDNMGSQ-SLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGS-IHWIPVTA---EKYWQVALDGITVNGQTAAC----- 206 (324)
T ss_dssp HHHHHHT-TCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSC-CEEEEEEE---ETTEEEEECEEEETTEECCC-----
T ss_pred HHHHHhc-cCcccceEEEEecCCCCCCceEEeeccccccccCc-eEEeeccc---cceEEEEEeeEEeCCccccc-----
Confidence 3334 66788999999987643 9999999 4455555 99999987 77899999999999987764
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCe
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDL 384 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~ 384 (427)
....++|||||++++||++++++|++++........ ....|... ..+|+|+|+|+|.++.|++++|+.... .
T Consensus 207 ~~~~~iiDsGts~~~lp~~~~~~l~~~i~~~~~~~~---~~~~~~~~---~~~P~i~f~f~g~~~~l~~~~y~~~~~--~ 278 (324)
T d1am5a_ 207 EGCQAIVDTGTSKIVAPVSALANIMKDIGASENQGE---MMGNCASV---QSLPDITFTINGVKQPLPPSAYIEGDQ--A 278 (324)
T ss_dssp CCEEEEECTTCSSEEECTTTHHHHHHHHTCEECCCC---EECCTTSS---SSSCCEEEEETTEEEEECHHHHEEESS--S
T ss_pred CCcceeeccCcccccCCHHHHHHHHHHhCCcccCCc---cccccccc---ccCCceEEEECCEEEEECHHHhEecCC--C
Confidence 377899999999999999999999999865432211 11112211 278999999999999999999987643 3
Q ss_pred EEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 385 VCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 385 ~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.|.. |+..+ +.+|||++|||++|++||++++||||||+
T Consensus 279 ~c~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~igfA~a 323 (324)
T d1am5a_ 279 FCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPA 323 (324)
T ss_dssp CEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEB
T ss_pred eEEEEEEecCcCCCCCCCEEECHHhhcCEEEEEECCCCEEEEEEc
Confidence 5765 76532 56899999999999999999999999997
|
| >d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Yeast (Candida albicans) [TaxId: 5476]
Probab=100.00 E-value=1.9e-52 Score=403.04 Aligned_cols=301 Identities=22% Similarity=0.358 Sum_probs=247.9
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCC-------CCCCCCCCCCCCCcceeecCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCY-------KQDNPLFDPQRSSTYKYLSCSSSQC 153 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~-------~~~~~~y~p~~Sst~~~~~c~~~~C 153 (427)
..++..++..|+++|.||||||++.|++||||+++||+|..|.+..|. ...+..|||++|+|++...
T Consensus 4 p~~l~~~~~~Y~~~i~iGtP~Q~~~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~~~~~~~y~~~~Sst~~~~~------ 77 (342)
T d1eaga_ 4 PVTLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLN------ 77 (342)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEE------
T ss_pred eeEecCCCcEEEEEEEECCCCeEEEEEEECCCcceEEeecCCCccccccccCccccccCCcCCCccCcceeECC------
Confidence 344566789999999999999999999999999999998755422222 1356789999999999987
Q ss_pred CCCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCC---
Q 040562 154 APPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDA--- 230 (427)
Q Consensus 154 ~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~--- 230 (427)
|.|++.|++|+.+.|.++.|+++|++. .++++.|+++.... ..+|++|||++..
T Consensus 78 -------------~~~~~~Y~~g~~~~G~~~~d~~~~~~~-----~~~~~~~~~~~~~~-----~~~g~~Glg~~~~~~~ 134 (342)
T d1eaga_ 78 -------------TPFKIGYGDGSSSQGTLYKDTVGFGGV-----SIKNQVLADVDSTS-----IDQGILGVGYKTNEAG 134 (342)
T ss_dssp -------------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEES-----SSSCEEECSCGGGCSS
T ss_pred -------------eeEEEEeCCCceEEEEEEeeEEEeceE-----eeeeeEEEeeceee-----cccccccccccccccC
Confidence 899999999998889999999999987 88999999998763 4579999997543
Q ss_pred --------hhHHhhhhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 231 --------SLISQMKTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 231 --------sl~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
++.+| +.+.+++|++|+.+... |.|+||| ..++.++ +.|+|+.. ..+|.|++++|+||++.+.
T Consensus 135 ~~~~~~~~~L~~q-~~i~~~~fs~~l~~~~~~~G~l~~Gg~d~~~~~g~-~~~~p~~~---~~~w~v~l~~i~vgg~~~~ 209 (342)
T d1eaga_ 135 GSYDNVPVTLKKQ-GVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGS-LIALPVTS---DRELRISLGSVEVSGKTIN 209 (342)
T ss_dssp CSCCCHHHHHHHT-TSSSSSEEEEECCCTTCSEEEEEETEEETTSEEEE-EEEEECCC---SSSCEEEEEEEEETTEEEE
T ss_pred CccCccceehhhc-CCccceEEEEEcCCCCCCCceEEEcccCchhccce-EEEEeccc---ccceEEEEeeEEECCEEec
Confidence 25666 66788999999987644 9999999 5566666 99999986 7789999999999999887
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc--CCCcceeccCCCCccCeEEEEEe-CcEEEecCCc
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE--GPYDLCYSISSRPRFPEVTIHFR-DADVKLSTSN 375 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~--~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~~~ 375 (427)
.. +..+||||||+++++|++++++|.+++.+........ .+..+|. ..|+|+|+|+ |.++.||+++
T Consensus 210 ~~-----~~~~iiDSGts~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~c~------~~p~i~f~f~~~~~~~i~~~~ 278 (342)
T d1eaga_ 210 TD-----NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCN------LSGDVVFNFSKNAKISVPASE 278 (342)
T ss_dssp EE-----EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTTSCEEEEEESC------CCSEEEEECSTTCEEEEEGGG
T ss_pred cc-----ccccccccCCccccCCHHHHHHHHHHhCccccccCCCCceeccccc------cCCCEEEEECCCEEEEEChHH
Confidence 64 5689999999999999999999999998766443322 2444565 6699999997 6999999999
Q ss_pred eEEEeCC-----CeEEEEEEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 376 VFMNISE-----DLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 376 y~~~~~~-----~~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
|+++... ...|.......+.+|||++|||++|+|||++++|||||+++.++
T Consensus 279 y~~~~~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~a~~~~ 334 (342)
T d1eaga_ 279 FAASLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNEISLAQVKYTS 334 (342)
T ss_dssp GEEEC---CCSCTTEEEECEEECTTCEECHHHHTTEEEEEETTTTEEEEEEECCCS
T ss_pred eEEEecCCCCceeeEEEEccCCCCCcEECHHhhCcEEEEEECCCCEEEEEECCCCC
Confidence 9987642 23577633334789999999999999999999999999987543
|
| >d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin species: Mucor pusillus [TaxId: 4840]
Probab=100.00 E-value=9.3e-52 Score=400.59 Aligned_cols=309 Identities=21% Similarity=0.354 Sum_probs=252.1
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP-PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.+.++.+.+|+++|+||||||++.|+|||||+++||+|..|. +..| +.++.|||++|+|++...
T Consensus 7 ~~~~~~~~~Y~~~i~iGtP~Q~~~~ivDTGSs~~wv~~~~C~~~~~c--~~~~~f~~~~SsT~~~~~------------- 71 (357)
T d1mppa_ 7 GLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGC--VGKRFFDPSSSSTFKETD------------- 71 (357)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTC--CSSCCBCGGGCTTCEEEE-------------
T ss_pred ceecCCCCEEEEEEEEcCCCeEEEEEEeCCCcceEEccCCCCCCccc--cCCCCCCCccCCccccCC-------------
Confidence 356788999999999999999999999999999999999997 2345 567899999999999987
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC------C-CCCCceEeecCCCCCh--
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK------F-NSKTDGIVGLGGGDAS-- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~------~-~~~~~GilGLg~~~~s-- 231 (427)
|.+.+.|++|+.. |.++.|++.+++. .++++.|+++...... . ....+|++|||+...+
T Consensus 72 ------~~~~~~y~~g~~~-G~~~~d~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~ 139 (357)
T d1mppa_ 72 ------YNLNITYGTGGAN-GIYFRDSITVGGA-----TVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAM 139 (357)
T ss_dssp ------EEEEEECSSCEEE-EEEEEEEEEETTE-----EEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHH
T ss_pred ------cceEEecCCCcEE-EEEEeeecccccc-----eECcEEEEEEEeecccceecccccccccccccccccCCcccc
Confidence 8999999999765 9999999999997 8999999999876541 1 3567899999986532
Q ss_pred --------------hHHhhhhhccCceEEEeecCCC-ceeeeCC--CCcccCCCeeeeccccCCC-CccEEEEeeEEEec
Q 040562 232 --------------LISQMKTTIAGKFSYCLVQQSS-TKINFGT--NGIVSGSGVVSTPLLAKNP-KTFYSLTLDAISVG 293 (427)
Q Consensus 232 --------------l~~ql~~i~~~~Fs~~l~~~~~-G~l~fGg--~~~~~g~~~~~~p~~~~~~-~~~w~v~l~~i~v~ 293 (427)
+.+| +.+..++||+||.+... |.|+||| ..++.++ +.|+|+..... ..+|.|.+++|+|+
T Consensus 140 ~~~~~~~~~~~~~~l~~~-~~i~~~~fs~~l~~~~~~G~l~~Gg~d~~~~~~~-~~~~pi~~~~~~~~~~~v~l~~i~v~ 217 (357)
T d1mppa_ 140 EAEYGDTYNTVHVNLYKQ-GLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGD-IQYTDVLKSRGGYFFWDAPVTGVKID 217 (357)
T ss_dssp HHHHSCCCCCHHHHHHHT-TSSSSSEEEEECCCSSSEEEEEESSCCGGGBSSC-CEEEECEEETTEEEEEEEEEEEEEET
T ss_pred ccccCCCCCCHHHHHHhc-cccccceEEEEeccCCCCceEECcccChhHcCCc-eeEEEeccCCCCceeEEEEEeeEEEC
Confidence 3344 56788999999987654 9999999 4456665 99999987533 35799999999999
Q ss_pred ceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeC-------
Q 040562 294 DQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRD------- 366 (427)
Q Consensus 294 ~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g------- 366 (427)
++..... .....++|||||++++||++++++|++++......... .+..+|.... ...|.++|.|.+
T Consensus 218 g~~~~~~---~~~~~~ilDSGts~~~lp~~~~~~i~~~~~~~~~~~~~-~~~~~C~~~~--~~~~~~~~~~~~~~~~~~~ 291 (357)
T d1mppa_ 218 GSDAVSF---DGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATESQQ-GYTVPCSKYQ--DSKTTFSLVLQKSGSSSDT 291 (357)
T ss_dssp TEEEEEE---EEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCEEETT-EEEEEHHHHT--TCCCEEEEEEECTTCSSCE
T ss_pred CeEeeec---CCCcceEeeccCccccCCHHHHHHHHHHhcCCccccCC-ceeccccccc--ccCceEEEEEecccccccc
Confidence 9876543 22567899999999999999999999998654433222 4556787653 256888888874
Q ss_pred cEEEecCCceEEEeCC-CeEEEE-EEeCC-CcceechhhhcceEEEEeCCCCEEEEeeCCCC
Q 040562 367 ADVKLSTSNVFMNISE-DLVCSV-FNARD-DIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425 (427)
Q Consensus 367 ~~~~l~~~~y~~~~~~-~~~C~~-i~~~~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~ 425 (427)
.++.||+++|+.+... +..|+. +++.+ +.+|||.+|||++|+|||++++||||||++-.
T Consensus 292 ~~~~~p~~~~~~~~~~~~~~c~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~~~ 353 (357)
T d1mppa_ 292 IDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASG 353 (357)
T ss_dssp EEEEEEGGGGEEECSSSSCEEEESEEEESSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTT
T ss_pred EEEEEchHHeEEEecCCCCEEEEEEcCCCCCCEEechHHhCCEEEEEECCCCEEEEEECCcC
Confidence 3789999999988654 467887 77654 78999999999999999999999999999743
|
| >d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Chymosin (synonym: renin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-52 Score=401.04 Aligned_cols=301 Identities=22% Similarity=0.342 Sum_probs=249.4
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCC--CCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCY--KQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~--~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
..+.++.|.+|+++|.||||||++.|+|||||+++||+|..|. .|. ...++.|||++|+|++..+
T Consensus 7 ~~l~n~~d~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~--~~~~~c~~~~~y~~~~Sst~~~~~----------- 73 (337)
T d1hrna_ 7 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCS--RLYTACVYHKLFDASDSSSYKHNG----------- 73 (337)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSC--TTSHHHHSSCCBCGGGCSSCEEEE-----------
T ss_pred eEeEEcCCcEEEEEEEEeCCCEEEEEEEECCCcceEEEcCCCC--CcccccccCCCCChhhCCceEECC-----------
Confidence 3455678999999999999999999999999999999999998 442 2457899999999999987
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-CCCCceEeecCCCCCh------
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s------ 231 (427)
|.+.+.|++|+.. |.++.|++.+++. .+.++.+++.......+ ....+||+|||++...
T Consensus 74 --------~~~~~~~~~g~~~-G~~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~GilGl~~~~~~~~~~~~ 139 (337)
T d1hrna_ 74 --------TELTLRYSTGTVS-GFLSQDIITVGGI-----TVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTP 139 (337)
T ss_dssp --------EEEEEEETTEEEE-EEEEEEEEEETTE-----EEEEEEEEEEECCHHHHTTCSSCEEEECSCGGGCGGGCCC
T ss_pred --------ccEEEEecCcEEE-EEEEEeeeeecCc-----eeeeEEEEEEeccccccccccccccccccccccccCCCCc
Confidence 8999999999765 9999999999987 78777777766554444 5678999999986432
Q ss_pred ----hHHhhhhhccCceEEEeecCCC------ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeee
Q 040562 232 ----LISQMKTTIAGKFSYCLVQQSS------TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGV 299 (427)
Q Consensus 232 ----l~~ql~~i~~~~Fs~~l~~~~~------G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~ 299 (427)
+..| +.+..+.|++||.+... |.|+||+ ..++.++ +.|+|+.. ..+|.|.++++.++++....
T Consensus 140 ~~~~l~~~-~~i~~~~f~~~l~~~~~~~~~~~g~l~~G~~d~~~~~~~-~~~~~~~~---~~~~~v~~~~~~~~~~~~~~ 214 (337)
T d1hrna_ 140 IFDNIISQ-GVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN-FHYINLIK---TGVWQIQMKGVSVGSSTLLC 214 (337)
T ss_dssp HHHHHHTT-TCBSSSEEEEEECCCCC---CCCEEEEETSCCGGGEEEE-EEEEEBSS---TTSCEEEECEEEETTEEEES
T ss_pred chhhHhhc-CCCccceeeEEeccccCCCcccCceEEccccChhhcCCc-eeeeeeec---cceeEEeecceecccccccc
Confidence 3444 56788999999987632 8999999 4555555 99999986 78999999999999987765
Q ss_pred eccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEE
Q 040562 300 ISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMN 379 (427)
Q Consensus 300 ~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~ 379 (427)
.....++|||||++++||++++++|++++....... .+..+|+..+ .+|+|+|+|+|++++|+|++|+++
T Consensus 215 ----~~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~---~~~~~c~~~~---~~P~l~f~f~g~~~~l~p~~yl~~ 284 (337)
T d1hrna_ 215 ----EDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLF---DYVVKCNEGP---TLPDISFHLGGKEYTLTSADYVFQ 284 (337)
T ss_dssp ----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSS---CEEEETTTGG---GCCCEEEEETTEEEEECHHHHBCC
T ss_pred ----ccCcceEEeCCCcceeccHHHHHHHHHHhCCccccc---ceeeeccccC---CCCceeEEECCEEEEEChHHeEEE
Confidence 346789999999999999999999999986543221 3556677543 689999999999999999999886
Q ss_pred eCC--CeEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 380 ISE--DLVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 380 ~~~--~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
..+ +..|++ |+..+ +.||||++|||++|+|||++++||||||+|
T Consensus 285 ~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~IGfA~ak 337 (337)
T d1hrna_ 285 ESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 337 (337)
T ss_dssp CCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ecCCCCCEEEEEEEcCCcCCCCCCCEEECHHhhCCEEEEEECCCCEEEEEEcC
Confidence 543 468986 76432 568999999999999999999999999986
|
| >d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Fungus (Aspergillus oryzae) [TaxId: 5062]
Probab=100.00 E-value=1.5e-51 Score=393.67 Aligned_cols=300 Identities=19% Similarity=0.310 Sum_probs=246.6
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
+......+|.+|+++|.||+ |++.|+|||||+++||+|+.|. .|....++.|++++| |+....
T Consensus 6 ~~~~~~~~d~~Y~~~i~iG~--q~~~l~~DTGSs~~Wv~~~~C~--~~~~~~~~~~~~~sS-t~~~~~------------ 68 (323)
T d1izea_ 6 VTTNPTSNDEEYITQVTVGD--DTLGLDFDTGSADLWVFSSQTP--SSERSGHDYYTPGSS-AQKIDG------------ 68 (323)
T ss_dssp EEEEECGGGCCEEEEEEETT--EEEEEEEETTCCCCEECBTTSC--HHHHTTSCCBCCCTT-CEEEEE------------
T ss_pred ccccccCCccEEEEEEEECC--eeEEEEEECCCcceEEEcCCCC--ChhhcCCCccCcccc-ccccCC------------
Confidence 34444556889999999995 8899999999999999999998 676678888988755 555544
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh------
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------ 231 (427)
|.|.++|++|+...|.++.|++++++. .++++.|+++......+ ....+||||||++..+
T Consensus 69 -------~~~~i~Y~~G~~~~G~~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~ 136 (323)
T d1izea_ 69 -------ATWSISYGDGSSASGDVYKDKVTVGGV-----SYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTP 136 (323)
T ss_dssp -------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSC
T ss_pred -------CEEEEEcCCcceeeeEEEeeeeeccCc-----cccceEEEEEEeccCccccccccccccccccccccccCccc
Confidence 899999999998889999999999997 89999999999876633 5678999999985433
Q ss_pred ---hHHhh-hhhccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCC
Q 040562 232 ---LISQM-KTTIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305 (427)
Q Consensus 232 ---l~~ql-~~i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 305 (427)
+..++ +.+..++|++++.+...|.|+||| +.++.++ +.|+|+... ..+|.|.+++++|+++....
T Consensus 137 ~~~~~~~~~~~~~~~~fs~~l~~~~~g~l~~Gg~d~~~~~g~-~~~~~~~~~--~~~~~v~~~~i~v~~~~~~~------ 207 (323)
T d1izea_ 137 QKTFFDNVKSSLSEPIFAVALKHNAPGVYDFGYTDSSKYTGS-ITYTDVDNS--QGFWGFTADGYSIGSDSSSD------ 207 (323)
T ss_dssp CCCHHHHHGGGSSSSEEEEECCTTSCEEEEESSCCTTSEEEE-EEEEECBCT--TSSCEEEESEEEETTEEECC------
T ss_pred chHHHHhhhhhcCcceEEEEccCCCCeeEEccccCcccccCc-ceeeeecCC--CceEEEEeceEEECCCcccc------
Confidence 33332 456789999999987669999999 5667776 999999753 67899999999999987654
Q ss_pred CCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeE
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLV 385 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~ 385 (427)
...++|||||+++++|+++++++++.+.+....... ....|... .++|+++|+|+|.++.||+++|++...++..
T Consensus 208 ~~~~ivDSGts~~~lp~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~p~i~f~f~g~~~~ip~~~~~~~~~~~~~ 282 (323)
T d1izea_ 208 SITGIADTGTTLLLLDDSIVDAYYEQVNGASYDSSQ--GGYVFPSS---ASLPDFSVTIGDYTATVPGEYISFADVGNGQ 282 (323)
T ss_dssp CEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTT--TEEEEETT---CCCCCEEEEETTEEEEECHHHHEEEECSTTE
T ss_pred CceEEeccCCccccCCHHHHHHHHHHcCCccccCCC--CcEEeecc---cCCceEEEEECCEEEEcChHHEEEEeCCCCE
Confidence 678999999999999999999999887654332222 12224322 3789999999999999999999988766678
Q ss_pred EEE-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 386 CSV-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 386 C~~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
|+. |.+.. +.+|||++|||++|+|||++++|||||++
T Consensus 283 C~~~i~~~~~~~~~iLG~~flr~~y~vfD~~~~~IGfA~~ 322 (323)
T d1izea_ 283 TFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQ 322 (323)
T ss_dssp EEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCCCCEEECHHHhCCEEEEEECCCCEEEEccC
Confidence 987 77653 67999999999999999999999999986
|
| >d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plasmepsin (a hemoglobin-degrading enzyme) species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]
Probab=100.00 E-value=6.3e-51 Score=389.89 Aligned_cols=301 Identities=19% Similarity=0.269 Sum_probs=248.3
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
...+.++.+.+|+++|.||||+|++.|++||||+++||+|..|. .|..+.++.|||++|+|++..+
T Consensus 5 ~~~l~~~~~~~Y~~~v~iGtP~q~~~~~~DTGS~~~Wv~~~~C~--~~~~~~~~~y~~~~SsT~~~~~------------ 70 (329)
T d2bjua1 5 NIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT--TAGCLTKHLYDSSKSRTYEKDG------------ 70 (329)
T ss_dssp EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--STTGGGSCCBCGGGCTTCEEEE------------
T ss_pred cEEeEEecCCEEEEEEEECCCCEEEEEEEECCCcceEEECCCCC--CccccCCCCCCcccCCCccCCC------------
Confidence 34567888999999999999999999999999999999999999 6665788999999999999987
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC---CCCCceEeecCCCCCh-----
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF---NSKTDGIVGLGGGDAS----- 231 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GilGLg~~~~s----- 231 (427)
|.+.+.|++|+.. |.++.|++.+++. .+.++.++++....... ....+|++||++....
T Consensus 71 -------~~~~~~Y~~g~~~-G~~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~ 137 (329)
T d2bjua1 71 -------TKVEMNYVSGTVS-GFFSKDLVTVGNL-----SLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVD 137 (329)
T ss_dssp -------EEEEEECSSSEEE-EEEEEEEEEETTE-----EEEEEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCC
T ss_pred -------ccEEEEcCCCcEE-EEEEEeeeeeeee-----eeccceEEEEEeeccCccccccccCccccccccccccCCcc
Confidence 8999999999865 9999999999997 88888888887765422 5678999999874322
Q ss_pred -----hHHhhhhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeecc
Q 040562 232 -----LISQMKTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISG 302 (427)
Q Consensus 232 -----l~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 302 (427)
+..| +.+.++.|++|+..... |.|+||| ..++.++ +.|+|+.. ..+|.|.++.+.++...-
T Consensus 138 ~~~~~~~~~-~~i~~~~fs~~l~~~~~~~g~l~~gg~d~~~~~g~-~~~~~~~~---~~~~~v~~~~~~~~~~~~----- 207 (329)
T d2bjua1 138 PIVVELKNQ-NKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGP-LTYEKLNH---DLYWQITLDAHVGNIMLE----- 207 (329)
T ss_dssp CHHHHHHHT-TSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEE-EEEEEEEE---ETTEEEEEEEEETTEEEE-----
T ss_pred ccchhhhhh-hccccceeeEEecCCcCCcceeeecCCCcccccCc-eEEEeeee---eeeEEEEEeeeEeeeEcc-----
Confidence 3344 66789999999988754 9999999 4455555 99999976 778999999887654321
Q ss_pred CCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC
Q 040562 303 SNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE 382 (427)
Q Consensus 303 ~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~ 382 (427)
...++|||||++++||++++++|++++.+....... .+.. |... ..+|.++|+|+|.+++|+|++|+.+..+
T Consensus 208 ---~~~~~iDSGt~~~~lp~~~~~~l~~~~~~~~~~~~~-~~~~-~~~~---~~~p~~~f~~~g~~~~i~p~~y~~~~~~ 279 (329)
T d2bjua1 208 ---KANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLP-FYVT-LCNN---SKLPTFEFTSENGKYTLEPEYYLQHIED 279 (329)
T ss_dssp ---EEEEEECTTCCSEEECHHHHHHHTTTSSCEECTTSS-CEEE-ETTC---TTCCCEEEECSSCEEEECHHHHEEECTT
T ss_pred ---CCcccccccccceeCCHHHHHHHHHHhCCeecCCCC-eeEe-eccc---CCCCceeEEeCCEEEEECHHHhEEEeec
Confidence 457999999999999999999999988655443222 3333 4322 2689999999999999999999988654
Q ss_pred --CeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCCCC
Q 040562 383 --DLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425 (427)
Q Consensus 383 --~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~ 425 (427)
...|+. |++.+ +.||||.+|||++|+|||++++||||||+|++
T Consensus 280 ~~~~~C~~~i~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iGfA~a~~n 328 (329)
T d2bjua1 280 VGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAKKN 328 (329)
T ss_dssp TSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEECSC
T ss_pred CCCCEEEEEEEECCCCCCCEEEchHhhCcEEEEEECCCCEEEEEEeccC
Confidence 356765 88654 67999999999999999999999999999875
|
| >d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: beta-secretase (memapsin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-50 Score=390.82 Aligned_cols=314 Identities=18% Similarity=0.316 Sum_probs=246.0
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
+..+....++.|+++|+||||||++.|+|||||+++||+|.+|. .| +..|+|++|+|++...
T Consensus 5 ~~~l~~~~~~~Y~~~i~IGtP~Q~~~li~DTGSs~lWv~~~~c~--~~----~~~f~~~~SsT~~~~~------------ 66 (387)
T d2qp8a1 5 VDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP--FL----HRYYQRQLSSTYRDLR------------ 66 (387)
T ss_dssp TTCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCT--TC----SCCCCGGGCTTCEEEE------------
T ss_pred hhcccCCCCCEEEEEEEECCCCEEEEEEEECCccceEEccCCCC--cC----CCccCcccCCCcEeCC------------
Confidence 34444556677999999999999999999999999999999886 55 4679999999999987
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeec-CCCC-CCCCceEeecCCCCCh------
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKN-GGKF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~-~~~~-~~~~~GilGLg~~~~s------ 231 (427)
+.+.+.|++|+.. |.+++|+|+|++... ...++.|+..... ...+ ....+||||||++..+
T Consensus 67 -------~~~~i~Y~~g~~~-G~~~~D~v~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~ 135 (387)
T d2qp8a1 67 -------KGVYVPYTQGKWE-GELGTDLVSIPHGPN---VTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSL 135 (387)
T ss_dssp -------EEEEEECSSCEEE-EEEEEEEEECTTSCS---CEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTS
T ss_pred -------CcEEEEeCCccEE-EEEEEEEEEEcCCCc---eeEeEEEEEEEecCCcccccccccccccccccccccCCCCC
Confidence 8999999999765 999999999986421 2223444444443 3333 5778999999986543
Q ss_pred --hHHhh--hhhccCceEEEeecCC------------CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEec
Q 040562 232 --LISQM--KTTIAGKFSYCLVQQS------------STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVG 293 (427)
Q Consensus 232 --l~~ql--~~i~~~~Fs~~l~~~~------------~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~ 293 (427)
+...+ ..+..+.||+|+.+.. .|+|+||| ++++.++ ++|+|+.. +.+|.+.+++|+++
T Consensus 136 ~~~~~~l~~~~~~~~~fs~~l~~~~~~~~~~~~~~~~~G~l~~Gg~d~~~~~g~-~~~~~~~~---~~~~~v~~~~i~v~ 211 (387)
T d2qp8a1 136 EPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS-LWYTPIRR---EWYYEVIIVRVEIN 211 (387)
T ss_dssp CCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEE-EEEEECCS---BTTBBCCEEEEEET
T ss_pred CchHHHHhhccCcceeEeEeeccccccccccccccCCCceeEecccccccccCc-eEeecccc---cceeEEEEEEEEEC
Confidence 11111 2235789999997642 18999999 5556666 99999876 67899999999999
Q ss_pred ceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeC
Q 040562 294 DQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRD 366 (427)
Q Consensus 294 ~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g 366 (427)
++.+...........++||||+++++||++++++|.+++.+........ ....+|+..... ..+|.++|.|.+
T Consensus 212 g~~~~~~~~~~~~~~aiiDSGts~i~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~fp~~~~~~~~ 291 (387)
T d2qp8a1 212 GQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMG 291 (387)
T ss_dssp TEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEEC
T ss_pred CEecccccccCCccceEEecCCCeEeCCHHHHHHHHHHhcccccccccCCccccceeeeeeecCCCccccccceEEEecc
Confidence 9998764433446789999999999999999999999998877644332 345679876432 358999999986
Q ss_pred ------cEEEecCCceEEEeCC----CeEEEEE-Ee-CCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 367 ------ADVKLSTSNVFMNISE----DLVCSVF-NA-RDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 367 ------~~~~l~~~~y~~~~~~----~~~C~~i-~~-~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
..+.|+|++|+.+..+ ...|+.+ .. .+..||||++|||++|+|||++++|||||+++|..
T Consensus 292 ~~~~~~~~~~i~p~~y~~~~~~~~~~~~~c~~~~~~~~~~~~ILG~~Flr~~y~vfD~~~~~IGfA~a~c~~ 363 (387)
T d2qp8a1 292 EVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 363 (387)
T ss_dssp SSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCC
T ss_pred ccccceEEEEECHHHheeeccccCCcCceEEEEEeCCCCCCEEEhHHhhCcEEEEEECCCCEEEEEECCcCC
Confidence 3699999999998753 3578873 33 23789999999999999999999999999999953
|
| >d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]
Probab=100.00 E-value=5.7e-51 Score=389.50 Aligned_cols=295 Identities=22% Similarity=0.369 Sum_probs=245.7
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
...+|.+|+++|+|||| +++|+|||||+++||+|..|. .|..+.++.|||++|+|++..
T Consensus 10 ~~~~d~~Y~~~i~vG~~--~~~v~~DTGSs~~Wv~~~~C~--~c~~~~~~~y~~s~Sst~~~~----------------- 68 (323)
T d1bxoa_ 10 PTANDEEYITPVTIGGT--TLNLNFDTGSADLWVFSTELP--ASQQSGHSVYNPSATGKELSG----------------- 68 (323)
T ss_dssp ECGGGSCEEEEEEETTE--EEEEEEETTCCCEEECBTTSC--HHHHTTSCCBCHHHHCEEEEE-----------------
T ss_pred cccCCcEEEEEEEECCc--cEEEEEECCCcceEEECCCCC--chhhcCCCCCCCcccccccCC-----------------
Confidence 33567899999999984 578999999999999999998 776678899999999998874
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh---------h
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS---------L 232 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s---------l 232 (427)
|.+.+.|++|+.+.|.++.|++.+++. .+.++.|++.......+ ....+||||||++..+ +
T Consensus 69 ---~~~~~~Y~~G~~~~G~~~~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~GilGlg~~~~s~~~~~~~~~~ 140 (323)
T d1bxoa_ 69 ---YTWSISYGDGSSASGNVFTDSVTVGGV-----TAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTF 140 (323)
T ss_dssp ---EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCH
T ss_pred ---CEEEEEeCCCCcEEEEEEEEeeeccCc-----ccccceeeeeeeeecccccccccccccccccCcccccCCCcCchH
Confidence 899999999998889999999999987 89999999998877643 5678999999986443 2
Q ss_pred HHhh-hhhccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcE
Q 040562 233 ISQM-KTTIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309 (427)
Q Consensus 233 ~~ql-~~i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 309 (427)
...+ ..+..+.|++++.....|.|+||| ..++.++ +.|+|+... ..+|.+.+++|+|+++... ...+
T Consensus 141 ~~~~~~~~~~~~fs~~~~~~~~g~l~~Gg~d~~~~~~~-~~~~~~~~~--~~~~~~~~~~i~v~~~~~~-------~~~a 210 (323)
T d1bxoa_ 141 FDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGS-LTYTGVDNS--QGFWSFNVDSYTAGSQSGD-------GFSG 210 (323)
T ss_dssp HHHHGGGBSSSEEEEECCSSSCEEEEESSCCGGGBSSC-CEEEECBCT--TSSCEEEEEEEEETTEEEE-------EEEE
T ss_pred HHHHhhhcccceeeeccccCCCceeeeeccccccccCc-eeeeeccCc--ccceeEeeeeEEECCEecC-------Ccce
Confidence 2221 335788999998877679999999 4556666 999999864 6689999999999987654 4579
Q ss_pred EEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC-CCeEEEE
Q 040562 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS-EDLVCSV 388 (427)
Q Consensus 310 iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~-~~~~C~~ 388 (427)
+|||||+++++|++++++|++++.+.........+..+|. ..+|+|+|+|+|.++.|++++|++... ++.+|++
T Consensus 211 iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~c~-----~~~p~itf~f~g~~~~i~~~~~~~~~~~~~~~C~~ 285 (323)
T d1bxoa_ 211 IADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCS-----TNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLG 285 (323)
T ss_dssp EECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEEECTT-----CCCCCEEEEETTEEEEECHHHHEEEECSSSSCEEE
T ss_pred EEecccccccCCHHHHHHHHHHhCCccccCCCCcEEEecc-----CCCCcEEEEECCEEEEEChHHeEEEEcCCCCEEEE
Confidence 9999999999999999999998876544333323455676 378999999999999999999987654 4668997
Q ss_pred -EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 389 -FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 389 -i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
|.+.+ +.+|||++|||++|+|||++++||||||+
T Consensus 286 ~i~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~ 322 (323)
T d1bxoa_ 286 GIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQ 322 (323)
T ss_dssp SEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred EEECCCCCCcEEECHHHhCCEEEEEECCCCEEeEEeC
Confidence 87764 56899999999999999999999999996
|
| >d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Acid protease species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]
Probab=100.00 E-value=1.2e-49 Score=383.05 Aligned_cols=293 Identities=21% Similarity=0.305 Sum_probs=234.7
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.+|+.....+|+++|.||||||++.|++||||+++||+|..|. . .|+|+....
T Consensus 4 ~~p~~~~~~~Y~~~i~iGtP~Q~~~~i~DTGSs~~wv~~~~c~--~------------~sst~~~~~------------- 56 (340)
T d1wkra_ 4 SVPATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSY--V------------KTSTSSATS------------- 56 (340)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEEEETTCCCCEECSSSCC--C------------CCTTCEEEE-------------
T ss_pred eEceecCCeEEEEEEEEcCCCeEEEEEEECCCcceEEcCCCCC--C------------CCCCcCCCC-------------
Confidence 4566777788999999999999999999999999999988775 2 255555544
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCCh---------
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDAS--------- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s--------- 231 (427)
+.+.+.|++|+.. |.+++|++++++. +++++.||++....+. ...+||+|||+....
T Consensus 57 ------~~~~i~Y~~gs~~-G~~~~D~~~~~~~-----~~~~~~fg~~~~~~~~--~~~~gi~g~g~~~~~~~~~~~~~~ 122 (340)
T d1wkra_ 57 ------DKVSVTYGSGSFS-GTEYTDTVTLGSL-----TIPKQSIGVASRDSGF--DGVDGILGVGPVDLTVGTLSPHTS 122 (340)
T ss_dssp ------EEEEEECSSCEEE-EEEEEEEEEETTE-----EEEEEEEEEEEEEESC--TTCSEEEECSCGGGGTTSEESCTT
T ss_pred ------CeEEEEeCCeEEE-EEEEEEEEeeCCe-----eeccEEEEEEEeccCc--ccccceecccccccccccccCccc
Confidence 7999999999876 9999999999987 8999999999887652 467899999975331
Q ss_pred ---------hHHhhhhhccCceEEEeecCCC-----ceeeeCC--CCcccCCCeeeeccccCCC-CccEEEEeeEEEecc
Q 040562 232 ---------LISQMKTTIAGKFSYCLVQQSS-----TKINFGT--NGIVSGSGVVSTPLLAKNP-KTFYSLTLDAISVGD 294 (427)
Q Consensus 232 ---------l~~ql~~i~~~~Fs~~l~~~~~-----G~l~fGg--~~~~~g~~~~~~p~~~~~~-~~~w~v~l~~i~v~~ 294 (427)
+.+| +.+.++.|++||.+... |.|+||| ..++.++ +.|+|+..... ..||.|.++.+.++.
T Consensus 123 ~~~~~~~~~l~~q-~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~~~~g~-i~~~pv~~~~~~~~y~~i~~~~~~~~~ 200 (340)
T d1wkra_ 123 TSIPTVTDNLFSQ-GTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGS-ITYTPITSTSPASAYWGINQSIRYGSS 200 (340)
T ss_dssp CCCCCHHHHHHHT-TSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSC-CEEEECCSSTTGGGSSEEEEEEEETTT
T ss_pred cCcCchhhhHHhh-hccchhheeeeecccCCCCCCCceEEccccChhhcccc-eEEEEeecCCCCcceeEEEEEEEECCc
Confidence 4455 66788999999987643 8999999 4556666 99999987644 568999998777777
Q ss_pred eEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCC
Q 040562 295 QRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTS 374 (427)
Q Consensus 295 ~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~ 374 (427)
..+.. +..+||||||++++||++++++|++++......... .+..+|.... .+|+|+|+|+|.+++|+++
T Consensus 201 ~~~~~------~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~-~~~~~c~~~~---~~P~i~f~f~g~~~~i~~~ 270 (340)
T d1wkra_ 201 TSILS------STAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTG-LLRLTTAQYA---NLQSLFFTIGGQTFELTAN 270 (340)
T ss_dssp EEEEE------EEEEEECTTBCSEEECHHHHHHHHHHHTCEECTTTS-SEEECHHHHH---TCCCEEEEETTEEEEECTG
T ss_pred eEecc------CcceEEecCCccEeccHHHHHHHHHHhCccccCCce-EEEEeccccC---CCCceEEEECCEEEEEChH
Confidence 66544 567999999999999999999999998754433222 4566787543 6899999999999999999
Q ss_pred ceEEEeCC---------CeEEEE-EEeCC----CcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 375 NVFMNISE---------DLVCSV-FNARD----DIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 375 ~y~~~~~~---------~~~C~~-i~~~~----~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+|+.+... ...|.. ..... ..||||.+|||++|++||++++|||||++++++
T Consensus 271 ~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~~~~ 336 (340)
T d1wkra_ 271 AQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFTT 336 (340)
T ss_dssp GGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTTT
T ss_pred HeEeeccCceeecCccceEEEEEecccCCCCCCCCEEechHHhCCEEEEEECCCCEEEEEECCCCC
Confidence 99876431 112222 22221 468999999999999999999999999999875
|
| >d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plant acid proteinase, phytepsin species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=2.7e-49 Score=379.37 Aligned_cols=305 Identities=24% Similarity=0.351 Sum_probs=252.9
Q ss_pred CcccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCC-CCCCCCCCCCCCcceeecCCCCCCCCC
Q 040562 78 KVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYK-QDNPLFDPQRSSTYKYLSCSSSQCAPP 156 (427)
Q Consensus 78 ~~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~-~~~~~y~p~~Sst~~~~~c~~~~C~~~ 156 (427)
+.+.++.++.+.+|+++|.||||||++.|++||||+++||+|++|. .|.. +.++.|||++|+|++...
T Consensus 4 ~~~~~l~~y~d~~Y~~~v~iGtP~q~~~l~~DTGS~~~Wv~~~~C~--~~~~~~~~~~y~p~~SsT~~~~~--------- 72 (337)
T d1qdma2 4 GDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCY--FSIACYLHSRYKAGASSTYKKNG--------- 72 (337)
T ss_dssp SCSGGGCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCC--SCGGGGGSCCBCGGGCTTCBCCC---------
T ss_pred CCeEeeeeecCCEEEEEEEEcCCCEEEEEEEECCCcceEEecCCCC--CCccccCCCCCCcccCCccccCC---------
Confidence 4556667778899999999999999999999999999999999998 4432 467899999999999875
Q ss_pred CCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh---
Q 040562 157 IKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS--- 231 (427)
Q Consensus 157 ~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s--- 231 (427)
|.+.+.|++|+.. |.++.|++++++. .+.++.|++........ ....+|++||+++...
T Consensus 73 ----------~~~~~~y~~gs~~-G~~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~ 136 (337)
T d1qdma2 73 ----------KPAAIQYGTGSIA-GYFSEDSVTVGDL-----VVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGK 136 (337)
T ss_dssp ----------CEEEEEETTEEEE-EEEEEEEEEETTE-----EEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGG
T ss_pred ----------ceEEEecCCceEE-EEEEeeeEEEEee-----ccccceeeeeccccceeecccccccccccccCccccCC
Confidence 8999999999765 9999999999987 88899999988876643 5678999999986543
Q ss_pred -------hHHhhhhhccCceEEEeecCCC----ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 232 -------LISQMKTTIAGKFSYCLVQQSS----TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 232 -------l~~ql~~i~~~~Fs~~l~~~~~----G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
+..| ..+..+.|++++..... |.|.||+ ..++.+. +.++|+.. ..+|.+.+.++.|++..+.
T Consensus 137 ~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~g~l~~g~~d~~~~~~~-~~~~~~~~---~~~~~~~~~~~~v~~~~~~ 211 (337)
T d1qdma2 137 AVPVWYKMIEQ-GLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGE-HTYVPVTQ---KGYWQFDMGDVLVGGKSTG 211 (337)
T ss_dssp CCCHHHHHTTT-TCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEE-EEEEEEEE---ETTEEEEECCEEETTEECS
T ss_pred Cccchhhhhhh-hccCCCeEEEEeecCCCcccCcceecCCcCccccccc-eeeeeecc---ccceeeccceEEECCeEee
Confidence 2223 44578899999987633 9999999 5566665 88899886 6789999999999988876
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEE
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFM 378 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~ 378 (427)
.. .....++|||||+++++|.+++++|++++.+...... .+...|.... .+|+|+|+|+|+++.|++++|++
T Consensus 212 ~~---~~~~~~iiDtgt~~~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~---~~p~itf~f~g~~~~l~~~~~~~ 283 (337)
T d1qdma2 212 FC---AGGCAAIADSGTSLLAGPTAIITEINEKIGAAGSPMG--ESAVDCGSLG---SMPDIEFTIGGKKFALKPEEYIL 283 (337)
T ss_dssp TT---TTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCCSSS--CCEECGGGGT---TCCCEEEEETTEEEEECHHHHEE
T ss_pred ec---CCCceEEeeccCcceecchHHHHHHHHHhccccccCC--cccccccccC---CCCceEEEECCEEEEEChHHeEE
Confidence 54 3467899999999999999999999999977644332 3444576543 67999999999999999999998
Q ss_pred EeCC--CeEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 379 NISE--DLVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 379 ~~~~--~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
...+ +..|++ |+..+ +.+|||++|||++|+|||++++||||||+
T Consensus 284 ~~~~~~~~~C~~~i~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~igfA~a 336 (337)
T d1qdma2 284 KVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKA 336 (337)
T ss_dssp ECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EeccCCCCEEEEEEEecCcCCCCCCcEEEhHHhhcCEEEEEECCCCEEEEEEC
Confidence 8654 467987 77542 56999999999999999999999999986
|
| >d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Chymosin (synonym: renin) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.1e-49 Score=375.47 Aligned_cols=298 Identities=21% Similarity=0.353 Sum_probs=245.5
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+.++.+.+|+++|.||||||++.|++||||+++||+|.+|. .|..+.++.|+|++|+|++..+
T Consensus 8 l~~~~d~~Y~~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~C~--~~~~~~~~~y~~~~Sst~~~~~--------------- 70 (323)
T d3cmsa_ 8 LTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK--SNACKNHQRFDPRKSSTFQNLG--------------- 70 (323)
T ss_dssp EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SHHHHTSCCBCGGGCTTCEEEE---------------
T ss_pred eEeccCCEEEEEEEECCCCEEEEEEEECCCCceEEecCCCC--CcccCCCCCCCccccCccccCC---------------
Confidence 34578899999999999999999999999999999999999 7766788999999999999987
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh------hHH
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------LIS 234 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------l~~ 234 (427)
|.+.+.|++|+.. |.++.|+++|++. .+..+.|++........ .....+++|+++...+ +..
T Consensus 71 ----~~~~~~y~~gs~~-G~~~~d~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 140 (323)
T d3cmsa_ 71 ----KPLSIHYGTGSMQ-GILGYDTVTVSNI-----VDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFD 140 (323)
T ss_dssp ----EEEEEEETTEEEE-EEEEEEEEEETTE-----EEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHH
T ss_pred ----CcEEEEcCCceEE-EEEEEEEEEEecc-----ccccceEEEEEeecccccccccccccccccccccccCCCcchhh
Confidence 8999999999876 9999999999987 77788888887777632 4556788888875332 222
Q ss_pred hh---hhhccCceEEEeecCCC-ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCc
Q 040562 235 QM---KTTIAGKFSYCLVQQSS-TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGD 308 (427)
Q Consensus 235 ql---~~i~~~~Fs~~l~~~~~-G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 308 (427)
++ +.+..+.||++|.+... |.+.+|+ ..++.++ +.|+|+.. ..+|.+.+.++.+++..... .....
T Consensus 141 ~l~~~~~i~~~~fs~~l~~~~~~~~~~~g~~d~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~ 212 (323)
T d3cmsa_ 141 NMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGS-LHWVPVTV---QQYWQFTVDSVTISGVVVAC----EGGCQ 212 (323)
T ss_dssp HHHHTTCSSSSEEEEECCTTSSCEEEEESCCCGGGEEEE-EEEEECSS---BTTBEEEEEEEEETTEEEES----TTCEE
T ss_pred hHhhcCCCcccceeEEeccCCCCCceeccccCcccccCc-eEEeeccc---cceeEEEEeeEeeCCeeeec----CCCee
Confidence 22 56789999999988755 8999999 3344444 89999886 77899999999999887766 44778
Q ss_pred EEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEE
Q 040562 309 IVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSV 388 (427)
Q Consensus 309 ~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~ 388 (427)
++|||||++++||++++++|++++.+...... .+...|... ..+|+|+|+|+|++++|++++|+.+. ++ .|.+
T Consensus 213 ~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~--~~~~~~~~~---~~~p~i~f~f~g~~~~l~~~~y~~~~-~~-~c~~ 285 (323)
T d3cmsa_ 213 AILDTGTSKLVGPSSDILNIQQAIGATQNQYG--EFDIDCDNL---SYMPTVVFEINGKMYPLTPSAYTSQD-QG-FCTS 285 (323)
T ss_dssp EEECTTCCSEEECHHHHHHHHHHHTCEEETTT--EEEECTTCT---TTSCCEEEEETTEEEEECHHHHEEEE-TT-EEEE
T ss_pred EEEecCcceEEecHHHHHHHHHHhCceeccCC--ceeEecccc---CCCCeEEEEECCEEEEECHHHeEEcC-CC-EEEE
Confidence 99999999999999999999999876543321 233334433 36899999999999999999998764 33 5654
Q ss_pred -EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 389 -FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 389 -i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
|++.+ +.+|||+.|||++|++||++++||||||+
T Consensus 286 ~i~~~~~~~~~iLG~~~l~~~yvvfD~~~~~igfa~a 322 (323)
T d3cmsa_ 286 GFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKA 322 (323)
T ss_dssp SEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCCCEEEcHHhhCcEEEEEECCCCEEEEEEe
Confidence 88765 57999999999999999999999999996
|
| >d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Xylanase inhibitor TAXI-I species: Wheat (Triticum aestivum) [TaxId: 4565]
Probab=100.00 E-value=1e-47 Score=375.26 Aligned_cols=324 Identities=19% Similarity=0.344 Sum_probs=244.2
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCCCCCCCCC
Q 040562 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIKDSCSAEG 165 (427)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~~~c~~~~ 165 (427)
....|+++|.|||| |+|||||+++||+|+.|. .|............|+++....|..+.|.. ... ..
T Consensus 12 ~~~~Y~~~i~iGtp-----liiDTGSs~~Wvpc~~c~--~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~-----~~ 79 (381)
T d1t6ex_ 12 ATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ--PPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHD-----KP 79 (381)
T ss_dssp TTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC--CCCCCBTTSHHHHHHHSSCCTTCCCCCC-----------CB
T ss_pred CCCeEEEEEEcCCc-----eEEECCCCceeeccCCCC--CCcccccCCchhhhccCcCCCCCCCccccCCCCC-----CC
Confidence 45679999999997 999999999999999988 663221112222456677777777776654 211 12
Q ss_pred CceeeeeeCCCCeEEEEEEEEEEEEcCCCCCc---eecCcEEEEeEeecCCCC-CCCCceEeecCCCCChhHHhhhh--h
Q 040562 166 NCRYSVSYGDDSFSNGDLATETVTVGSTSGQA---VALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDASLISQMKT--T 239 (427)
Q Consensus 166 ~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~---~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~sl~~ql~~--i 239 (427)
.+.|.+.|++|+.+.|.+++|+|++++..... ....++.+++.......+ ....+||+|||+...++.+|+.. +
T Consensus 80 ~~~~~~~Y~~Gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~s~~~ql~~~~~ 159 (381)
T d1t6ex_ 80 CTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQK 159 (381)
T ss_dssp CEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTTSHHHHHHHHHT
T ss_pred CceeEEEeCCCCEEEEEEEEEEEEecccccccceeeEEeeeeeeccccccccccccCcceeeecCCCCcchHHHHhhhcC
Confidence 27899999999887899999999999763221 011233444443333333 56789999999999999988754 3
Q ss_pred ccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEccCC
Q 040562 240 IAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGT 315 (427)
Q Consensus 240 ~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt 315 (427)
.+++|++|+.+... +.+.||+ ..++.|+ +.|+|++......+|.|.+++|.+++..+...........+++||||
T Consensus 160 ~~~~fsl~l~~~~~~~~~~~~g~~~~~~~~g~-~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~i~DTGt 238 (381)
T d1t6ex_ 160 VANRFLLCLPTGGPGVAIFGGGPVPWPQFTQS-MPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRL 238 (381)
T ss_dssp CCSEEEEECCSSSCEEEEESCCSCSCHHHHTT-CCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSC
T ss_pred cceEEEeecCCCcccceEeecccccccccCCc-eEEEeeeccCCCceeEEEEEEEeeCCeeeccCcccccCcceEEecCC
Confidence 67899999988766 5666666 4456666 99999998665678999999999999988765554556789999999
Q ss_pred ccccccHHHHHHHHHHHHhhhccCCCc-----------CCCcceeccCC------CCccCeEEEEEe-CcEEEecCCceE
Q 040562 316 TLTYLPPAYASKLLSVMSSMIAAQPVE-----------GPYDLCYSISS------RPRFPEVTIHFR-DADVKLSTSNVF 377 (427)
Q Consensus 316 ~~~~lp~~~~~~i~~~l~~~~~~~~~~-----------~~~~~C~~~~~------~~~~P~i~~~f~-g~~~~l~~~~y~ 377 (427)
++++||++++++|++++.+........ ..+..|++... ...+|.|+|+|. |.++.|++++|+
T Consensus 239 t~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~f~~~~~~~i~~~~y~ 318 (381)
T d1t6ex_ 239 PYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSM 318 (381)
T ss_dssp SSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHHHE
T ss_pred ceEECCHHHHHHHHHHHHHHhcccccccccccccccccCCcceeeccccccccccccccccEEEEEcCCcEEEEChhHeE
Confidence 999999999999999998876532211 23445765521 135899999995 699999999999
Q ss_pred EEeCCCeEEEEEEeCC---------CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 378 MNISEDLVCSVFNARD---------DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 378 ~~~~~~~~C~~i~~~~---------~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+...++..|++|.... ..||||+.|||++|+|||++++|||||+..
T Consensus 319 ~~~~~~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~ 373 (381)
T d1t6ex_ 319 VDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP 373 (381)
T ss_dssp EEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred EEeCCCcEEEEEEecccccCCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEECC
Confidence 9888888999865421 469999999999999999999999999874
|
| >d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Retroviral protease (retropepsin) domain: Human immunodeficiency virus type 1 protease species: Human immunodeficiency virus type 1 [TaxId: 11676]
Probab=83.97 E-value=0.51 Score=33.11 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=23.4
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 040562 92 LIRISIGTPPVEILAVADTGSDLIWTQC 119 (427)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~ 119 (427)
.+.|.|| .|...+++|||.+++-+..
T Consensus 10 ~vtvkIg--Gq~~eaLLDTGADdTVlee 35 (99)
T d2nmza1 10 LVTIKIG--GQLKEALLDTGADDTVIEE 35 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEES
T ss_pred eEEEEEC--CEEEEEeeccCCCceEEec
Confidence 5789999 7999999999999999954
|
| >d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Retroviral protease (retropepsin) domain: Feline immunodeficiency virus (FIV) protease species: Feline immunodeficiency virus [TaxId: 11673]
Probab=83.02 E-value=0.56 Score=34.38 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=24.2
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
=.+.+.|+ .|.+++++|||.+++-+...
T Consensus 11 P~v~v~I~--Gq~v~~LLDTGAD~TVi~~~ 38 (113)
T d4fiva_ 11 PEILIFVN--GYPIKFLLDTGADITILNRR 38 (113)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEEGG
T ss_pred CeEEEEEC--CEEEEEEEcCCCCcEEEecc
Confidence 36788998 79999999999999999654
|
| >d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Retroviral protease (retropepsin) domain: Human immunodeficiency virus type 2 (HIV-2) protease species: Human immunodeficiency virus type 2 [TaxId: 11709]
Probab=82.21 E-value=0.67 Score=32.47 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=23.2
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 040562 92 LIRISIGTPPVEILAVADTGSDLIWTQC 119 (427)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~ 119 (427)
.+.|.|| .|...+++|||.+++-+..
T Consensus 10 ~vtvkIg--Gq~~eaLLDTGADdTVle~ 35 (99)
T d3ecga1 10 VVTAYIE--GQPVEVLLDTGADDSIVAG 35 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred eEEEEEC--CEEeeeecccCCCceeeec
Confidence 5789999 8999999999999999943
|
| >d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Retroviral protease (retropepsin) domain: EIAV protease species: Equine infectious anemia virus [TaxId: 11665]
Probab=81.52 E-value=0.7 Score=33.34 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.4
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQC 119 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~ 119 (427)
=.+.+.|+ +|+++.++|||.+++-+..
T Consensus 9 P~~~i~I~--Gq~v~~LLDTGAD~TVI~~ 35 (104)
T d2fmba_ 9 PTTIVLIN--DTPLNVLLDTGADTSVLTT 35 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred eEEEEEEC--CEEEEEEEeCCCCeEEEcc
Confidence 35788898 8999999999999998854
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